Citrus Sinensis ID: 007533
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 599 | 2.2.26 [Sep-21-2011] | |||||||
| Q1RMS2 | 586 | CTP synthase 2 OS=Bos tau | yes | no | 0.921 | 0.941 | 0.585 | 0.0 | |
| Q54V77 | 569 | CTP synthase OS=Dictyoste | yes | no | 0.916 | 0.964 | 0.593 | 0.0 | |
| Q6GME1 | 578 | CTP synthase 2 OS=Xenopus | N/A | no | 0.918 | 0.951 | 0.583 | 0.0 | |
| Q6PEI7 | 591 | CTP synthase 1 OS=Danio r | yes | no | 0.923 | 0.935 | 0.579 | 0.0 | |
| Q7ZXP9 | 591 | CTP synthase 1-B OS=Xenop | N/A | no | 0.923 | 0.935 | 0.586 | 0.0 | |
| Q9NRF8 | 586 | CTP synthase 2 OS=Homo sa | yes | no | 0.919 | 0.940 | 0.582 | 0.0 | |
| Q5XHA8 | 591 | CTP synthase 1-A OS=Xenop | N/A | no | 0.923 | 0.935 | 0.589 | 0.0 | |
| P70698 | 591 | CTP synthase 1 OS=Mus mus | yes | no | 0.921 | 0.934 | 0.590 | 0.0 | |
| P17812 | 591 | CTP synthase 1 OS=Homo sa | no | no | 0.921 | 0.934 | 0.587 | 0.0 | |
| Q5F3Z1 | 586 | CTP synthase 2 OS=Gallus | no | no | 0.919 | 0.940 | 0.584 | 0.0 |
| >sp|Q1RMS2|PYRG2_BOVIN CTP synthase 2 OS=Bos taurus GN=CTPS2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/560 (58%), Positives = 421/560 (75%), Gaps = 8/560 (1%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASSIG +LK+CGLRVT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
L+DGGEVDLDLGNYERF+DI L +DNNITTGKIYQ VI+KER+GDYLGKTVQVVPHITD
Sbjct: 61 LNDGGEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
+Q+W+ AM+PVDG + +CVIELGGTIGDIE MPF+EA QF ++ NFC IHV
Sbjct: 121 VQEWVMNQAMVPVDGHKEEPQICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CRS+ ++ VK K+S FCHV +
Sbjct: 181 SLVPQPSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRKAHEAIFKVLNLQ-----GTTKEPLLKEWTSRAEICDGLHEP 295
+I ++DV + + +P+LL + + I K + G + LL +W + A+ + L +
Sbjct: 241 VICIHDVSSTYRVPVLLEE--QGIIKYFKERLDLPIGDSASSLLSKWRNMADRYERLQKT 298
Query: 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 355
IA+VGKYT L D Y S+ KAL H+++ + KL + +I + DLE TE E+P + AW
Sbjct: 299 CSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEQTTEVEDPVKFHEAW 358
Query: 356 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 415
+ L ADG+LVPGGFG RG GK+ A +AR +IP+LG+CLGMQ+AVIEFAR+ LNL+D
Sbjct: 359 QKLCKADGVLVPGGFGIRGTLGKLQAISWARSRKIPFLGVCLGMQLAVIEFARNCLNLKD 418
Query: 416 ANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERH 475
A+STEF+PN + P VI MPE + ++GGTMRLG RRT F+ ++ KLYG+ FI+ERH
Sbjct: 419 ADSTEFEPNARVPVVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERH 478
Query: 476 RHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535
RHRYEVNP +I++LE LSF G+D +RMEI+EL NHPYF+GVQFHPE+ SRP KPSP
Sbjct: 479 RHRYEVNPSLISQLEQKDLSFVGQDVDGERMEIIELANHPYFVGVQFHPEFSSRPMKPSP 538
Query: 536 LFLGLIAAACGQLDT-LIQG 554
+LGL+ AA G L+ L+QG
Sbjct: 539 PYLGLLLAATGNLNAYLLQG 558
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Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Constitutes the rate-limiting enzyme in the synthesis of cytosine nucleotides. Bos taurus (taxid: 9913) EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 2 |
| >sp|Q54V77|PYRG_DICDI CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1 | Back alignment and function description |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/571 (59%), Positives = 421/571 (73%), Gaps = 22/571 (3%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY++VTGGV+SG+GKG+ ASS ++LK+ GLRVT IKIDPYLN DAGTMSPFEHGEVFV
Sbjct: 1 MKYIVVTGGVLSGIGKGIIASSTAMILKSMGLRVTSIKIDPYLNIDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+D+ L +DNNITTGKIY VI+KERKG YLGKTVQVVPHIT+E
Sbjct: 61 LDDGGEVDLDLGNYERFLDVNLGKDNNITTGKIYNLVIEKERKGQYLGKTVQVVPHITEE 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERVA +PVDG +G DVCVIELGGT+GDIESMPF EAL QF +RVG NFCL+HV
Sbjct: 121 IQNWIERVAHLPVDGDKGTPDVCVIELGGTVGDIESMPFTEALRQFQFRVGVENFCLMHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL VVGEQKTKP+Q S+R LR GL+P+ CRST L + K K+S FCHV N
Sbjct: 181 SLVPVLGVVGEQKTKPSQQSIRELRSLGLSPDFCLCRSTQPLTEETKKKISLFCHVAPDN 240
Query: 241 IITLYDVPNIWHIPLLLRKAHEAIFKVLNLQGTTKEPLLK------------EWTSRAEI 288
+I ++DV NI+ +P+LL + + + LQ K L K W A+
Sbjct: 241 VIGVHDVSNIYRVPILLNQQNLPNLVLRRLQLNPKVDLSKTSPSESTPYWMASWKGLADR 300
Query: 289 CDGLH----EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 344
D + P+RIAMVGKYTGL+DAYLS++KAL HAS+ + +K+VIDW+ A +LE T+
Sbjct: 301 MDKITNESLNPIRIAMVGKYTGLTDAYLSVIKALDHASMAIERKMVIDWVEASNLE--TQ 358
Query: 345 KENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVI 404
+ YK +W++L+GA GILVPGGFG+RG++G IL A YAR P+LGICLG+Q+AVI
Sbjct: 359 NSSTAEYKKSWEMLRGAHGILVPGGFGDRGIEGMILTANYARTSGKPFLGICLGLQIAVI 418
Query: 405 EFARSVLNLRDANSTEFDPN-TKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAK 463
E+AR+V+ +ANS EF + + V+FMPE SKTHMGGTMRLGSR T F D K +K
Sbjct: 419 EYARNVMGWENANSEEFSASGSGKNVVVFMPEVSKTHMGGTMRLGSRDTIFTDVDNKISK 478
Query: 464 LYGNRTF---IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGV 520
LY ++ERHRHRYEVNP+++ + GL F GKD T RMEIVEL +H Y++
Sbjct: 479 LYNVDKVGQAVEERHRHRYEVNPEVVDEIHAKGLHFVGKDTTGVRMEIVELKDHDYYVAC 538
Query: 521 QFHPEYKSRPGKPSPLFLGLIAAACGQLDTL 551
QFHPE+KSRP +PSP F+GL+ A+ +L +
Sbjct: 539 QFHPEFKSRPQRPSPPFIGLLNASLERLKKM 569
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Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q6GME1|PYRG2_XENLA CTP synthase 2 OS=Xenopus laevis GN=ctps2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/559 (58%), Positives = 415/559 (74%), Gaps = 9/559 (1%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASSIG +LK+CGLRVT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGVGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
L+DGGEVDLDLGNYERF+DI L +DNNITTGKIYQ VI++ER+GDYLGKTVQVVPHITD
Sbjct: 61 LNDGGEVDLDLGNYERFLDINLYKDNNITTGKIYQQVINRERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ A +PVD + +CVIELGGTIGDIE MPFIEA QF ++ NFC IHV
Sbjct: 121 IQEWVLNQAKVPVDRDQKEPQICVIELGGTIGDIEGMPFIEAFRQFQFKAKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CRS ++ VK K+S FCHV +
Sbjct: 181 SLVPQPSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSAKPIEMAVKQKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRKAHEAIFKVLN------LQGTTKEPLLKEWTSRAEICDGLHE 294
+I ++DV + + +P+LL++ + I K ++ L K W A+ + L +
Sbjct: 241 VIFVHDVSSTYRVPILLQE--QGIIKYFKQRLSIPIEDQPSTQLFK-WKRMADRYERLLK 297
Query: 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAA 354
IA+VGKYT LSD Y S+ KAL H+++ + KL + +I + DLE + + ++P Y A
Sbjct: 298 TCSIALVGKYTKLSDCYTSVFKALEHSALAINHKLNLMYIDSADLEPSMKAQDPVKYHKA 357
Query: 355 WKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 414
W+ L A+GILVPGGFG RG +GKI A +ARE +IP+LGICLGMQ+AV+EFAR++L +
Sbjct: 358 WEELCKAEGILVPGGFGLRGTEGKIQAITWARERKIPFLGICLGMQLAVVEFARNILKMT 417
Query: 415 DANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDER 474
DANSTEFDPNTKNP VI MPE MGGTMRLGSR+T F+ + KLY N+ F++ER
Sbjct: 418 DANSTEFDPNTKNPAVIDMPEHHPGDMGGTMRLGSRKTVFKTSESVVKKLYDNQDFVEER 477
Query: 475 HRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534
HRHRYEVNP+++ + E GL F G+D QRMEI+EL HPYF+GVQFHPE+ SRP KPS
Sbjct: 478 HRHRYEVNPELVQQFEEKGLKFVGQDNEGQRMEIIELEGHPYFVGVQFHPEFCSRPMKPS 537
Query: 535 PLFLGLIAAACGQLDTLIQ 553
P +LG + AA G+L+T +Q
Sbjct: 538 PPYLGFMLAASGKLNTYVQ 556
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Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Constitutes the rate-limiting enzyme in the synthesis of cytosine nucleotides. Xenopus laevis (taxid: 8355) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q6PEI7|PYRG1_DANRE CTP synthase 1 OS=Danio rerio GN=ctps1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/556 (57%), Positives = 418/556 (75%), Gaps = 3/556 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTAIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQSVI+KER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQSVINKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A IPVD + VCVIELGGT+GDIESMPF+EA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQAKIPVDDDDVEPQVCVIELGGTVGDIESMPFVEAFRQFQFKVKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD++VK K+S FCHV +
Sbjct: 181 SLVPQPSATGEQKTKPTQNSVRELRGLGLSPDLIMCRCSTPLDNSVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRKAHEAIF--KVLNLQGTTK-EPLLKEWTSRAEICDGLHEPVR 297
+I ++DV +I+ +PLLL + + LNL + +L +W ++ D L E
Sbjct: 241 VICVHDVSSIYRVPLLLEDQGVVGYFCRRLNLPIENRPRKMLAKWKEMSDRSDRLLEQCS 300
Query: 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 357
IA+VGKYT SD+Y S++KAL H+++ + KL + ++ + DLE + +E P Y AW+
Sbjct: 301 IALVGKYTKFSDSYASVIKALEHSALAISHKLEVKYVDSADLEPSMLQEEPVKYHEAWQK 360
Query: 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 417
L +DGILVPGGFG RG +GKI A +AR+ + P+LG+CLGMQ+AV EFAR++L+ DAN
Sbjct: 361 LCSSDGILVPGGFGVRGTEGKIQAINWARKQKKPFLGVCLGMQLAVCEFARNMLDWTDAN 420
Query: 418 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477
STEFDP TK+P VI MPE + MGGTMRLG RRT F+ K KLYG+ +++ERHRH
Sbjct: 421 STEFDPETKHPVVIDMPEHNPGQMGGTMRLGKRRTIFKNKSSILRKLYGDVDYVEERHRH 480
Query: 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 537
R+EVNP++ E G F G+D +RME++E+ +HPYF+GVQ+HPE+ SRP KPSP +
Sbjct: 481 RFEVNPELKHHFEEKGFRFVGQDVEGERMEVIEMDDHPYFVGVQYHPEFTSRPIKPSPPY 540
Query: 538 LGLIAAACGQLDTLIQ 553
LGL+ AA G+L + +Q
Sbjct: 541 LGLLLAAAGRLQSYLQ 556
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Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Danio rerio (taxid: 7955) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q7ZXP9|PYG1B_XENLA CTP synthase 1-B OS=Xenopus laevis GN=ctps1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/556 (58%), Positives = 415/556 (74%), Gaps = 3/556 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKGV ASS+G +LK+ L VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGVIASSVGTILKSSNLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQSVI+KERKGDYLGKTVQVVPHIT+
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQSVINKERKGDYLGKTVQVVPHITEA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD +VCVIELGGT+GDIESMPF+EA QF ++ NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGIEPEVCVIELGGTVGDIESMPFVEAFRQFQFKARRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV Q
Sbjct: 181 SLVPQPSATGEQKTKPTQNSVRELRGLGLSPDLVVCRCSTPLDTSVKEKISMFCHVEPQQ 240
Query: 241 IITLYDVPNIWHIPLLLRKAH--EAIFKVLNLQ-GTTKEPLLKEWTSRAEICDGLHEPVR 297
+I ++DV +I+ +PLLL + + + L+L G LL +W A+ + L E
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFRQRLDLPIGRQPRRLLMKWKEMADRYERLLESCS 300
Query: 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 357
IA+VGKYT SD+Y S++KAL H+++ + +L I +I + DLE T +E P Y AW+
Sbjct: 301 IALVGKYTKFSDSYASVIKALEHSALAINHRLEIKYIDSADLEQETLQEEPVRYHEAWQK 360
Query: 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 417
L +DGILVPGGFG RG +GKI A +AR+ + P+LG+CLGMQ+AV+EFAR VL+ +DAN
Sbjct: 361 LCSSDGILVPGGFGVRGTEGKIQAIAWARKQKKPFLGVCLGMQLAVVEFARDVLDWKDAN 420
Query: 418 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477
STEF+P T +P VI MPE + MGGTMRLG RRT F ++ KLYG +++ERHRH
Sbjct: 421 STEFNPKTSHPVVIDMPEHNPGQMGGTMRLGKRRTIFHSQNSVMKKLYGGHEYVEERHRH 480
Query: 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 537
RYEVNP++ LE GL F G+D +RMEIVEL +HPYF+GVQ+HPE+ SRP KPSP +
Sbjct: 481 RYEVNPELRRELEARGLKFVGQDTEGERMEIVELEDHPYFVGVQYHPEFLSRPIKPSPPY 540
Query: 538 LGLIAAACGQLDTLIQ 553
GL+ A+ G+L I+
Sbjct: 541 FGLLLASVGRLSQYIE 556
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Xenopus laevis (taxid: 8355) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q9NRF8|PYRG2_HUMAN CTP synthase 2 OS=Homo sapiens GN=CTPS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/558 (58%), Positives = 416/558 (74%), Gaps = 7/558 (1%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASSIG +LK+CGLRVT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
L+DGGEVDLDLGNYERF+DI L +DNNITTGKIYQ VI+KER+GDYLGKTVQVVPHITD
Sbjct: 61 LNDGGEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
+Q+W+ A +PVDG + +CVIELGGTIGDIE MPF+EA QF ++ NFC IHV
Sbjct: 121 VQEWVMNQAKVPVDGNKEEPQICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP L+ GEQKTKPTQ+SVR LRG GL+P+++ CRS+ ++ VK K+S FCHV +
Sbjct: 181 SLVPQLSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRKAHEAIFKVLNLQ-----GTTKEPLLKEWTSRAEICDGLHEP 295
+I ++DV + + +P+LL + ++I K + G + LL +W + A+ + L +
Sbjct: 241 VICIHDVSSTYRVPVLLEE--QSIVKYFKERLHLPIGDSASNLLFKWRNMADRYERLQKI 298
Query: 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 355
IA+VGKYT L D Y S+ KAL H+++ + KL + +I + DLE TE E+P + AW
Sbjct: 299 CSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAW 358
Query: 356 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 415
+ L ADGILVPGGFG RG GK+ A +AR +IP+LG+CLGMQ+AVIEFAR+ LNL+D
Sbjct: 359 QKLCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVCLGMQLAVIEFARNCLNLKD 418
Query: 416 ANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERH 475
A+STEF PN P VI MPE + ++GGTMRLG RRT F+ ++ KLYG+ FI+ERH
Sbjct: 419 ADSTEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERH 478
Query: 476 RHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535
RHR+EVNP++I + E LSF G+D RMEI+EL NHPYF+GVQFHPE+ SRP KPSP
Sbjct: 479 RHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSP 538
Query: 536 LFLGLIAAACGQLDTLIQ 553
+LGL+ AA G L+ +Q
Sbjct: 539 PYLGLLLAATGNLNAYLQ 556
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Constitutes the rate-limiting enzyme in the synthesis of cytosine nucleotides. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q5XHA8|PYG1A_XENLA CTP synthase 1-A OS=Xenopus laevis GN=ctps1-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/556 (58%), Positives = 414/556 (74%), Gaps = 3/556 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKGV ASSIG +LK+ L VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGVIASSIGTILKSSNLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQSVI+KERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQSVINKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD +VCVIELGGT+GDIESMPF+EA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGIEPEVCVIELGGTVGDIESMPFVEAFRQFQFKVRRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV Q
Sbjct: 181 SLVPQPSATGEQKTKPTQNSVRELRGLGLSPDLVVCRCSTPLDTSVKEKISMFCHVEPQQ 240
Query: 241 IITLYDVPNIWHIPLLLRKAH--EAIFKVLNLQ-GTTKEPLLKEWTSRAEICDGLHEPVR 297
+I ++DV +I+ +PLLL + + + L+L G LL +W A+ + L E
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFRQRLDLPIGRQPRRLLMKWKEMADRYERLLESCS 300
Query: 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 357
IA+VGKYT SD+Y S++KAL H+++ + +L I +I + DLE T +E P Y AW+
Sbjct: 301 IALVGKYTKFSDSYASVIKALEHSALAINHRLEIKYIDSADLEQETLQEEPVRYHEAWQK 360
Query: 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 417
L ++GILVPGGFG RG +GKI A +AR+ + P+LG+CLGMQ+AV+EFAR VL DAN
Sbjct: 361 LCSSEGILVPGGFGVRGTEGKIQAIAWARKQKKPFLGVCLGMQLAVVEFARDVLGWTDAN 420
Query: 418 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477
STEF+P T +P VI MPE + MGGTMRLG RRT F ++ KLYG +++ERHRH
Sbjct: 421 STEFNPKTSHPVVIDMPEHNPGQMGGTMRLGKRRTIFHSQNSIMKKLYGGHEYVEERHRH 480
Query: 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 537
RYEVNP++ LE GL F G+D +RMEIVEL +HPYF+GVQ+HPE+ SRP KPSP +
Sbjct: 481 RYEVNPELRRELEVRGLKFVGQDTEGERMEIVELEDHPYFVGVQYHPEFLSRPIKPSPPY 540
Query: 538 LGLIAAACGQLDTLIQ 553
GL+ A+ G+L I+
Sbjct: 541 FGLLLASVGRLSQYIE 556
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Xenopus laevis (taxid: 8355) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|P70698|PYRG1_MOUSE CTP synthase 1 OS=Mus musculus GN=Ctps1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/557 (59%), Positives = 420/557 (75%), Gaps = 5/557 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKGV ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGVIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQ VI+KERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD VCVIELGGT+GDIESMPFIEA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV +
Sbjct: 181 SLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRKAH--EAIFKVLNL--QGTTKEPLLKEWTSRAEICDGLHEPV 296
+I ++DV +I+ +PLLL + + + L+L + +++ L+K W A+ D L E
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLPIERQSRKMLMK-WKEMADRYDRLLETC 299
Query: 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 356
IA+VGKYT SD+Y S++KAL H+++ + KL I +I + DLE +T +E P Y AW+
Sbjct: 300 SIALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSTDLEPSTLQEEPVRYHEAWQ 359
Query: 357 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 416
L A G+LVPGGFG RG +GKI A +AR+ + P+LG+CLGMQ+AV+EF+R+VL +DA
Sbjct: 360 KLCSAHGVLVPGGFGVRGTEGKIQAIAWARKQKKPFLGVCLGMQLAVVEFSRNVLGWQDA 419
Query: 417 NSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 476
NSTEFDP T +P VI MPE + MGGTMRLG RRT FQ K+ KLYG+ +++ERHR
Sbjct: 420 NSTEFDPKTSHPVVIDMPEHNPGQMGGTMRLGKRRTLFQTKNSVMRKLYGDTDYLEERHR 479
Query: 477 HRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 536
HR+EVNP + LE GL F G+D +RMEIVEL +HP+F+GVQ+HPE+ SRP KPSP
Sbjct: 480 HRFEVNPVLKKCLEEQGLKFVGQDVEGERMEIVELEDHPFFVGVQYHPEFLSRPIKPSPP 539
Query: 537 FLGLIAAACGQLDTLIQ 553
+ GL+ A+ G+L +Q
Sbjct: 540 YFGLLLASVGRLPHYLQ 556
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|P17812|PYRG1_HUMAN CTP synthase 1 OS=Homo sapiens GN=CTPS1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/557 (58%), Positives = 416/557 (74%), Gaps = 5/557 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQ VI+KERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD VCVIELGGT+GDIESMPFIEA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV +
Sbjct: 181 SLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRKAH--EAIFKVLNLQGTTKEP--LLKEWTSRAEICDGLHEPV 296
+I ++DV +I+ +PLLL + + + L+L ++P +L +W A+ D L E
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLP-IERQPRKMLMKWKEMADRYDRLLETC 299
Query: 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 356
IA+VGKYT SD+Y S++KAL H+++ + KL I +I + DLE T +E P Y AW+
Sbjct: 300 SIALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSADLEPITSQEEPVRYHEAWQ 359
Query: 357 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 416
L A G+LVPGGFG RG +GKI A +AR + P+LG+CLGMQ+AV+EF+R+VL +DA
Sbjct: 360 KLCSAHGVLVPGGFGVRGTEGKIQAIAWARNQKKPFLGVCLGMQLAVVEFSRNVLGWQDA 419
Query: 417 NSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 476
NSTEFDP T +P V+ MPE + MGGTMRLG RRT FQ K+ KLYG+ +++ERHR
Sbjct: 420 NSTEFDPTTSHPVVVDMPEHNPGQMGGTMRLGKRRTLFQTKNSVMRKLYGDADYLEERHR 479
Query: 477 HRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 536
HR+EVNP LE GL F G+D +RMEIVEL +HP+F+GVQ+HPE+ SRP KPSP
Sbjct: 480 HRFEVNPVWKKCLEEQGLKFVGQDVEGERMEIVELEDHPFFVGVQYHPEFLSRPIKPSPP 539
Query: 537 FLGLIAAACGQLDTLIQ 553
+ GL+ A+ G+L +Q
Sbjct: 540 YFGLLLASVGRLSHYLQ 556
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q5F3Z1|PYRG2_CHICK CTP synthase 2 OS=Gallus gallus GN=CTPS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/558 (58%), Positives = 408/558 (73%), Gaps = 7/558 (1%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASSIG +LK+CGLRVT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
L+DGGEVDLDLGNYERF+DI L +DNNITTGKIYQ VI+KER GDYLGKTVQVVPHITD
Sbjct: 61 LNDGGEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERHGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
+Q+W+ A +PVD +CVIELGGTIGDIE MPF+EA QF ++ NFC IHV
Sbjct: 121 VQEWVMNQAKVPVDDDRKEPQICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP N GEQKTKPTQ+SVR LRG GL+P+++ CRS ++ VK K+S FCHV +
Sbjct: 181 SLVPQPNATGEQKTKPTQNSVRALRGLGLSPDLIVCRSAKPIEMAVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRKAHEAIFKV----LNLQ-GTTKEPLLKEWTSRAEICDGLHEP 295
+I ++DV + + +P+LL + + I K LNL LL +W A+ + L +
Sbjct: 241 VIFIHDVSSTYRVPILLEE--QGIIKYFKQRLNLPIDDQPSDLLMKWKKMADRYERLLKV 298
Query: 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 355
IA+VGKYT LSD Y S+ KAL H+++ + KL + +I + +LE +TE EN Y AW
Sbjct: 299 CSIALVGKYTKLSDCYASVFKALEHSALAINHKLDLMYIDSTELERSTEVENSVKYHQAW 358
Query: 356 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 415
L ADGILVPGGFG RG +GK+ A +AR + P+LG+CLGMQ+AV+EFAR+ LN +D
Sbjct: 359 HKLCKADGILVPGGFGIRGTEGKLQAISWARTKKKPFLGVCLGMQLAVVEFARNCLNWKD 418
Query: 416 ANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERH 475
ANSTEFDP+TK+P VI MPE + MGGTMRLG RRT F+ ++ KLYG+ F++ERH
Sbjct: 419 ANSTEFDPDTKSPVVIDMPEHNPGDMGGTMRLGKRRTVFKTQNSILRKLYGDEMFVEERH 478
Query: 476 RHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535
RHRYEVNP++ E GL F G D RME++EL NHPYF+GVQFHPE+ SRP KPSP
Sbjct: 479 RHRYEVNPELTHCFEEKGLKFVGHDTEGNRMEMIELENHPYFVGVQFHPEFSSRPMKPSP 538
Query: 536 LFLGLIAAACGQLDTLIQ 553
+LGL+ AA G L+ +Q
Sbjct: 539 PYLGLLLAATGTLNAYLQ 556
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Constitutes the rate-limiting enzyme in the synthesis of cytosine nucleotides. Gallus gallus (taxid: 9031) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 599 | ||||||
| 356526673 | 603 | PREDICTED: CTP synthase-like [Glycine ma | 0.998 | 0.991 | 0.822 | 0.0 | |
| 224057884 | 605 | predicted protein [Populus trichocarpa] | 0.984 | 0.975 | 0.807 | 0.0 | |
| 357517335 | 608 | CTP synthase like protein [Medicago trun | 0.976 | 0.962 | 0.821 | 0.0 | |
| 225424956 | 605 | PREDICTED: CTP synthase 1 [Vitis vinifer | 1.0 | 0.990 | 0.819 | 0.0 | |
| 225462352 | 595 | PREDICTED: CTP synthase [Vitis vinifera] | 0.986 | 0.993 | 0.815 | 0.0 | |
| 224072427 | 595 | predicted protein [Populus trichocarpa] | 0.984 | 0.991 | 0.827 | 0.0 | |
| 297851536 | 600 | hypothetical protein ARALYDRAFT_473316 [ | 0.988 | 0.986 | 0.800 | 0.0 | |
| 449433445 | 602 | PREDICTED: CTP synthase-like [Cucumis sa | 0.998 | 0.993 | 0.795 | 0.0 | |
| 356559159 | 601 | PREDICTED: CTP synthase-like [Glycine ma | 0.998 | 0.995 | 0.81 | 0.0 | |
| 255546624 | 602 | ctp synthase, putative [Ricinus communis | 0.998 | 0.993 | 0.790 | 0.0 |
| >gi|356526673|ref|XP_003531941.1| PREDICTED: CTP synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/602 (82%), Positives = 540/602 (89%), Gaps = 4/602 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTAIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQDWIERVA IPVDGK P DVCVIELGGTIGDIESMPFI+ALGQFSYRVG GNFCL+HV
Sbjct: 121 IQDWIERVAHIPVDGKTSPADVCVIELGGTIGDIESMPFIQALGQFSYRVGAGNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTKPTQHSVR LRGQGLTP+ILACRST+ LD+N KGKLSQFC +P +N
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVRALRGQGLTPHILACRSTMVLDENAKGKLSQFCLIPAEN 240
Query: 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
I+TLYDVPNIWHIPLLLR KAHEA+FKVLNL G TKEP L+EWT RAE D LHEPVRI
Sbjct: 241 IVTLYDVPNIWHIPLLLRDQKAHEAMFKVLNLHGVTKEPNLEEWTCRAESSDLLHEPVRI 300
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
A+VGKYT LSD+YLS+LKALLHASVD +KKLV+DWIPA +LE AT KENPDA+KAAWKLL
Sbjct: 301 ALVGKYTCLSDSYLSVLKALLHASVDCQKKLVVDWIPASNLESATAKENPDAFKAAWKLL 360
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
KGADG+LVPGGFG+RGVQGKI+AAKYARE+RIP+LGICLGMQ+AVIEFARSVL ++DANS
Sbjct: 361 KGADGVLVPGGFGDRGVQGKIIAAKYARENRIPFLGICLGMQIAVIEFARSVLGVQDANS 420
Query: 419 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 478
TEF+P+TK+P +IFMPEGSKTHMGGTMRLGSRRTYFQ K+CKSAKLYG ++FIDERHRHR
Sbjct: 421 TEFEPHTKSPYIIFMPEGSKTHMGGTMRLGSRRTYFQTKECKSAKLYGCKSFIDERHRHR 480
Query: 479 YEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFL 538
YEVNPD++ARLENAGLSFTGKDET QRMEIVELPNHPYFIG QFHPE+KSRPGKPSPLFL
Sbjct: 481 YEVNPDLVARLENAGLSFTGKDETGQRMEIVELPNHPYFIGAQFHPEFKSRPGKPSPLFL 540
Query: 539 GLIAAACGQLDTLIQGSGSQGN-LSAKLGNGIAMEKVYQKGTTKPAKVLS-DGLYSYCNG 596
G I AACGQLD ++Q S N LS + N I+ K Y+ T S + +Y CNG
Sbjct: 541 GFIGAACGQLDAVLQRSSIVDNGLSKGVINDISAVKTYRTRTATRTTYRSAEYVYGSCNG 600
Query: 597 VQ 598
+
Sbjct: 601 LH 602
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224057884|ref|XP_002299372.1| predicted protein [Populus trichocarpa] gi|222846630|gb|EEE84177.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/612 (80%), Positives = 540/612 (88%), Gaps = 22/612 (3%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT IKIDPYLNTDAGTMSPFEHGEV+V
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVYV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQS----------VIDKERKGDYLGKT 110
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQ+ VIDKER+GDYLGKT
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQASGLNFMFLCAVIDKERRGDYLGKT 120
Query: 111 VQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRV 170
VQVVPHITD IQ+WIERVA+IPVDG+ GP DVCVIELGGTIGDIESMPF EALGQFSYRV
Sbjct: 121 VQVVPHITDAIQEWIERVALIPVDGQPGPADVCVIELGGTIGDIESMPFTEALGQFSYRV 180
Query: 171 GPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKL 230
G GNFCLIHVSLVPV++ VGEQKTKPTQHSVRGLR GLTPNILACRST AL++NVK KL
Sbjct: 181 GAGNFCLIHVSLVPVISAVGEQKTKPTQHSVRGLRSLGLTPNILACRSTSALEENVKQKL 240
Query: 231 SQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEI 288
SQFCHVP +NIITLYDVPNIWH+P LLR KAHE I LNL G KEP LKEWTSRAE
Sbjct: 241 SQFCHVPVKNIITLYDVPNIWHLPSLLRDQKAHEGILGALNLPGFVKEPNLKEWTSRAEF 300
Query: 289 CDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENP 348
CD L EPVRIA+VGKYTGLSD+YLS+LKALLHASV LRKKLV+DW+PA D+ED T +ENP
Sbjct: 301 CDMLLEPVRIAVVGKYTGLSDSYLSLLKALLHASVSLRKKLVVDWVPASDIEDETARENP 360
Query: 349 DAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR 408
DAYKAAWKLLKGADG+LVPGGFG+RGV+GKILAAKYARE+RIP+LGICLGMQ+AVIEFAR
Sbjct: 361 DAYKAAWKLLKGADGVLVPGGFGDRGVEGKILAAKYARENRIPFLGICLGMQIAVIEFAR 420
Query: 409 SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNR 468
S+L L DANSTEFDP+TK+PCV+FMPEGSKTH+GGTMRLGSRRTYFQ+ D KSAKLYGNR
Sbjct: 421 SILGLHDANSTEFDPDTKSPCVVFMPEGSKTHLGGTMRLGSRRTYFQVMDSKSAKLYGNR 480
Query: 469 TFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 528
F+DERHRHRYEVNPDM++ LE+AGLSFTGKDET QRMEIVELPNHPY+IG QFHPE+KS
Sbjct: 481 GFVDERHRHRYEVNPDMVSSLEDAGLSFTGKDETGQRMEIVELPNHPYYIGTQFHPEFKS 540
Query: 529 RPGKPSPLFLGLIAAACGQLDTLIQGSGSQGNLSAKLGNGIAME-KVYQKG-TTKPAKVL 586
RPGKPS LFLGLIAAACGQLD L+ + K NG+A + +YQ G TK AK+
Sbjct: 541 RPGKPSALFLGLIAAACGQLDPLLH--------THKFPNGMAKKISLYQNGNATKFAKIP 592
Query: 587 SDGLYSYCNGVQ 598
+DG+YS CNGV
Sbjct: 593 ADGIYSNCNGVH 604
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357517335|ref|XP_003628956.1| CTP synthase like protein [Medicago truncatula] gi|355522978|gb|AET03432.1| CTP synthase like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/594 (82%), Positives = 533/594 (89%), Gaps = 9/594 (1%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSP EHGEV+V
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTAIKIDPYLNTDAGTMSPIEHGEVYV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERFMD+KLTRDNNITTGKIYQSVIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFMDVKLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQDWIERVA IPVDGKEGP DVCVIELGGTIGDIESMPFI+ALG FSYRVG NFCL+HV
Sbjct: 121 IQDWIERVAHIPVDGKEGPADVCVIELGGTIGDIESMPFIQALGHFSYRVGANNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTKPTQHSVRGLR QGLTP ILACRST+ LD+N K KLSQFC +P +N
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVRGLRSQGLTPQILACRSTMVLDENAKAKLSQFCLLPGEN 240
Query: 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
IITLYDVPNIWHIPLLLR KAHEAIFKVLN++G T+EP L+EWT RAE CD LHEPVRI
Sbjct: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNIKGMTQEPNLEEWTCRAESCDLLHEPVRI 300
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
A+VGKYT LSD+YLS+ KAL+HASV +KKL +DWI A +LEDAT KENPDAYKAAWKLL
Sbjct: 301 ALVGKYTCLSDSYLSVTKALVHASVSCQKKLTVDWISATNLEDATAKENPDAYKAAWKLL 360
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
KGADG+LVPGGFG+RGVQGKI+AAKYARE+RIPYLGICLGMQ+AVIEFARSVL L+DANS
Sbjct: 361 KGADGVLVPGGFGDRGVQGKIIAAKYARENRIPYLGICLGMQIAVIEFARSVLGLKDANS 420
Query: 419 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 478
TEFDPNTK+PCVIFMPEGSKTHMGGTMRLGSRRTYFQ K+CKSAKLYG ++FIDERHRHR
Sbjct: 421 TEFDPNTKSPCVIFMPEGSKTHMGGTMRLGSRRTYFQTKECKSAKLYGCKSFIDERHRHR 480
Query: 479 YEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFL 538
YEVNPD++ LEN+GLSFTGKDET QRMEIVE+PNHPYFIGVQFHPE+KSRP +PSPLFL
Sbjct: 481 YEVNPDLVTSLENSGLSFTGKDETGQRMEIVEIPNHPYFIGVQFHPEFKSRPARPSPLFL 540
Query: 539 GLIAAACGQLDTLIQGSGSQGNLSAKLGNGIAMEKVYQKGT-TKPAKVLSDGLY 591
G IAAACG+LD ++Q S S +G+ I K YQ G+ TKP + +Y
Sbjct: 541 GFIAAACGKLDAVLQHS------SRGVGSDIRAVKTYQNGSATKPHAYWPEHVY 588
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424956|ref|XP_002264587.1| PREDICTED: CTP synthase 1 [Vitis vinifera] gi|297738179|emb|CBI27380.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/605 (81%), Positives = 536/605 (88%), Gaps = 6/605 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG++LKACGLRVT IKIDPYLNTDAGTMSPFEHGEV+V
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLILKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVYV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQSVIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ERVA IPVDG+EGP DVCVIELGGTIGDIESMPFIEALGQFSYRVG GNFCLIHV
Sbjct: 121 IQEWVERVAKIPVDGEEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGAGNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL+VVGEQKTKPTQHSVRGLRG GL PNILACRST ALD+NVK KLSQFCHV +N
Sbjct: 181 SLVPVLSVVGEQKTKPTQHSVRGLRGLGLAPNILACRSTTALDENVKAKLSQFCHVSAEN 240
Query: 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
IITLYDV NIWHIPLLLR KAHEAI KVLNL EP L+EWTSRAE+ D LHE VRI
Sbjct: 241 IITLYDVSNIWHIPLLLRDQKAHEAILKVLNLLSVAGEPCLEEWTSRAELYDMLHERVRI 300
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
AMVGKYTGLSD+YLS++KALLHASV KKL++DW+PACDLE T KENPD Y AAW LL
Sbjct: 301 AMVGKYTGLSDSYLSVIKALLHASVAQGKKLIVDWVPACDLEPETAKENPDVYNAAWNLL 360
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
K ADG+LVPGGFG+RGVQGKILA KYARE+RIP+LGICLGMQ+AVIEFARSVL L+DANS
Sbjct: 361 KAADGVLVPGGFGDRGVQGKILATKYARENRIPFLGICLGMQIAVIEFARSVLGLKDANS 420
Query: 419 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 478
TEFDPNTKNPCVIFMPEGS THMGGTMRLGSRRTYFQ+ DCKSAKLYGNR+FIDERHRHR
Sbjct: 421 TEFDPNTKNPCVIFMPEGSTTHMGGTMRLGSRRTYFQVMDCKSAKLYGNRSFIDERHRHR 480
Query: 479 YEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFL 538
YEVNP+M+ LEN+GLSFTGKD + QRMEIVELPNHPYF+GVQFHPE+KSRPGKPS LFL
Sbjct: 481 YEVNPNMVMHLENSGLSFTGKDASGQRMEIVELPNHPYFVGVQFHPEFKSRPGKPSALFL 540
Query: 539 GLIAAACGQLDTLIQG---SGSQGNLSAKLGNGIAMEKVYQKGT-TKPAKVLSDGLYSYC 594
GLIAAACGQLD++++ S G + NG M K YQ G+ TKPA D +Y C
Sbjct: 541 GLIAAACGQLDSVLKEDRFSQKIGTGKGGMSNGTKMVKTYQNGSPTKPANGSFDDVYRNC 600
Query: 595 NGVQV 599
NGVQV
Sbjct: 601 NGVQV 605
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462352|ref|XP_002265957.1| PREDICTED: CTP synthase [Vitis vinifera] gi|297736081|emb|CBI24119.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/601 (81%), Positives = 531/601 (88%), Gaps = 10/601 (1%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQSVIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERVA++PVDGKEGP DVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV
Sbjct: 121 IQEWIERVAIVPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTKPTQHSVRGLRG GLTPNILACRST ALD+NVK KLSQFCHVP +N
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGLGLTPNILACRSTKALDENVKAKLSQFCHVPAEN 240
Query: 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
IITLYDVPNIWHIPLLLR KAHEAI K LNL G +EP LKEWT R E+CD LH PVRI
Sbjct: 241 IITLYDVPNIWHIPLLLRDQKAHEAILKRLNLIGVAREPDLKEWTIRTEVCDTLHNPVRI 300
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
AMVGKYTGLSDAYLS+LKALLHASV +KL+++WI A DLED T KE PDA+KAAW LL
Sbjct: 301 AMVGKYTGLSDAYLSVLKALLHASVACHRKLIVEWIAADDLEDVTAKEAPDAHKAAWDLL 360
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
KGADGILVPGGFG+RGVQGKILAAKYARE +P+LGICLGMQ+AVIEFARSVL L+DANS
Sbjct: 361 KGADGILVPGGFGDRGVQGKILAAKYAREKDVPFLGICLGMQIAVIEFARSVLGLQDANS 420
Query: 419 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 478
TEFDP TKNPCVIFMPEGSKTHMGGTMRLGSRRTYF+ DCKSAKLYG +F+DERHRHR
Sbjct: 421 TEFDPKTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFEFADCKSAKLYGGVSFVDERHRHR 480
Query: 479 YEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFL 538
YEVNP+M ++LE+AGLSF GKDET RMEIVELP+HPYF+GVQFHPE+KSRPGKPS LFL
Sbjct: 481 YEVNPNMTSQLEDAGLSFVGKDETGHRMEIVELPDHPYFVGVQFHPEFKSRPGKPSALFL 540
Query: 539 GLIAAACGQLDTLIQGSGSQGNLSAKLGNGIAMEKVYQKG-TTKPAKVLSDGLYSYCNGV 597
GLIAAAC + +++ + NG +M K +Q G TK + L +G+YS NGV
Sbjct: 541 GLIAAACDHVSSVVPK-------KIVMSNGQSMIKGHQNGNATKLSNGLVNGVYSNGNGV 593
Query: 598 Q 598
Sbjct: 594 H 594
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224072427|ref|XP_002303728.1| predicted protein [Populus trichocarpa] gi|222841160|gb|EEE78707.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/602 (82%), Positives = 546/602 (90%), Gaps = 12/602 (1%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYV+VTGGVVSGLGKGVTASSIGVLLKACG RVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVVVTGGVVSGLGKGVTASSIGVLLKACGFRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQ+VIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQAVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERVAMIPVDG+ GP DVCVIELGGTIGDIESMPF EALGQFSYRVG GNFCL+HV
Sbjct: 121 IQEWIERVAMIPVDGQPGPADVCVIELGGTIGDIESMPFTEALGQFSYRVGAGNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL+ VGEQKTKPTQHSVRGLR GLTPNILACRST+AL++NVK KLSQFCHVP +N
Sbjct: 181 SLVPVLSAVGEQKTKPTQHSVRGLRSLGLTPNILACRSTLALEENVKQKLSQFCHVPAEN 240
Query: 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
IITLYDVPNIWH+PLLLR KAHEAI VLNL G +EP +KEWTSRAE+CD L EPVRI
Sbjct: 241 IITLYDVPNIWHLPLLLRDQKAHEAILGVLNLLGIAREPNVKEWTSRAELCDMLLEPVRI 300
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
A+VGKYTGLSD+YLS+LKALLHASV LRKKLV+DWIPA DLED T KENPD YKAAWKLL
Sbjct: 301 AIVGKYTGLSDSYLSLLKALLHASVSLRKKLVVDWIPASDLEDETAKENPDVYKAAWKLL 360
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
KG+DG+LVPGGFG+RGV+GKILAAKYARE+RIP+LGICLGMQ+AVIEFARS+L L+DANS
Sbjct: 361 KGSDGVLVPGGFGDRGVEGKILAAKYARENRIPFLGICLGMQIAVIEFARSILGLQDANS 420
Query: 419 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 478
TEFDP+TK+PCVIFMPEGSKTH+GGTMRLGSRRTYFQ+ DCKSAKLYGNR FIDERHRHR
Sbjct: 421 TEFDPDTKDPCVIFMPEGSKTHLGGTMRLGSRRTYFQVMDCKSAKLYGNRGFIDERHRHR 480
Query: 479 YEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFL 538
YEVNPDM++RLE+AGLSFTGKDET QRMEIVELPNHPY+IG QFHPE+KSRPGKPS LFL
Sbjct: 481 YEVNPDMVSRLEDAGLSFTGKDETGQRMEIVELPNHPYYIGAQFHPEFKSRPGKPSALFL 540
Query: 539 GLIAAACGQLDTLIQGSGSQGNLSAKLGNGIAME-KVYQKG-TTKPAKVLSDGLYSYCNG 596
GLIAAAC QLD+L+ + K+ NG+A + + Q G TK AK+ +DG+YS CNG
Sbjct: 541 GLIAAACDQLDSLLH--------AHKIPNGMAKKISLCQNGNATKFAKIPTDGIYSNCNG 592
Query: 597 VQ 598
V
Sbjct: 593 VH 594
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297851536|ref|XP_002893649.1| hypothetical protein ARALYDRAFT_473316 [Arabidopsis lyrata subsp. lyrata] gi|297339491|gb|EFH69908.1| hypothetical protein ARALYDRAFT_473316 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/602 (80%), Positives = 534/602 (88%), Gaps = 10/602 (1%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQ VI KERKGDYLGKTVQVVPH+TD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQHVIAKERKGDYLGKTVQVVPHVTDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQDWIERVA+IPVDG+EGP DVCVIELGGTIGDIES PFIEALGQFSYRVGPGNFCL+HV
Sbjct: 121 IQDWIERVAVIPVDGEEGPADVCVIELGGTIGDIESAPFIEALGQFSYRVGPGNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTKPTQHSV+GLRG GLTP+ILACRST AL+DNVK KL+QFCHVP +
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVKGLRGLGLTPDILACRSTKALEDNVKEKLAQFCHVPLEY 240
Query: 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
I TLYDVPNIWHIPLLL+ KAH I KVLNL EP L EWTSRAE+CD LH PVRI
Sbjct: 241 IFTLYDVPNIWHIPLLLKDQKAHLVISKVLNLASILNEPSLGEWTSRAELCDNLHVPVRI 300
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
A+VGKYTGLSDAYLS+LKALLHASV RKKLV+DW+PACDLE TEKENPDAYKAAWKLL
Sbjct: 301 AVVGKYTGLSDAYLSVLKALLHASVACRKKLVVDWVPACDLEKETEKENPDAYKAAWKLL 360
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
KG DG+LVPGGFG+RGV+GKILAAKYARE++IP+LGICLGMQ+AVIEFARSVL L DANS
Sbjct: 361 KGVDGVLVPGGFGDRGVEGKILAAKYARENKIPFLGICLGMQIAVIEFARSVLCLHDANS 420
Query: 419 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 478
TEF P TK+PC+IFMPEGS+THMGGTMRLGSR+++F +KD KS+KLYGN++F+DERHRHR
Sbjct: 421 TEFKPETKHPCIIFMPEGSRTHMGGTMRLGSRKSFFNVKDSKSSKLYGNKSFVDERHRHR 480
Query: 479 YEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFL 538
YEVNPDM+ RLE AGLSF KDET +RMEI+ELPNHP+FIG QFHPE+KSRPGK SPLFL
Sbjct: 481 YEVNPDMVERLEKAGLSFAAKDETGKRMEIIELPNHPFFIGAQFHPEFKSRPGKASPLFL 540
Query: 539 GLIAAACGQLDTLIQGSGSQGNLSAKLGNGIAMEKVYQKGT-TKPAKVLSDGLYS--YCN 595
GLIAA+CG+LDT++ + + +L + NG + VY GT K + L+D Y+ YCN
Sbjct: 541 GLIAASCGELDTVLNPASAHQHL---ISNG--PKNVYVNGTPKKSSNGLADVRYNNGYCN 595
Query: 596 GV 597
G+
Sbjct: 596 GL 597
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433445|ref|XP_004134508.1| PREDICTED: CTP synthase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/601 (79%), Positives = 532/601 (88%), Gaps = 3/601 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLT DNNITTGKIYQSVIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTHDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIER A+IPVDGK+GP D+CVIELGGTIGDIESMPFIEALGQFSYRVG GNFCLIHV
Sbjct: 121 IQEWIERAALIPVDGKDGPADICVIELGGTIGDIESMPFIEALGQFSYRVGSGNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL VVGEQKTKPTQHSVRGLR GLTP++LACRST+ LD+NVK KLSQFCHVP +
Sbjct: 181 SLVPVLKVVGEQKTKPTQHSVRGLRSLGLTPHVLACRSTMVLDENVKRKLSQFCHVPVDS 240
Query: 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
IITLYDVPNIWHIPLLL+ KAHEAI KVLNL P L+EWT+RAE+CD LHEPVRI
Sbjct: 241 IITLYDVPNIWHIPLLLKDQKAHEAILKVLNLHSIAGGPALEEWTARAEMCDSLHEPVRI 300
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
AMVGKY GLSD+YLS+LKAL HAS+ KKL++DW+PA DLEDAT +ENP A+KAAWKLL
Sbjct: 301 AMVGKYMGLSDSYLSVLKALKHASLRCLKKLIVDWVPAGDLEDATAQENPAAHKAAWKLL 360
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
KGADGILVPGGFG+RGV+GKILA+KYARE+++P+LGICLGMQ+AVIEFARSVLNL+DANS
Sbjct: 361 KGADGILVPGGFGDRGVEGKILASKYARENKVPFLGICLGMQIAVIEFARSVLNLKDANS 420
Query: 419 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 478
TEFD +TKNPCVIFMPE SKTHMGGTMRLGSRRTYFQ+ DCKSAKLYGN+++IDERHRHR
Sbjct: 421 TEFDTSTKNPCVIFMPEVSKTHMGGTMRLGSRRTYFQVVDCKSAKLYGNKSYIDERHRHR 480
Query: 479 YEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFL 538
YEVNP M+++LENAGLSFTGKDET QRMEIVEL HPYFIGVQFHPE+KSRPGKPS LFL
Sbjct: 481 YEVNPHMVSQLENAGLSFTGKDETGQRMEIVELACHPYFIGVQFHPEFKSRPGKPSALFL 540
Query: 539 GLIAAACGQLDTLIQGSGSQGNLSAKLGNGIAMEKVYQKGTTK-PAKVLSDGLYSYCNGV 597
GLIAA+CGQLD++++ S S + ++ K+ + G K LS+ Y NG+
Sbjct: 541 GLIAASCGQLDSILKSSESWKKTAKNGSVEVSTMKLSRNGNMKMTVNGLSNDAYFNGNGL 600
Query: 598 Q 598
Sbjct: 601 H 601
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559159|ref|XP_003547868.1| PREDICTED: CTP synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/600 (81%), Positives = 535/600 (89%), Gaps = 2/600 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTAIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFIDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQDWIERVA IPVDG GP DVCV+ELGGTIGDIESMPFI+ALGQFSYRVG GNFCL+HV
Sbjct: 121 IQDWIERVAHIPVDGMIGPADVCVVELGGTIGDIESMPFIQALGQFSYRVGAGNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTK TQHSVR LRGQGLTP+ILACRST+ LD+N KGKLSQFC +P +N
Sbjct: 181 SLVPVLNVVGEQKTKATQHSVRALRGQGLTPHILACRSTMVLDENAKGKLSQFCLIPAEN 240
Query: 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
I+TLYDVPNIWHIPLLLR KAHEA+FKVLNL G KEP L+EWT RAE D L+EPVRI
Sbjct: 241 IVTLYDVPNIWHIPLLLRDQKAHEAMFKVLNLHGVAKEPNLEEWTCRAESSDLLYEPVRI 300
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
A+VGKYT LSD+YLSILKALLHASVD +KKLV+DWIPA +LE AT K N DAYKAAWKLL
Sbjct: 301 ALVGKYTCLSDSYLSILKALLHASVDCQKKLVVDWIPASNLETATAKGNHDAYKAAWKLL 360
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
KGADG+LVPGGFG+RGVQGKI+AAKYARE+RIP+LGICLGMQ+AVIEFARSVL ++DANS
Sbjct: 361 KGADGVLVPGGFGDRGVQGKIIAAKYARENRIPFLGICLGMQIAVIEFARSVLGVQDANS 420
Query: 419 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 478
TEF+P+TK+P +IFMPEGSKTHMGGTMRLGSRRTYFQ K+CKSAKLYG ++FIDERHRHR
Sbjct: 421 TEFEPHTKSPYIIFMPEGSKTHMGGTMRLGSRRTYFQTKECKSAKLYGCKSFIDERHRHR 480
Query: 479 YEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFL 538
YEVNPD++A LENAGLSFTGKDET QRMEI+ELPNHPYFIG QFHPE+KSRPGKPSPLFL
Sbjct: 481 YEVNPDLVACLENAGLSFTGKDETGQRMEILELPNHPYFIGAQFHPEFKSRPGKPSPLFL 540
Query: 539 GLIAAACGQLDTLIQGSGSQGNLSAKLGNGIAMEKVYQKGTTKPAKVLSDGLYSYCNGVQ 598
G I AACGQLD ++Q S N +K + ++ + TTK A ++ +Y CNG+
Sbjct: 541 GFIGAACGQLDAVLQRSSIVDNSLSKGVDISPVKTYRTRTTTKTAYRTAEYVYGSCNGLH 600
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546624|ref|XP_002514371.1| ctp synthase, putative [Ricinus communis] gi|223546468|gb|EEF47967.1| ctp synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/601 (79%), Positives = 531/601 (88%), Gaps = 3/601 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLT DNNITTGKIYQSVIDKER+GDYLGKTVQVVPHIT+
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTCDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITNA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERV+ +PVDGKEGP DVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV
Sbjct: 121 IQEWIERVSKVPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPV+NVVGEQKTKPTQHSVRGLRG GLTPNILACRS+ LD+NVK KLSQFCHVP +N
Sbjct: 181 SLVPVINVVGEQKTKPTQHSVRGLRGLGLTPNILACRSSKELDENVKLKLSQFCHVPAEN 240
Query: 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
I+TLYDVPNIWHIPLLLR KAHE+I KVLNL G + P L+EWT+R ++CD LH+PVRI
Sbjct: 241 IVTLYDVPNIWHIPLLLRDQKAHESILKVLNLLGFARAPDLQEWTARTKVCDMLHDPVRI 300
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
AMVGKYTGLSD+YLS+LKALLHASV +KL+++W+ A DLE+ T E PD Y AAW LL
Sbjct: 301 AMVGKYTGLSDSYLSVLKALLHASVACCRKLIVEWVAAGDLEEVTAIEAPDVYNAAWNLL 360
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
KGADG+LVPGGFG+RGVQGKILAAKYARE+++P+LGICLGMQ+AVIEFA+SVL L +ANS
Sbjct: 361 KGADGVLVPGGFGDRGVQGKILAAKYARENKVPFLGICLGMQIAVIEFAQSVLGLNNANS 420
Query: 419 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 478
TEFDP T NPCVIFMPEGSKTHMGGTMRLGSRRTYF++ DCKSAKLYGN +F+DERHRHR
Sbjct: 421 TEFDPETSNPCVIFMPEGSKTHMGGTMRLGSRRTYFKVPDCKSAKLYGNVSFVDERHRHR 480
Query: 479 YEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFL 538
YEVNPDMI++ E+AGLSF G+DET +RMEI+EL HPYF+GVQFHPE+KSRPGKPS +FL
Sbjct: 481 YEVNPDMISQFEDAGLSFVGRDETGRRMEIIELLGHPYFVGVQFHPEFKSRPGKPSAVFL 540
Query: 539 GLIAAACGQLDTLIQGSGSQGNLSAKLGNGIAMEKVYQKGT-TKPAKVLSDGLYSYCNGV 597
GLIAAACGQL+++++ G LS L NG + K YQ G K +G+YS NGV
Sbjct: 541 GLIAAACGQLESVLKSFGHASKLSNGLSNGKSTAKAYQNGNGVKSCNGSLNGVYSNGNGV 600
Query: 598 Q 598
Sbjct: 601 H 601
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A6LQF6 | PYRG_CLOB8 | 6, ., 3, ., 4, ., 2 | 0.4926 | 0.8764 | 0.9794 | yes | no |
| C5A7F1 | PYRG_THEGJ | 6, ., 3, ., 4, ., 2 | 0.5339 | 0.8714 | 0.9793 | yes | no |
| Q8TKW5 | PYRG_METAC | 6, ., 3, ., 4, ., 2 | 0.5264 | 0.8697 | 0.9756 | yes | no |
| Q2JUH1 | PYRG_SYNJA | 6, ., 3, ., 4, ., 2 | 0.4780 | 0.8731 | 0.9613 | yes | no |
| Q8DKT7 | PYRG_THEEB | 6, ., 3, ., 4, ., 2 | 0.5 | 0.8631 | 0.9521 | yes | no |
| Q6L1K7 | PYRG_PICTO | 6, ., 3, ., 4, ., 2 | 0.5155 | 0.8614 | 0.9662 | yes | no |
| A3DGR3 | PYRG_CLOTH | 6, ., 3, ., 4, ., 2 | 0.5045 | 0.8781 | 0.9704 | yes | no |
| A0B7H6 | PYRG_METTP | 6, ., 3, ., 4, ., 2 | 0.5098 | 0.8697 | 0.9542 | yes | no |
| A6UTE4 | PYRG_META3 | 6, ., 3, ., 4, ., 2 | 0.5135 | 0.8881 | 0.9815 | yes | no |
| Q7ZXP9 | PYG1B_XENLA | 6, ., 3, ., 4, ., 2 | 0.5863 | 0.9232 | 0.9357 | N/A | no |
| Q24MK9 | PYRG_DESHY | 6, ., 3, ., 4, ., 2 | 0.4808 | 0.8781 | 0.9887 | yes | no |
| P70698 | PYRG1_MOUSE | 6, ., 3, ., 4, ., 2 | 0.5906 | 0.9215 | 0.9340 | yes | no |
| A9N9V5 | PYRG_COXBR | 6, ., 3, ., 4, ., 2 | 0.4838 | 0.8647 | 0.9333 | yes | no |
| A6ZQ59 | URA8_YEAS7 | 6, ., 3, ., 4, ., 2 | 0.5459 | 0.9315 | 0.9653 | N/A | no |
| B6YTF0 | PYRG_THEON | 6, ., 3, ., 4, ., 2 | 0.5321 | 0.8714 | 0.9793 | yes | no |
| O59456 | PYRG_PYRHO | 6, ., 3, ., 4, ., 2 | 0.5229 | 0.8714 | 0.9720 | yes | no |
| Q6PEI7 | PYRG1_DANRE | 6, ., 3, ., 4, ., 2 | 0.5791 | 0.9232 | 0.9357 | yes | no |
| Q1RMS2 | PYRG2_BOVIN | 6, ., 3, ., 4, ., 2 | 0.5857 | 0.9215 | 0.9419 | yes | no |
| Q8R720 | PYRG_THETN | 6, ., 3, ., 4, ., 2 | 0.5137 | 0.8714 | 0.9720 | yes | no |
| Q5JGF1 | PYRG_PYRKO | 6, ., 3, ., 4, ., 2 | 0.5339 | 0.8714 | 0.9793 | yes | no |
| Q8Q0L8 | PYRG_METMA | 6, ., 3, ., 4, ., 2 | 0.5245 | 0.8697 | 0.9756 | yes | no |
| Q465Q4 | PYRG_METBF | 6, ., 3, ., 4, ., 2 | 0.5145 | 0.8714 | 0.9775 | yes | no |
| P28274 | URA7_YEAST | 6, ., 3, ., 4, ., 2 | 0.5616 | 0.9215 | 0.9533 | yes | no |
| Q7RZV2 | PYRG_NEUCR | 6, ., 3, ., 4, ., 2 | 0.5328 | 0.9015 | 0.9507 | N/A | no |
| Q12WH5 | PYRG_METBU | 6, ., 3, ., 4, ., 2 | 0.5201 | 0.8681 | 0.9737 | yes | no |
| Q2M197 | PYRG_DROPS | 6, ., 3, ., 4, ., 2 | 0.5422 | 0.9766 | 0.9083 | yes | no |
| Q5XHA8 | PYG1A_XENLA | 6, ., 3, ., 4, ., 2 | 0.5899 | 0.9232 | 0.9357 | N/A | no |
| Q9V1S2 | PYRG_PYRAB | 6, ., 3, ., 4, ., 2 | 0.5284 | 0.8714 | 0.9720 | yes | no |
| O74638 | PYRG_GIBZE | 6, ., 3, ., 4, ., 2 | 0.5206 | 0.9398 | 0.9706 | yes | no |
| B0CBC7 | PYRG_ACAM1 | 6, ., 3, ., 4, ., 2 | 0.4844 | 0.8731 | 0.9423 | yes | no |
| Q8TYT7 | PYRG_METKA | 6, ., 3, ., 4, ., 2 | 0.5145 | 0.8864 | 0.9925 | yes | no |
| B6J4W8 | PYRG_COXB1 | 6, ., 3, ., 4, ., 2 | 0.4856 | 0.8647 | 0.9333 | yes | no |
| Q6GME1 | PYRG2_XENLA | 6, ., 3, ., 4, ., 2 | 0.5831 | 0.9181 | 0.9515 | N/A | no |
| O42644 | PYRG_SCHPO | 6, ., 3, ., 4, ., 2 | 0.5669 | 0.9131 | 0.9116 | yes | no |
| Q6LYU4 | PYRG_METMP | 6, ., 3, ., 4, ., 2 | 0.5327 | 0.8747 | 0.9831 | yes | no |
| Q9NRF8 | PYRG2_HUMAN | 6, ., 3, ., 4, ., 2 | 0.5824 | 0.9198 | 0.9402 | yes | no |
| Q54V77 | PYRG_DICDI | 6, ., 3, ., 4, ., 2 | 0.5936 | 0.9165 | 0.9648 | yes | no |
| O29987 | PYRG_ARCFU | 6, ., 3, ., 4, ., 2 | 0.5082 | 0.8681 | 0.9774 | yes | no |
| A9KDH0 | PYRG_COXBN | 6, ., 3, ., 4, ., 2 | 0.4856 | 0.8647 | 0.9333 | yes | no |
| Q58574 | PYRG_METJA | 6, ., 3, ., 4, ., 2 | 0.5335 | 0.8848 | 0.9814 | yes | no |
| Q8TZY6 | PYRG_PYRFU | 6, ., 3, ., 4, ., 2 | 0.5283 | 0.8681 | 0.9683 | yes | no |
| Q9VUL1 | PYRG_DROME | 6, ., 3, ., 4, ., 2 | 0.5673 | 0.9215 | 0.8803 | yes | no |
| Q751L7 | PYRG_ASHGO | 6, ., 3, ., 4, ., 2 | 0.5549 | 0.9298 | 0.9670 | yes | no |
| Q6FUD0 | PYRG_CANGA | 6, ., 3, ., 4, ., 2 | 0.5616 | 0.9215 | 0.9550 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.4 | 0.963 |
| 3rd Layer | 6.3.5.2 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.3.4.2 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.I.8101.1 | CTP synthase (EC-6.3.4.2) (591 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00400106 | RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (149 aa) | • | • | 0.920 | ||||||
 | fgenesh4_pg.C_LG_XII000913 | hypothetical protein (152 aa) | • | • | 0.919 | ||||||
 | gw1.II.1445.1 | SubName- Full=Putative uncharacterized protein; (164 aa) | • | • | 0.917 | ||||||
 | gw1.I.7000.1 | hypothetical protein (1109 aa) | • | • | 0.910 | ||||||
 | eugene3.00060510 | hypothetical protein (1168 aa) | • | • | 0.907 | ||||||
 | estExt_Genewise1_v1.C_LG_XIII0788 | hypothetical protein (118 aa) | • | • | • | 0.907 | |||||
 | fgenesh4_pg.C_LG_XII000210 | hypothetical protein (112 aa) | • | • | 0.906 | ||||||
 | gw1.XV.93.1 | hypothetical protein (1112 aa) | • | • | • | 0.906 | |||||
 | eugene3.00012667 | hypothetical protein (390 aa) | • | • | 0.906 | ||||||
 | grail3.0008036902 | nucleoside-diphosphate kinase (EC-2.7.4.6) (237 aa) | • | • | 0.905 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 599 | |||
| PLN02327 | 557 | PLN02327, PLN02327, CTP synthase | 0.0 | |
| PRK05380 | 533 | PRK05380, pyrG, CTP synthetase; Validated | 0.0 | |
| COG0504 | 533 | COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [N | 0.0 | |
| TIGR00337 | 525 | TIGR00337, PyrG, CTP synthase | 0.0 | |
| pfam06418 | 276 | pfam06418, CTP_synth_N, CTP synthase N-terminus | 0.0 | |
| cd03113 | 255 | cd03113, CTGs, CTP synthetase (CTPs) is a two-doma | 1e-152 | |
| cd01746 | 235 | cd01746, GATase1_CTP_Synthase, Type 1 glutamine am | 1e-141 | |
| pfam00117 | 186 | pfam00117, GATase, Glutamine amidotransferase clas | 4e-46 | |
| PRK06186 | 229 | PRK06186, PRK06186, hypothetical protein; Validate | 5e-39 | |
| cd01653 | 115 | cd01653, GATase1, Type 1 glutamine amidotransferas | 6e-10 | |
| cd03128 | 92 | cd03128, GAT_1, Type 1 glutamine amidotransferase | 1e-08 | |
| PRK13181 | 199 | PRK13181, hisH, imidazole glycerol phosphate synth | 2e-04 | |
| COG0118 | 204 | COG0118, HisH, Glutamine amidotransferase [Amino a | 2e-04 | |
| PRK13146 | 209 | PRK13146, hisH, imidazole glycerol phosphate synth | 3e-04 | |
| cd01748 | 198 | cd01748, GATase1_IGP_Synthase, Type 1 glutamine am | 5e-04 | |
| PRK00758 | 184 | PRK00758, PRK00758, GMP synthase subunit A; Valida | 0.002 |
| >gnl|CDD|215186 PLN02327, PLN02327, CTP synthase | Back alignment and domain information |
|---|
Score = 1233 bits (3193), Expect = 0.0
Identities = 469/557 (84%), Positives = 508/557 (91%), Gaps = 2/557 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+D+ LTRDNNITTGKIYQSVI+KER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDVTLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERVA IPVDGKEGP DVCVIELGGT+GDIESMPFIEAL QFS+RVGPGNFCLIHV
Sbjct: 121 IQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQFSFRVGPGNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL VVGEQKTKPTQHSVRGLR GLTP+ILACRST L++NVK KLSQFCHVP +N
Sbjct: 181 SLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240
Query: 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
I+ L+DV NIWH+PLLLR KAHEAI KVLNL +EP L+EWT+RAE CD L EPVRI
Sbjct: 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRI 300
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
AMVGKYTGLSD+YLS+LKALLHASV +KLVIDW+ A DLED T KE PDAY AAWKLL
Sbjct: 301 AMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLL 360
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
KGADGILVPGGFG+RGV+GKILAAKYARE+++PYLGICLGMQ+AVIEFARSVL L+DANS
Sbjct: 361 KGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANS 420
Query: 419 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 478
TEFDP T NPCVIFMPEGSKTHMGGTMRLGSRRTYFQ DCKSAKLYGN +F+DERHRHR
Sbjct: 421 TEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHR 480
Query: 479 YEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFL 538
YEVNP+M+ RLE AGLSF GKDET +RMEIVELP+HP+F+GVQFHPE+KSRPGKPSPLFL
Sbjct: 481 YEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFL 540
Query: 539 GLIAAACGQLDTLIQGS 555
GLIAAA GQLD ++ S
Sbjct: 541 GLIAAASGQLDAVLNSS 557
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Length = 557 |
| >gnl|CDD|235437 PRK05380, pyrG, CTP synthetase; Validated | Back alignment and domain information |
|---|
Score = 869 bits (2248), Expect = 0.0
Identities = 297/550 (54%), Positives = 381/550 (69%), Gaps = 31/550 (5%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
KY+ VTGGVVS LGKG+TA+S+G LLKA GL+VT K+DPY+N D GTMSP++HGEVFV
Sbjct: 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFV 61
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
DDG E DLDLG+YERF+D LT+ NN+TTGKIY SVI+KER+GDYLGKTVQV+PHITDE
Sbjct: 62 TDDGAETDLDLGHYERFIDTNLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDE 121
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I++ I DV ++E+GGT+GDIES+PF+EA+ Q +G N IH+
Sbjct: 122 IKERILAAG--------TDADVVIVEIGGTVGDIESLPFLEAIRQLRLELGRENVLFIHL 173
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP + GE KTKPTQHSV+ LR G+ P+IL CRS L + K K++ FC+VPE+
Sbjct: 174 TLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233
Query: 241 IITLYDVPNIWHIPLLLRKA--HEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEP--- 295
+I+ DV +I+ +PLLL + + + + L L EP L EW E+ + L P
Sbjct: 234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGL--EAPEPDLSEWE---ELVERLKNPKGE 288
Query: 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 355
V IA+VGKY L DAY S+++AL HA + K+ I WI + DLE+ E
Sbjct: 289 VTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAE--------- 339
Query: 356 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 415
LLKG DGILVPGGFG RG++GKILA +YARE+ IP+LGICLGMQ+AVIEFAR+VL L D
Sbjct: 340 -LLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLGMQLAVIEFARNVLGLED 398
Query: 416 ANSTEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDER 474
ANSTEFDP+T +P + MPE + +GGTMRLG+ + +A++YG + I ER
Sbjct: 399 ANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLK-PGTLAAEIYG-KEEIYER 456
Query: 475 HRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534
HRHRYEVN +LE AGL F+G + +EIVELP+HP+F+GVQFHPE+KSRP +P
Sbjct: 457 HRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPH 516
Query: 535 PLFLGLIAAA 544
PLF G + AA
Sbjct: 517 PLFAGFVKAA 526
|
Length = 533 |
| >gnl|CDD|223578 COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 836 bits (2163), Expect = 0.0
Identities = 301/550 (54%), Positives = 377/550 (68%), Gaps = 24/550 (4%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
KY+ VTGGVVS LGKG+TA+S+G LLKA GL+VT K+DPYLN D GTMSP++HGEVFV
Sbjct: 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
DDG E DLDLG+YERF+D+ L++DNNITTGKIY VI+KER+GDYLGKTVQV+PHITDE
Sbjct: 61 TDDGAETDLDLGHYERFLDVNLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDE 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I+D I A + DV ++E+GGT+GDIES+PF+EA+ Q +G N IHV
Sbjct: 121 IKDRIREAA-------DSTADVVIVEIGGTVGDIESLPFLEAIRQLRLELGRENVLFIHV 173
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP + GE KTKPTQHSV+ LR G+ P+IL CRS L + + K++ FC+VPE+
Sbjct: 174 TLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEA 233
Query: 241 IITLYDVPNIWHIPLLLRKA--HEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
+I+ DV +I+ +PLLL K + I + LNL EP L EW + + V I
Sbjct: 234 VISAPDVESIYEVPLLLEKQGLDDYILERLNL--NAPEPDLSEWKDLVDKIKNPKKEVTI 291
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
A+VGKY L DAY S+++AL HA + L K+ I WI + DLE+ E L
Sbjct: 292 ALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAE----------LE 341
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
K DGILVPGGFG RGV+GKI A +YARE+ IP+LGICLGMQ+AVIEFAR+VL L ANS
Sbjct: 342 KLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANS 401
Query: 419 TEFDPNTKNPCVIFMPEGSK-THMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477
TEFDP+TK P V MPE +GGTMRLG+ + +AKLYG + I ERHRH
Sbjct: 402 TEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLK-PGTLAAKLYG-KDEIYERHRH 459
Query: 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 537
RYEVN D +LE AGL F+G +EIVELP+HP+F+ QFHPE+KSRP +P PLF
Sbjct: 460 RYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLF 519
Query: 538 LGLIAAACGQ 547
+G + AA
Sbjct: 520 VGFVKAALEY 529
|
Length = 533 |
| >gnl|CDD|232926 TIGR00337, PyrG, CTP synthase | Back alignment and domain information |
|---|
Score = 780 bits (2017), Expect = 0.0
Identities = 305/546 (55%), Positives = 378/546 (69%), Gaps = 24/546 (4%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+ VTGGVVS LGKG+TA+SIG LLKA GL+VT IKIDPY+N D GTMSP +HGEVFV
Sbjct: 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
DDG E DLDLG+YERF+D LTRDNNITTGKIY SVI+KERKGDYLGKTVQ++PHIT+E
Sbjct: 61 TDDGAETDLDLGHYERFLDTNLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNE 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I+D I+RVA K DV ++E+GGT+GDIES+PF+EA+ QF VG N IHV
Sbjct: 121 IKDRIKRVA------KISGPDVVIVEIGGTVGDIESLPFLEAIRQFRNEVGRENVAFIHV 174
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP + GEQKTKPTQHSV+ LR G+ P+I+ CRS+ LD + K K++ FC V E+
Sbjct: 175 TLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEA 234
Query: 241 IITLYDVPNIWHIPLLLRKA--HEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 298
+I +DV +I+ +PLLL K + + + LNL E L EW E V I
Sbjct: 235 VINAHDVSSIYEVPLLLLKQGLDDYLCRRLNL--NCDEADLSEWEELVEKFINPKHEVTI 292
Query: 299 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358
+VGKY L D+YLS+++AL HA L K+ I WI + DLE+ + L
Sbjct: 293 GIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGA-----------EFL 341
Query: 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418
KG DGILVPGGFG RGV+GKILA KYARE+ IP+LGICLGMQ+AVIEFAR+VL L+ ANS
Sbjct: 342 KGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANS 401
Query: 419 TEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477
TEFDP TK P V +PE + +GGTMRLG + + KLYG + ERHRH
Sbjct: 402 TEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILK-PGTLAFKLYGKEE-VYERHRH 459
Query: 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 537
RYEVN + +LEN GL +G + +EI+ELP+HP+F+ QFHPE+ SRP +P PLF
Sbjct: 460 RYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLF 519
Query: 538 LGLIAA 543
LG + A
Sbjct: 520 LGFVKA 525
|
CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7) [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 525 |
| >gnl|CDD|219017 pfam06418, CTP_synth_N, CTP synthase N-terminus | Back alignment and domain information |
|---|
Score = 518 bits (1338), Expect = 0.0
Identities = 171/284 (60%), Positives = 211/284 (74%), Gaps = 10/284 (3%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
KY+ VTGGVVS LGKG+TA+S+G LLK+ GL+VT KIDPYLN D GTMSP++HGEVFV
Sbjct: 1 TKYIFVTGGVVSSLGKGITAASLGRLLKSRGLKVTIQKIDPYLNVDPGTMSPYQHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
DDG E DLDLG+YERF+DI LT+DNNITTGKIY SVI+KER+GDYLGKTVQV+PHITDE
Sbjct: 61 TDDGAETDLDLGHYERFLDINLTKDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDE 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I++ I RVA P DV ++E+GGT+GDIES+PF+EA+ QF VG N IHV
Sbjct: 121 IKERIRRVAAKP------GPDVVIVEIGGTVGDIESLPFLEAIRQFRLEVGRENVLFIHV 174
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP L GE KTKPTQHSV+ LR G+ P+IL CRS LD+ K K++ FC+VP++
Sbjct: 175 TLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLDEETKEKIALFCNVPKEA 234
Query: 241 IITLYDVPNIWHIPLLLRK--AHEAIFKVLNLQGTTKEPLLKEW 282
+I+ DV +I+ +PLLL K E I + L L KEP L +W
Sbjct: 235 VISAPDVESIYEVPLLLEKQGLDELILEKLGL--DPKEPDLSKW 276
|
This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyzes the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position. Length = 276 |
| >gnl|CDD|239387 cd03113, CTGs, CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain | Back alignment and domain information |
|---|
Score = 437 bits (1126), Expect = e-152
Identities = 156/258 (60%), Positives = 196/258 (75%), Gaps = 6/258 (2%)
Query: 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVL 61
KY+ VTGGVVS LGKG+TA+S+G LLKA GL+VT K+DPYLN D GTMSP++HGEVFV
Sbjct: 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVT 60
Query: 62 DDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEI 121
DDG E DLDLG+YERF+D L+RDNNITTGKIY SVI+KER+GDYLGKTVQV+PHITDEI
Sbjct: 61 DDGAETDLDLGHYERFLDTNLSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEI 120
Query: 122 QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVS 181
++ I RVA ++ DV ++E+GGT+GDIES+PF+EA+ Q +G N IHV+
Sbjct: 121 KERIRRVA------EKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRENVLFIHVT 174
Query: 182 LVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241
LVP L GE KTKPTQHSV+ LR G+ P+IL CRS L ++ K++ FC VP + +
Sbjct: 175 LVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAV 234
Query: 242 ITLYDVPNIWHIPLLLRK 259
I+ DV NI+ +PLLL +
Sbjct: 235 ISAPDVDNIYEVPLLLEQ 252
|
The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain. Length = 255 |
| >gnl|CDD|153217 cd01746, GATase1_CTP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase | Back alignment and domain information |
|---|
Score = 409 bits (1054), Expect = e-141
Identities = 145/247 (58%), Positives = 174/247 (70%), Gaps = 13/247 (5%)
Query: 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 355
VRIA+VGKY L DAYLS+L+AL HA + L KL I WI + DLE+ A
Sbjct: 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEEN----------AE 50
Query: 356 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 415
+ LKGADGILVPGGFG RGV+GKILA KYARE+ IP+LGICLGMQ+AVIEFAR+VL L D
Sbjct: 51 EALKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPD 110
Query: 416 ANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDER 474
ANSTEFDP+T +P V MPE +GGTMRLG+ K A Y + ++ER
Sbjct: 111 ANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL--KPGTLAHKYYGKDEVEER 168
Query: 475 HRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534
HRHRYEVNP+ + LE AGL F+G D +EIVELP+HP+F+G QFHPE+KSRP KP
Sbjct: 169 HRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPH 228
Query: 535 PLFLGLI 541
PLF+G +
Sbjct: 229 PLFVGFV 235
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 235 |
| >gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 4e-46
Identities = 62/236 (26%), Positives = 80/236 (33%), Gaps = 54/236 (22%)
Query: 309 DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG 368
D S L A +L ++ + E + NPD GI++
Sbjct: 4 DNGDSFTYNLARALRELGVEVEVVPNDTPAEE--ILELNPD-------------GIIISP 48
Query: 369 GFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKN 427
G G+ G + G I A K RE++IP LGICLG Q+ + F V+
Sbjct: 49 GPGSPGALGGAIEAIKELRENKIPILGICLGHQLLALAFGGKVI---------------- 92
Query: 428 PCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIA 487
+ H G +G + YG R H Y V+PD
Sbjct: 93 ------KAKKEPHHGKNSPVGHDK----------GLFYGLPNVFIVRRYHSYAVDPDT-- 134
Query: 488 RLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543
GL T E M I N GVQFHPE PG P LF I
Sbjct: 135 --LPDGLEVTAASENGGIMAIRHKENP--IFGVQFHPESSLTPGGPELLFNFFIKL 186
|
Length = 186 |
| >gnl|CDD|180452 PRK06186, PRK06186, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 5e-39
Identities = 90/258 (34%), Positives = 124/258 (48%), Gaps = 34/258 (13%)
Query: 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAA 354
+RIA+VG Y A+ +I AL A+ L + +W+P ++ D +
Sbjct: 1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPED---------- 50
Query: 355 WKLLKGADGI-LVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 413
L G DGI VPG R G + A ++ARE+ IP+LG C G Q A++E+AR+VL
Sbjct: 51 ---LAGFDGIWCVPGS-PYRNDDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGW 106
Query: 414 RDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL--GSRRTYFQIKDCKSAKLYGNRTFI 471
DA E DP P VI S G +RL GS A+ YG I
Sbjct: 107 ADAAHAETDPEGDRP-VIAPLSCSLVEKTGDIRLRPGSL----------IARAYG-TLEI 154
Query: 472 DERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEI--VELPNHPYFIGVQFHPEYKSR 529
+E + RY VNP+ +A LE+ L TG DE ++ VELP HP+F+ F PE +
Sbjct: 155 EEGYHCRYGVNPEFVAALESGDLRVTGWDEDG---DVRAVELPGHPFFVATLFQPERAAL 211
Query: 530 PGKPSPLFLGLIAAACGQ 547
G+P PL + AA
Sbjct: 212 AGRPPPLVRAFLRAARAA 229
|
Length = 229 |
| >gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 6e-10
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 21/111 (18%)
Query: 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 357
+A++ S L AL A + +D + ++ +
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGAE------VDVVSPDGGPVESDVD----------- 43
Query: 358 LKGADGILVPGGFGNRGV----QGKILAAKYAREHRIPYLGICLGMQVAVI 404
L DG+++PGG G + + + A P LGICLG Q+ V+
Sbjct: 44 LDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLLVL 94
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115 |
| >gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-08
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 21/108 (19%)
Query: 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 357
+A++ S L AL A + +D + +
Sbjct: 1 VAVLLFGGSEELELASPLDALREAGAE------VDVVS-----------PDGGPVESDVD 43
Query: 358 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQV 401
L DG+++PGG G + + + A P LGICLG Q+
Sbjct: 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQL 91
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92 |
| >gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 46/203 (22%), Positives = 66/203 (32%), Gaps = 80/203 (39%)
Query: 356 KLLKGADGILVPG---------GFGNRGVQGKILAAKYAREH---RIPYLGICLGMQVAV 403
+ + GAD +++PG G+ + +EH + P LGICLGMQ+
Sbjct: 33 EEIAGADKVILPGVGAFGQAMRSLRESGLDEAL------KEHVEKKQPVLGICLGMQL-- 84
Query: 404 IEFARSV-------LNLRDANSTEFDPNT-KNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455
S L L + F K P MG +
Sbjct: 85 --LFESSEEGNVKGLGLIPGDVKRFRSEPLKVP-----------QMG----------WNS 121
Query: 456 IKDCKSAKLYGNRTFIDERHR----HRYEV---NPDMIARLENAGLSFT---GKDETSQR 505
+K K + L+ I+E H Y V +P+ + G+ F KD
Sbjct: 122 VKPLKESPLFKG---IEEGSYFYFVHSYYVPCEDPEDVLATTEYGVPFCSAVAKDN---- 174
Query: 506 MEIVELPNHPYFIGVQFHPEYKS 528
VQFHPE KS
Sbjct: 175 -----------IYAVQFHPE-KS 185
|
Length = 199 |
| >gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 51/195 (26%), Positives = 65/195 (33%), Gaps = 67/195 (34%)
Query: 358 LKGADGILVPG---------GFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR 408
+ AD +++PG RG+ I A K A E P+LGICLGMQ + F R
Sbjct: 37 ILKADKLILPGVGAFGAAMANLRERGL---IEAIKEAVESGKPFLGICLGMQ---LLFER 90
Query: 409 SV-------LNLRDANSTEFDPNT-KNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCK 460
S L L F K P HMG + F +
Sbjct: 91 SEEGGGVKGLGLIPGKVVRFPAEDLKVP-----------HMGW------NQVEFV----R 129
Query: 461 SAKLYGNRTFIDERHR----HRYEV---NPDMIARLENAGLSFTGKDETSQRMEIVELPN 513
L+ I + H Y V NP+ + + G F V N
Sbjct: 130 GHPLF---KGIPDGAYFYFVHSYYVPPGNPETVVATTDYGEPFPA---------AVAKDN 177
Query: 514 HPYFIGVQFHPEYKS 528
G QFHPE KS
Sbjct: 178 ---VFGTQFHPE-KS 188
|
Length = 204 |
| >gnl|CDD|237290 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 361 ADGILVPG---------GFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 410
AD +++PG G G+ ++ A A P+LGIC+GMQ + F R +
Sbjct: 42 ADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGR--PFLGICVGMQ---LLFERGL 95
|
Length = 209 |
| >gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 47/193 (24%), Positives = 67/193 (34%), Gaps = 58/193 (30%)
Query: 356 KLLKGADGILVPG-G-FG-------NRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406
+ + AD +++PG G FG RG+ + + P+LGICLGMQ + F
Sbjct: 32 EEILSADKLILPGVGAFGDAMANLRERGLIEAL--KEAIAS-GKPFLGICLGMQ---LLF 85
Query: 407 ARSV-------LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDC 459
S L L F + +P HMG + Q++
Sbjct: 86 ESSEEGGGTKGLGLIPGKVVRFPASEGLK----VP-----HMG----------WNQLEIT 126
Query: 460 KSAKLYGNRTFIDERHR----HRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHP 515
K + L+ I + H Y PD + G + VE N
Sbjct: 127 KESPLF---KGIPDGSYFYFVHSYYAPPD--DPDYILATTDYGGKFPA----AVEKDN-- 175
Query: 516 YFIGVQFHPEYKS 528
G QFHPE KS
Sbjct: 176 -IFGTQFHPE-KS 186
|
Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 198 |
| >gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Query: 356 KLLKGADGILVPGG-----FGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 410
++ DG+++ GG GN +Y +E +P LGICLG Q+ F V
Sbjct: 37 EIKAFEDGLILSGGPDIERAGN--------CPEYLKELDVPILGICLGHQLIAKAFGGEV 88
|
Length = 184 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| KOG2387 | 585 | consensus CTP synthase (UTP-ammonia lyase) [Nucleo | 100.0 | |
| COG0504 | 533 | PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide | 100.0 | |
| PLN02327 | 557 | CTP synthase | 100.0 | |
| PRK05380 | 533 | pyrG CTP synthetase; Validated | 100.0 | |
| TIGR00337 | 525 | PyrG CTP synthase. CTP synthase is involved in pyr | 100.0 | |
| PF06418 | 276 | CTP_synth_N: CTP synthase N-terminus; InterPro: IP | 100.0 | |
| cd03113 | 255 | CTGs CTP synthetase (CTPs) is a two-domain protein | 100.0 | |
| PRK06186 | 229 | hypothetical protein; Validated | 100.0 | |
| cd01746 | 235 | GATase1_CTP_Synthase Type 1 glutamine amidotransfe | 100.0 | |
| COG0505 | 368 | CarA Carbamoylphosphate synthase small subunit [Am | 100.0 | |
| PRK12564 | 360 | carbamoyl phosphate synthase small subunit; Review | 100.0 | |
| TIGR01368 | 358 | CPSaseIIsmall carbamoyl-phosphate synthase, small | 100.0 | |
| PRK12838 | 354 | carbamoyl phosphate synthase small subunit; Review | 100.0 | |
| CHL00197 | 382 | carA carbamoyl-phosphate synthase arginine-specifi | 99.98 | |
| PLN02771 | 415 | carbamoyl-phosphate synthase (glutamine-hydrolyzin | 99.97 | |
| PF00117 | 192 | GATase: Glutamine amidotransferase class-I; InterP | 99.94 | |
| COG0118 | 204 | HisH Glutamine amidotransferase [Amino acid transp | 99.94 | |
| cd01744 | 178 | GATase1_CPSase Small chain of the glutamine-depend | 99.93 | |
| COG2071 | 243 | Predicted glutamine amidotransferases [General fun | 99.93 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.92 | |
| PLN02335 | 222 | anthranilate synthase | 99.92 | |
| PRK08007 | 187 | para-aminobenzoate synthase component II; Provisio | 99.92 | |
| PRK11366 | 254 | puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; | 99.91 | |
| PRK06895 | 190 | putative anthranilate synthase component II; Provi | 99.91 | |
| COG0512 | 191 | PabA Anthranilate/para-aminobenzoate synthases com | 99.91 | |
| TIGR00888 | 188 | guaA_Nterm GMP synthase (glutamine-hydrolyzing), N | 99.91 | |
| PRK05670 | 189 | anthranilate synthase component II; Provisional | 99.91 | |
| CHL00101 | 190 | trpG anthranilate synthase component 2 | 99.91 | |
| TIGR00566 | 188 | trpG_papA glutamine amidotransferase of anthranila | 99.91 | |
| PRK07649 | 195 | para-aminobenzoate/anthranilate synthase glutamine | 99.9 | |
| cd01743 | 184 | GATase1_Anthranilate_Synthase Type 1 glutamine ami | 99.9 | |
| PRK06774 | 191 | para-aminobenzoate synthase component II; Provisio | 99.9 | |
| PRK07765 | 214 | para-aminobenzoate synthase component II; Provisio | 99.89 | |
| PRK00758 | 184 | GMP synthase subunit A; Validated | 99.89 | |
| cd01742 | 181 | GATase1_GMP_Synthase Type 1 glutamine amidotransfe | 99.89 | |
| PRK08857 | 193 | para-aminobenzoate synthase component II; Provisio | 99.88 | |
| PRK03619 | 219 | phosphoribosylformylglycinamidine synthase I; Prov | 99.87 | |
| TIGR01823 | 742 | PabB-fungal aminodeoxychorismate synthase, fungal | 99.87 | |
| PLN02347 | 536 | GMP synthetase | 99.87 | |
| PF07722 | 217 | Peptidase_C26: Peptidase C26; InterPro: IPR011697 | 99.87 | |
| PRK05637 | 208 | anthranilate synthase component II; Provisional | 99.86 | |
| PRK13170 | 196 | hisH imidazole glycerol phosphate synthase subunit | 99.86 | |
| TIGR01815 | 717 | TrpE-clade3 anthranilate synthase, alpha proteobac | 99.86 | |
| PRK13566 | 720 | anthranilate synthase; Provisional | 99.86 | |
| cd01745 | 189 | GATase1_2 Subgroup of proteins having the Type 1 g | 99.85 | |
| PRK13146 | 209 | hisH imidazole glycerol phosphate synthase subunit | 99.84 | |
| CHL00188 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.84 | |
| PRK00074 | 511 | guaA GMP synthase; Reviewed | 99.84 | |
| PRK14607 | 534 | bifunctional glutamine amidotransferase/anthranila | 99.83 | |
| PRK14004 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.82 | |
| PRK13141 | 205 | hisH imidazole glycerol phosphate synthase subunit | 99.82 | |
| PRK13142 | 192 | hisH imidazole glycerol phosphate synthase subunit | 99.81 | |
| PLN02889 | 918 | oxo-acid-lyase/anthranilate synthase | 99.8 | |
| PRK13143 | 200 | hisH imidazole glycerol phosphate synthase subunit | 99.8 | |
| PRK13152 | 201 | hisH imidazole glycerol phosphate synthase subunit | 99.8 | |
| PRK09522 | 531 | bifunctional glutamine amidotransferase/anthranila | 99.79 | |
| cd01747 | 273 | GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot | 99.79 | |
| PRK13181 | 199 | hisH imidazole glycerol phosphate synthase subunit | 99.79 | |
| cd01748 | 198 | GATase1_IGP_Synthase Type 1 glutamine amidotransfe | 99.79 | |
| PLN02832 | 248 | glutamine amidotransferase subunit of pyridoxal 5' | 99.78 | |
| cd01741 | 188 | GATase1_1 Subgroup of proteins having the Type 1 g | 99.77 | |
| PRK13527 | 200 | glutamine amidotransferase subunit PdxT; Provision | 99.77 | |
| COG0518 | 198 | GuaA GMP synthase - Glutamine amidotransferase dom | 99.76 | |
| PRK06490 | 239 | glutamine amidotransferase; Provisional | 99.76 | |
| PRK13525 | 189 | glutamine amidotransferase subunit PdxT; Provision | 99.76 | |
| PRK09065 | 237 | glutamine amidotransferase; Provisional | 99.75 | |
| PRK07053 | 234 | glutamine amidotransferase; Provisional | 99.75 | |
| PRK05665 | 240 | amidotransferase; Provisional | 99.75 | |
| TIGR01855 | 196 | IMP_synth_hisH imidazole glycerol phosphate syntha | 99.75 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 99.74 | |
| PRK07567 | 242 | glutamine amidotransferase; Provisional | 99.74 | |
| TIGR01737 | 227 | FGAM_synth_I phosphoribosylformylglycinamidine syn | 99.71 | |
| TIGR03800 | 184 | PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl | 99.7 | |
| KOG1224 | 767 | consensus Para-aminobenzoate (PABA) synthase ABZ1 | 99.7 | |
| KOG0026 | 223 | consensus Anthranilate synthase, beta chain [Amino | 99.67 | |
| PRK08250 | 235 | glutamine amidotransferase; Provisional | 99.66 | |
| cd01749 | 183 | GATase1_PB Glutamine Amidotransferase (GATase_I) i | 99.58 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 99.56 | |
| PRK13526 | 179 | glutamine amidotransferase subunit PdxT; Provision | 99.43 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 99.41 | |
| PRK01175 | 261 | phosphoribosylformylglycinamidine synthase I; Prov | 99.39 | |
| KOG1622 | 552 | consensus GMP synthase [Nucleotide transport and m | 99.36 | |
| PRK05368 | 302 | homoserine O-succinyltransferase; Provisional | 99.34 | |
| KOG3179 | 245 | consensus Predicted glutamine synthetase [Nucleoti | 99.33 | |
| COG0047 | 231 | PurL Phosphoribosylformylglycinamidine (FGAM) synt | 99.31 | |
| COG0311 | 194 | PDX2 Predicted glutamine amidotransferase involved | 99.29 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 99.28 | |
| cd01740 | 238 | GATase1_FGAR_AT Type 1 glutamine amidotransferase | 99.28 | |
| PF01174 | 188 | SNO: SNO glutamine amidotransferase family; InterP | 99.19 | |
| TIGR00313 | 475 | cobQ cobyric acid synthase CobQ. | 99.16 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 99.13 | |
| KOG1559 | 340 | consensus Gamma-glutamyl hydrolase [Coenzyme trans | 99.1 | |
| PRK13896 | 433 | cobyrinic acid a,c-diamide synthase; Provisional | 98.97 | |
| PF13507 | 259 | GATase_5: CobB/CobQ-like glutamine amidotransferas | 98.8 | |
| TIGR01857 | 1239 | FGAM-synthase phosphoribosylformylglycinamidine sy | 98.73 | |
| PRK05297 | 1290 | phosphoribosylformylglycinamidine synthase; Provis | 98.71 | |
| PLN03206 | 1307 | phosphoribosylformylglycinamidine synthase; Provis | 98.6 | |
| KOG3210 | 226 | consensus Imidazoleglycerol-phosphate synthase sub | 98.59 | |
| cd01750 | 194 | GATase1_CobQ Type 1 glutamine amidotransferase (GA | 98.58 | |
| TIGR01735 | 1310 | FGAM_synt phosphoribosylformylglycinamidine syntha | 98.47 | |
| PRK06278 | 476 | cobyrinic acid a,c-diamide synthase; Validated | 98.45 | |
| cd03130 | 198 | GATase1_CobB Type 1 glutamine amidotransferase (GA | 98.41 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 98.2 | |
| PHA03366 | 1304 | FGAM-synthase; Provisional | 97.97 | |
| TIGR01739 | 1202 | tegu_FGAM_synt herpesvirus tegument protein/v-FGAM | 97.9 | |
| cd01653 | 115 | GATase1 Type 1 glutamine amidotransferase (GATase1 | 97.89 | |
| PF04204 | 298 | HTS: Homoserine O-succinyltransferase ; InterPro: | 97.88 | |
| cd03146 | 212 | GAT1_Peptidase_E Type 1 glutamine amidotransferase | 97.81 | |
| cd03144 | 114 | GATase1_ScBLP_like Type 1 glutamine amidotransfera | 97.69 | |
| cd03131 | 175 | GATase1_HTS Type 1 glutamine amidotransferase (GAT | 97.63 | |
| PF07685 | 158 | GATase_3: CobB/CobQ-like glutamine amidotransferas | 97.62 | |
| cd03128 | 92 | GAT_1 Type 1 glutamine amidotransferase (GATase1)- | 97.5 | |
| TIGR01001 | 300 | metA homoserine O-succinyltransferase. The apparen | 97.5 | |
| PF00988 | 131 | CPSase_sm_chain: Carbamoyl-phosphate synthase smal | 97.25 | |
| TIGR01382 | 166 | PfpI intracellular protease, PfpI family. The memb | 96.71 | |
| cd03133 | 213 | GATase1_ES1 Type 1 glutamine amidotransferase (GAT | 96.56 | |
| PRK11780 | 217 | isoprenoid biosynthesis protein with amidotransfer | 96.54 | |
| PRK05282 | 233 | (alpha)-aspartyl dipeptidase; Validated | 96.51 | |
| PF09825 | 367 | BPL_N: Biotin-protein ligase, N terminal; InterPro | 96.45 | |
| cd03134 | 165 | GATase1_PfpI_like A type 1 glutamine amidotransfer | 96.33 | |
| cd03169 | 180 | GATase1_PfpI_1 Type 1 glutamine amidotransferase ( | 96.09 | |
| COG0693 | 188 | ThiJ Putative intracellular protease/amidase [Gene | 96.0 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 95.89 | |
| cd03132 | 142 | GATase1_catalase Type 1 glutamine amidotransferase | 95.83 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 95.74 | |
| KOG1907 | 1320 | consensus Phosphoribosylformylglycinamidine syntha | 95.42 | |
| cd03147 | 231 | GATase1_Ydr533c_like Type 1 glutamine amidotransfe | 95.42 | |
| PRK00090 | 222 | bioD dithiobiotin synthetase; Reviewed | 95.05 | |
| PRK11574 | 196 | oxidative-stress-resistance chaperone; Provisional | 94.8 | |
| PRK13768 | 253 | GTPase; Provisional | 94.78 | |
| PRK12374 | 231 | putative dithiobiotin synthetase; Provisional | 94.63 | |
| PRK04155 | 287 | chaperone protein HchA; Provisional | 94.48 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 94.4 | |
| PF01965 | 147 | DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T | 94.3 | |
| cd03129 | 210 | GAT1_Peptidase_E_like Type 1 glutamine amidotransf | 94.3 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 94.05 | |
| cd03137 | 187 | GATase1_AraC_1 AraC transcriptional regulators hav | 93.64 | |
| cd03148 | 232 | GATase1_EcHsp31_like Type 1 glutamine amidotransfe | 93.55 | |
| COG3442 | 250 | Predicted glutamine amidotransferase [General func | 93.39 | |
| cd03141 | 221 | GATase1_Hsp31_like Type 1 glutamine amidotransfera | 93.26 | |
| cd03140 | 170 | GATase1_PfpI_3 Type 1 glutamine amidotransferase ( | 93.12 | |
| cd03138 | 195 | GATase1_AraC_2 AraC transcriptional regulators hav | 92.84 | |
| cd03135 | 163 | GATase1_DJ-1 Type 1 glutamine amidotransferase (GA | 92.68 | |
| PRK05632 | 684 | phosphate acetyltransferase; Reviewed | 92.6 | |
| TIGR01968 | 261 | minD_bact septum site-determining protein MinD. Th | 92.39 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 92.27 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 92.21 | |
| cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). | 92.18 | |
| TIGR01383 | 179 | not_thiJ DJ-1 family protein. This model represent | 91.44 | |
| PRK11249 | 752 | katE hydroperoxidase II; Provisional | 91.1 | |
| cd03139 | 183 | GATase1_PfpI_2 Type 1 glutamine amidotransferase ( | 90.96 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 90.94 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 90.82 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 90.81 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 90.4 | |
| cd03136 | 185 | GATase1_AraC_ArgR_like AraC transcriptional regula | 90.34 | |
| PF13278 | 166 | DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M | 90.21 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 89.54 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 88.85 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 86.94 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 86.85 | |
| PRK10818 | 270 | cell division inhibitor MinD; Provisional | 86.55 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 86.36 | |
| TIGR02069 | 250 | cyanophycinase cyanophycinase. This model describe | 86.15 | |
| PRK09393 | 322 | ftrA transcriptional activator FtrA; Provisional | 86.09 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 85.98 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 85.0 | |
| TIGR00347 | 166 | bioD dethiobiotin synthase. Dethiobiotin synthase | 84.9 | |
| PRK14494 | 229 | putative molybdopterin-guanine dinucleotide biosyn | 84.84 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 84.57 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 84.25 | |
| COG1897 | 307 | MetA Homoserine trans-succinylase [Amino acid tran | 83.63 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 83.45 | |
| PF13500 | 199 | AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R | 82.04 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 81.67 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 81.6 | |
| cd02029 | 277 | PRK_like Phosphoribulokinase-like (PRK-like) is a | 80.94 | |
| cd03145 | 217 | GAT1_cyanophycinase Type 1 glutamine amidotransfer | 80.25 |
| >KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-219 Score=1693.25 Aligned_cols=557 Identities=72% Similarity=1.180 Sum_probs=547.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||+|||||||||||||+|||+|.|||++|++||+||||||||+|||||||||||||||||||+|+||||||||||||+
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYERfldi 80 (585)
T KOG2387|consen 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (585)
T ss_pred CeEEEEeCcEeecccCceeehhHHHHHHhcCceeEEEEeccceeccCcccCccccceEEEecCCceecccccchhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||||||||||||++||+|||+|||||||||||||||||||+||+|+|+||||+++.+||||||||||||||||||||+
T Consensus 81 ~Lt~dNNITtGKiy~~Vi~kER~GdYLGKTVQvvPHiTdaIq~WiervA~iPVdg~~~~pdVCvIELGGTvGDiEs~pfv 160 (585)
T KOG2387|consen 81 TLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIESMPFV 160 (585)
T ss_pred eeeccCCcccchHHHHHHhhhhccccccceeEeccchhHHHHHHHHHHhcCCcCCCCCCCCEEEEEcCceeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|||+|||||||++++.|||||||||||||+||++|+.||+|+|||.+||+.++|+|||+||+|+++|
T Consensus 161 eAl~qFq~~vg~~Nf~~iHVsLVp~l~~~gEqKTKPtQ~svr~LR~lGL~Pd~iaCRs~~~l~~~vk~Kis~FChV~~eq 240 (585)
T KOG2387|consen 161 EALRQFQFKVGRENFCLIHVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCHVGPEQ 240 (585)
T ss_pred HHHHhheecccCCcEEEEEEEEEEeccccccccCcchHHHHHHHHhcCCCcceEEEccCCCCCHHHHHHHhhhcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCC-chhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTK-EPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKA 317 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~-~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~A 317 (599)
|+++|||+++|+||++|+ |+.+++.++|+|+.... .+.|.+|+.+++++++....++||+||||+.+.|+|.|+++|
T Consensus 241 V~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~KA 320 (585)
T KOG2387|consen 241 VVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVVKA 320 (585)
T ss_pred eeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccchhhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHHHHHHH
Confidence 999999999999999999 99999999999975222 368999999999999999999999999999999999999999
Q ss_pred HHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 007533 318 LLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 397 (599)
Q Consensus 318 L~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICL 397 (599)
|+|+++++.++++|.||+|++||+++..++|.+||+||+.|+++|||+||||||+||++|||.|++|||||++|+|||||
T Consensus 321 L~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCL 400 (585)
T KOG2387|consen 321 LEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICL 400 (585)
T ss_pred HHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeee
Q 007533 398 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477 (599)
Q Consensus 398 GmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrH 477 (599)
|||+++||||||++|++||||+||+|++++|+|.+|||.+..|||||||||.+++.|++++|+++++||+...+.|||||
T Consensus 401 GmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRH 480 (585)
T KOG2387|consen 401 GMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRH 480 (585)
T ss_pred hhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999889999999988999999999
Q ss_pred eeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhhcccCC
Q 007533 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQGSGS 557 (599)
Q Consensus 478 rYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~~~~~~ 557 (599)
||||||+.+.+||..|+.|+|.+.+|+++|++|+++||||+|+||||||+|+|.+|+|+|.++++|+.++++.++++.+.
T Consensus 481 RyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~kpsp~flGlv~as~~~l~~~l~~~~~ 560 (585)
T KOG2387|consen 481 RYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDKPSPLFLGLVAASCGRLDAYLQRGCR 560 (585)
T ss_pred ceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcCCCCCCcchhHhHHHHHhhHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
|
|
| >COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-212 Score=1664.60 Aligned_cols=527 Identities=57% Similarity=0.942 Sum_probs=509.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||+|||+||++|||||||||||||||||||||||||||+||||||||||||+|+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~ 80 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDV 80 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+||++||+||||||++||+|||+|||||+|||||||||||||+||+++|+ .. +||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~------~~-~DvvivEIGGTVGDIEslpFl 153 (533)
T COG0504 81 NLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAAD------ST-ADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CccccCCccccHHHHHHHHHHhcCCccCceeEECCCcchHHHHHHHHhcC------CC-CCEEEEEeCCceecccccHHH
Confidence 99999999999999999999999999999999999999999999999996 22 999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+|||+.++|++|++||||||||||+++|||||||||||||+|||+|||||+|+|||+++++.+.|+||||||+|++++
T Consensus 154 EAiRQ~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~ 233 (533)
T COG0504 154 EAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHhhhCcccEEEEEEecceeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 318 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL 318 (599)
||+++|++|||+||+.|+ |+++.|+++|+|+ .+.++|.+|+++++++.++.+.++||+||||.++.|||+|+++||
T Consensus 234 Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~--~~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL 311 (533)
T COG0504 234 VISAPDVESIYEVPLLLEKQGLDDYILERLNLN--APEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred eEecccHHHHHHhHHHHHHcchHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHHHHHHHH
Confidence 999999999999999999 9999999999997 467899999999999999888899999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc-CCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 007533 319 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 397 (599)
Q Consensus 319 ~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICL 397 (599)
+|+|+++.++|++.||+|++++.++.+ .+. .+|||+||||||.||++|++.|++|||||++|+|||||
T Consensus 312 ~hag~~~~~~v~i~wIdse~le~~~~~-----------~~~~~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGICl 380 (533)
T COG0504 312 KHAGIALGVKVNIKWIDSEDLEEENAA-----------ELEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICL 380 (533)
T ss_pred HhhhhhcCCceeeEEEccccccccchh-----------hhhhcCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEch
Confidence 999999999999999999999875532 122 29999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCC-cCcCCCccccCceeeEEecCCchhhhccCCceeEEeeee
Q 007533 398 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 476 (599)
Q Consensus 398 GmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~-~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHr 476 (599)
|||++++||||||+|+++|||+||+|++++|||.+|||+. ...+|||||||+++|.++++ |+++++|+ ...|.||||
T Consensus 381 GmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~g-T~a~~lY~-~~~v~ERHR 458 (533)
T COG0504 381 GMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPG-TLAAKLYG-KDEIYERHR 458 (533)
T ss_pred hHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCC-cHHHHHhC-CCeeeeecc
Confidence 9999999999999999999999999999999999999964 66799999999999999999 99999997 588999999
Q ss_pred eeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcchh
Q 007533 477 HRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLD 549 (599)
Q Consensus 477 HrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~ 549 (599)
|||||||+|++++|.+|++|+|+++||.++|++|+++||||+||||||||+|+|.+|||||.+|++||.+..+
T Consensus 459 HRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~ 531 (533)
T COG0504 459 HRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKK 531 (533)
T ss_pred chhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987653
|
|
| >PLN02327 CTP synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-208 Score=1683.68 Aligned_cols=553 Identities=84% Similarity=1.361 Sum_probs=537.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCCCCCcccceEEEccCCccccccccchhhhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||+||+||||||++||+|||||||||||||||||||||||+||+++|++|||++..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeI~~~i~~~~~~~~~~~~~~~dv~i~EiGGTVGDiEs~pfl 160 (557)
T PLN02327 81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (557)
T ss_pred ccccccCCCcHHHHHHHHHHhhcCCcCCCeeEECCCcHHHHHHHHHHhccCCcccCCCCCCEEEEEeCceeecccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|||||||||||||+++|||||||||||||+|||+||+||+|+|||+++|++++|+|||+||+|++++
T Consensus 161 EA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKPtQhsvk~Lr~~Gi~pd~l~~Rs~~~l~~~~~~Kia~fc~v~~~~ 240 (557)
T PLN02327 161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240 (557)
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 318 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL 318 (599)
||+++|+++||+||++|+ |+++.|+++|+|+.+.+.++|.+|++++++++++.++++||+||||+++.|||+||.+||
T Consensus 241 Vi~~~d~~~iY~vPl~l~~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~Si~eAL 320 (557)
T PLN02327 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320 (557)
T ss_pred EEEcCCCchHhhhhHHHHHCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHHHHHHHH
Confidence 999999999999999999 999999999999721245689999999999999888999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007533 319 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 319 ~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLG 398 (599)
+|||+++.++|++.||+|+++++++..++|++|+.+|+.|+++|||++|||||+++.+|++.++++||++++|+||||+|
T Consensus 321 ~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 321 LHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400 (557)
T ss_pred HHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999999998887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe-cCCchhhhccCCceeEEeeeee
Q 007533 399 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRH 477 (599)
Q Consensus 399 mQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~-~~~s~l~~iyg~~~~I~erHrH 477 (599)
||+|+++|||||+||++|||+||++++++|+|.+||+++...+|||||||.+++.+. ++ |++.++|+....|++||||
T Consensus 401 mQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~-S~l~~iYg~~~~VnerHrH 479 (557)
T PLN02327 401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPD-CKSAKLYGNVSFVDERHRH 479 (557)
T ss_pred HHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcccccCCCC-CHHHHHhCCccceeeeecc
Confidence 999999999999999999999999999999999999998889999999999999998 66 9999999755568999999
Q ss_pred eeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhhcc
Q 007533 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQG 554 (599)
Q Consensus 478 rYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~~~ 554 (599)
||+|||++++++++.|+.++|+++||.+||++|+++||||+|||||||+.++|.+|+|||.+|++||.+++++++++
T Consensus 480 RYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~~~~~~~~ 556 (557)
T PLN02327 480 RYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQLDAVLNS 556 (557)
T ss_pred ccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHHHHHHhHHhhhcC
Confidence 99999999999989999999999999889999999999999999999999999999999999999999988876653
|
|
| >PRK05380 pyrG CTP synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-197 Score=1593.68 Aligned_cols=526 Identities=56% Similarity=0.949 Sum_probs=508.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~~~ 81 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDT 81 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++| .+|||||||||||||||||+||+
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~ylG~tvQviPHit~eI~~~i~~~~--------~~~dv~i~EiGGTvGDiEs~pf~ 153 (533)
T PRK05380 82 NLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG--------TDADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CCccccccchHHHHHHHHHHhhccCccCceEEEccCccHHHHHHHHhcC--------CCCCEEEEEeCCccccccccHHH
Confidence 9999999999999999999999999999999999999999999999998 47899999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||+|||||+|+|||+++|++++|+|||+||+|++++
T Consensus 154 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd~i~~R~~~~l~~~~~~Kia~fc~v~~~~ 233 (533)
T PRK05380 154 EAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 318 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL 318 (599)
||+++|++|||+||++|+ |+++.|+++|+|+ .+.++|.+|+++++++.++.++++||+||||+++.|||.|+.+||
T Consensus 234 vi~~~d~~~iy~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL 311 (533)
T PRK05380 234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGLE--APEPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred EEEcCCCccHHhhhHHHHHCCCHHHHHHHcCCC--CCCCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHH
Confidence 999999999999999999 9999999999997 467789999999999999988999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007533 319 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 319 ~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLG 398 (599)
+|+|+++.++|.+.||+++++++++ +++.|+++|||++|||||+++.++++.++++|+++++|+||||+|
T Consensus 312 ~hag~~~~~~v~i~wIdse~l~~~~----------~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 312 KHAGIANDVKVNIKWIDSEDLEEEN----------VAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HHHHHHcCCeeEEEEEChhhccCcc----------hhhHhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 9999999999999999999987543 346799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCC-cCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeee
Q 007533 399 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477 (599)
Q Consensus 399 mQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~-~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrH 477 (599)
||+|+++|||+++|+++|+|+||++++++|+|.+|+++. ..++|||||+|.|+|.+.++ |+++++|+ +..+.|||||
T Consensus 382 mQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g-S~l~~iyg-~~~i~ErhrH 459 (533)
T PRK05380 382 MQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG-TLAAEIYG-KEEIYERHRH 459 (533)
T ss_pred HHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC-ChHHHHhC-CCceeeeccc
Confidence 999999999999999999999999999999999999964 56899999999999999998 99999996 6678999999
Q ss_pred eeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcch
Q 007533 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 478 rYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 548 (599)
||+||+.+.+.++..||+++|+++||.++|++|+++||||+|||||||+.++|.+++|||.+|++||.++.
T Consensus 460 ryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~~ 530 (533)
T PRK05380 460 RYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENK 530 (533)
T ss_pred ceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHh
Confidence 99999999999988999999999988779999999999999999999999999999999999999997643
|
|
| >TIGR00337 PyrG CTP synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-195 Score=1578.19 Aligned_cols=522 Identities=58% Similarity=0.968 Sum_probs=503.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||++||+|++||||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~ 80 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~G~ylG~tvQviPHvt~ei~~~i~~~~~------~~~~d~~i~EiGGTvGDiEs~pf~ 154 (525)
T TIGR00337 81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAK------ISGPDVVIVEIGGTVGDIESLPFL 154 (525)
T ss_pred CCcCCCCCChHHHHHHHHHHhhcCCcCCCeEEECCCCcHHHHHHHHHhcc------cCCCCEEEEEeCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999995 468999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||+|||||+|+|||+++|++++|+|||+||+|+.++
T Consensus 155 ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQhsv~~lr~~Gi~pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~ 234 (525)
T TIGR00337 155 EAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEA 234 (525)
T ss_pred HHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 318 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL 318 (599)
||+++|+++||+||++|+ |+++.|+++|+|+ .+.++|.+|.++++++.++.++++||+||||+++.|+|.||++||
T Consensus 235 vi~~~d~~~iY~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~SI~eAL 312 (525)
T TIGR00337 235 VINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLN--CDEADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEAL 312 (525)
T ss_pred EEEcCCCccHhhhhHHHHHCChHHHHHHHhCCC--CCCCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 999999999999999999 9999999999997 356689999999999999888999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007533 319 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 319 ~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLG 398 (599)
+|+|+++.+++.+.|+++++++..+. +.|+++|||++|||||+++.++++.++++++++++|+||||+|
T Consensus 313 ~~ag~~~~~~V~~~~i~se~i~~~~~-----------~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 313 KHAGAKLDTKVNIKWIDSEDLEEEGA-----------EFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred HhCccccCCEEEEEEecHHHhhhhhh-----------hhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999998754221 3588999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCC-cCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeee
Q 007533 399 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477 (599)
Q Consensus 399 mQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~-~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrH 477 (599)
||+|++++||||+||++|+|+||++++++||+.+||++. ..++|||||||+|++.+.++ |+++++|+ ...+.+||||
T Consensus 382 ~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~g-S~L~~iyG-~~~i~erhrH 459 (525)
T TIGR00337 382 MQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG-TLAFKLYG-KEEVYERHRH 459 (525)
T ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCC-ChHHHHhC-CCceeecccc
Confidence 999999999999999999999999999999999999975 68999999999999999998 99999997 4567899999
Q ss_pred eeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 478 rYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
||+||+.+.+.++..||+++|+++||.++|++|+++||||+|||||||+.++|.+++|||.+|++|
T Consensus 460 ry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~A 525 (525)
T TIGR00337 460 RYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVKA 525 (525)
T ss_pred eEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHhC
Confidence 999999999999889999999999976799999999999999999999999999999999999975
|
CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). |
| >PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-140 Score=1056.15 Aligned_cols=274 Identities=65% Similarity=1.079 Sum_probs=234.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||++||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYERFLDI 80 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHHHHHTS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||+||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~------~~~~Dv~iiEiGGTVGDIEs~pFl 154 (276)
T PF06418_consen 81 NLTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAK------KPEPDVVIIEIGGTVGDIESLPFL 154 (276)
T ss_dssp ---GGGEEEHHHHHHHHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHC------CCT-SEEEEEEESETTSCCCHHHH
T ss_pred CCcccccccHHHHHHHHHHHHhcCcccCceeeecchHHHHHHHHHHHhcC------CCCCCEEEEecCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999999996 448999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|+||||||||||++++||+||||||||||+||++|||||+|+|||+++|+++.|+|||+||+|++++
T Consensus 155 EAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilvcRs~~~l~~~~k~KIalFc~V~~e~ 234 (276)
T PF06418_consen 155 EAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILVCRSERPLDEEIKEKIALFCNVPPEN 234 (276)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEEEEESS---HHHHHHHHHHCTS-GGG
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEEEcCCCCCCHHHHHHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEW 282 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W 282 (599)
||+++|+++||+||++|+ |+++.|+++|+|+ .+.++|++|
T Consensus 235 VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~L~--~~~~dl~~W 276 (276)
T PF06418_consen 235 VISAPDVSSIYEVPLLLEEQGLDEYILKRLNLE--KKEPDLSEW 276 (276)
T ss_dssp EEEEE--SSCCHHHHHHHHTTHHHHHHHHTT----------HHH
T ss_pred EEEcCCcccHHHHHHHHHHcCcHHHHHHHcCcC--CCCCCcccC
Confidence 999999999999999999 9999999999998 577899999
|
The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B. |
| >cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-131 Score=983.99 Aligned_cols=251 Identities=62% Similarity=1.045 Sum_probs=248.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~ 81 (599)
|||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||++
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHHH
Q 007533 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (599)
Q Consensus 82 l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~e 161 (599)
|||+||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..++||||||||||||||||+||+|
T Consensus 81 l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~------~~~~dv~i~EiGGTvGDiEs~pf~E 154 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAE------KSGADVVIVEIGGTVGDIESLPFLE 154 (255)
T ss_pred CcCccCcChHHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhc------cCCCCEEEEEeCCccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999995 4689999999999999999999999
Q ss_pred HHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCe
Q 007533 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241 (599)
Q Consensus 162 a~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~V 241 (599)
|+|||++++|++|+||||||||||++++||||||||||||++||+.||+||+||||++.+++++.++|||+||+|+.++|
T Consensus 155 Airq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFcnVpve~V 234 (255)
T cd03113 155 AIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAV 234 (255)
T ss_pred HHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCccchhHHHH
Q 007533 242 ITLYDVPNIWHIPLLLR 258 (599)
Q Consensus 242 i~~~dv~tiy~vPl~L~ 258 (599)
|..+|++++|+||++|+
T Consensus 235 I~~~d~~~iY~vPl~l~ 251 (255)
T cd03113 235 ISAPDVDNIYEVPLLLE 251 (255)
T ss_pred eecCCCcchhhccHHHH
Confidence 99999999999999987
|
The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain. |
| >PRK06186 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=506.14 Aligned_cols=228 Identities=36% Similarity=0.565 Sum_probs=212.9
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
+++||+||||++++|||+||++||+|+|+++.++|++.||++++++++ ..|+++|||+||||||.||
T Consensus 1 ~v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-------------~~l~~~dgilvpgGfg~rg 67 (229)
T PRK06186 1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDP-------------EDLAGFDGIWCVPGSPYRN 67 (229)
T ss_pred CcEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCCh-------------hhHhhCCeeEeCCCCCccc
Confidence 479999999999999999999999999999999999999999998752 2589999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 375 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
++|++.+++|||++++|+||||||||+++++||||++|++||+|+||++++++|+|.+||. ....+ .|+|.+
T Consensus 68 ~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~-~~~~~-------~h~v~l 139 (229)
T PRK06186 68 DDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSC-SLVEK-------TGDIRL 139 (229)
T ss_pred HhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECcc-ccccC-------ceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999983 22222 378999
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCch
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~ 534 (599)
.++ |+++++|| +..+.+||||||+||+.+.+.++..||+++|+++||. ||++|+++||||+|||||||+.++|.+++
T Consensus 140 ~~~-S~l~~iyg-~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~-iEaiE~~~hpf~lGVQwHPE~~s~~~~~~ 216 (229)
T PRK06186 140 RPG-SLIARAYG-TLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGD-VRAVELPGHPFFVATLFQPERAALAGRPP 216 (229)
T ss_pred CCC-CHHHHHhC-CCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCC-EEEEEeCCCCcEEEEeCCCCccCCCCCCC
Confidence 998 89999996 5678899999999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 007533 535 PLFLGLIAAACG 546 (599)
Q Consensus 535 pLF~~Fv~aa~~ 546 (599)
|||.+|++||.+
T Consensus 217 ~LF~~Fv~aa~~ 228 (229)
T PRK06186 217 PLVRAFLRAARA 228 (229)
T ss_pred HHHHHHHHHHhc
Confidence 999999999865
|
|
| >cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=377.50 Aligned_cols=233 Identities=62% Similarity=1.046 Sum_probs=213.6
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
++||+||||+++.|+|.|++++|.+++.+...++.+.|+++++++..+. ++.|.++|||++||||+.+..
T Consensus 1 ~~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~----------~~~l~~~dgivl~GG~~~~~~ 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENA----------EEALKGADGILVPGGFGIRGV 70 (235)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccch----------hhhhccCCEEEECCCCCCcch
Confidence 5899999999999999999999999999998899999999987754321 246889999999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCC-CcCcCCCccccCceeeEE
Q 007533 376 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~-~~~~~GgtmrLG~~~v~l 454 (599)
++.+.++++++++++|+||||+|||+|+.+||+++++++++++.|+++.+.+|++.+|.+. ...++|+|||||.|.+.+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i 150 (235)
T cd01746 71 EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL 150 (235)
T ss_pred hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999874 577889999999999999
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC-CCCeEEEEEeCCCCeEEEEcccCCCcCCCCCc
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 533 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~-dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p 533 (599)
.++ |++.++|+ +..+.++|+|+|+||++++..+...|++++|++. ||. +|++|+++||||+|||||||+.+.+.++
T Consensus 151 ~~~-s~l~~~~g-~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~-ieaie~~~~pf~lgvQ~HPE~~~~~~~~ 227 (235)
T cd01746 151 KPG-TLAHKYYG-KDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGL-VEIVELPDHPFFVGTQFHPEFKSRPLKP 227 (235)
T ss_pred CCC-ChHHHHhC-CCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCe-EEEEEcCCCCcEEEEECCCCCcCCCCCc
Confidence 998 89999996 5567789999999999999876689999999999 565 9999999999999999999999999889
Q ss_pred hHHHHHHH
Q 007533 534 SPLFLGLI 541 (599)
Q Consensus 534 ~pLF~~Fv 541 (599)
++||.+|+
T Consensus 228 ~~lF~~fv 235 (235)
T cd01746 228 HPLFVGFV 235 (235)
T ss_pred cHHHHHhC
Confidence 99999995
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th |
| >COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=326.76 Aligned_cols=278 Identities=18% Similarity=0.244 Sum_probs=215.0
Q ss_pred hhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHc-CCCCCCCchh
Q 007533 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVL-NLQGTTKEPL 278 (599)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l-~l~~~~~~~~ 278 (599)
.+.||.++++.++|+|+....++|||++.||..|++.++|+++.++|||. +.+.|| |.|++.+..- .+++......
T Consensus 67 ~d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTRa-Ltr~iR~~G~m~~~I~~~~~~~~~~~~~~ 145 (368)
T COG0505 67 EDFESDRIHAAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTRA-LTRKIREKGAMKGVIATGPELDPAKLLER 145 (368)
T ss_pred hhccccCceEEEEEEcccccccCccccccCHHHHHHHcCCCceecccHHH-HHHHHHhcCCcceEeecCcccChHHHHHH
Confidence 57899999999999999999999999999999999999999999999996 668888 8888743211 1110000001
Q ss_pred hHHHHH-----HHhhhcC------------CCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCC
Q 007533 279 LKEWTS-----RAEICDG------------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED 341 (599)
Q Consensus 279 l~~W~~-----l~~~~~~------------~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~ 341 (599)
...|.. +++.++. .....+|+++ ||+ .+.+|++.|...|+++.+ ++.+.-
T Consensus 146 ~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~i-D~G----vK~nIlr~L~~rg~~vtV------VP~~t~-- 212 (368)
T COG0505 146 ARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVI-DFG----VKRNILRELVKRGCRVTV------VPADTS-- 212 (368)
T ss_pred HhhcCCCCcccccceeecCCceeccccccCCCCCcEEEEE-EcC----ccHHHHHHHHHCCCeEEE------EcCCCC--
Confidence 111211 2222111 2235789999 698 889999999999999876 343321
Q ss_pred ccccCCchhhhHHHHh-ccCCCEEEeCCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCcc
Q 007533 342 ATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 419 (599)
Q Consensus 342 ~~~~~~p~~y~~a~~~-L~~~DGIlVPGGfG~rg-~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~ 419 (599)
+.+. -.++|||+|++|||+|. .+..+.+++...+.++|+||||||||+++.|+|+++++|+.
T Consensus 213 ------------~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkF---- 276 (368)
T COG0505 213 ------------AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKF---- 276 (368)
T ss_pred ------------HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeeccc----
Confidence 1233 36899999999999995 47789999999999999999999999999999999999873
Q ss_pred ccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEE
Q 007533 420 EFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGK 499 (599)
Q Consensus 420 Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~ 499 (599)
+|+|. +|||.-... ++..| +.|||.|+|+++.+. ... +++..
T Consensus 277 -------------------GHrG~-----NhPV~dl~t---------grv~I-TSQNHGyaVd~~s~~---~~~-~vth~ 318 (368)
T COG0505 277 -------------------GHRGA-----NHPVKDLDT---------GRVYI-TSQNHGYAVDEDSLV---ETL-KVTHV 318 (368)
T ss_pred -------------------CCCCC-----CcCcccccC---------CeEEE-EecCCceecChhhcC---CCc-eeEEE
Confidence 67775 688764432 35556 689999999998432 222 78888
Q ss_pred eCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcch
Q 007533 500 DETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 500 s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 548 (599)
+.++..+|++++++.|.| +||||||.++.|+|.++||..|++.+.+..
T Consensus 319 nlnDgTvEGi~h~~~P~f-SVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 319 NLNDGTVEGIRHKDLPAF-SVQYHPEASPGPHDTRYLFDEFIELMEAAK 366 (368)
T ss_pred eCCCCCccceecCCCceE-EEccCCCCCCCCcccHHHHHHHHHHHHHhh
Confidence 865555999999999965 999999999999999999999999987643
|
|
| >PRK12564 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=313.35 Aligned_cols=271 Identities=18% Similarity=0.261 Sum_probs=203.0
Q ss_pred hhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhH
Q 007533 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLK 280 (599)
Q Consensus 203 ~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~ 280 (599)
+++|.++++.++|||+....+++|+++.+|..|++.++|+++.+||||+ +.+.|| |.|++++..-..+.......+.
T Consensus 69 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR~-l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~ 147 (360)
T PRK12564 69 DFESDRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTRA-LTRKLREKGAMKGVIATEDFDAEELLEKAR 147 (360)
T ss_pred ccccCCccEEEEEECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHHH-HHHHHHhcCCceEEEecCCCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999995 778899 9888654321111000011222
Q ss_pred HH-----HHHHhhhcCC------C----CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCcccc
Q 007533 281 EW-----TSRAEICDGL------H----EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK 345 (599)
Q Consensus 281 ~W-----~~l~~~~~~~------~----~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~ 345 (599)
.| .+++..++.. . ...+|+++ ||+ ...|++++|+.+|+.+.+ ++.+. ..
T Consensus 148 ~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~I~vi-D~G----~k~nivr~L~~~G~~v~v------vp~~~-~~---- 211 (360)
T PRK12564 148 AFPGLLGLDLVKEVSTKEPYPWPGPGGELKYKVVAI-DFG----VKRNILRELAERGCRVTV------VPATT-TA---- 211 (360)
T ss_pred cCCCCcccCCcceeCCCCCEECCCCCCCCCCEEEEE-eCC----cHHHHHHHHHHCCCEEEE------EeCCC-CH----
Confidence 23 2344444321 1 14689999 587 567999999999987644 22211 00
Q ss_pred CCchhhhHHHHhc-cCCCEEEeCCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCC
Q 007533 346 ENPDAYKAAWKLL-KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 423 (599)
Q Consensus 346 ~~p~~y~~a~~~L-~~~DGIlVPGGfG~rg-~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~ 423 (599)
.+.. .++|||||+||||++. ....+.+++++.++++|+||||+|||+|+.++|+++.+++.
T Consensus 212 ---------~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~~-------- 274 (360)
T PRK12564 212 ---------EEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKF-------- 274 (360)
T ss_pred ---------HHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccCC--------
Confidence 0111 2799999999999975 36678899999998999999999999999999999876432
Q ss_pred CCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC-C
Q 007533 424 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-T 502 (599)
Q Consensus 424 ~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~-d 502 (599)
+|.|. ++++..... ++..+ .+|+|+|+|+++.+ +.++++++++. |
T Consensus 275 ---------------gh~G~-----~~pv~~~~~---------~~~~i-ts~~H~~~V~~~~l----p~~l~v~a~~~~D 320 (360)
T PRK12564 275 ---------------GHRGA-----NHPVKDLET---------GKVEI-TSQNHGFAVDEDSL----PANLEVTHVNLND 320 (360)
T ss_pred ---------------CccCC-----ceeeEECCC---------CcEEE-EecCcccEEccccc----CCceEEEEEeCCC
Confidence 23343 466654332 12233 57889999987654 56899999985 6
Q ss_pred CCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 503 SQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 503 g~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
+. +|+++++++|+ +|||||||..++|.+..+||.+|++.
T Consensus 321 g~-iegi~~~~~pi-~gVQfHPE~~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 321 GT-VEGLRHKDLPA-FSVQYHPEASPGPHDSAYLFDEFVEL 359 (360)
T ss_pred Cc-EEEEEECCCCE-EEEEeCCcCCCCCCCHHHHHHHHHHh
Confidence 65 99999999996 59999999999999999999999975
|
|
| >TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=309.51 Aligned_cols=274 Identities=20% Similarity=0.283 Sum_probs=202.8
Q ss_pred hhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhh
Q 007533 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLL 279 (599)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l 279 (599)
.+++|..+++.++|||+....+++||++.+|..|++.++|+++.+||||+ +.+.|| |.|++++..-..+.......+
T Consensus 64 ~~~es~~~~~~g~iv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR~-lt~~iR~~G~~~~~i~~~~~~~~~~~~~~ 142 (358)
T TIGR01368 64 EDAESKGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTRA-LVKKIREKGTMKGVISTEDSNDEELVQKA 142 (358)
T ss_pred hhhcccCCcEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHHH-HHHHHHhcCCeeEEEecCCCChHHHHHHH
Confidence 35799999999999999999999999999999999999999999999995 778999 988865432111100000011
Q ss_pred HHHH-----HHHhhhcCC----------CCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccc
Q 007533 280 KEWT-----SRAEICDGL----------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 344 (599)
Q Consensus 280 ~~W~-----~l~~~~~~~----------~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~ 344 (599)
..|. +++..++.. ....+|+++ ||+ ...|++++|+.+|+.+.+ +.|-. ++
T Consensus 143 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~i~vi-D~G----~k~ni~~~L~~~G~~v~v---vp~~~--~~----- 207 (358)
T TIGR01368 143 SVSPDIDGINLVAEVSTKEPYTWGQKRGGKKKRVVVI-DFG----VKQNILRRLVKRGCEVTV---VPYDT--DA----- 207 (358)
T ss_pred HhCCCCccCCccceeccCCCEEeCCCCCCCccEEEEE-eCC----cHHHHHHHHHHCCCEEEE---EcCCC--CH-----
Confidence 1221 234333311 112589999 687 667999999999987744 12211 11
Q ss_pred cCCchhhhHHHHhc-cCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccC
Q 007533 345 KENPDAYKAAWKLL-KGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD 422 (599)
Q Consensus 345 ~~~p~~y~~a~~~L-~~~DGIlVPGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~ 422 (599)
.+.. ..+|||||+||||++.. ...+..++++.+ ++|+||||||||+|+.++|+++.+++.
T Consensus 208 ----------~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~~------- 269 (358)
T TIGR01368 208 ----------EEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMKF------- 269 (358)
T ss_pred ----------HHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccCc-------
Confidence 0122 24699999999999854 567888999987 999999999999999999999876432
Q ss_pred CCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC-
Q 007533 423 PNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE- 501 (599)
Q Consensus 423 ~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~- 501 (599)
+|.|. ++|+..... ++..+ .+++|+|+|+++.+. ..++++++++.
T Consensus 270 ----------------gh~G~-----nhpV~~~~~---------~~v~i-tsqnH~~aV~~~~l~---~~~l~vta~~~n 315 (358)
T TIGR01368 270 ----------------GHRGG-----NHPVKDLIT---------GRVEI-TSQNHGYAVDPDSLP---AGDLEVTHVNLN 315 (358)
T ss_pred ----------------CcCCC-----ceeeEECCC---------CcEEE-eecCCCcEEcccccC---CCceEEEEEECC
Confidence 34443 566654332 12223 467899999876541 36899999985
Q ss_pred CCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHh
Q 007533 502 TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAAC 545 (599)
Q Consensus 502 dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~ 545 (599)
||. +|+++++++|+ +|||||||..+.|.+..+||.+|++++.
T Consensus 316 Dg~-Vegi~h~~~pi-~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 316 DGT-VEGIRHKDLPV-FSVQYHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred CCc-EEEEEECCCCE-EEEEECCCCCCCCCChHHHHHHHHHHhh
Confidence 565 99999999995 5999999999999999999999998874
|
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. |
| >PRK12838 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=302.84 Aligned_cols=272 Identities=19% Similarity=0.216 Sum_probs=203.0
Q ss_pred hhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhH
Q 007533 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLK 280 (599)
Q Consensus 203 ~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~ 280 (599)
+++|.++++.++|||+....+++||++.+|..|++.++|+++.++|||. +.+.|| |.|++++..-. +. .....+.
T Consensus 67 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR~-lt~~lR~~G~~~~~i~~~~-~~-~~~~~~~ 143 (354)
T PRK12838 67 DYESKQPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTRA-LVKHIREKGTMKASITTTD-DA-HAFDQIK 143 (354)
T ss_pred hhcccCceEEEEEECcCCCCCCcccccCCHHHHHHHCCCCcccCCCHHH-HHHHHHHcCCceEEEecCC-cH-HHHHHHH
Confidence 6899999999999999999999999999999999999999999999995 778999 98886543211 10 0011222
Q ss_pred HH---HHHHhhhcCC------CCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhh
Q 007533 281 EW---TSRAEICDGL------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY 351 (599)
Q Consensus 281 ~W---~~l~~~~~~~------~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y 351 (599)
.| .+++..++.. ....+|+++ ||+ .+.+++++|+.+|+.+.+. .| +. +++
T Consensus 144 ~~~~~~~~v~~vs~~~~~~~~~~~~~V~vi-D~G----~k~ni~~~L~~~G~~v~vv---p~-~~-~~~----------- 202 (354)
T PRK12838 144 ALVLPKNVVAQVSTKEPYTYGNGGKHVALI-DFG----YKKSILRSLSKRGCKVTVL---PY-DT-SLE----------- 202 (354)
T ss_pred hhhccCCcccEEEcCCCEEeCCCCCEEEEE-CCC----HHHHHHHHHHHCCCeEEEE---EC-CC-CHH-----------
Confidence 22 2344444422 224689999 586 7899999999999876441 12 11 110
Q ss_pred hHHHHh-ccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCe
Q 007533 352 KAAWKL-LKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPC 429 (599)
Q Consensus 352 ~~a~~~-L~~~DGIlVPGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~v 429 (599)
+. -.++|||||+||||++.. ...+.+++.+.++ +|+||||||||+|+.++|+++.+++.
T Consensus 203 ----~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~~-------------- 263 (354)
T PRK12838 203 ----EIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLPF-------------- 263 (354)
T ss_pred ----HHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCCC--------------
Confidence 11 137999999999999754 4467788888876 99999999999999999999976432
Q ss_pred eeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC-CCCeEEE
Q 007533 430 VIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-TSQRMEI 508 (599)
Q Consensus 430 i~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~-dg~~vE~ 508 (599)
+|.|+ ++++..... ++.. ..+++|+|+++++.+. ..++.+++.+. |+. +|+
T Consensus 264 ---------gh~G~-----~hpV~~~~~---------~~~~-~ts~~H~~aV~~~sl~---~~~l~v~a~~~~Dg~-Vea 315 (354)
T PRK12838 264 ---------GHRGA-----NHPVIDLTT---------GRVW-MTSQNHGYVVDEDSLD---GTPLSVRFFNVNDGS-IEG 315 (354)
T ss_pred ---------CccCC-----ceEEEECCC---------CeEE-EeccchheEecccccC---CCCcEEEEEECCCCe-EEE
Confidence 23343 577765443 1222 2467899999875432 34688999864 555 999
Q ss_pred EEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhc
Q 007533 509 VELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 509 iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
++++++| ++|||||||+.++|.+..+||.+|++++.+
T Consensus 316 i~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 316 LRHKKKP-VLSVQFHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred EEECCCC-EEEEEeCCCCCCCCccHHHHHHHHHHHHHh
Confidence 9999999 569999999999999899999999998854
|
|
| >CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-32 Score=293.29 Aligned_cols=276 Identities=18% Similarity=0.260 Sum_probs=197.9
Q ss_pred hhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhh
Q 007533 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLL 279 (599)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l 279 (599)
.+++|.+++..++|||+....+++||++.+|..|+..++|+++.+||||. +.+.|| |.|++++..-..+.......+
T Consensus 70 ~~~es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR~-lt~~iR~~G~~~g~i~~~~~~~~~~~~~~ 148 (382)
T CHL00197 70 EDIESVKIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTRA-LTQHLRRFGTMNGCISNQNLNLSYLRAKI 148 (382)
T ss_pred hhhcccCccEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHHH-HHHHHHhcCCceEEEEcCCCChHHHHHHH
Confidence 46899999999999999999999999999999999999999999999995 778899 888755432111100000011
Q ss_pred HHH-----HHHHhhhcC-----------------------CCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEE
Q 007533 280 KEW-----TSRAEICDG-----------------------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVI 331 (599)
Q Consensus 280 ~~W-----~~l~~~~~~-----------------------~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i 331 (599)
..| .+++..++. +....+|+++ |++ ...++++.|+.+|+++.+
T Consensus 149 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vi-D~g----~k~ni~~~L~~~G~~v~v---- 219 (382)
T CHL00197 149 KESPHMPSSDLIPRVTTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVI-DFG----VKYNILRRLKSFGCSITV---- 219 (382)
T ss_pred HcCCCCccCCccceecCCCCEEecCCCccccccccccccccCCCCEEEEE-ECC----cHHHHHHHHHHCCCeEEE----
Confidence 111 223333221 0124789999 575 457899999999987644
Q ss_pred EEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc
Q 007533 332 DWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 410 (599)
Q Consensus 332 ~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~V 410 (599)
++.. ... ++ -...++||||++||||++.. ...+..++.+.+.++|+||||||||+|+.++|+++
T Consensus 220 --vp~~-~~~----------~~--i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v 284 (382)
T CHL00197 220 --VPAT-SPY----------QD--ILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKT 284 (382)
T ss_pred --EcCC-CCH----------HH--HhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCEE
Confidence 2221 100 00 01237999999999999864 44566777777779999999999999999999998
Q ss_pred ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhc
Q 007533 411 LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLE 490 (599)
Q Consensus 411 lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le 490 (599)
.+++. +|.|. ++++.+. ++..+ ..++|+|.++++.+..
T Consensus 285 ~k~~~-----------------------Gh~g~-----n~pv~~~-----------~~v~i-tsq~H~~~v~~~sv~~-- 322 (382)
T CHL00197 285 FKLKF-----------------------GHRGL-----NHPSGLN-----------QQVEI-TSQNHGFAVNLESLAK-- 322 (382)
T ss_pred eccCC-----------------------CCCCC-----CEecCCC-----------CceEE-eecchheEeeccccCC--
Confidence 65431 23332 4444311 12223 3567999998876532
Q ss_pred cCCeEEEEEe-CCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 007533 491 NAGLSFTGKD-ETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQ 547 (599)
Q Consensus 491 ~~Gl~~sa~s-~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 547 (599)
.++.+++.+ .|+. +|+++++++|+ +|||||||+.+.|.+..++|.+|++.+.+.
T Consensus 323 -~~~~vt~~~~nDgt-vegi~h~~~pi-~gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 323 -NKFYITHFNLNDGT-VAGISHSPKPY-FSVQYHPEASPGPHDADYLFEYFIEIIKHS 377 (382)
T ss_pred -CCcEEEEEECCCCC-EEEEEECCCCc-EEEeeCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 368888876 4666 99999999996 599999999999998889999999988653
|
|
| >PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-32 Score=291.58 Aligned_cols=265 Identities=19% Similarity=0.250 Sum_probs=193.8
Q ss_pred hhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHcCC-CCCCCchh
Q 007533 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVLNL-QGTTKEPL 278 (599)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l-~~~~~~~~ 278 (599)
.+.+|.++++.++|||+....+++||++.+|..|+++++|+++.+||||. +.+.|| |.|++++..-+. +.......
T Consensus 120 ~d~ES~~~~~~G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTRa-Lt~~iR~~G~m~g~i~~~~~~~~~~~~~~ 198 (415)
T PLN02771 120 DDEESRQCFLAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTRA-ITRRLREDGSLIGVLSTEDSKTDEELLKM 198 (415)
T ss_pred hhhcccCCcEEEEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHHH-HHHHHHhcCCeeEEEecCCCCCHHHHHHH
Confidence 36799999999999999999999999999999999999999999999995 778899 888765432111 00000001
Q ss_pred hHHH----HHHHhhhcCC---------------------CCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEE
Q 007533 279 LKEW----TSRAEICDGL---------------------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDW 333 (599)
Q Consensus 279 l~~W----~~l~~~~~~~---------------------~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~w 333 (599)
+..| .+++..++.. ....+|+++ +|+ +..+|++.|...|+.+.+
T Consensus 199 ~~~~~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivvi-D~G----~K~nIlr~L~~~G~~v~V------ 267 (415)
T PLN02771 199 SRSWDIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAY-DFG----IKHNILRRLASYGCKITV------ 267 (415)
T ss_pred HHhCCCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEE-CCC----hHHHHHHHHHHcCCeEEE------
Confidence 1222 1233332210 112689999 588 789999999999988755
Q ss_pred ecCCCCCCccccCCchhhhHHHHh-ccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccc
Q 007533 334 IPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVL 411 (599)
Q Consensus 334 i~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlVPGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vl 411 (599)
++.+.- +.+. ..++|||||+||||++.. ...++.++.+. .++|+||||||||+|+.++|+++.
T Consensus 268 vP~~~~--------------~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~ 332 (415)
T PLN02771 268 VPSTWP--------------ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKTF 332 (415)
T ss_pred ECCCCC--------------HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEE
Confidence 222110 1122 247999999999999854 34556666655 479999999999999999999997
Q ss_pred cccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhcc
Q 007533 412 NLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLEN 491 (599)
Q Consensus 412 gl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~ 491 (599)
+++. +|.|+ ++|+..... +...+ ..++|+|+|+++.+ +
T Consensus 333 K~~~-----------------------Gh~G~-----n~pV~~~~~---------~~v~i-tsqnHg~aVd~~sL----p 370 (415)
T PLN02771 333 KMKF-----------------------GHHGG-----NHPVRNNRT---------GRVEI-SAQNHNYAVDPASL----P 370 (415)
T ss_pred ECCC-----------------------Ccccc-----eEEEEECCC---------CCEEE-EecCHHHhhccccC----C
Confidence 6542 45554 577654332 12223 46889999987654 5
Q ss_pred CCeEEEEEeC-CCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHH
Q 007533 492 AGLSFTGKDE-TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 537 (599)
Q Consensus 492 ~Gl~~sa~s~-dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF 537 (599)
.++++++.+. |+. +|++++++.|+ +|||||||..+.|+|..++|
T Consensus 371 ~~~~vt~~nlnDgt-vegi~~~~~pi-~gVQFHPEa~pgp~Ds~~~F 415 (415)
T PLN02771 371 EGVEVTHVNLNDGS-CAGLAFPALNV-MSLQYHPEASPGPHDSDNAF 415 (415)
T ss_pred CceEEEEEeCCCCc-EEEEEECCCCE-EEEEcCCCCCCCCCcChhhC
Confidence 6899999874 565 99999999996 59999999999999998876
|
|
| >PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group [] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=224.84 Aligned_cols=181 Identities=29% Similarity=0.435 Sum_probs=136.1
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-hhHHHHHHHHHHHcCC
Q 007533 312 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQGKILAAKYAREHRI 390 (599)
Q Consensus 312 ~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg-~eg~i~aik~are~~i 390 (599)
.|+.++|+..|+.+ ++.|++++.. ..++.+.++|||||+||++++. .+..+.+++++++.++
T Consensus 11 ~~l~~~l~~~~~~~----~v~~~~~~~~-------------~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~ 73 (192)
T PF00117_consen 11 HSLVRALRELGIDV----EVVRVDSDFE-------------EPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKI 73 (192)
T ss_dssp HHHHHHHHHTTEEE----EEEETTGGHH-------------HHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCeE----EEEECCCchh-------------hhhhhhcCCCEEEECCcCCccccccccccccccccccce
Confidence 37888888888654 4556654211 1112488999999999999988 7899999999999999
Q ss_pred CEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCcee
Q 007533 391 PYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTF 470 (599)
Q Consensus 391 P~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~ 470 (599)
|+||||+|||+|+.++|++|...+ ..++.||++.+ ...+.+.++..+ ...
T Consensus 74 PilGIC~G~Q~la~~~G~~v~~~~----------------------~~~~~g~~~~~-----~~~~~~~~~~~~---~~~ 123 (192)
T PF00117_consen 74 PILGICLGHQILAHALGGKVVPSP----------------------EKPHHGGNIPI-----SETPEDPLFYGL---PES 123 (192)
T ss_dssp EEEEETHHHHHHHHHTTHEEEEEE----------------------SEEEEEEEEEE-----EEEEEHGGGTTS---TSE
T ss_pred EEEEEeehhhhhHHhcCCcccccc----------------------ccccccccccc-----cccccccccccc---ccc
Confidence 999999999999999999985321 12455665443 222111233332 345
Q ss_pred EEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 471 IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 471 I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
...++.|+|.|++. .+.+.|++++|++.++..++++.+.++| ++|+|||||+++++.++.+|+..|++|
T Consensus 124 ~~~~~~H~~~v~~~---~~~p~~~~~la~s~~~~~~~~~~~~~~~-i~g~QfHPE~~~~~~~~~~l~nf~~~~ 192 (192)
T PF00117_consen 124 FKAYQYHSDAVNPD---DLLPEGFEVLASSSDGCPIQAIRHKDNP-IYGVQFHPEFSSSPGGPQLLKNFFLKA 192 (192)
T ss_dssp EEEEEEECEEEEEG---HHHHTTEEEEEEETTTTEEEEEEECTTS-EEEESSBTTSTTSTTHHHHHHHHHHHH
T ss_pred cccccccceeeecc---cccccccccccccccccccccccccccE-EEEEecCCcCCCCCCcchhhhheeEeC
Confidence 67889999999986 2237899999999887459999999999 679999999999998777777777664
|
The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B .... |
| >COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=223.33 Aligned_cols=190 Identities=26% Similarity=0.336 Sum_probs=128.2
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCC-C-CCCC
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPG-G-fG~r 373 (599)
++|+|+ ||+.. +..|+.+||+++|+++.+. ++| +.+..+|+||+|| | |++.
T Consensus 2 ~~i~II-Dyg~G--NL~Sv~~Aler~G~~~~vs-----------------~d~-------~~i~~AD~liLPGVGaf~~a 54 (204)
T COG0118 2 MMVAII-DYGSG--NLRSVKKALERLGAEVVVS-----------------RDP-------EEILKADKLILPGVGAFGAA 54 (204)
T ss_pred CEEEEE-EcCcc--hHHHHHHHHHHcCCeeEEe-----------------cCH-------HHHhhCCEEEecCCCCHHHH
Confidence 579999 69865 8899999999999877552 222 5688999999999 4 4441
Q ss_pred --c--hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCC-----CCCCeeeeCCC-CCcCcCCC
Q 007533 374 --G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-----TKNPCVIFMPE-GSKTHMGG 443 (599)
Q Consensus 374 --g--~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~-----~~~~vi~~mpe-~~~~~~Gg 443 (599)
. -.+++++++.+.+.++|+||||||||+|. +. |+|.+.. .+..|+.+-++ .++|||||
T Consensus 55 m~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf-e~-----------SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGW 122 (204)
T COG0118 55 MANLRERGLIEAIKEAVESGKPFLGICLGMQLLF-ER-----------SEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGW 122 (204)
T ss_pred HHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh-hc-----------ccccCCCCCcceecceEEEcCCCCCCCCcccc
Confidence 1 13678899998889999999999999994 32 2333221 24555555555 57899999
Q ss_pred ccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEccc
Q 007533 444 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFH 523 (599)
Q Consensus 444 tmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFH 523 (599)
+ .+.+.+++.++..+-.+ -..|+.|+|.+.+..-+ .+++.+..|...-++--++ .++|+|||
T Consensus 123 N------~l~~~~~~~l~~gi~~~---~~~YFVHSY~~~~~~~~-------~v~~~~~YG~~f~AaV~k~--N~~g~QFH 184 (204)
T COG0118 123 N------QVEFVRGHPLFKGIPDG---AYFYFVHSYYVPPGNPE-------TVVATTDYGEPFPAAVAKD--NVFGTQFH 184 (204)
T ss_pred c------eeeccCCChhhcCCCCC---CEEEEEEEEeecCCCCc-------eEEEeccCCCeeEEEEEeC--CEEEEecC
Confidence 6 23344443556655422 24689999998862111 1334344443222222222 36799999
Q ss_pred CCCcCCCCCchHHHHHHHHHH
Q 007533 524 PEYKSRPGKPSPLFLGLIAAA 544 (599)
Q Consensus 524 PE~ss~p~~p~pLF~~Fv~aa 544 (599)
||+|+.. +..++++|++.+
T Consensus 185 PEKSg~~--Gl~lL~NFl~~~ 203 (204)
T COG0118 185 PEKSGKA--GLKLLKNFLEWI 203 (204)
T ss_pred cccchHH--HHHHHHHHHhhc
Confidence 9999986 688999998753
|
|
| >cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-25 Score=211.58 Aligned_cols=176 Identities=25% Similarity=0.404 Sum_probs=127.8
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-hh
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg-~e 376 (599)
|+++ +|+. -.+++++|+.+|+.+.+. ..+. +++ .....++|||+++||++++. ..
T Consensus 1 i~i~-d~g~----~~~~~~~l~~~G~~~~~~----~~~~-~~~--------------~~~~~~~dgiil~GG~~~~~~~~ 56 (178)
T cd01744 1 VVVI-DFGV----KHNILRELLKRGCEVTVV----PYNT-DAE--------------EILKLDPDGIFLSNGPGDPALLD 56 (178)
T ss_pred CEEE-ecCc----HHHHHHHHHHCCCeEEEE----ECCC-CHH--------------HHhhcCCCEEEECCCCCChhHhH
Confidence 5677 5773 248899999999876431 1111 110 01245799999999998754 36
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEec
Q 007533 377 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 456 (599)
Q Consensus 377 g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~ 456 (599)
..+..++++.++++|+||||+|||+|+.++|++|...+. ++.|. .+++....
T Consensus 57 ~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~-----------------------~~~g~-----~~~v~~~~ 108 (178)
T cd01744 57 EAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKF-----------------------GHRGS-----NHPVKDLI 108 (178)
T ss_pred HHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCC-----------------------CCCCC-----ceeeEEcC
Confidence 677889999999999999999999999999999864321 11122 23443322
Q ss_pred CCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC-CCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 457 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 457 ~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~-dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
. .+ ....+++|+|+++++.+ +.+++++|++. ++. +|+++++++|+ +|+|||||+..++.+..+
T Consensus 109 ~---------~~-~~~v~~~H~~~v~~~~l----p~~~~v~a~s~~~~~-i~a~~~~~~~i-~GvQfHPE~~~~~~~~~~ 172 (178)
T cd01744 109 T---------GR-VYITSQNHGYAVDPDSL----PGGLEVTHVNLNDGT-VEGIRHKDLPV-FSVQFHPEASPGPHDTEY 172 (178)
T ss_pred C---------CC-cEEEEcCceEEEccccc----CCceEEEEEECCCCc-EEEEEECCCCe-EEEeeCCCCCCCCCCchH
Confidence 1 11 12246789999986554 66899999985 555 99999999995 699999999999888899
Q ss_pred HHHHHH
Q 007533 536 LFLGLI 541 (599)
Q Consensus 536 LF~~Fv 541 (599)
||.+|+
T Consensus 173 lf~~f~ 178 (178)
T cd01744 173 LFDEFL 178 (178)
T ss_pred hHhhhC
Confidence 999995
|
This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is |
| >COG2071 Predicted glutamine amidotransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=220.83 Aligned_cols=167 Identities=26% Similarity=0.452 Sum_probs=130.7
Q ss_pred HHHhccCCCEEEeCCC-------CCCCc-----------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccC
Q 007533 354 AWKLLKGADGILVPGG-------FGNRG-----------VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 415 (599)
Q Consensus 354 a~~~L~~~DGIlVPGG-------fG~rg-----------~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~d 415 (599)
+...+...|||++||| +|... ....+.+++.|.+.++|+||||.|||+|+++||++... +
T Consensus 54 ~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q--~ 131 (243)
T COG2071 54 ARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQ--D 131 (243)
T ss_pred HHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeeh--h
Confidence 3457889999999999 23211 13478899999999999999999999999999998742 2
Q ss_pred CCccccCCCCCCCeeeeCCCCCcCcC-CCccccCceeeEEecCCchhhhccCCc-eeEEeeeeeeeeeCchhhhhhccCC
Q 007533 416 ANSTEFDPNTKNPCVIFMPEGSKTHM-GGTMRLGSRRTYFQIKDCKSAKLYGNR-TFIDERHRHRYEVNPDMIARLENAG 493 (599)
Q Consensus 416 A~S~Ef~~~~~~~vi~~mpe~~~~~~-GgtmrLG~~~v~l~~~~s~l~~iyg~~-~~I~erHrHrYeVnp~~v~~le~~G 493 (599)
..... .. ..|. +....+..|++.+.++ |.+++++++. ..++..|+ +.+++| ..|
T Consensus 132 i~~~~--------------~~-~~H~~~~~~~~~~H~V~i~~~-s~La~i~g~~~~~VNS~Hh-------QaIk~L-a~~ 187 (243)
T COG2071 132 ISEQP--------------GH-IDHRQPNPVHIESHEVHIEPG-SKLAKILGESEFMVNSFHH-------QAIKKL-APG 187 (243)
T ss_pred hhccc--------------cc-ccccCCCCcccceeEEEecCC-ccHHHhcCccceeecchHH-------HHHHHh-CCC
Confidence 11110 00 1121 2233345899999998 8999999855 56777774 899999 899
Q ss_pred eEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCC-chHHHHHHHHHHhcc
Q 007533 494 LSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK-PSPLFLGLIAAACGQ 547 (599)
Q Consensus 494 l~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~-p~pLF~~Fv~aa~~~ 547 (599)
|+++|+++||. ||+||+++++|++|||||||+...... ...||+.|++++...
T Consensus 188 L~V~A~a~DG~-VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 188 LVVEARAPDGT-VEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred cEEEEECCCCc-EEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 99999999998 999999999999999999999988763 456999999998764
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-25 Score=247.44 Aligned_cols=293 Identities=18% Similarity=0.262 Sum_probs=220.7
Q ss_pred EEeeeeeeeecCCCccccCC-chhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhH
Q 007533 177 LIHVSLVPVLNVVGEQKTKP-TQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPL 255 (599)
Q Consensus 177 ~ihv~~vp~~~~~~e~ktkp-tq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl 255 (599)
.|-|---|.|+.-|-- +++ -+..-+.++|-.|++.+||+++...-.++|++.-||-.|+.++.|.+++|+||| .+..
T Consensus 49 QiLv~T~PlIGNyGVP-~~~~DE~l~~~fES~~I~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTR-aLtk 126 (1435)
T KOG0370|consen 49 QILVFTYPLIGNYGVP-PDARDEGLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTR-ALTK 126 (1435)
T ss_pred eEEEEecccccCCCCC-CCccccccccccccCceEEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHH-HHHH
Confidence 3444455777665655 444 345566778999999999999999999999999999999999999999999999 5778
Q ss_pred HHH--HHHHHHHHHcCCCCCCCchhhHHH-----HHHHhhhcC-------CCCceEEEEEeecCCCcchHHHHHHHHHHc
Q 007533 256 LLR--KAHEAIFKVLNLQGTTKEPLLKEW-----TSRAEICDG-------LHEPVRIAMVGKYTGLSDAYLSILKALLHA 321 (599)
Q Consensus 256 ~L~--g~~~~i~~~l~l~~~~~~~~l~~W-----~~l~~~~~~-------~~~~v~IaiVGkY~~l~DaY~SIi~AL~ha 321 (599)
.|| |.|-. +|-++. .+.+ | ++++..+.. ..+..+|+.+ +++ .+.++++.|...
T Consensus 127 ~lReqGSmLg---kl~~e~---~~~~--~vdpn~~nLvs~VS~Kep~~y~~Gk~~~I~ai-DcG----~K~N~IRcL~~R 193 (1435)
T KOG0370|consen 127 KLREQGSMLG---KLSIEK---SPVL--FVDPNKRNLVSQVSTKEPKVYGDGKSLRILAI-DCG----LKYNQIRCLVKR 193 (1435)
T ss_pred HHHhcCccee---EEEecC---CCCc--ccCCCcccchhhheeccceEEcCCcccEEEEc-ccC----chHHHHHHHHHh
Confidence 888 76632 222321 1110 2 223433331 3456789998 577 778999999999
Q ss_pred CCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHH
Q 007533 322 SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQ 400 (599)
Q Consensus 322 G~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQ 400 (599)
|+++.+ +.|-. .+ .-.++|||++++|||+|.. ...+..++...+.++|+||||+|||
T Consensus 194 Ga~vtV---vPw~~--~i-----------------~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQ 251 (1435)
T KOG0370|consen 194 GAEVTV---VPWDY--PI-----------------AKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQ 251 (1435)
T ss_pred CceEEE---ecCCc--cc-----------------cccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhH
Confidence 999876 23421 11 1128999999999999975 6677888888888899999999999
Q ss_pred HHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeee
Q 007533 401 VAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYE 480 (599)
Q Consensus 401 ll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYe 480 (599)
+++.+.|.++++|+.. ++|. ++||.-... ++..| +.++|.|.
T Consensus 252 llA~AaGakT~KmKyG-----------------------NRGh-----NiP~~~~~t---------Grc~I-TSQNHGYA 293 (1435)
T KOG0370|consen 252 LLALAAGAKTYKMKYG-----------------------NRGH-----NIPCTCRAT---------GRCFI-TSQNHGYA 293 (1435)
T ss_pred HHHHhhCCceEEeecc-----------------------ccCC-----CccceeccC---------ceEEE-EecCCcee
Confidence 9999999999887643 3443 566654332 45666 58999999
Q ss_pred eCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcchh
Q 007533 481 VNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLD 549 (599)
Q Consensus 481 Vnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~ 549 (599)
|+++.+ +.|++..-.+.+....|++.|...||| .+|||||.++.|.+...+|..|+....+...
T Consensus 294 VD~~tL----p~gWk~lFvN~NDgSNEGI~Hss~P~f-SvQFHPEat~GP~DTeyLFDiFi~lvkk~ks 357 (1435)
T KOG0370|consen 294 VDPATL----PAGWKPLFVNANDGSNEGIMHSSKPFF-SVQFHPEATPGPHDTEYLFDVFIELVKKSKS 357 (1435)
T ss_pred eccccc----cCCCchheeecccCCCceEecCCCCce-eeecCCcCCCCCcchHHHHHHHHHHHHHHhc
Confidence 999876 456665555533333899999999976 9999999999999999999999999876543
|
|
| >PLN02335 anthranilate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=215.46 Aligned_cols=197 Identities=17% Similarity=0.219 Sum_probs=133.3
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
...+|++|+.|. +|. ++.+.|+..|+++.+ +..+.++.+. -...++|||||+||||+
T Consensus 17 ~~~~ilviD~~d----sft~~i~~~L~~~g~~~~v------~~~~~~~~~~------------~~~~~~d~iVisgGPg~ 74 (222)
T PLN02335 17 QNGPIIVIDNYD----SFTYNLCQYMGELGCHFEV------YRNDELTVEE------------LKRKNPRGVLISPGPGT 74 (222)
T ss_pred ccCcEEEEECCC----CHHHHHHHHHHHCCCcEEE------EECCCCCHHH------------HHhcCCCEEEEcCCCCC
Confidence 446899996554 555 799999999988755 2222221100 11346899999999999
Q ss_pred CchhHH-HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 007533 373 RGVQGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451 (599)
Q Consensus 373 rg~eg~-i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~ 451 (599)
+...+. ...++ +...++|+||||||||+|+.++|++|...+.. ...|+ ..+
T Consensus 75 p~d~~~~~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~----------------------~~~G~-----~~~ 126 (222)
T PLN02335 75 PQDSGISLQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFG----------------------VMHGK-----SSP 126 (222)
T ss_pred hhhccchHHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCCCc----------------------cccCc-----eee
Confidence 865442 22232 33457999999999999999999988542110 01122 223
Q ss_pred eEEecC--CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCC
Q 007533 452 TYFQIK--DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 452 v~l~~~--~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~ 529 (599)
+.+... .+++..+. .. ....+.|+|.|+++.++ +.++.++|+++++. +++++++++|+++|+|||||....
T Consensus 127 v~~~~~~~~~Lf~~l~-~~--~~v~~~H~~~v~~~~lp---~~~~~v~a~~~~~~-v~ai~~~~~~~i~GvQfHPE~~~~ 199 (222)
T PLN02335 127 VHYDEKGEEGLFSGLP-NP--FTAGRYHSLVIEKDTFP---SDELEVTAWTEDGL-IMAARHRKYKHIQGVQFHPESIIT 199 (222)
T ss_pred eEECCCCCChhhhCCC-CC--CEEEechhheEecccCC---CCceEEEEEcCCCC-EEEEEecCCCCEEEEEeCCCCCCC
Confidence 333221 13455443 12 33578899998765432 33489999998887 999999999988899999999876
Q ss_pred CCCchHHHHHHHHHHhcch
Q 007533 530 PGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 530 p~~p~pLF~~Fv~aa~~~~ 548 (599)
+ ++..+|++|++++..+.
T Consensus 200 ~-~g~~i~~nF~~~~~~~~ 217 (222)
T PLN02335 200 T-EGKTIVRNFIKIIEKKE 217 (222)
T ss_pred h-hHHHHHHHHHHHHHhhc
Confidence 5 67899999999876544
|
|
| >PRK08007 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=209.14 Aligned_cols=182 Identities=20% Similarity=0.256 Sum_probs=128.2
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHH-hccCCCEEEeCCCCCCCch
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~-~L~~~DGIlVPGGfG~rg~ 375 (599)
|.+|+.|. +|. ++++.|+..|+++.+ +..++++. .+ ...++||||++||||++..
T Consensus 2 il~idn~D----sft~nl~~~l~~~g~~v~v------~~~~~~~~-------------~~~~~~~~d~iils~GPg~p~~ 58 (187)
T PRK08007 2 ILLIDNYD----SFTWNLYQYFCELGADVLV------KRNDALTL-------------ADIDALKPQKIVISPGPCTPDE 58 (187)
T ss_pred EEEEECCC----ccHHHHHHHHHHCCCcEEE------EeCCCCCH-------------HHHHhcCCCEEEEcCCCCChHH
Confidence 78898777 444 689999999887654 22222211 01 1237899999999999864
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 376 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 eg-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.+ .+..++. .+.++|+||||+|||+|+.++|++|..... ++.|+ ..++..
T Consensus 59 ~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~-----------------------~~~g~-----~~~v~~ 109 (187)
T PRK08007 59 AGISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAK-----------------------VMHGK-----TSPITH 109 (187)
T ss_pred CCccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCC-----------------------cccCC-----ceEEEE
Confidence 33 3455554 467899999999999999999999854321 12233 233443
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCch
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~ 534 (599)
... +++..+. .. +...+.|+|.|.+.. + +.+++++|+++++. +|+++++++| ++|+|||||..+.+ .+.
T Consensus 110 ~~~-~l~~~~~-~~--~~v~~~H~~~v~~~~---l-p~~~~v~a~~~~~~-i~a~~~~~~~-i~GvQfHPE~~~t~-~G~ 178 (187)
T PRK08007 110 NGE-GVFRGLA-NP--LTVTRYHSLVVEPDS---L-PACFEVTAWSETRE-IMGIRHRQWD-LEGVQFHPESILSE-QGH 178 (187)
T ss_pred CCC-CcccCCC-CC--cEEEEcchhEEccCC---C-CCCeEEEEEeCCCc-EEEEEeCCCC-EEEEEeCCcccCCc-chH
Confidence 333 4554442 22 335677888886443 3 67999999999987 9999999998 56999999997765 578
Q ss_pred HHHHHHHH
Q 007533 535 PLFLGLIA 542 (599)
Q Consensus 535 pLF~~Fv~ 542 (599)
.+|++|++
T Consensus 179 ~il~nFl~ 186 (187)
T PRK08007 179 QLLANFLH 186 (187)
T ss_pred HHHHHHhh
Confidence 99999985
|
|
| >PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=213.05 Aligned_cols=165 Identities=26% Similarity=0.359 Sum_probs=118.7
Q ss_pred HhccCCCEEEeCCCCCCC-----------ch------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCc
Q 007533 356 KLLKGADGILVPGGFGNR-----------GV------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418 (599)
Q Consensus 356 ~~L~~~DGIlVPGGfG~r-----------g~------eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S 418 (599)
+.++.+||||++||..+- .. +..++++++|.+.++|+||||+|||+|++++|+++.. +. +
T Consensus 57 ~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~--~~-~ 133 (254)
T PRK11366 57 QLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHR--KL-C 133 (254)
T ss_pred HHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEee--cc-c
Confidence 456789999999985321 11 2457889999999999999999999999999999853 11 0
Q ss_pred cccCCCCCCCeeeeCCCCCcCcC-CCc--c---ccCceeeEEecCCchhhhccCCce--eEEeeeeeeeeeCchhhhhhc
Q 007533 419 TEFDPNTKNPCVIFMPEGSKTHM-GGT--M---RLGSRRTYFQIKDCKSAKLYGNRT--FIDERHRHRYEVNPDMIARLE 490 (599)
Q Consensus 419 ~Ef~~~~~~~vi~~mpe~~~~~~-Ggt--m---rLG~~~v~l~~~~s~l~~iyg~~~--~I~erHrHrYeVnp~~v~~le 490 (599)
+. +.. . .|. .+. + ..+.+.+.+.++ +++..++++.. .++.+| . +.+..+
T Consensus 134 -~~-~~~----~--------~h~~~~~~~~~~~~~~~h~v~~~~~-s~l~~i~~~~~~~~Vns~H--~-----q~V~~l- 190 (254)
T PRK11366 134 -EQ-PEL----L--------EHREDPELPVEQQYAPSHEVQVEEG-GLLSALLPECSNFWVNSLH--G-----QGAKVV- 190 (254)
T ss_pred -cc-ccc----c--------ccccCCccccccccCCceEEEECCC-CcHHHhcCCCceEEeehHH--H-----HHHhhc-
Confidence 00 000 0 000 000 0 012467787777 78888874322 344444 2 667777
Q ss_pred cCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCc-hHHHHHHHHHHhcc
Q 007533 491 NAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP-SPLFLGLIAAACGQ 547 (599)
Q Consensus 491 ~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p-~pLF~~Fv~aa~~~ 547 (599)
+.|++++|+++||. +|++|++++||++|||||||+...+... ..||++|+++|...
T Consensus 191 ~~gl~v~A~s~dg~-ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~ 247 (254)
T PRK11366 191 SPRLRVEARSPDGL-VEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHH 247 (254)
T ss_pred ccceEEEEEcCCCc-EEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHH
Confidence 89999999999997 9999999999989999999998765433 57999999998753
|
|
| >PRK06895 putative anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=203.59 Aligned_cols=186 Identities=17% Similarity=0.216 Sum_probs=129.3
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
+||.+++.|.++ +| ++.++|+.+|+++.+. ...+.+ + +.++++||||++||+|.+..
T Consensus 2 ~~iliid~~dsf--~~-~i~~~l~~~g~~~~v~------~~~~~~-------~-------~~l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSF--TF-NLVDLIRKLGVPMQVV------NVEDLD-------L-------DEVENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCch--HH-HHHHHHHHcCCcEEEE------ECCccC-------h-------hHhccCCEEEECCCCCChHH
Confidence 689999877754 34 4999999999877552 222111 1 35678999999999996533
Q ss_pred -hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 376 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 -eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
......++. .+.++|+||||||||+|+.++|++|..++. ..|.++ .++..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~----------------------~~~g~~------~~v~~ 109 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNN----------------------VRHGQQ------RPLKV 109 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCC----------------------CccCce------EEEEE
Confidence 223455554 466899999999999999999999854211 123222 23443
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCch
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~ 534 (599)
.+++.++..+- . ....++.|+|.+.+..+ +.++..++.+.++. +++++++++| ++|+|||||..+.+ ...
T Consensus 110 ~~~~~l~~~~~-~--~~~v~~~Hs~~v~~~~l----p~~l~~~a~~~~~~-i~a~~~~~~p-i~GvQFHPE~~~~~-~g~ 179 (190)
T PRK06895 110 RSNSPLFDGLP-E--EFNIGLYHSWAVSEENF----PTPLEITAVCDENV-VMAMQHKTLP-IYGVQFHPESYISE-FGE 179 (190)
T ss_pred CCCChhhhcCC-C--ceEEEcchhheeccccc----CCCeEEEEECCCCc-EEEEEECCCC-EEEEEeCCCcCCCc-chH
Confidence 33323444432 2 23457889998875432 46788999887766 9999999999 56999999987776 467
Q ss_pred HHHHHHHHH
Q 007533 535 PLFLGLIAA 543 (599)
Q Consensus 535 pLF~~Fv~a 543 (599)
.++++|++.
T Consensus 180 ~il~nf~~~ 188 (190)
T PRK06895 180 QILRNWLAI 188 (190)
T ss_pred HHHHHHHhh
Confidence 899999864
|
|
| >COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=202.92 Aligned_cols=188 Identities=21% Similarity=0.295 Sum_probs=136.6
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
++|.+++.|.++. .++++.|+..|+++.+. .+. +++. .+-...++|+|++++|||.|..
T Consensus 2 ~~IL~IDNyDSFt---yNLv~yl~~lg~~v~V~-----rnd-~~~~------------~~~~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLIDNYDSFT---YNLVQYLRELGAEVTVV-----RND-DISL------------ELIEALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEEECccchH---HHHHHHHHHcCCceEEE-----ECC-ccCH------------HHHhhcCCCEEEEcCCCCChHH
Confidence 5799999887552 37888999999776552 111 2211 0112356899999999999987
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 376 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 eg-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.| ..++++.+ ..++|+||||||||.++.+||++|...+. +-.| ......
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~-----------------------~~HG------K~s~i~ 110 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKE-----------------------PMHG------KTSIIT 110 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCC-----------------------CcCC------eeeeee
Confidence 66 66778877 66899999999999999999999854321 1112 222222
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCch
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~ 534 (599)
..++.+++.+. +...+ .|+ |+..++++.+ +..++++|++.++..+++++++++|. +|+|||||.--++. ++
T Consensus 111 h~g~~iF~glp-~~f~v-~RY-HSLvv~~~~l----P~~l~vtA~~~d~~~IMai~h~~~pi-~gvQFHPESilT~~-G~ 181 (191)
T COG0512 111 HDGSGLFAGLP-NPFTV-TRY-HSLVVDPETL----PEELEVTAESEDGGVIMAVRHKKLPI-YGVQFHPESILTEY-GH 181 (191)
T ss_pred cCCcccccCCC-CCCEE-Eee-EEEEecCCCC----CCceEEEEEeCCCCEEEEEeeCCCCE-EEEecCCccccccc-hH
Confidence 23335666665 23333 677 8998888765 66899999998876699999999996 59999999887764 78
Q ss_pred HHHHHHHHH
Q 007533 535 PLFLGLIAA 543 (599)
Q Consensus 535 pLF~~Fv~a 543 (599)
.++++|++.
T Consensus 182 ~il~Nfl~~ 190 (191)
T COG0512 182 RILENFLRL 190 (191)
T ss_pred HHHHHHHhh
Confidence 999999975
|
|
| >TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=203.35 Aligned_cols=185 Identities=21% Similarity=0.244 Sum_probs=130.6
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc--CCCEEEeCCCCCCCch
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRGV 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIlVPGGfG~rg~ 375 (599)
|++| ||+.. .-.++.++|+..|+++.+ .+.+++ . +.+. ++||||+|||+++...
T Consensus 1 i~ii-D~g~~--~~~~l~~~l~~~g~~~~~----~~~~~~-~----------------~~~~~~~~~glii~Gg~~~~~~ 56 (188)
T TIGR00888 1 ILVL-DFGSQ--YTQLIARRLRELGVYSEL----VPNTTP-L----------------EEIREKNPKGIILSGGPSSVYA 56 (188)
T ss_pred CEEE-ECCch--HHHHHHHHHHHcCCEEEE----EeCCCC-H----------------HHHhhcCCCEEEECCCCCCcCc
Confidence 5678 57643 344788999999987643 222211 1 1222 3569999999988665
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 376 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 376 eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
......++.+.+.++|+||||+|||+|+.++|++|...+. +++|+ .++.+.
T Consensus 57 ~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~-----------------------~~~g~------~~v~~~ 107 (188)
T TIGR00888 57 ENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEK-----------------------REYGK------AELEIL 107 (188)
T ss_pred CCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCC-----------------------cccee------EEEEEe
Confidence 5567788888999999999999999999999988853211 23343 455555
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
+.+.++..+. ..+..++.|+|.+. .+ +.+++++|.++++. +++++.++.|+ +|+|||||++.++ ++..
T Consensus 108 ~~~~l~~~~~---~~~~~~~~H~~~v~-----~l-~~~~~vla~~~~~~-v~a~~~~~~~~-~g~QfHPE~~~~~-~g~~ 175 (188)
T TIGR00888 108 DEDDLFRGLP---DESTVWMSHGDKVK-----EL-PEGFKVLATSDNCP-VAAMAHEEKPI-YGVQFHPEVTHTE-YGNE 175 (188)
T ss_pred cCCHhhcCCC---CCcEEEeEccceee-----cC-CCCCEEEEECCCCC-eEEEEECCCCE-EEEeeCCccCCCh-hhHH
Confidence 5423333331 23445677888763 34 67899999988765 99999999885 6999999998775 4789
Q ss_pred HHHHHHHHHhcc
Q 007533 536 LFLGLIAAACGQ 547 (599)
Q Consensus 536 LF~~Fv~aa~~~ 547 (599)
+|++|+.+++++
T Consensus 176 i~~~f~~~~~~~ 187 (188)
T TIGR00888 176 LLENFVYDVCGC 187 (188)
T ss_pred HHHHHHHHhhCC
Confidence 999999965543
|
separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit. |
| >PRK05670 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=203.38 Aligned_cols=185 Identities=21% Similarity=0.270 Sum_probs=125.8
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.|++.| |+|. ++.+.|+..|+++.+. +....+.+ ..+.+ ++||||++||+|++...
T Consensus 2 iliid~~----d~f~~~i~~~l~~~g~~~~v~------~~~~~~~~-----------~~~~~-~~dglIlsgGpg~~~d~ 59 (189)
T PRK05670 2 ILLIDNY----DSFTYNLVQYLGELGAEVVVY------RNDEITLE-----------EIEAL-NPDAIVLSPGPGTPAEA 59 (189)
T ss_pred EEEEECC----CchHHHHHHHHHHCCCcEEEE------ECCCCCHH-----------HHHhC-CCCEEEEcCCCCChHHc
Confidence 7888644 4666 7999999999887542 22111100 01223 48999999999997432
Q ss_pred -HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 377 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 377 -g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
.....++. ...++|+||||+|||+|+.++|++|...+. .+.|+ .+++. .
T Consensus 60 ~~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~-----------------------~~~g~-----~~~v~-~ 109 (189)
T PRK05670 60 GISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKE-----------------------IMHGK-----TSPIE-H 109 (189)
T ss_pred chHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCC-----------------------cccCc-----eeEEE-e
Confidence 23345554 456899999999999999999998854221 11232 12333 2
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
.+++++..+. . ....+|.|+|.|.+. .+ +.+++++|+++++. +|+++++++| ++|+|||||+...+ ++.+
T Consensus 110 ~~~~l~~~~~-~--~~~v~~~H~~~v~~~---~l-p~~~~~la~s~~~~-i~a~~~~~~~-~~gvQfHPE~~~~~-~g~~ 179 (189)
T PRK05670 110 DGSGIFAGLP-N--PFTVTRYHSLVVDRE---SL-PDCLEVTAWTDDGE-IMGVRHKELP-IYGVQFHPESILTE-HGHK 179 (189)
T ss_pred CCCchhccCC-C--CcEEEcchhheeccc---cC-CCceEEEEEeCCCc-EEEEEECCCC-EEEEeeCCCcCCCc-chHH
Confidence 2223333332 1 234578899988642 23 67899999997775 9999999999 56999999997654 6889
Q ss_pred HHHHHHHHH
Q 007533 536 LFLGLIAAA 544 (599)
Q Consensus 536 LF~~Fv~aa 544 (599)
+|++|++.+
T Consensus 180 i~~~F~~~~ 188 (189)
T PRK05670 180 LLENFLELA 188 (189)
T ss_pred HHHHHHHhh
Confidence 999999875
|
|
| >CHL00101 trpG anthranilate synthase component 2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=203.58 Aligned_cols=186 Identities=19% Similarity=0.261 Sum_probs=127.5
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHH-hccCCCEEEeCCCCCCCch
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~-~L~~~DGIlVPGGfG~rg~ 375 (599)
|.+++.|. +|. ++.+.|+..|+++.+ ++..+.+. .+ ...++||||++||+|++..
T Consensus 2 iliid~~d----sft~~l~~~l~~~g~~~~v------~~~~~~~~-------------~~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 2 ILIIDNYD----SFTYNLVQSLGELNSDVLV------CRNDEIDL-------------SKIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred EEEEECCC----chHHHHHHHHHhcCCCEEE------EECCCCCH-------------HHHhhCCCCEEEECCCCCChHH
Confidence 77886554 555 689999999987754 23222110 01 2357999999999998754
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 376 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 376 eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
.+....+..+.+.++|+||||+|||+|+.++|++|...+. ...|++ ..+. .
T Consensus 59 ~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~-----------------------~~~g~~-----~~~~-~ 109 (190)
T CHL00101 59 SGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPK-----------------------PMHGKT-----SKIY-H 109 (190)
T ss_pred CcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECCC-----------------------cccCce-----eeEe-e
Confidence 4433334345678999999999999999999999854321 112332 1121 2
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
..+.++..+. ......+.|+|.|++.. + +.++.++|+++++. +|+++++++||++|+|||||...++ ....
T Consensus 110 ~~~~l~~~~~---~~~~v~~~H~~~v~~~~---l-p~~~~vla~s~~~~-v~a~~~~~~~~i~gvQfHPE~~~~~-~g~~ 180 (190)
T CHL00101 110 NHDDLFQGLP---NPFTATRYHSLIIDPLN---L-PSPLEITAWTEDGL-IMACRHKKYKMLRGIQFHPESLLTT-HGQQ 180 (190)
T ss_pred CCcHhhccCC---CceEEEcchhheeeccc---C-CCceEEEEEcCCCc-EEEEEeCCCCCEEEEEeCCccCCCh-hHHH
Confidence 2213343332 12345788999886532 3 67899999998887 9999999999788999999987554 5788
Q ss_pred HHHHHHHHH
Q 007533 536 LFLGLIAAA 544 (599)
Q Consensus 536 LF~~Fv~aa 544 (599)
+|++|++.+
T Consensus 181 l~~nf~~~~ 189 (190)
T CHL00101 181 ILRNFLSLS 189 (190)
T ss_pred HHHHHHhhh
Confidence 999998753
|
|
| >TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=202.19 Aligned_cols=184 Identities=18% Similarity=0.278 Sum_probs=129.4
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.+|+.|. +|. ++++.|+..|+++.+. ..+..+++ +. +. .++|||||+||||++...
T Consensus 2 il~id~~d----sft~~~~~~l~~~g~~v~v~----~~~~~~~~------------~~-~~-~~~d~iilsgGpg~p~~~ 59 (188)
T TIGR00566 2 VLMIDNYD----SFTYNLVQYFCELGAEVVVK----RNDSLTLQ------------EI-EA-LLPLLIVISPGPCTPNEA 59 (188)
T ss_pred EEEEECCc----CHHHHHHHHHHHcCCceEEE----ECCCCCHH------------HH-Hh-cCCCEEEEcCCCCChhhc
Confidence 77887665 665 7899999998876441 11111111 01 11 268999999999997542
Q ss_pred H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 377 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 377 g-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
+ ....++++ ..++|+||||+|||+|+.++|++|...+. ...|+ ..++...
T Consensus 60 ~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~-----------------------~~~g~-----~~~v~~~ 110 (188)
T TIGR00566 60 GISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANT-----------------------VMHGK-----TSEIEHN 110 (188)
T ss_pred chhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCC-----------------------ccccc-----eEEEEEC
Confidence 2 35777777 57899999999999999999999854211 11232 2345544
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
+. +++..+++ + ....+.|+|.|+++.+ +.+++++|++.++..+++++++++|+ +|+|||||...++ .+..
T Consensus 111 ~~-~~~~~l~~-~--~~v~~~H~~~v~~~~l----~~~~~v~a~s~~~~~v~a~~~~~~~i-~gvQfHPE~~~t~-~G~~ 180 (188)
T TIGR00566 111 GA-GIFRGLFN-P--LTATRYHSLVVEPETL----PTCFPVTAWEEENIEIMAIRHRDLPL-EGVQFHPESILSE-QGHQ 180 (188)
T ss_pred CC-ccccCCCC-C--cEEEEcccceEecccC----CCceEEEEEcCCCCEEEEEEeCCCCE-EEEEeCCCccCCc-ccHH
Confidence 43 55666653 2 3456789998875443 67899999988753599999999995 6999999997764 6889
Q ss_pred HHHHHHH
Q 007533 536 LFLGLIA 542 (599)
Q Consensus 536 LF~~Fv~ 542 (599)
+|++|+.
T Consensus 181 il~nfl~ 187 (188)
T TIGR00566 181 LLANFLH 187 (188)
T ss_pred HHHHHHh
Confidence 9999985
|
This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase. |
| >PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-23 Score=201.42 Aligned_cols=188 Identities=19% Similarity=0.245 Sum_probs=128.2
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.+|+.|. +|. ++++.|+..|+++.+ +..++...+ ++ ...++||||++||||++...
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~v~v------~~~~~~~~~----------~~--~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 2 ILMIDNYD----SFTFNLVQFLGELGQELVV------KRNDEVTIS----------DI--ENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred EEEEeCCC----ccHHHHHHHHHHCCCcEEE------EeCCCCCHH----------HH--hhCCCCEEEECCCCCChHhC
Confidence 77887665 555 689999999887654 222211100 00 12478999999999997543
Q ss_pred H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 377 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 377 g-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
+ ....++. .+.++|+||||||||+|+.++|++|...+. ...|++ .++..
T Consensus 60 ~~~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~-----------------------~~~G~~-----~~i~~- 109 (195)
T PRK07649 60 GISMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAER-----------------------LMHGKT-----SLMHH- 109 (195)
T ss_pred CCchHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCC-----------------------cccCCe-----EEEEE-
Confidence 3 3344443 356899999999999999999999854321 112332 22222
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
.+.+++..+.. . ....++|++.+.++. + +.|++++|.++++. +++++++++| ++|+|||||...++ .+..
T Consensus 110 ~~~~lf~~~~~-~--~~v~~~H~~~v~~~~---l-p~~~~~~a~s~~~~-v~a~~~~~~~-i~gvQFHPE~~~t~-~g~~ 179 (195)
T PRK07649 110 DGKTIFSDIPN-P--FTATRYHSLIVKKET---L-PDCLEVTSWTEEGE-IMAIRHKTLP-IEGVQFHPESIMTS-HGKE 179 (195)
T ss_pred CCChhhcCCCC-C--CEEEEechheEeccc---C-CCCeEEEEEcCCCc-EEEEEECCCC-EEEEEECCCCCCCc-cHHH
Confidence 22245555542 2 335677888874332 3 67899999998887 9999999999 46999999987665 5789
Q ss_pred HHHHHHHHHhcc
Q 007533 536 LFLGLIAAACGQ 547 (599)
Q Consensus 536 LF~~Fv~aa~~~ 547 (599)
+|++|++.....
T Consensus 180 il~nfl~~~~~~ 191 (195)
T PRK07649 180 LLQNFIRKYSPS 191 (195)
T ss_pred HHHHHHHHhHhh
Confidence 999999877543
|
|
| >cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=196.02 Aligned_cols=183 Identities=21% Similarity=0.257 Sum_probs=124.5
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.+++.|+ .|. .+.++|+.+|+++.+. .| +.-.+ ....+.++||||++||+|.+...
T Consensus 1 il~~~~~~----~~~~~~~~~l~~~G~~~~~~---~~---~~~~~------------~~~~~~~~dgvil~gG~~~~~~~ 58 (184)
T cd01743 1 ILLIDNYD----SFTYNLVQYLRELGAEVVVV---RN---DEITL------------EELELLNPDAIVISPGPGHPEDA 58 (184)
T ss_pred CEEEeCCC----ccHHHHHHHHHHcCCceEEE---eC---CCCCH------------HHHhhcCCCEEEECCCCCCcccc
Confidence 45665444 555 5788899999877542 22 11100 00235789999999999987554
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEec
Q 007533 377 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 456 (599)
Q Consensus 377 g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~ 456 (599)
.....+..+.++++|+||||+|||+|+.++|++|...+. ...|+ .+++.+.+
T Consensus 59 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~-----------------------~~~g~-----~~~v~~~~ 110 (184)
T cd01743 59 GISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPE-----------------------PMHGK-----TSEIHHDG 110 (184)
T ss_pred hhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCC-----------------------CCcCc-----eeEEEECC
Confidence 445555555577899999999999999999998853210 12232 23444443
Q ss_pred CCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHH
Q 007533 457 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 536 (599)
Q Consensus 457 ~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pL 536 (599)
. +++..+. ......+.|+|.|++.-. ..++.++|.++++. +++++++++|+ +|+|||||+.+.+. ...|
T Consensus 111 ~-~~~~~~~---~~~~~~~~H~~~v~~~~~----~~~~~~la~~~~~~-v~a~~~~~~~i-~gvQfHPE~~~~~~-g~~l 179 (184)
T cd01743 111 S-GLFKGLP---QPFTVGRYHSLVVDPDPL----PDLLEVTASTEDGV-IMALRHRDLPI-YGVQFHPESILTEY-GLRL 179 (184)
T ss_pred C-ccccCCC---CCcEEEeCcEEEEecCCC----CceEEEEEeCCCCe-EEEEEeCCCCE-EEEeeCCCcCCCcc-hHHH
Confidence 3 4444442 223467889998864321 22488999988885 99999999995 69999999988874 8899
Q ss_pred HHHHH
Q 007533 537 FLGLI 541 (599)
Q Consensus 537 F~~Fv 541 (599)
|++|+
T Consensus 180 ~~~f~ 184 (184)
T cd01743 180 LENFL 184 (184)
T ss_pred HHhhC
Confidence 99994
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese |
| >PRK06774 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=197.80 Aligned_cols=183 Identities=17% Similarity=0.262 Sum_probs=120.4
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh-ccCCCEEEeCCCCCCCch
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGV 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlVPGGfG~rg~ 375 (599)
|.+|+.|. +|. +++..|+..|+++.+ +...+.+. .+. ..++||||++||||++..
T Consensus 2 il~id~~d----sf~~nl~~~l~~~~~~~~v------~~~~~~~~-------------~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 2 LLLIDNYD----SFTYNLYQYFCELGTEVMV------KRNDELQL-------------TDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred EEEEECCC----chHHHHHHHHHHCCCcEEE------EeCCCCCH-------------HHHHhcCCCeEEEcCCCCChHh
Confidence 77887665 665 688999988887754 22222211 011 237899999999999754
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 376 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 eg-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.+ ....++. .+.++|+||||+|||+|+.++|++|...+. ...|++ ....
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~-----------------------~~~G~~------~~~~ 108 (191)
T PRK06774 59 AGISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRARQ-----------------------VMHGKT------SAIC 108 (191)
T ss_pred CCCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCCc-----------------------ceecce------EEEE
Confidence 33 3344443 467899999999999999999998854210 112332 2222
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCC---eEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ---RMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~---~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
...++++..+. .. ....+.|+|.+++.. + +.++.++|+++++. .++++++++.|+ +|+|||||..+.+
T Consensus 109 ~~~~~lf~~l~-~~--~~v~~~Hs~~v~~~~---l-p~~~~vlA~s~~d~~~~~i~~~~~~~~~i-~GvQfHPE~~~~~- 179 (191)
T PRK06774 109 HSGQGVFRGLN-QP--LTVTRYHSLVIAADS---L-PGCFELTAWSERGGEMDEIMGIRHRTLPL-EGVQFHPESILSE- 179 (191)
T ss_pred ecCchhhcCCC-CC--cEEEEeCcceeeccC---C-CCCeEEEEEeCCCCCcceEEEEEeCCCCE-EEEEECCCcCCCc-
Confidence 22223444442 22 345677888876432 3 67899999987542 256677887775 6999999997766
Q ss_pred CchHHHHHHHH
Q 007533 532 KPSPLFLGLIA 542 (599)
Q Consensus 532 ~p~pLF~~Fv~ 542 (599)
.+..+|++|++
T Consensus 180 ~G~~i~~nf~~ 190 (191)
T PRK06774 180 QGHQLLDNFLK 190 (191)
T ss_pred cHHHHHHHHhh
Confidence 57899999985
|
|
| >PRK07765 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=198.61 Aligned_cols=194 Identities=21% Similarity=0.274 Sum_probs=133.3
Q ss_pred eEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 296 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
++|.+++.|. +|. ++.+.|+..|+++.+. ..+...++ ...+.+.++|||||+||++++.
T Consensus 1 ~~ilv~d~~~----~~~~~~~~~l~~~G~~~~~~----~~~~~~~~------------~~~~~~~~~dgliisGGp~~~~ 60 (214)
T PRK07765 1 MRILVVDNYD----SFVFNLVQYLGQLGVEAEVW----RNDDPRLA------------DEAAVAAQFDGVLLSPGPGTPE 60 (214)
T ss_pred CeEEEEECCC----cHHHHHHHHHHHcCCcEEEE----ECCCcCHH------------HHHHhhcCCCEEEECCCCCChh
Confidence 4788887665 433 5778899999887541 11211111 0113367899999999999875
Q ss_pred h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 375 V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 375 ~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
. ...+..++++.++++|+||||+|||+|+.++|++|.+.+. ...|+ .+++.
T Consensus 61 ~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~-----------------------~~~g~-----~~~v~ 112 (214)
T PRK07765 61 RAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPE-----------------------LLHGK-----TSSVH 112 (214)
T ss_pred hcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCC-----------------------CccCc-----eeEEE
Confidence 3 3356789999999999999999999999999999854210 11132 23344
Q ss_pred EecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCc
Q 007533 454 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 533 (599)
Q Consensus 454 l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p 533 (599)
+... +++..+. .....++.|+|.+.++.+ +.|+.++|+++++. +|+++++++| ++|+|||||..... ++
T Consensus 113 ~~~~-~~~~~~~---~~~~v~~~H~~~v~~~~l----p~~~~vla~s~~~~-vqa~~~~~~~-i~gvQfHPE~~~t~-~g 181 (214)
T PRK07765 113 HTGV-GVLAGLP---DPFTATRYHSLTILPETL----PAELEVTARTDSGV-IMAVRHRELP-IHGVQFHPESVLTE-GG 181 (214)
T ss_pred ECCC-ccccCCC---CccEEEecchheEecccC----CCceEEEEEcCCCc-EEEEEeCCCC-EEEEeeCCCcccCc-ch
Confidence 4333 3444442 123457788988865433 67899999998887 9999999999 57999999986443 35
Q ss_pred hHHHHHHHHHHhcchh
Q 007533 534 SPLFLGLIAAACGQLD 549 (599)
Q Consensus 534 ~pLF~~Fv~aa~~~~~ 549 (599)
..++.+|+..| +...
T Consensus 182 ~~~l~~f~~~~-~~~~ 196 (214)
T PRK07765 182 HRMLANWLTVC-GWAP 196 (214)
T ss_pred HHHHHHHHHHh-cccc
Confidence 67888888654 4443
|
|
| >PRK00758 GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-22 Score=193.16 Aligned_cols=179 Identities=25% Similarity=0.336 Sum_probs=122.2
Q ss_pred EEEEeecCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCC-CEEEeCCCCCCCch
Q 007533 298 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGA-DGILVPGGFGNRGV 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY-~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~-DGIlVPGGfG~rg~ 375 (599)
|+|++ |.. .| .++.++|+.+|+++.+ ++.+ .. + +.+.++ ||||+|||+....
T Consensus 2 i~iid-~~~---~~~~~i~~~l~~~g~~~~~------~~~~-~~-------~-------~~l~~~~dgivi~Gg~~~~~- 55 (184)
T PRK00758 2 IVVVD-NGG---QYNHLIHRTLRYLGVDAKI------IPNT-TP-------V-------EEIKAFEDGLILSGGPDIER- 55 (184)
T ss_pred EEEEE-CCC---chHHHHHHHHHHcCCcEEE------EECC-CC-------H-------HHHhhcCCEEEECCCCChhh-
Confidence 78885 442 33 4788999999986533 2211 10 1 345666 9999999983221
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 376 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 376 eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
...+.+++++.++|+||||+|||+|+.++|++|...+. ++. |..++.+.
T Consensus 56 --~~~~~~~l~~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~-----------------------~~~------g~~~i~~~ 104 (184)
T PRK00758 56 --AGNCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGEY-----------------------GEY------ALVEVEIL 104 (184)
T ss_pred --ccccHHHHHhCCCCEEEEeHHHHHHHHhcCcEEecCCC-----------------------cee------eeEEEEEc
Confidence 11233455567899999999999999999988853210 112 33445554
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
+.+.++..+. . ....++.|+|.+ ..+ +.+++++|+++++. +|+++++++| ++|+|||||++.++ +...
T Consensus 105 ~~~~l~~~~~-~--~~~~~~~H~~~v-----~~l-~~~~~~la~~~~~~-v~a~~~~~~~-~~g~QfHPE~~~~~-~g~~ 172 (184)
T PRK00758 105 DEDDILKGLP-P--EIRVWASHADEV-----KEL-PDGFEILARSDICE-VEAMKHKEKP-IYGVQFHPEVAHTE-YGEE 172 (184)
T ss_pred CCChhhhCCC-C--CcEEEeehhhhh-----hhC-CCCCEEEEECCCCC-EEEEEECCCC-EEEEEcCCccCCCc-hHHH
Confidence 4434455432 2 234567787755 344 77899999999887 9999999999 56999999998774 5789
Q ss_pred HHHHHHHHHh
Q 007533 536 LFLGLIAAAC 545 (599)
Q Consensus 536 LF~~Fv~aa~ 545 (599)
||++|++.+.
T Consensus 173 l~~~f~~~~~ 182 (184)
T PRK00758 173 IFKNFLEICG 182 (184)
T ss_pred HHHHHHHHHc
Confidence 9999997654
|
|
| >cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-22 Score=194.03 Aligned_cols=181 Identities=20% Similarity=0.201 Sum_probs=122.7
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhH
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 377 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg 377 (599)
|+++ ||+.. .-.++.++|+.+|+.+.+ ...+.. .+ ...+.++||||+|||++....+.
T Consensus 1 i~~i-D~g~~--~~~~~~~~l~~~G~~~~~----~~~~~~-~~--------------~~~~~~~dgvIl~Gg~~~~~~~~ 58 (181)
T cd01742 1 ILIL-DFGSQ--YTHLIARRVRELGVYSEI----LPNTTP-LE--------------EIKLKNPKGIILSGGPSSVYEED 58 (181)
T ss_pred CEEE-ECCCc--hHHHHHHHHHhcCceEEE----ecCCCC-hh--------------hhcccCCCEEEECCCcccccccc
Confidence 5677 46532 124688999999976543 112211 00 02578999999999988654332
Q ss_pred HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecC
Q 007533 378 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 457 (599)
Q Consensus 378 ~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~ 457 (599)
.....++..+.++|+||||+|||+|+.++|++|...+. +++|+ .++.+.++
T Consensus 59 ~~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~-----------------------~~~G~------~~v~~~~~ 109 (181)
T cd01742 59 APRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDK-----------------------REYGK------AEIEIDDS 109 (181)
T ss_pred cchhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCCC-----------------------CcceE------EEEEecCC
Confidence 34456777788999999999999999999988753211 23343 33333333
Q ss_pred CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHH
Q 007533 458 DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 537 (599)
Q Consensus 458 ~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF 537 (599)
+.++..+. . .....+.|+|++ ..+ +.++.++|.++++. ++++++++.| ++|+|||||++..+ .+..+|
T Consensus 110 ~~l~~~~~-~--~~~~~~~H~~~v-----~~l-~~~~~~la~~~~~~-i~a~~~~~~~-~~g~QfHPE~~~~~-~g~~ll 177 (181)
T cd01742 110 SPLFEGLP-D--EQTVWMSHGDEV-----VKL-PEGFKVIASSDNCP-VAAIANEEKK-IYGVQFHPEVTHTE-KGKEIL 177 (181)
T ss_pred ChhhcCCC-C--ceEEEcchhhhh-----hhc-CCCcEEEEeCCCCC-EEEEEeCCCc-EEEEEcCCccccCc-ChHHHH
Confidence 23343332 1 234467788765 344 67899999998776 9999999888 56999999999875 678899
Q ss_pred HHHH
Q 007533 538 LGLI 541 (599)
Q Consensus 538 ~~Fv 541 (599)
++|+
T Consensus 178 ~~f~ 181 (181)
T cd01742 178 KNFL 181 (181)
T ss_pred HhhC
Confidence 9984
|
Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >PRK08857 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=192.30 Aligned_cols=185 Identities=18% Similarity=0.270 Sum_probs=123.7
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.+|+.|. +|. ++++.|+..|+.+.+ ++..+.+... -...++|+|+++||++++...
T Consensus 2 il~id~~d----sft~~~~~~l~~~g~~~~~------~~~~~~~~~~------------~~~~~~~~iilsgGp~~~~~~ 59 (193)
T PRK08857 2 LLMIDNYD----SFTYNLYQYFCELGAQVKV------VRNDEIDIDG------------IEALNPTHLVISPGPCTPNEA 59 (193)
T ss_pred EEEEECCC----CcHHHHHHHHHHCCCcEEE------EECCCCCHHH------------HhhCCCCEEEEeCCCCChHHC
Confidence 78897776 444 688999999987754 2222111000 012358999999999987543
Q ss_pred H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 377 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 377 g-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
+ ....++. .+.++|+||||+|||+|+.++|++|...+. ...|++ .++...
T Consensus 60 ~~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~-----------------------~~~G~~-----~~~~~~ 110 (193)
T PRK08857 60 GISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQ-----------------------VMHGKT-----SPIRHT 110 (193)
T ss_pred cchHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCC-----------------------ceeCce-----EEEEEC
Confidence 2 3455554 467899999999999999999998854221 112331 223222
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC--CCC--eEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE--TSQ--RMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~--dg~--~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
.. +++..+. .. ....+.|++.+.+. .+ +.+++++|+++ ++. .+++++++++|+ +|+|||||....+
T Consensus 111 ~~-~l~~~~~-~~--~~v~~~H~~~v~~~---~l-p~~~~v~a~s~~~~~~~~~i~~~~~~~~pi-~gvQfHPE~~~t~- 180 (193)
T PRK08857 111 GR-SVFKGLN-NP--LTVTRYHSLVVKND---TL-PECFELTAWTELEDGSMDEIMGFQHKTLPI-EAVQFHPESIKTE- 180 (193)
T ss_pred CC-cccccCC-Cc--cEEEEccEEEEEcC---CC-CCCeEEEEEecCcCCCcceEEEEEeCCCCE-EEEeeCCCcCCCc-
Confidence 22 3444442 22 34567788888533 23 67899999886 432 489999999996 5999999998665
Q ss_pred CchHHHHHHHHH
Q 007533 532 KPSPLFLGLIAA 543 (599)
Q Consensus 532 ~p~pLF~~Fv~a 543 (599)
.+..+|++|++.
T Consensus 181 ~g~~i~~nFl~~ 192 (193)
T PRK08857 181 QGHQLLANFLAR 192 (193)
T ss_pred chHHHHHHHHhh
Confidence 489999999863
|
|
| >PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-22 Score=196.69 Aligned_cols=195 Identities=22% Similarity=0.340 Sum_probs=133.9
Q ss_pred eEEEEEeecCCCcchHHHHHHHHH-HcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALL-HASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~-haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
+||||+ .|... ..-.++.+||+ .+|+++.. .|... ..+.++|+|++|||++...
T Consensus 1 ~~v~Vl-~~~G~-n~~~d~~~a~~~~~G~~~~~----v~~~~-------------------~~l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVI-VFPGS-NCDRDMARALRDLLGAEPEY----VWHKE-------------------TDLDGVDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEE-ecCCc-ChHHHHHHHHHhcCCCeEEE----EecCc-------------------CCCCCCCEEEECCCCchhh
Confidence 479999 56543 24577899999 88876532 23321 1367899999999975311
Q ss_pred ---------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCC
Q 007533 375 ---------VQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 443 (599)
Q Consensus 375 ---------~eg~i~aik~are~~iP~LGICLGmQll~ie--fgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Gg 443 (599)
....+..++.+.++++|++|||.|+|+|+.+ +.+.+. ...+.+|
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~---~n~~~~~---------------------- 110 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALT---RNASLKF---------------------- 110 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEE---EcCCCcE----------------------
Confidence 1445677888888999999999999999753 222111 0001111
Q ss_pred ccccCceeeEEecCCchhhhccC-Cce-eE-EeeeeeeeeeCchhhhhhccCCeE---EEEEeCCCCeEEEEEeCC-CCe
Q 007533 444 TMRLGSRRTYFQIKDCKSAKLYG-NRT-FI-DERHRHRYEVNPDMIARLENAGLS---FTGKDETSQRMEIVELPN-HPY 516 (599)
Q Consensus 444 tmrLG~~~v~l~~~~s~l~~iyg-~~~-~I-~erHrHrYeVnp~~v~~le~~Gl~---~sa~s~dg~~vE~iE~~~-hpf 516 (599)
.-....+.+.+..+.+.+.++ +.. .+ ...|+|||++|+++++.+++.|+. +++.+++|...++.++.+ ++|
T Consensus 111 --~~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~ 188 (219)
T PRK03619 111 --ICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGN 188 (219)
T ss_pred --EEEEEEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCC
Confidence 001122333332244444442 222 12 478999999999999999999988 444558998788889988 899
Q ss_pred EEEEcccCCCcCCC----CCchHHHHHHHH
Q 007533 517 FIGVQFHPEYKSRP----GKPSPLFLGLIA 542 (599)
Q Consensus 517 fvGvQFHPE~ss~p----~~p~pLF~~Fv~ 542 (599)
++|+|||||+.++| .+++++|.+|++
T Consensus 189 ~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 189 VLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred EEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 99999999999998 789999999986
|
|
| >TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=224.21 Aligned_cols=199 Identities=20% Similarity=0.292 Sum_probs=137.8
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHc-CCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~ha-G~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
..++|++|+.|. +|. +++..|+.. |..+. +.++..+..+.+ .+..+..+|||||+||||
T Consensus 4 ~~~~iL~ID~~D----Sft~nl~~~l~~~~g~~~~----v~vv~~d~~~~~-----------~~~~l~~~D~VVIspGPG 64 (742)
T TIGR01823 4 QRLHVLFIDSYD----SFTYNVVRLLEQQTDISVH----VTTVHSDTFQDQ-----------LLELLPLFDAIVVGPGPG 64 (742)
T ss_pred CCceEEEEeCCc----chHHHHHHHHHHhcCCCcE----EEEEeCCCCchh-----------hhhhhcCCCEEEECCCCC
Confidence 467999997665 665 788888876 33332 233444333210 123467899999999999
Q ss_pred CCchhHHHHHHHHHHHc----CCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcccc
Q 007533 372 NRGVQGKILAAKYAREH----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 447 (599)
Q Consensus 372 ~rg~eg~i~aik~are~----~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrL 447 (599)
++..+..+..++.+++. ++|+||||+|||+|+.++|++|...+. ++.|+
T Consensus 65 ~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~-----------------------~~hG~---- 117 (742)
T TIGR01823 65 NPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPT-----------------------PKHGQ---- 117 (742)
T ss_pred CccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCC-----------------------CCcCe----
Confidence 99776666677777765 499999999999999999998843221 12233
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
.+.+..... .++..++. ....+.|+|.++++..+.+ .+.+++.+.++..+|+++++++|+| |||||||..
T Consensus 118 -~~~v~~~~~-~lf~gl~~----~~v~~~Hs~~v~~~~~~~l---~~~~~a~~~~~~~i~ai~h~~~pi~-GVQFHPE~~ 187 (742)
T TIGR01823 118 -VYEMHTNDA-AIFCGLFS----VKSTRYHSLYANPEGIDTL---LPLCLTEDEEGIILMSAQTKKKPWF-GVQYHPESC 187 (742)
T ss_pred -EEEEEECCc-cccCCCCC----CceeEEEEEEccCCCCCcc---eEEEEEEcCCCCeEEEEEEcCCceE-EEEeCcccC
Confidence 123333222 34444442 2345679999876554322 2567777776666999999999975 999999998
Q ss_pred CCCCCchHHHHHHHHHHhcch
Q 007533 528 SRPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~aa~~~~ 548 (599)
.++....+||.+|++++....
T Consensus 188 ~s~~g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 188 CSELGSGKLVSNFLKLAFINN 208 (742)
T ss_pred CCCccHHHHHHHHHHHHHHhh
Confidence 888766999999999987654
|
This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. |
| >PLN02347 GMP synthetase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=215.35 Aligned_cols=191 Identities=20% Similarity=0.263 Sum_probs=134.1
Q ss_pred EEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc--cCCCEEEeCCCCCCC
Q 007533 297 RIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNR 373 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlVPGGfG~r 373 (599)
+|+++ ||++ .|. ++.++|+..|+.+.+. .|-. +. +.+ .++||||+|||+++.
T Consensus 12 ~IlII-D~G~---~~t~~I~r~lrelgv~~~v~---p~~~--~~----------------~~i~~~~~dgIILsGGP~sv 66 (536)
T PLN02347 12 VVLIL-DYGS---QYTHLITRRVRELGVYSLLL---SGTA--SL----------------DRIASLNPRVVILSGGPHSV 66 (536)
T ss_pred EEEEE-ECCC---cHHHHHHHHHHHCCCeEEEE---ECCC--CH----------------HHHhcCCCCEEEECCCCCcc
Confidence 69999 5874 454 8999999999876441 1211 11 222 278999999999765
Q ss_pred chhH----HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCc
Q 007533 374 GVQG----KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 449 (599)
Q Consensus 374 g~eg----~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~ 449 (599)
...+ ....++++.+.++|+||||+|||+|+.++|++|..... ..+| .
T Consensus 67 ~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~~-----------------------~e~G------~ 117 (536)
T PLN02347 67 HVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEK-----------------------QEYG------R 117 (536)
T ss_pred cccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecCC-----------------------cccc------e
Confidence 3211 22456667778999999999999999999998853210 1223 3
Q ss_pred eeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCC
Q 007533 450 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 450 ~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~ 529 (599)
.++.+..++.++..+.. ......++.|+|.+. .+ +.|+.++|+++++. ++++++++.|+ +|+|||||++.+
T Consensus 118 ~~v~i~~~~~Lf~~l~~-~~~~~v~~~Hsd~V~-----~l-P~g~~vlA~s~~~~-iaai~~~~~~i-~GvQFHPE~~~t 188 (536)
T PLN02347 118 MEIRVVCGSQLFGDLPS-GETQTVWMSHGDEAV-----KL-PEGFEVVAKSVQGA-VVAIENRERRI-YGLQYHPEVTHS 188 (536)
T ss_pred EEEEEcCCChhhhcCCC-CceEEEEEEEEEEee-----eC-CCCCEEEEEeCCCc-EEEEEECCCCE-EEEEccCCCCcc
Confidence 45555444344444432 212345778888763 23 77999999999887 89999999995 599999999887
Q ss_pred CCCchHHHHHHHHHHhcchhhh
Q 007533 530 PGKPSPLFLGLIAAACGQLDTL 551 (599)
Q Consensus 530 p~~p~pLF~~Fv~aa~~~~~~~ 551 (599)
+ .+..++++|+..++++...|
T Consensus 189 ~-~G~~iL~NFl~~ic~~~~~~ 209 (536)
T PLN02347 189 P-KGMETLRHFLFDVCGVTADW 209 (536)
T ss_pred c-hHHHHHHHHHHHHhCcCCCc
Confidence 6 47889999998887766544
|
|
| >PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-22 Score=198.27 Aligned_cols=170 Identities=29% Similarity=0.370 Sum_probs=108.6
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC--------CC---ch------
Q 007533 313 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--------NR---GV------ 375 (599)
Q Consensus 313 SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG--------~r---g~------ 375 (599)
+.+++++.+|+.... + +...+ . ..+.+.++.+||||+|||.- .. ..
T Consensus 28 ~Yv~~i~~aG~~pv~---i-p~~~~---~----------~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~ 90 (217)
T PF07722_consen 28 SYVKAIEAAGGRPVP---I-PYDAD---D----------EELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPE 90 (217)
T ss_dssp HHHHHHHHTT-EEEE---E--SS-----H----------HHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHH
T ss_pred HHHHHHHHcCCEEEE---E-ccCCC---H----------HHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHH
Confidence 679999999987532 2 22211 0 12446789999999999962 11 10
Q ss_pred --hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 376 --QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 376 --eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
.-.+.++++|+++++|+||||+|||+|++++|++.......... + ... ..+. -....|++.
T Consensus 91 rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~-~--------~~~-----~~~~---~~~~~h~v~ 153 (217)
T PF07722_consen 91 RDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPG-F--------PDH-----RQHP---QDFPSHPVR 153 (217)
T ss_dssp HHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS--E--------EEC-----EE-S----TS--EEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcC-c--------ccc-----cccc---cccccccce
Confidence 22567788899999999999999999999999987532111000 0 000 0000 023468888
Q ss_pred EecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCC-eEEEEcccCC
Q 007533 454 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHP-YFIGVQFHPE 525 (599)
Q Consensus 454 l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hp-ffvGvQFHPE 525 (599)
+.++ |.++++++ ...+.....|.+.|.+ + ..|++++|+++||. +|+||.++++ |++|||||||
T Consensus 154 i~~~-s~l~~~~~-~~~~~vns~Hhq~v~~-----l-~~~l~v~A~s~Dg~-iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 154 IVPG-SLLAKILG-SEEIEVNSFHHQAVKP-----L-GEGLRVTARSPDGV-IEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp EETT-STCCCTSH-HCTEEEEEEECEEECC-----H-HCCEEEEEEECTSS-EEEEEECCESS-EEEESS-CC
T ss_pred eccC-chHHHHhC-cCcceeecchhhhhhc-----c-CCCceEEEEecCCc-EEEEEEcCCCCCEEEEEeCCC
Confidence 8888 89999996 3333344556666665 4 78999999999997 9999999988 8899999999
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D. |
| >PRK05637 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-21 Score=188.15 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=122.6
Q ss_pred EEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh-ccCCCEEEeCCCCCCCc
Q 007533 297 RIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG 374 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlVPGGfG~rg 374 (599)
+|++++.|. ++. +++++|+..|+.+.+. +.+ ... .+. ..++|||||+||||++.
T Consensus 3 ~il~iD~~d----sf~~nl~~~l~~~g~~~~v~------~~~-~~~-------------~~l~~~~~~~iIlsgGPg~~~ 58 (208)
T PRK05637 3 HVVLIDNHD----SFVYNLVDAFAVAGYKCTVF------RNT-VPV-------------EEILAANPDLICLSPGPGHPR 58 (208)
T ss_pred EEEEEECCc----CHHHHHHHHHHHCCCcEEEE------eCC-CCH-------------HHHHhcCCCEEEEeCCCCCHH
Confidence 799996444 444 7999999999887552 211 100 011 24789999999999985
Q ss_pred hhH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcc-ccCceee
Q 007533 375 VQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM-RLGSRRT 452 (599)
Q Consensus 375 ~eg-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtm-rLG~~~v 452 (599)
..+ +...++.+. .++|+||||+|||+|+.++|++|.... .+... ...+.+ .+.|.+- -++..++
T Consensus 59 d~~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~----~~~G~---~~~i~~------~~~~~~~~l~~~~~~ 124 (208)
T PRK05637 59 DAGNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCG----PVHGT---TDNMIL------TDAGVQSPVFAGLAT 124 (208)
T ss_pred HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCC----cccce---EEEeEE------CCCCCCCcccCCCCc
Confidence 433 345555543 479999999999999999999985311 11000 000000 0111100 0111121
Q ss_pred EEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCC--CCeEEEEEeCCCCeEEEEcccCCCcCCC
Q 007533 453 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET--SQRMEIVELPNHPYFIGVQFHPEYKSRP 530 (599)
Q Consensus 453 ~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~d--g~~vE~iE~~~hpffvGvQFHPE~ss~p 530 (599)
...++ ...+.+.+..++.+ |++ .+..+ +.+++++|++++ +..+++++.++.| ++|+|||||...++
T Consensus 125 ~~~~~---~~~~~g~~~~V~~~--H~~-----~v~~l-p~~~~vlA~s~~~~~~v~~a~~~~~~~-~~GvQfHPE~~~T~ 192 (208)
T PRK05637 125 DVEPD---HPEIPGRKVPIARY--HSL-----GCVVA-PDGMESLGTCSSEIGPVIMAAETTDGK-AIGLQFHPESVLSP 192 (208)
T ss_pred ccccc---cccccCCceEEEEe--chh-----hhhcC-CCCeEEEEEecCCCCCEEEEEEECCCC-EEEEEeCCccCcCC
Confidence 11111 11222323344444 444 44455 789999999765 3457889999888 56999999998887
Q ss_pred CCchHHHHHHHHHHhc
Q 007533 531 GKPSPLFLGLIAAACG 546 (599)
Q Consensus 531 ~~p~pLF~~Fv~aa~~ 546 (599)
.+..+|.+|++....
T Consensus 193 -~G~~il~nfl~~~~~ 207 (208)
T PRK05637 193 -TGPIILSRCVEQLLA 207 (208)
T ss_pred -CHHHHHHHHHHHHhc
Confidence 588999999987653
|
|
| >PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-21 Score=186.71 Aligned_cols=187 Identities=18% Similarity=0.200 Sum_probs=117.9
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
|+|+|| ||+.. ++.|+.++|+..|+++.+ +... +.+.++|+||+|| .|....
T Consensus 1 m~i~ii-d~g~g--n~~s~~~~l~~~g~~~~~------v~~~------------------~~~~~~d~iIlPG-~G~~~~ 52 (196)
T PRK13170 1 MNVVII-DTGCA--NLSSVKFAIERLGYEPVV------SRDP------------------DVILAADKLFLPG-VGTAQA 52 (196)
T ss_pred CeEEEE-eCCCc--hHHHHHHHHHHCCCeEEE------ECCH------------------HHhCCCCEEEECC-CCchHH
Confidence 589999 68865 788999999999876543 3321 3567899999977 344321
Q ss_pred --hHH--HHHHHHHHHcCCCEEEEehhHHHHHHHhcc----ccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcccc
Q 007533 376 --QGK--ILAAKYAREHRIPYLGICLGMQVAVIEFAR----SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 447 (599)
Q Consensus 376 --eg~--i~aik~are~~iP~LGICLGmQll~iefgr----~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrL 447 (599)
... ...++.+++.++|+||||+|||+|+.+++. +.+|+-+.....+.. +....+++||+
T Consensus 53 ~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~----------~~~~~p~~G~~--- 119 (196)
T PRK13170 53 AMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTD----------FGLPLPHMGWN--- 119 (196)
T ss_pred HHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCC----------CCCCCCccccc---
Confidence 111 123555566689999999999999988743 222222221111110 11245788874
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
++.+.+++.++..+. . ....+|+|+|.+.++ ...++.++.+..+.++ +.+.+ ++|+|||||++
T Consensus 120 ---~v~~~~~~~l~~~l~-~--~~~v~~~Hs~~lp~~---------~~~la~s~~~~~~~~~-~~~~~-i~G~QFHPE~~ 182 (196)
T PRK13170 120 ---QVTPQAGHPLFQGIE-D--GSYFYFVHSYAMPVN---------EYTIAQCNYGEPFSAA-IQKDN-FFGVQFHPERS 182 (196)
T ss_pred ---eeEeCCCChhhhCCC-c--CCEEEEECeeecCCC---------CcEEEEecCCCeEEEE-EEcCC-EEEEECCCCCc
Confidence 444444434555543 2 234578899987542 2366777776643333 34445 67999999998
Q ss_pred CCCCCchHHHHHHHH
Q 007533 528 SRPGKPSPLFLGLIA 542 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~ 542 (599)
. ..+..++.+|++
T Consensus 183 ~--~~G~~~l~nfl~ 195 (196)
T PRK13170 183 G--AAGAQLLKNFLE 195 (196)
T ss_pred c--cccHHHHHHHhh
Confidence 5 358899999975
|
|
| >TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-21 Score=217.63 Aligned_cols=193 Identities=21% Similarity=0.210 Sum_probs=138.4
Q ss_pred CceEEEEEeecCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY-~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
...+|+||+ |+ |++ .++.++|+..|+++.+. .+...+++ -...++|||||+||+|+
T Consensus 515 ~~~~IlVID-~g---ds~~~~l~~~L~~~G~~v~vv---~~~~~~~~----------------~~~~~~DgLILsgGPGs 571 (717)
T TIGR01815 515 EGRRILLVD-HE---DSFVHTLANYLRQTGASVTTL---RHSHAEAA----------------FDERRPDLVVLSPGPGR 571 (717)
T ss_pred CCCEEEEEE-CC---ChhHHHHHHHHHHCCCeEEEE---ECCCChhh----------------hhhcCCCEEEEcCCCCC
Confidence 457999994 65 343 48999999999877441 11111110 12357999999999999
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceee
Q 007533 373 RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 452 (599)
Q Consensus 373 rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v 452 (599)
+...+....++++.+.++|+||||||||+|+.++|++|..++ .+++|+. .++
T Consensus 572 p~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~-----------------------~p~~G~~-----~~V 623 (717)
T TIGR01815 572 PADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLP-----------------------EPVHGKA-----SRI 623 (717)
T ss_pred chhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECC-----------------------CCeeCcc-----eEE
Confidence 876667788999999999999999999999999999885432 1345642 234
Q ss_pred EEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCC-
Q 007533 453 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG- 531 (599)
Q Consensus 453 ~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~- 531 (599)
.+...++++..+. .. ....+.|+|.+.... + +.++.++|.++++. +++++++++|+ +|+|||||...++.
T Consensus 624 ~~~~~~~Lf~~lp-~~--~~v~~~HS~~~~~~~---L-P~~~~vlA~s~d~~-v~Ai~~~~~~i-~GVQFHPEsi~T~sg 694 (717)
T TIGR01815 624 RVLGPDALFAGLP-ER--LTVGRYHSLFARRDR---L-PAELTVTAESADGL-IMAIEHRRLPL-AAVQFHPESIMTLDG 694 (717)
T ss_pred EECCCChhhhcCC-CC--CEEEEECCCCccccc---C-CCCeEEEEEeCCCc-EEEEEECCCCE-EEEEeCCeeCCccCc
Confidence 3333324455543 22 345778888765432 3 67899999998887 99999999995 59999999854432
Q ss_pred -CchHHHHHHHHHHhc
Q 007533 532 -KPSPLFLGLIAAACG 546 (599)
Q Consensus 532 -~p~pLF~~Fv~aa~~ 546 (599)
.+..+|++|+..++.
T Consensus 695 ~~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 695 GAGLAMIGNVVDRLAA 710 (717)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 368899999988864
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate. |
| >PRK13566 anthranilate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-21 Score=217.46 Aligned_cols=193 Identities=18% Similarity=0.204 Sum_probs=138.4
Q ss_pred CCceEEEEEeecCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 007533 293 HEPVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 293 ~~~v~IaiVGkY~~l~DaY-~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
...++|++|+ |. |++ .++.+.|+..|+++.+. .+-.+.++ -...++|||||+||+|
T Consensus 524 ~~g~~IlvID-~~---dsf~~~l~~~Lr~~G~~v~vv---~~~~~~~~----------------~~~~~~DgVVLsgGpg 580 (720)
T PRK13566 524 GEGKRVLLVD-HE---DSFVHTLANYFRQTGAEVTTV---RYGFAEEM----------------LDRVNPDLVVLSPGPG 580 (720)
T ss_pred CCCCEEEEEE-CC---CchHHHHHHHHHHCCCEEEEE---ECCCChhH----------------hhhcCCCEEEECCCCC
Confidence 3567999994 65 344 47899999999887541 11111110 1235799999999999
Q ss_pred CCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 007533 372 NRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451 (599)
Q Consensus 372 ~rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~ 451 (599)
.+...+....++++.++++|+||||+|||+|+.++|++|..++. ++.|+ .++
T Consensus 581 sp~d~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~-----------------------~~~G~-----~~~ 632 (720)
T PRK13566 581 RPSDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAY-----------------------PMHGK-----PSR 632 (720)
T ss_pred ChhhCCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCC-----------------------CccCC-----ceE
Confidence 98766778999999999999999999999999999998854321 22232 345
Q ss_pred eEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCC--
Q 007533 452 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR-- 529 (599)
Q Consensus 452 v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~-- 529 (599)
+.+...+.++..+. . .+...+.|+|.+.... + +.+++++|.++++. ++++++++.|+ +|+|||||+..+
T Consensus 633 V~v~~~~~Lf~~lp-~--~~~v~~~Hs~~v~~~~---L-p~~~~vlA~s~dg~-V~ai~~~~~pi-~GVQFHPE~i~t~~ 703 (720)
T PRK13566 633 IRVRGPGRLFSGLP-E--EFTVGRYHSLFADPET---L-PDELLVTAETEDGV-IMAIEHKTLPV-AAVQFHPESIMTLG 703 (720)
T ss_pred EEECCCCchhhcCC-C--CCEEEEecceeEeecc---C-CCceEEEEEeCCCc-EEEEEECCCCE-EEEeccCeeCCcCC
Confidence 55555433444442 2 2345677887665332 3 67899999998886 99999999995 699999998644
Q ss_pred CCCchHHHHHHHHHHh
Q 007533 530 PGKPSPLFLGLIAAAC 545 (599)
Q Consensus 530 p~~p~pLF~~Fv~aa~ 545 (599)
...+..+|++|++.+.
T Consensus 704 ~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 704 GDVGLRIIENVVRLLA 719 (720)
T ss_pred chhHHHHHHHHHHHhh
Confidence 2347899999998874
|
|
| >cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=184.81 Aligned_cols=149 Identities=25% Similarity=0.366 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc---------------h-
Q 007533 312 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---------------V- 375 (599)
Q Consensus 312 ~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg---------------~- 375 (599)
.+++++|+.+|+.+.+ +.+.. +. ..+...+..+||||+|||++... .
T Consensus 22 ~~~~~~l~~~G~~~~i---v~~~~--~~------------~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T cd01745 22 QYYVDAVRKAGGLPVL---LPPVD--DE------------EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPE 84 (189)
T ss_pred HHHHHHHHHCCCEEEE---eCCCC--Ch------------HHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChh
Confidence 3789999999986533 11211 11 01224568899999999975311 0
Q ss_pred --hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 376 --QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 376 --eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
.....+++++.+.++|+||||+|||+|+.++|++|...
T Consensus 85 r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~---------------------------------------- 124 (189)
T cd01745 85 RDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQD---------------------------------------- 124 (189)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcC----------------------------------------
Confidence 13477889998999999999999999999988776310
Q ss_pred EecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCC-CCC
Q 007533 454 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR-PGK 532 (599)
Q Consensus 454 l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~-p~~ 532 (599)
. .++ +.|+++ +..+ +.+++++|.++++. +|++++++|++++|+|||||+... +.+
T Consensus 125 -----~----------~v~--~~H~~~-----v~~~-~~~~~vla~~~d~~-vea~~~~~~~~~~gvQfHPE~~~~~~~~ 180 (189)
T cd01745 125 -----I----------RVN--SLHHQA-----IKRL-ADGLRVEARAPDGV-IEAIESPDRPFVLGVQWHPEWLADTDPD 180 (189)
T ss_pred -----C----------cee--chHHHH-----Hhhc-CCCCEEEEECCCCc-EEEEEeCCCCeEEEEecCCCcCcccCch
Confidence 0 122 335544 4445 78999999988886 999999997778899999999998 778
Q ss_pred chHHHHHHH
Q 007533 533 PSPLFLGLI 541 (599)
Q Consensus 533 p~pLF~~Fv 541 (599)
...+|.+|+
T Consensus 181 ~~~if~~f~ 189 (189)
T cd01745 181 SLKLFEAFV 189 (189)
T ss_pred HhHHHHHhC
Confidence 899999985
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-20 Score=184.12 Aligned_cols=196 Identities=21% Similarity=0.227 Sum_probs=120.3
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
+||+|| +|+.. +..|+.++|+..|+++ ++.|+.+. +.+.++|||||||+.....
T Consensus 2 ~~~~ii-d~g~g--n~~s~~~al~~~g~~~----~v~~~~~~------------------~~l~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 2 MTVAII-DYGSG--NLRSAAKALERAGAGA----DVVVTADP------------------DAVAAADRVVLPGVGAFADC 56 (209)
T ss_pred CeEEEE-ECCCC--hHHHHHHHHHHcCCCc----cEEEECCH------------------HHhcCCCEEEECCCCcHHHH
Confidence 689999 69854 6789999999999965 34455431 4578999999999632211
Q ss_pred ---h--hHHHHH-HHHHHHcCCCEEEEehhHHHHHHH---hc-cccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 375 ---V--QGKILA-AKYAREHRIPYLGICLGMQVAVIE---FA-RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 375 ---~--eg~i~a-ik~are~~iP~LGICLGmQll~ie---fg-r~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
. .+.... ++.+.++++|+||||+|||+|+.+ ++ ...+|+-+....++++.. +....+++||+
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~--------~~~~~p~~G~~ 128 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDG--------PALKVPHMGWN 128 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCC--------CCCccCccChH
Confidence 1 122333 444556899999999999999865 11 011111111111110000 01134677874
Q ss_pred cccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccC
Q 007533 445 MRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHP 524 (599)
Q Consensus 445 mrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHP 524 (599)
++...+++.++..+. .. ...++.|+|.+.+. + +..+++.+.++..++++... .+ ++|+||||
T Consensus 129 ------~v~~~~~~~lf~~~~-~~--~~v~~~Hs~~v~~~------~-~~~~la~s~~~~~~~a~~~~-~~-i~GvQFHP 190 (209)
T PRK13146 129 ------TVDQTRDHPLFAGIP-DG--ARFYFVHSYYAQPA------N-PADVVAWTDYGGPFTAAVAR-DN-LFATQFHP 190 (209)
T ss_pred ------HeeeCCCChhccCCC-CC--CEEEEEeEEEEEcC------C-CCcEEEEEcCCCEEEEEEec-CC-EEEEEcCC
Confidence 344444434455443 22 34578899988532 1 34677887776556666543 45 67999999
Q ss_pred CCcCCCCCchHHHHHHHHHH
Q 007533 525 EYKSRPGKPSPLFLGLIAAA 544 (599)
Q Consensus 525 E~ss~p~~p~pLF~~Fv~aa 544 (599)
|+++. ....++++|++.+
T Consensus 191 E~s~~--~G~~ll~nfl~~~ 208 (209)
T PRK13146 191 EKSQD--AGLALLRNFLAWL 208 (209)
T ss_pred cccHH--HHHHHHHHHHhhc
Confidence 98743 5788999998763
|
|
| >CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=184.57 Aligned_cols=192 Identities=20% Similarity=0.207 Sum_probs=119.0
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
++|+|+ +|+.. +..|+.++|+.+|+++.+ ++.. +.+.++|+||+||+ |+..
T Consensus 2 ~~v~ii-d~~~G--N~~sl~~al~~~g~~v~v------v~~~------------------~~l~~~d~iIlPG~-g~~~~ 53 (210)
T CHL00188 2 MKIGII-DYSMG--NLHSVSRAIQQAGQQPCI------INSE------------------SELAQVHALVLPGV-GSFDL 53 (210)
T ss_pred cEEEEE-EcCCc--cHHHHHHHHHHcCCcEEE------EcCH------------------HHhhhCCEEEECCC-CchHH
Confidence 579999 69743 789999999999987644 2211 24567999999883 4422
Q ss_pred -h-----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc---cccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcc
Q 007533 375 -V-----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARS---VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM 445 (599)
Q Consensus 375 -~-----eg~i~aik~are~~iP~LGICLGmQll~iefgr~---Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtm 445 (599)
. .+....++.+.++++|+||||+|||+|+..+... .+++-+....++.. -+....+|+||+.
T Consensus 54 ~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~---------~~~~~~p~~Gw~~ 124 (210)
T CHL00188 54 AMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKH---------SPVKVIPHMGWNR 124 (210)
T ss_pred HHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCC---------CCCCccCccCCcc
Confidence 1 2456778888888999999999999997665432 12222222222210 0123578999953
Q ss_pred ccCceeeEEecC------CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEE
Q 007533 446 RLGSRRTYFQIK------DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIG 519 (599)
Q Consensus 446 rLG~~~v~l~~~------~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvG 519 (599)
- .+..+ ++++..+- . ....++.|+|.+.|+.. .-+..++...+...+++++.. + ++|
T Consensus 125 v------~~~~~~~~~~~~~lf~~l~-~--~~~v~~~HS~~v~p~~~-----~~l~~t~~~~~~~~v~a~~~~--~-i~G 187 (210)
T CHL00188 125 L------ECQNSECQNSEWVNWKAWP-L--NPWAYFVHSYGVMPKSQ-----ACATTTTFYGKQQMVAAIEYD--N-IFA 187 (210)
T ss_pred c------eecCCcccccCChhhcCCC-C--CCEEEEeCccEecCCCC-----ceEEEEEecCCcceEEEEecC--C-EEE
Confidence 2 22211 23455543 2 23456779998864321 112333333222348888853 4 679
Q ss_pred EcccCCCcCCCCCchHHHHHHHHH
Q 007533 520 VQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 520 vQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
+|||||+++. .+..++++|+..
T Consensus 188 vQFHPE~s~~--~G~~il~nfl~~ 209 (210)
T CHL00188 188 MQFHPEKSGE--FGLWLLREFMKK 209 (210)
T ss_pred EecCCccccH--hHHHHHHHHHhh
Confidence 9999999843 478899999864
|
|
| >PRK00074 guaA GMP synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=207.21 Aligned_cols=189 Identities=21% Similarity=0.297 Sum_probs=130.5
Q ss_pred EEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc--CCCEEEeCCCCCCC
Q 007533 297 RIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNR 373 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIlVPGGfG~r 373 (599)
+|+|+ ||++ .|. ++.++|+.+|+.+.+ .+.+.. . +.+. ++||||+|||+.+.
T Consensus 5 ~i~vl-D~Gs---q~~~li~r~lrelg~~~~v----~p~~~~-~----------------~~l~~~~~dgIIlsGGp~sv 59 (511)
T PRK00074 5 KILIL-DFGS---QYTQLIARRVRELGVYSEI----VPYDIS-A----------------EEIRAFNPKGIILSGGPASV 59 (511)
T ss_pred EEEEE-ECCC---CcHHHHHHHHHHCCCeEEE----EECCCC-H----------------HHHhccCCCEEEECCCCccc
Confidence 69999 6874 454 789999999987644 222211 1 2233 56999999998764
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 374 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 374 g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
-.++.....+.+.+.++|+||||+|||+|+.++|++|.... . .+ +|.+++.
T Consensus 60 ~~~~~p~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~---~--------------------~e------~G~~~i~ 110 (511)
T PRK00074 60 YEEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVERAG---K--------------------RE------YGRAELE 110 (511)
T ss_pred ccCCCccccHHHHhCCCCEEEECHHHHHHHHHhCCeEEecC---C--------------------cc------cceEEEE
Confidence 32232334456677899999999999999999999884311 0 12 2344555
Q ss_pred EecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCc
Q 007533 454 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 533 (599)
Q Consensus 454 l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p 533 (599)
+.+++.++..+ +.. ...++.|++.| ..+ +.|++++|.++++. ++++++.+.| ++|+|||||++.++ .+
T Consensus 111 i~~~~~Lf~~l-~~~--~~v~~~H~d~V-----~~l-p~g~~vlA~s~~~~-v~ai~~~~~~-i~GvQFHPE~~~t~-~G 178 (511)
T PRK00074 111 VDNDSPLFKGL-PEE--QDVWMSHGDKV-----TEL-PEGFKVIASTENCP-IAAIANEERK-FYGVQFHPEVTHTP-QG 178 (511)
T ss_pred EcCCChhhhcC-CCc--eEEEEECCeEE-----Eec-CCCcEEEEEeCCCC-EEEEEeCCCC-EEEEeCCCCcCCch-hH
Confidence 55542344443 223 33456677765 334 78999999998876 9999999888 56999999999876 47
Q ss_pred hHHHHHHHHHHhcchhhh
Q 007533 534 SPLFLGLIAAACGQLDTL 551 (599)
Q Consensus 534 ~pLF~~Fv~aa~~~~~~~ 551 (599)
..+|++|+...+++...|
T Consensus 179 ~~il~nFl~~i~~~~~~~ 196 (511)
T PRK00074 179 KKLLENFVFDICGCKGDW 196 (511)
T ss_pred HHHHHHHHHHhcCCCCCc
Confidence 899999997776655444
|
|
| >PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-20 Score=204.69 Aligned_cols=188 Identities=17% Similarity=0.236 Sum_probs=126.9
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.+|+.|. +|. ++++.|+..|... + .++.+.+.+. .++ ...++||||++||||++...
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~~-v----~~~~~~~~~~----------~~~--~~~~~d~vIlsgGP~~p~~~ 60 (534)
T PRK14607 2 IILIDNYD----SFTYNIYQYIGELGPEE-I----EVVRNDEITI----------EEI--EALNPSHIVISPGPGRPEEA 60 (534)
T ss_pred EEEEECch----hHHHHHHHHHHHcCCCe-E----EEECCCCCCH----------HHH--HhcCCCEEEECCCCCChhhC
Confidence 78887766 555 7999999998751 1 1232322211 001 12368999999999986432
Q ss_pred -HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 377 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 377 -g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
..+..+++ .+.++|+||||+|||+|+.++|++|..... .+.|+ .+++...
T Consensus 61 ~~~~~li~~-~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~-----------------------~~~G~-----~~~v~~~ 111 (534)
T PRK14607 61 GISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKR-----------------------ILHGK-----TSPIDHN 111 (534)
T ss_pred CccHHHHHH-hhcCCCEEEEcHHHHHHHHHcCCeEecCCc-----------------------cccCC-----ceeEEEC
Confidence 23455665 367899999999999999999998854321 11233 1233332
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
.. +++..+. .. +...++|+|.+.... + +.+++++|+++++. +|+++++++|+ +|+|||||.... .+...
T Consensus 112 ~~-~lf~~~~-~~--~~v~~~Hs~~v~~~~---l-p~~~~vlA~s~d~~-i~a~~~~~~pi-~GvQFHPE~~~t-~~g~~ 180 (534)
T PRK14607 112 GK-GLFRGIP-NP--TVATRYHSLVVEEAS---L-PECLEVTAKSDDGE-IMGIRHKEHPI-FGVQFHPESILT-EEGKR 180 (534)
T ss_pred CC-cchhcCC-CC--cEEeeccchheeccc---C-CCCeEEEEEcCCCC-EEEEEECCCCE-EEEEeCCCCCCC-hhHHH
Confidence 22 3443332 12 334677888875422 3 67899999998887 99999999995 699999997654 46789
Q ss_pred HHHHHHHHHhc
Q 007533 536 LFLGLIAAACG 546 (599)
Q Consensus 536 LF~~Fv~aa~~ 546 (599)
+|.+|+..+..
T Consensus 181 i~~nFl~~~~~ 191 (534)
T PRK14607 181 ILKNFLNYQRE 191 (534)
T ss_pred HHHHHHHHhhc
Confidence 99999998754
|
|
| >PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=178.06 Aligned_cols=186 Identities=20% Similarity=0.235 Sum_probs=120.6
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|+|+ ||+.. +-.|+.+||+..+.+.. |+... +.+.++|+||+||+ |+...
T Consensus 2 i~ii-dyg~g--Nl~s~~~al~~~~~~~~------~~~~~------------------~~l~~~d~iIlPG~-g~~~~~~ 53 (210)
T PRK14004 2 IAIL-DYGMG--NIHSCLKAVSLYTKDFV------FTSDP------------------ETIENSKALILPGD-GHFDKAM 53 (210)
T ss_pred EEEE-ECCCc--hHHHHHHHHHHcCCeEE------EECCH------------------HHhccCCEEEECCC-CchHHHH
Confidence 8899 79866 78999999999987542 34321 45789999999997 43221
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc----------ccccccCCCccccCCCCCCCeeeeCCC--CCc
Q 007533 376 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFAR----------SVLNLRDANSTEFDPNTKNPCVIFMPE--GSK 438 (599)
Q Consensus 376 -----eg~i~aik~are~~iP~LGICLGmQll~iefgr----------~Vlgl~dA~S~Ef~~~~~~~vi~~mpe--~~~ 438 (599)
.+....++.+.+.++|+||||+|||+|+.++.. +-||+-++...+ ||. ...
T Consensus 54 ~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~------------~~~~~~~~ 121 (210)
T PRK14004 54 ENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKK------------FEGKDFKV 121 (210)
T ss_pred HHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEE------------cCCCCCcC
Confidence 256777777778899999999999999876642 123332322222 232 246
Q ss_pred CcCCCccccCceeeEEe--cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCC-CCeEEEEEeCCCC
Q 007533 439 THMGGTMRLGSRRTYFQ--IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEIVELPNHP 515 (599)
Q Consensus 439 ~~~GgtmrLG~~~v~l~--~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~d-g~~vE~iE~~~hp 515 (599)
+|+||+. +.+. ..++++..+- . ....+|.|+|..++. .-+..++.+++ +..+.++. .+.+
T Consensus 122 ph~Gw~~------v~~~~~~~~~lf~~l~-~--~~~v~~~HS~~~~~~-------~~l~~sa~~~~~g~~~~a~~-~~~~ 184 (210)
T PRK14004 122 PHIGWNR------LQIRRKDKSKLLKGIG-D--QSFFYFIHSYRPTGA-------EGNAITGLCDYYQEKFPAVV-EKEN 184 (210)
T ss_pred CccCccc------ceeccCCCCccccCCC-C--CCEEEEeceeecCCC-------CcceEEEeeeECCEEEEEEE-ecCC
Confidence 8999962 2222 1223444443 1 234678899854321 12445666655 55444555 4555
Q ss_pred eEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 516 YFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 516 ffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
++|+|||||++. + .+..++++|++.
T Consensus 185 -i~GvQFHPE~s~-~-~G~~iL~nfl~~ 209 (210)
T PRK14004 185 -IFGTQFHPEKSH-T-HGLKLLENFIEF 209 (210)
T ss_pred -EEEEeCCcccCc-h-hHHHHHHHHHhh
Confidence 569999999887 4 688999999863
|
|
| >PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-19 Score=175.50 Aligned_cols=194 Identities=20% Similarity=0.228 Sum_probs=120.0
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc--
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-- 374 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg-- 374 (599)
+|+++ +|+.. .-.++.++|+..|+++.+ +.. + +.+.++||||+|||.....
T Consensus 1 ~i~~~-d~~~~--~~~~i~~~l~~~G~~v~~------~~~-----------~-------~~l~~~d~iiipG~~~~~~~~ 53 (205)
T PRK13141 1 MIAII-DYGMG--NLRSVEKALERLGAEAVI------TSD-----------P-------EEILAADGVILPGVGAFPDAM 53 (205)
T ss_pred CEEEE-EcCCc--hHHHHHHHHHHCCCeEEE------ECC-----------H-------HHhccCCEEEECCCCchHHHH
Confidence 37888 68743 347899999999987654 211 1 3567899999998632111
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc--cc--ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccc
Q 007533 375 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR--SV--LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 446 (599)
Q Consensus 375 ----~eg~i~aik~are~~iP~LGICLGmQll~iefgr--~V--lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtmr 446 (599)
..+....++.+.++++|+||||+|||+|+.++.. .+ +|+-++. +...+. +.-++...
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~------------v~~~~~---~~~~~~~~ 118 (205)
T PRK13141 54 ANLRERGLDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGR------------VRRFPP---EEGLKVPH 118 (205)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEE------------EEEcCC---CCCCcccE
Confidence 1245677888888999999999999999876311 11 1111110 111110 00001122
Q ss_pred cCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCC
Q 007533 447 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEY 526 (599)
Q Consensus 447 LG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ 526 (599)
.|.+++.+.+++.+++.+. ....+ .+.|++.+.+ +.++.+++.++++..++++.. +.+ ++|+|||||+
T Consensus 119 ~g~~~i~~~~~~~l~~~l~-~~~~v--~~~Hs~~v~~-------~~~~~v~a~~~~~~~~~a~~~-~~~-i~GvQfHPE~ 186 (205)
T PRK13141 119 MGWNQLELKKESPLLKGIP-DGAYV--YFVHSYYADP-------CDEEYVAATTDYGVEFPAAVG-KDN-VFGAQFHPEK 186 (205)
T ss_pred ecCccceeCCCChhhhCCC-CCCEE--EEECeeEecc-------CCcCeEEEEEeCCcEEEEEEe-cCC-EEEEeCCCcc
Confidence 3445566555534444442 22233 4568888742 456788888877755777765 345 6799999999
Q ss_pred cCCCCCchHHHHHHHHHHhc
Q 007533 527 KSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 527 ss~p~~p~pLF~~Fv~aa~~ 546 (599)
... ....+|++|+++|.+
T Consensus 187 ~~~--~g~~l~~~fl~~~~~ 204 (205)
T PRK13141 187 SGD--VGLKILKNFVEMVEE 204 (205)
T ss_pred chH--HHHHHHHHHHHHhhc
Confidence 753 578999999998754
|
|
| >PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=177.14 Aligned_cols=175 Identities=21% Similarity=0.261 Sum_probs=108.7
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-ch-
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-GV- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-g~- 375 (599)
|+|+ ||+.. +..|+.+||++.|+++. |+... +.+.++|+||+||+--.. ..
T Consensus 2 i~ii-dyg~g--N~~s~~~al~~~g~~~~------~v~~~------------------~~l~~~D~lIlPG~g~~~~~~~ 54 (192)
T PRK13142 2 IVIV-DYGLG--NISNVKRAIEHLGYEVV------VSNTS------------------KIIDQAETIILPGVGHFKDAMS 54 (192)
T ss_pred EEEE-EcCCc--cHHHHHHHHHHcCCCEE------EEeCH------------------HHhccCCEEEECCCCCHHHHHH
Confidence 8899 79855 88999999999887653 34321 457789999999962211 11
Q ss_pred ----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--c-cccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 007533 376 ----QGKILAAKYAREHRIPYLGICLGMQVAVIEF--A-RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 448 (599)
Q Consensus 376 ----eg~i~aik~are~~iP~LGICLGmQll~ief--g-r~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG 448 (599)
.++..+++. ..++|+||||+|||+|+-.. + .+-+|+-+.....| -++.+++||||+..-
T Consensus 55 ~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf-----------~~~~~vph~GWn~~~- 120 (192)
T PRK13142 55 EIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRI-----------QTEYPVPHLGWNNLV- 120 (192)
T ss_pred HHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEEC-----------CCCCCCCcccccccC-
Confidence 234555655 46899999999999997654 1 12344433322222 122357899996321
Q ss_pred ceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCC-eEEEEEeCCCCeEEEEcccCCCc
Q 007533 449 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 449 ~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~-~vE~iE~~~hpffvGvQFHPE~s 527 (599)
...+ ++. -+.++.|+|.+.. ... +.+.+..|. .+-+++. .+ ++|+|||||++
T Consensus 121 -------~~~~----l~~----~~~yFVhSy~v~~-------~~~--v~~~~~yg~~~~~~v~~--~n-~~g~QFHPEkS 173 (192)
T PRK13142 121 -------SKHP----MLN----QDVYFVHSYQAPM-------SEN--VIAYAQYGADIPAIVQF--NN-YIGIQFHPEKS 173 (192)
T ss_pred -------CCCc----ccc----cEEEEECCCeECC-------CCC--EEEEEECCCeEEEEEEc--CC-EEEEecCcccC
Confidence 0111 121 2457889998821 112 334444443 2344432 23 67999999998
Q ss_pred CCCCCchHHHHHHHH
Q 007533 528 SRPGKPSPLFLGLIA 542 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~ 542 (599)
... +..++++|++
T Consensus 174 ~~~--G~~ll~nf~~ 186 (192)
T PRK13142 174 GTY--GLQILRQAIQ 186 (192)
T ss_pred cHh--HHHHHHHHHh
Confidence 754 7889999965
|
|
| >PLN02889 oxo-acid-lyase/anthranilate synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=203.05 Aligned_cols=196 Identities=17% Similarity=0.214 Sum_probs=128.3
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHc-CCcceeeeEEEEecCCCCCCccccCCchhhhHHHH---hccCCCEEEeCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK---LLKGADGILVPG 368 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~ha-G~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~---~L~~~DGIlVPG 368 (599)
..|+|.+|+.|. +|. +++..|+.. |..+.+ +..++++ +.++.. .+..+|||||+|
T Consensus 80 ~~~~iLlIDnyD----SfTyNL~~~L~~~~g~~~~V------v~nd~~~----------~~~~~~~~~~~~~~d~IVlSP 139 (918)
T PLN02889 80 EFVRTLLIDNYD----SYTYNIYQELSIVNGVPPVV------VRNDEWT----------WEEVYHYLYEEKAFDNIVISP 139 (918)
T ss_pred ccceEEEEeCCC----chHHHHHHHHHHhcCCCEEE------EeCCCCC----------HHHHHhhhhcccCCCEEEECC
Confidence 358999999887 444 688888887 776543 2222221 111111 246889999999
Q ss_pred CCCCCchh---HH-HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 369 GFGNRGVQ---GK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 369 GfG~rg~e---g~-i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
|||++... |. +..++.+ .++|+||||||||+|+.+||++|...+. +..|.+
T Consensus 140 GPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~-----------------------~~HG~~ 194 (918)
T PLN02889 140 GPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPE-----------------------PVHGRL 194 (918)
T ss_pred CCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCC-----------------------ceeeee
Confidence 99998532 21 2333322 4799999999999999999999865331 111321
Q ss_pred cccCceeeEEecCCchhhhccCC---ceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCC-------------------
Q 007533 445 MRLGSRRTYFQIKDCKSAKLYGN---RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET------------------- 502 (599)
Q Consensus 445 mrLG~~~v~l~~~~s~l~~iyg~---~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~d------------------- 502 (599)
..+.. .+..++..+... ...+ .|+ |+..|.+..+ +.+++++|++.+
T Consensus 195 -----s~I~h-~~~~lF~glp~~~~~~f~v-~RY-HSL~v~~~~l----P~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~ 262 (918)
T PLN02889 195 -----SEIEH-NGCRLFDDIPSGRNSGFKV-VRY-HSLVIDAESL----PKELVPIAWTSSSDTLSFLESQKSGLVPDAY 262 (918)
T ss_pred -----eeEee-cCchhhcCCCcCCCCCceE-EeC-CCcccccCCC----CCceEEEEEECCCcccccccccccccccccc
Confidence 11221 222345555321 1223 344 8888765433 567888887654
Q ss_pred ---------------------------------CCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcch
Q 007533 503 ---------------------------------SQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 503 ---------------------------------g~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 548 (599)
+..+++++|+..|+ +|||||||....+ .+..||.+|++++..+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~-~GVQfHPESi~t~-~G~~l~~nF~~~~~~~~ 339 (918)
T PLN02889 263 ESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPH-YGLQFHPESIATC-YGRQIFKNFREITQDYW 339 (918)
T ss_pred cccccccccccccccccccccccccccccccCCCCeeEEEEECCCce-EEEEeCCccccCc-hhHHHHHHHHHHHHHHh
Confidence 13599999999996 5999999998886 47899999999987553
|
|
| >PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=169.62 Aligned_cols=194 Identities=20% Similarity=0.233 Sum_probs=118.4
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC--
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-- 373 (599)
+||+|+ +|+.. .-.++.++|+.+|+++.+ +.. + ..++++|||++|||....
T Consensus 1 ~~~~v~-~~~~~--~~~~~~~~l~~~G~~~~~------~~~-----------~-------~~~~~~d~iii~G~~~~~~~ 53 (200)
T PRK13143 1 MMIVII-DYGVG--NLRSVSKALERAGAEVVI------TSD-----------P-------EEILDADGIVLPGVGAFGAA 53 (200)
T ss_pred CeEEEE-ECCCc--cHHHHHHHHHHCCCeEEE------ECC-----------H-------HHHccCCEEEECCCCCHHHH
Confidence 578999 68743 447999999999987643 111 0 346789999999853321
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 007533 374 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451 (599)
Q Consensus 374 --g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~ 451 (599)
..+.....++.+.++++|+||||+|||+|+.++... -..+.+. -+ ...+....+.....+ .|.++
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g-~~~~~lg--~~----~g~v~~~~~~~~~~~------~g~~~ 120 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQLLFESSEEG-GGVRGLG--LF----PGRVVRFPAGVKVPH------MGWNT 120 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhhccC-CCCCCcc--ee----eEEEEEcCCCCCCCe------ecceE
Confidence 224567788889999999999999999998754210 0000000 00 000000000001122 34455
Q ss_pred eEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 452 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 452 v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
+.+..++.+++.+ . ... ..+.|+|.+.+ ..++.++++++++..+++....+ | ++|+|||||++..
T Consensus 121 v~~~~~~~l~~~l-~-~~~--~~~~Hs~~~~~-------~~~~~~la~~~~~~~~~~~~~~~-~-~~gvQfHPE~~~~-- 185 (200)
T PRK13143 121 VKVVKDCPLFEGI-D-GEY--VYFVHSYYAYP-------DDEDYVVATTDYGIEFPAAVCND-N-VFGTQFHPEKSGE-- 185 (200)
T ss_pred EEEcCCChhhccC-C-CcE--EEEEeeeeeCC-------CCcceEEEEEcCCCEEEEEEEcC-C-EEEEeCCCccchH--
Confidence 5555543344444 2 222 34578887753 34578889888776455555543 5 6799999999742
Q ss_pred CchHHHHHHHHHH
Q 007533 532 KPSPLFLGLIAAA 544 (599)
Q Consensus 532 ~p~pLF~~Fv~aa 544 (599)
....+|++|++.+
T Consensus 186 ~g~~i~~~f~~~~ 198 (200)
T PRK13143 186 TGLKILENFVELI 198 (200)
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999876
|
|
| >PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=170.37 Aligned_cols=185 Identities=22% Similarity=0.197 Sum_probs=111.5
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|++| ||+.. +-.|+.++|+..|+++.+ +... +.+.++|+||+||+. +...
T Consensus 2 i~ii-d~g~~--n~~~v~~~l~~~g~~~~~------~~~~------------------~~l~~~d~lilPG~g-~~~~~~ 53 (201)
T PRK13152 2 IALI-DYKAG--NLNSVAKAFEKIGAINFI------AKNP------------------KDLQKADKLLLPGVG-SFKEAM 53 (201)
T ss_pred EEEE-ECCCC--cHHHHHHHHHHCCCeEEE------ECCH------------------HHHcCCCEEEECCCC-chHHHH
Confidence 8899 69854 668999999999876432 3221 346789999998753 3211
Q ss_pred -----hHHHHH-HHHHHHcCCCEEEEehhHHHHHHH-h-ccccccccCCCccccCCCCCCCeeeeCCC---CCcCcCCCc
Q 007533 376 -----QGKILA-AKYAREHRIPYLGICLGMQVAVIE-F-ARSVLNLRDANSTEFDPNTKNPCVIFMPE---GSKTHMGGT 444 (599)
Q Consensus 376 -----eg~i~a-ik~are~~iP~LGICLGmQll~ie-f-gr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe---~~~~~~Ggt 444 (599)
.+.... .+++.+.++|+||||+|||+|+.+ . ++.+-++. .+ +..+. .++. ...+|+||
T Consensus 54 ~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg-----~~----~g~v~-~~~~~~~~~~~~~g~- 122 (201)
T PRK13152 54 KNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLG-----FI----EGEVV-KFEEDLNLKIPHMGW- 122 (201)
T ss_pred HHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcc-----cc----cEEEE-ECCCCCCCcCCccCe-
Confidence 122333 444567899999999999999875 1 22111110 01 01111 1111 12356665
Q ss_pred cccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCC-eEEEEEeCCCCeEEEEccc
Q 007533 445 MRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEIVELPNHPYFIGVQFH 523 (599)
Q Consensus 445 mrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~-~vE~iE~~~hpffvGvQFH 523 (599)
+++.+.+++.++..+ +. .....+.|+|.+... ...+++.++++. .+++++ +.+ ++|+|||
T Consensus 123 -----~~v~~~~~~~l~~~l-~~--~~~~~~vHS~~v~~~--------~~~v~a~~~~g~~~~~a~~--~~~-i~GvQFH 183 (201)
T PRK13152 123 -----NELEILKQSPLYQGI-PE--KSDFYFVHSFYVKCK--------DEFVSAKAQYGHKFVASLQ--KDN-IFATQFH 183 (201)
T ss_pred -----EEEEECCCChhhhCC-CC--CCeEEEEcccEeecC--------CCcEEEEECCCCEEEEEEe--cCC-EEEEeCC
Confidence 456655553344443 22 234578899988531 134677777764 244555 334 7899999
Q ss_pred CCCcCCCCCchHHHHHHHH
Q 007533 524 PEYKSRPGKPSPLFLGLIA 542 (599)
Q Consensus 524 PE~ss~p~~p~pLF~~Fv~ 542 (599)
||++.. ....||++|++
T Consensus 184 PE~~~~--~g~~ll~~Fl~ 200 (201)
T PRK13152 184 PEKSQN--LGLKLLENFAR 200 (201)
T ss_pred CeecCh--hhHHHHHHHHh
Confidence 999853 46889999975
|
|
| >PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=193.35 Aligned_cols=187 Identities=18% Similarity=0.172 Sum_probs=121.6
Q ss_pred eEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc--cCCCEEEeCCCCCC
Q 007533 296 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 372 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlVPGGfG~ 372 (599)
.+|.+|+.|. +|. .+.+.|+..|+++.+. .+..+.+. ..+.+ .++|+||++||||+
T Consensus 2 ~~iLiIDn~d----sft~nl~~~lr~~g~~v~V~---~~~~~~~~--------------~~~~l~~~~~~~IIlSpGPg~ 60 (531)
T PRK09522 2 ADILLLDNID----SFTYNLADQLRSNGHNVVIY---RNHIPAQT--------------LIERLATMSNPVLMLSPGPGV 60 (531)
T ss_pred CeEEEEeCCC----hHHHHHHHHHHHCCCCEEEE---ECCCCCcc--------------CHHHHHhcCcCEEEEcCCCCC
Confidence 4799997665 555 5888898888766442 11111000 01222 35789999999999
Q ss_pred CchhHHH-HHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 007533 373 RGVQGKI-LAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451 (599)
Q Consensus 373 rg~eg~i-~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~ 451 (599)
+...+.. ..+++. ..++|+||||+|||+|+.+||++|...+. ...|.+ ..
T Consensus 61 p~d~~~~~~i~~~~-~~~iPILGIClG~QlLa~a~GG~V~~~~~-----------------------~~~G~~-----~~ 111 (531)
T PRK09522 61 PSEAGCMPELLTRL-RGKLPIIGICLGHQAIVEAYGGYVGQAGE-----------------------ILHGKA-----SS 111 (531)
T ss_pred hhhCCCCHHHHHHH-hcCCCEEEEcHHHHHHHHhcCCEEEeCCc-----------------------eeeeeE-----EE
Confidence 8643322 333332 35899999999999999999999853110 011211 11
Q ss_pred eEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 452 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 452 v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
+.. .+.+++..+. ....+ .+.|++.+. .+ +.+++++|. .++. ++++++++.|+ +|+|||||...++
T Consensus 112 i~~-~~~~lf~~~~-~~~~v--~~~Hs~~v~-----~l-P~~l~vlA~-sd~~-v~ai~~~~~~i-~GVQFHPEs~~T~- 177 (531)
T PRK09522 112 IEH-DGQAMFAGLT-NPLPV--ARYHSLVGS-----NI-PAGLTINAH-FNGM-VMAVRHDADRV-CGFQFHPESILTT- 177 (531)
T ss_pred Eee-cCCccccCCC-CCcEE--EEehheecc-----cC-CCCcEEEEe-cCCC-EEEEEECCCCE-EEEEecCccccCc-
Confidence 111 1113343332 22334 455776653 34 789999997 5666 99999999885 5999999999887
Q ss_pred CchHHHHHHHHHHhc
Q 007533 532 KPSPLFLGLIAAACG 546 (599)
Q Consensus 532 ~p~pLF~~Fv~aa~~ 546 (599)
.+..+|++|++.+..
T Consensus 178 ~G~~il~NFl~~~~~ 192 (531)
T PRK09522 178 QGARLLEQTLAWAQQ 192 (531)
T ss_pred chHHHHHHHHHHHhh
Confidence 688999999988743
|
|
| >cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=179.03 Aligned_cols=177 Identities=24% Similarity=0.300 Sum_probs=110.2
Q ss_pred hHH--HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc----hhHHHHHHH
Q 007533 310 AYL--SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----VQGKILAAK 383 (599)
Q Consensus 310 aY~--SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg----~eg~i~aik 383 (599)
+|. |.+++|+.+|+.+. +.+++++. + .+.+.++.+||||+|||+.+.. ......+++
T Consensus 19 ~yi~~~Yv~~l~~aG~~vv----pi~~~~~~---~----------~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~ 81 (273)
T cd01747 19 SYIAASYVKFLESAGARVV----PIWINESE---E----------YYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYN 81 (273)
T ss_pred HHHHHHHHHHHHHCCCeEE----EEEeCCcH---H----------HHHHHHhhCCEEEECCCCCcCCccccchHHHHHHH
Confidence 444 78999999999753 33444321 1 1235689999999999975432 222345567
Q ss_pred HHHHcC-----CCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecC-
Q 007533 384 YAREHR-----IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK- 457 (599)
Q Consensus 384 ~are~~-----iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~- 457 (599)
.|++.+ +|+||||||||+|+.++|+++.-+.. + ...|+ ..++.+.+.
T Consensus 82 ~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~-----~-----------------~~~~~-----~~~l~~t~~~ 134 (273)
T cd01747 82 LALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLEA-----T-----------------EATNS-----ALPLNFTEDA 134 (273)
T ss_pred HHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccCC-----C-----------------ccccc-----eEEEEEcccc
Confidence 776654 89999999999999999876421111 1 01121 123333321
Q ss_pred --CchhhhccC-----CceeEEeeeeeeeeeCchhhhh---hccCCeEEEEEeCC--CC-eEEEEEeCCCCeEEEEcccC
Q 007533 458 --DCKSAKLYG-----NRTFIDERHRHRYEVNPDMIAR---LENAGLSFTGKDET--SQ-RMEIVELPNHPYFIGVQFHP 524 (599)
Q Consensus 458 --~s~l~~iyg-----~~~~I~erHrHrYeVnp~~v~~---le~~Gl~~sa~s~d--g~-~vE~iE~~~hpffvGvQFHP 524 (599)
+.++..+-. -......+|+|+|.+.++.... | +..+.+++++.+ |. .++++|++++|+ +|+||||
T Consensus 135 ~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l-~~~~~vla~~~d~~g~~fis~ie~~~~pi-~gvQFHP 212 (273)
T cd01747 135 LQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLL-SDFFNVLTTNDDWNGVEFISTVEAYKYPI-YGVQWHP 212 (273)
T ss_pred ccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhccccccc-ccceEEEEEEecCCCceEEEEEEecCCce-EEEecCC
Confidence 112222110 0112246889999998866432 3 355788888755 43 378999999996 5999999
Q ss_pred CCcCCCCC
Q 007533 525 EYKSRPGK 532 (599)
Q Consensus 525 E~ss~p~~ 532 (599)
|++.....
T Consensus 213 Eks~few~ 220 (273)
T cd01747 213 EKNAFEWK 220 (273)
T ss_pred Cccccccc
Confidence 98876554
|
Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=169.28 Aligned_cols=184 Identities=24% Similarity=0.253 Sum_probs=113.0
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|+|+ ||+.. ++.|+.++|+..|+++.+ +.. + +.+.++|+||+||| |++..
T Consensus 2 i~vi-d~g~g--n~~~~~~~l~~~g~~v~~------~~~-----------~-------~~l~~~d~lilpG~-g~~~~~~ 53 (199)
T PRK13181 2 IAII-DYGAG--NLRSVANALKRLGVEAVV------SSD-----------P-------EEIAGADKVILPGV-GAFGQAM 53 (199)
T ss_pred EEEE-eCCCC--hHHHHHHHHHHCCCcEEE------EcC-----------h-------HHhccCCEEEECCC-CCHHHHH
Confidence 7888 68865 788999999999977543 211 1 35678999999885 33211
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc---ccccccCCCccccCCCCCCCeeeeCCC--CCcCcCCCcc
Q 007533 376 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFAR---SVLNLRDANSTEFDPNTKNPCVIFMPE--GSKTHMGGTM 445 (599)
Q Consensus 376 -----eg~i~aik~are~~iP~LGICLGmQll~iefgr---~Vlgl~dA~S~Ef~~~~~~~vi~~mpe--~~~~~~Ggtm 445 (599)
.+....++.+++.++|+||||+|||+|+.++.. +-+|+-++... .+|. ...+++||
T Consensus 54 ~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~------------~~~~~~~~~~~~G~-- 119 (199)
T PRK13181 54 RSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVK------------RFRSEPLKVPQMGW-- 119 (199)
T ss_pred HHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEE------------EcCCCCCCCCccCc--
Confidence 245677888888999999999999999887321 01111111111 1111 11245565
Q ss_pred ccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeE-EEEEeCCCCeEEEEcccC
Q 007533 446 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRM-EIVELPNHPYFIGVQFHP 524 (599)
Q Consensus 446 rLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~v-E~iE~~~hpffvGvQFHP 524 (599)
+++.+.+++.+++.+. ... ...+.|+|.+.+. + ...++|.++++..+ ++++ +.+ ++|+||||
T Consensus 120 ----~~v~~~~~~~lf~~l~-~~~--~~~~~Hs~~v~~~------~-~~~~lA~s~~~~~~~~~~~--~~~-i~GvQFHP 182 (199)
T PRK13181 120 ----NSVKPLKESPLFKGIE-EGS--YFYFVHSYYVPCE------D-PEDVLATTEYGVPFCSAVA--KDN-IYAVQFHP 182 (199)
T ss_pred ----cccccCCCChhHcCCC-CCC--EEEEeCeeEeccC------C-cccEEEEEcCCCEEEEEEE--CCC-EEEEECCC
Confidence 3344334423444432 222 3457788887432 1 13467887765532 3333 445 67999999
Q ss_pred CCcCCCCCchHHHHHHHH
Q 007533 525 EYKSRPGKPSPLFLGLIA 542 (599)
Q Consensus 525 E~ss~p~~p~pLF~~Fv~ 542 (599)
|++. .....+|++|++
T Consensus 183 E~~~--~~g~~ll~nfl~ 198 (199)
T PRK13181 183 EKSG--KAGLKLLKNFAE 198 (199)
T ss_pred ccCC--HHHHHHHHHHHh
Confidence 9874 247889999975
|
|
| >cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=170.44 Aligned_cols=186 Identities=23% Similarity=0.276 Sum_probs=114.4
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|+|+ +|+.. +-.++.++|+.+|+++.+ ++.. +.++++|+|++||| +.+..
T Consensus 1 i~i~-d~g~~--~~~~~~~~l~~~g~~v~v------~~~~------------------~~l~~~d~iiipG~-~~~~~~~ 52 (198)
T cd01748 1 IAII-DYGMG--NLRSVANALERLGAEVII------TSDP------------------EEILSADKLILPGV-GAFGDAM 52 (198)
T ss_pred CEEE-eCCCC--hHHHHHHHHHHCCCeEEE------EcCh------------------HHhccCCEEEECCC-CcHHHHH
Confidence 5677 68754 566899999999987654 2211 34678999999885 43321
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--ccccccccCCCccccCCCCCCCeeeeCCC---CCcCcCCCcc
Q 007533 376 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNLRDANSTEFDPNTKNPCVIFMPE---GSKTHMGGTM 445 (599)
Q Consensus 376 -----eg~i~aik~are~~iP~LGICLGmQll~ief--gr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe---~~~~~~Ggtm 445 (599)
.+....++.+.++++|+||||+|||+|+.++ ++.+-++. -++ .. +..++. ...+++|+
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg-----~~~----g~-v~~~~~~~~~~~~~~G~-- 120 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLG-----LIP----GK-VVRFPASEGLKVPHMGW-- 120 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCC-----Ccc----eE-EEECCCCCCceEEEecc--
Confidence 2467888888889999999999999998763 11111100 000 00 111111 11234454
Q ss_pred ccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCC
Q 007533 446 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPE 525 (599)
Q Consensus 446 rLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE 525 (599)
+++...+++.++..+.. . ....+.|+|.+.+ ...+.++|.++++..+.++ ..+.+ ++|+|||||
T Consensus 121 ----~~v~~~~~~~lf~~l~~-~--~~v~~~Hs~~v~~-------~~~~~~la~s~~~~~~~~~-~~~~~-i~GvQFHPE 184 (198)
T cd01748 121 ----NQLEITKESPLFKGIPD-G--SYFYFVHSYYAPP-------DDPDYILATTDYGGKFPAA-VEKDN-IFGTQFHPE 184 (198)
T ss_pred ----ceEEECCCChhhhCCCC-C--CeEEEEeEEEEec-------CCcceEEEEecCCCeEEEE-EEcCC-EEEEECCCc
Confidence 44555555345555532 2 3346788888853 2235678877776534443 44556 679999999
Q ss_pred CcCCCCCchHHHHHHH
Q 007533 526 YKSRPGKPSPLFLGLI 541 (599)
Q Consensus 526 ~ss~p~~p~pLF~~Fv 541 (599)
++.. .+..++++|+
T Consensus 185 ~~~~--~g~~~~~nf~ 198 (198)
T cd01748 185 KSGK--AGLKLLKNFL 198 (198)
T ss_pred cccH--hHHHHHHhhC
Confidence 9843 5778888884
|
Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=174.53 Aligned_cols=201 Identities=15% Similarity=0.209 Sum_probs=119.5
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
+||+|+. ++.++.++.++|+++|+++.. +.. | +.+.++|||++||||++.-
T Consensus 2 m~igVLa----~qG~~~e~~~aL~~lG~ev~~------v~~-----------~-------~~L~~~DgLILPGGfs~~~~ 53 (248)
T PLN02832 2 MAIGVLA----LQGSFNEHIAALRRLGVEAVE------VRK-----------P-------EQLEGVSGLIIPGGESTTMA 53 (248)
T ss_pred cEEEEEe----CCCchHHHHHHHHHCCCcEEE------eCC-----------H-------HHhccCCEEEeCCCHHHHHH
Confidence 6899995 444889999999999987633 221 1 4678999999999987521
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc------cccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 375 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFA------RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 375 ----~eg~i~aik~are~~iP~LGICLGmQll~iefg------r~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
..++...++.+.++++|+||||+|||+|+-..- +..+|.-+..... .--..++..+-+..+.+|+||+
T Consensus 54 ~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~R--N~~g~qv~sfe~~l~ip~~gwn 131 (248)
T PLN02832 54 KLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHR--NFFGSQINSFETELPVPELAAS 131 (248)
T ss_pred HHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEe--cccCceeEeEEcCCcCCccccc
Confidence 125677888888889999999999999976531 1123332221111 0112233333234567899986
Q ss_pred c-ccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCC--eEEEEEeCCCCeEEEEc
Q 007533 445 M-RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ--RMEIVELPNHPYFIGVQ 521 (599)
Q Consensus 445 m-rLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~--~vE~iE~~~hpffvGvQ 521 (599)
. +....+..+... +.+... + . ..+.-|+|.++++... ...++++.|. .+-+++-. .++|+|
T Consensus 132 ~~~~~~~~~vFira-p~i~~~-~--~--~v~~l~sy~~~~~~~~-------~~~a~~~y~~~~~~~aV~qg---nvlatq 195 (248)
T PLN02832 132 EGGPETFRAVFIRA-PAILSV-G--P--GVEVLAEYPLPSEKAL-------YSSSTDAEGRDKVIVAVKQG---NLLATA 195 (248)
T ss_pred cccccccceEEecC-CceEeC-C--C--cEEEEEEecccccccc-------cccccccccCCceEEEEEeC---CEEEEE
Confidence 3 111222333332 122111 1 1 1356688876553211 1122333331 23333322 268999
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHhc
Q 007533 522 FHPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 522 FHPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
||||+++.. .++++|++.+..
T Consensus 196 FHPEls~d~----rih~~Fl~~~~~ 216 (248)
T PLN02832 196 FHPELTADT----RWHSYFVKMVSE 216 (248)
T ss_pred ccCccCCcc----HHHHHHHHHHHH
Confidence 999999876 788889888754
|
|
| >cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-18 Score=164.18 Aligned_cols=139 Identities=23% Similarity=0.286 Sum_probs=98.2
Q ss_pred hccCCCEEEeCCCCCCC---c---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCee
Q 007533 357 LLKGADGILVPGGFGNR---G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 430 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~r---g---~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi 430 (599)
.+.++||||+|||+.+. . .......++++.++++|+||||+|||+++.++|++|...+.
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~--------------- 107 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPK--------------- 107 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCC---------------
Confidence 57899999999998754 1 25577889999999999999999999999999988753211
Q ss_pred eeCCCCCcCcCCCccccCceeeEEecCCchhhhccCC-ceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEE
Q 007533 431 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIV 509 (599)
Q Consensus 431 ~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~-~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~i 509 (599)
| ...|.+++.+.+. .....++.+ ...+...+.|+++|. .+ +.|++++|+++++. ++++
T Consensus 108 -----------~--~~~g~~~v~~~~~-~~~~~l~~~~~~~~~v~~~H~~~v~-----~l-p~~~~~la~~~~~~-v~~~ 166 (188)
T cd01741 108 -----------G--WEIGWFPVTLTEA-GKADPLFAGLPDEFPVFHWHGDTVV-----EL-PPGAVLLASSEACP-NQAF 166 (188)
T ss_pred -----------c--ceeEEEEEEeccc-cccCchhhcCCCcceEEEEeccChh-----hC-CCCCEEeecCCCCC-cceE
Confidence 1 1123456655543 111112211 123445677877664 34 78999999998887 9999
Q ss_pred EeCCCCeEEEEcccCCCcCCCCCchHHHHHHH
Q 007533 510 ELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLI 541 (599)
Q Consensus 510 E~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv 541 (599)
+.+ ..++|+||||| ..+|++|+
T Consensus 167 ~~~--~~~~g~QfHPE--------~~~~~~f~ 188 (188)
T cd01741 167 RYG--DRALGLQFHPE--------ERLLRNFL 188 (188)
T ss_pred Eec--CCEEEEccCch--------HHHHhhhC
Confidence 987 34689999999 56777763
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >PRK13527 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-18 Score=165.07 Aligned_cols=191 Identities=17% Similarity=0.268 Sum_probs=113.6
Q ss_pred eEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-
Q 007533 296 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r- 373 (599)
||||++ -+....+.|. ++.++|+..|..+.+ .++... +.+.++|+|++|||++..
T Consensus 1 ~~i~vl-~~~~~~~e~~~~~~~~l~~~g~~~~~----~~~~~~------------------~~l~~~d~iii~GG~~~~~ 57 (200)
T PRK13527 1 MKIGVL-ALQGDVEEHIDALKRALDELGIDGEV----VEVRRP------------------GDLPDCDALIIPGGESTTI 57 (200)
T ss_pred CEEEEE-EECCccHHHHHHHHHHHHhcCCCeEE----EEeCCh------------------HHhccCCEEEECCCcHHHH
Confidence 467766 2333333443 677888888876543 333210 356789999999998764
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc-cccccCCCccccCCCCCCCeeeeCCCC-CcCcCCCcccc
Q 007533 374 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS-VLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRL 447 (599)
Q Consensus 374 ----g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~-Vlgl~dA~S~Ef~~~~~~~vi~~mpe~-~~~~~GgtmrL 447 (599)
...+....++.+.++++|+||||+|||+|+.++++. +.+ .. .+.+-.+|-. .....|+...
T Consensus 58 ~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~---~~---------~~~lG~~~~~v~~~~~g~~~~- 124 (200)
T PRK13527 58 GRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTK---TE---------QPLLGLMDVTVKRNAFGRQRD- 124 (200)
T ss_pred HHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCC---CC---------CceeeeeEEEEeeccccCccc-
Confidence 223467888888889999999999999999998763 211 10 0111111100 0001121100
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
.+... .++..+ + ......+.|++.+ ..+ +++++++|.++++ +++++. .+ ++|+|||||++
T Consensus 125 -----~~~~~-~~~~~~-~--~~~~~~~~H~~~v-----~~l-p~~~~~la~~~~~--~~a~~~--~~-~~g~QfHPE~~ 184 (200)
T PRK13527 125 -----SFEAE-IDLSGL-D--GPFHAVFIRAPAI-----TKV-GGDVEVLAKLDDR--IVAVEQ--GN-VLATAFHPELT 184 (200)
T ss_pred -----cEEEe-Eecccc-C--CcceEEEEccccc-----ccc-CCCeEEEEEECCE--EEEEEE--CC-EEEEEeCCCCC
Confidence 00000 111112 1 1223345566554 334 7899999998876 346653 33 78999999987
Q ss_pred CCCCCchHHHHHHHHHHhc
Q 007533 528 SRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~aa~~ 546 (599)
.. ..+|++|++++.+
T Consensus 185 ~~----~~l~~~f~~~~~~ 199 (200)
T PRK13527 185 DD----TRIHEYFLKKVKG 199 (200)
T ss_pred CC----CHHHHHHHHHHhc
Confidence 54 5899999998865
|
|
| >COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-18 Score=166.90 Aligned_cols=182 Identities=24% Similarity=0.214 Sum_probs=117.5
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcC-CcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG-~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
+|+|+ ++++. ...-|-+.|+..| ..+.+ |....+.+. ....++|||||+||+.+.-.
T Consensus 3 ~ilIl-d~g~q--~~~li~r~~re~g~v~~e~-----~~~~~~~~~--------------~~~~~~~giIlsGgp~sv~~ 60 (198)
T COG0518 3 KILIL-DFGGQ--YLGLIARRLRELGYVYSEI-----VPYTGDAEE--------------LPLDSPDGIIISGGPMSVYD 60 (198)
T ss_pred EEEEE-eCCCc--HhHHHHHHHHHcCCceEEE-----EeCCCCccc--------------ccccCCCEEEEcCCCCCCcc
Confidence 68888 56642 3446778888888 44332 111111110 12346699999999965433
Q ss_pred hH-----HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCce
Q 007533 376 QG-----KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 450 (599)
Q Consensus 376 eg-----~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~ 450 (599)
+. ....|+.+...++|+||||+|||+|+.++|++|..-. ..| +|..
T Consensus 61 ~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~---~~E--------------------------~G~~ 111 (198)
T COG0518 61 EDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGP---KRE--------------------------IGWT 111 (198)
T ss_pred ccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccC---CCc--------------------------cceE
Confidence 33 3444444444455699999999999999999985311 122 3455
Q ss_pred eeEEec-CCchhhhccCCce-eEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcC
Q 007533 451 RTYFQI-KDCKSAKLYGNRT-FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 451 ~v~l~~-~~s~l~~iyg~~~-~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss 528 (599)
++.+.+ ...+++.+.. .. .++..|. +.+.++ +.|++++|.++... ++++++. .+ ++|+|||||++.
T Consensus 112 ~v~~~~~~~~l~~gl~~-~~~~v~~sH~-------D~v~~l-P~g~~vlA~s~~cp-~qa~~~~-~~-~~gvQFHpEv~~ 179 (198)
T COG0518 112 PVELTEGDDPLFAGLPD-LFTTVFMSHG-------DTVVEL-PEGAVVLASSETCP-NQAFRYG-KR-AYGVQFHPEVTH 179 (198)
T ss_pred EEEEecCccccccCCcc-ccCccccchh-------CccccC-CCCCEEEecCCCCh-hhheecC-Cc-EEEEeeeeEEeH
Confidence 666653 2124444432 22 2554444 677777 99999999987776 9999998 55 579999999988
Q ss_pred CCCCchHHHHHHHHH
Q 007533 529 RPGKPSPLFLGLIAA 543 (599)
Q Consensus 529 ~p~~p~pLF~~Fv~a 543 (599)
.....++++|...
T Consensus 180 --~~~~~~l~nf~~~ 192 (198)
T COG0518 180 --EYGEALLENFAHE 192 (198)
T ss_pred --HHHHHHHHHhhhh
Confidence 2366788888753
|
|
| >PRK06490 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=165.89 Aligned_cols=181 Identities=19% Similarity=0.207 Sum_probs=120.2
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
.+++|.++-.|..- .-.++.+.|+..|.++.+. -...++. .| +.+.++||+||+||+++.
T Consensus 6 ~~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~----~~~~~~~-------~p-------~~l~~~dgvii~Ggp~~~ 65 (239)
T PRK06490 6 DKRPVLIVLHQERS--TPGRVGQLLQERGYPLDIR----RPRLGDP-------LP-------DTLEDHAGAVIFGGPMSA 65 (239)
T ss_pred CCceEEEEecCCCC--CChHHHHHHHHCCCceEEE----eccCCCC-------CC-------CcccccCEEEEECCCCCC
Confidence 46789988666522 3446788898888876542 1111110 11 347789999999998764
Q ss_pred c-----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 007533 374 G-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 448 (599)
Q Consensus 374 g-----~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG 448 (599)
. +...+..++.+.+.++|+||||+|||+|+.++|++|...+. |+ ...|
T Consensus 66 ~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~--------------------------G~-~e~G 118 (239)
T PRK06490 66 NDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPD--------------------------GR-VEIG 118 (239)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCC--------------------------CC-Cccc
Confidence 2 34456788888899999999999999999999999854211 10 1223
Q ss_pred ceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcC
Q 007533 449 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 449 ~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss 528 (599)
.+++.+.+....+..+ .. ..+|.|++.+ .+ +.|+.++|.++++. ++++++.++ ++|+|||||++
T Consensus 119 ~~~i~~~~~~~~~~~~---~~--~~~~~H~d~~------~l-P~~~~~LA~s~~~~-~qa~~~~~~--v~g~QfHPE~~- 182 (239)
T PRK06490 119 YYPLRPTEAGRALMHW---PE--MVYHWHREGF------DL-PAGAELLATGDDFP-NQAFRYGDN--AWGLQFHPEVT- 182 (239)
T ss_pred eEEeEECCCcccccCC---CC--EEEEECCccc------cC-CCCCEEEEeCCCCC-eEEEEeCCC--EEEEeeCccCC-
Confidence 3455554432222211 11 2456676542 34 78899999998887 999999764 67999999987
Q ss_pred CCCCchHHHHHHHH
Q 007533 529 RPGKPSPLFLGLIA 542 (599)
Q Consensus 529 ~p~~p~pLF~~Fv~ 542 (599)
..++..|+.
T Consensus 183 -----~~~~~~~i~ 191 (239)
T PRK06490 183 -----RAMMHRWVV 191 (239)
T ss_pred -----HHHHHHHHH
Confidence 355666665
|
|
| >PRK13525 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=161.88 Aligned_cols=179 Identities=17% Similarity=0.213 Sum_probs=114.1
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
++|+|+.- +.+|.|..++|+.+|+.+.. ++.. +.+.++|||++|||++..-
T Consensus 2 m~~~i~~~----~g~~~~~~~~l~~~g~~~~~------~~~~------------------~~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLAL----QGAVREHLAALEALGAEAVE------VRRP------------------EDLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEEc----ccCHHHHHHHHHHCCCEEEE------eCCh------------------hHhccCCEEEECCCChHHHH
Confidence 57888842 33788989999999987643 2210 3577899999999986531
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc---ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcccc
Q 007533 375 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV---LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 447 (599)
Q Consensus 375 ----~eg~i~aik~are~~iP~LGICLGmQll~iefgr~V---lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrL 447 (599)
......+++.+.++++|+||||+|+|+|+.++++.. +|+-++.. .. ...|+. .
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v------------~~------~~~g~~--~ 113 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITV------------RR------NAFGRQ--V 113 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEE------------EE------ccCCCc--e
Confidence 123457788888999999999999999998887631 11111100 00 011221 0
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
|..... .++..+ + .....++.|.++| ..+ ++++.++|.++ +. +++++.. .++|+|||||++
T Consensus 114 g~~~~~-----~~~~~~-~--~~~~~~~~H~d~v-----~~l-p~~~~vlA~~~-~~-~~~~~~~---~~~g~QfHPE~~ 174 (189)
T PRK13525 114 DSFEAE-----LDIKGL-G--EPFPAVFIRAPYI-----EEV-GPGVEVLATVG-GR-IVAVRQG---NILATSFHPELT 174 (189)
T ss_pred eeEEec-----ccccCC-C--CCeEEEEEeCcee-----ecc-CCCcEEEEEcC-CE-EEEEEeC---CEEEEEeCCccC
Confidence 111111 122222 1 1234567777554 345 78899999975 43 6676542 367999999997
Q ss_pred CCCCCchHHHHHHHHHHh
Q 007533 528 SRPGKPSPLFLGLIAAAC 545 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~aa~ 545 (599)
.. ..||++|++.|.
T Consensus 175 ~~----~~~~~~f~~~~~ 188 (189)
T PRK13525 175 DD----TRVHRYFLEMVK 188 (189)
T ss_pred CC----chHHHHHHHHhh
Confidence 64 589999999875
|
|
| >PRK09065 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-18 Score=170.35 Aligned_cols=141 Identities=21% Similarity=0.278 Sum_probs=97.5
Q ss_pred hccCCCEEEeCCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeee
Q 007533 357 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 431 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~r-----g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~ 431 (599)
.+.++|||||+||+.+. ........++.+.+.++|+||||+|||+|+.++|++|..-+.
T Consensus 51 ~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~---------------- 114 (237)
T PRK09065 51 APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPA---------------- 114 (237)
T ss_pred ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCC----------------
Confidence 35789999999998652 235567888999999999999999999999999998842110
Q ss_pred eCCCCCcCcCCCccccCceeeEEecC---CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEE
Q 007533 432 FMPEGSKTHMGGTMRLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEI 508 (599)
Q Consensus 432 ~mpe~~~~~~GgtmrLG~~~v~l~~~---~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~ 508 (599)
|+ ..|.+++.+.+. +.++..+. .. +...+.|+++| ..+ +.|++++|+++++. +++
T Consensus 115 ----------g~--e~G~~~v~~~~~~~~~~l~~~~~-~~--~~v~~~H~d~v-----~~l-p~~~~~la~s~~~~-iqa 172 (237)
T PRK09065 115 ----------GR--ESGTVTVELHPAAADDPLFAGLP-AQ--FPAHLTHLQSV-----LRL-PPGAVVLARSAQDP-HQA 172 (237)
T ss_pred ----------CC--ccceEEEEEccccccChhhhcCC-cc--CcEeeehhhhh-----hhC-CCCCEEEEcCCCCC-eeE
Confidence 11 123455655442 12333322 22 33345566543 345 78999999998887 999
Q ss_pred EEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 509 VELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 509 iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
++++++ ++|+|||||++. ..+..+++.
T Consensus 173 ~~~~~~--i~gvQfHPE~~~------~~~~~~~~~ 199 (237)
T PRK09065 173 FRYGPH--AWGVQFHPEFTA------HIMRAYLRA 199 (237)
T ss_pred EEeCCC--EEEEEeCCcCCH------HHHHHHHHh
Confidence 999864 679999999853 455666554
|
|
| >PRK07053 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=166.72 Aligned_cols=178 Identities=19% Similarity=0.185 Sum_probs=117.6
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC----
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN---- 372 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~---- 372 (599)
+|.++ ..... ..-.++.++|+..|..+.+. .....+... ..+.++|||||+||+..
T Consensus 4 ~ilvi-qh~~~-e~~g~i~~~L~~~g~~~~v~----~~~~~~~~~--------------~~~~~~d~lii~Ggp~~~~d~ 63 (234)
T PRK07053 4 TAVAI-RHVAF-EDLGSFEQVLGARGYRVRYV----DVGVDDLET--------------LDALEPDLLVVLGGPIGVYDD 63 (234)
T ss_pred eEEEE-ECCCC-CCChHHHHHHHHCCCeEEEE----ecCCCccCC--------------CCccCCCEEEECCCCCCCCCC
Confidence 57777 34332 24567899999999776441 112222100 23568999999999753
Q ss_pred ---CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCc
Q 007533 373 ---RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 449 (599)
Q Consensus 373 ---rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~ 449 (599)
+.+...+..++.+.+.++|+||||+|||+|+.++|++|..- . ...+|.
T Consensus 64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~---~--------------------------~~e~G~ 114 (234)
T PRK07053 64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPG---G--------------------------QKEIGW 114 (234)
T ss_pred CcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecC---C--------------------------CCeEeE
Confidence 23456788899999999999999999999999999988420 0 012334
Q ss_pred eeeEEecCC--chhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 450 RRTYFQIKD--CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 450 ~~v~l~~~~--s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
.++.+.+.. ..+..+. ......|.|++.+ .+ +.|.+.+|.++.+. ++++...++ ++|+|||||++
T Consensus 115 ~~i~~t~~g~~~pl~~~~---~~~~~~~~H~d~~------~l-P~ga~~La~s~~~~-~qaf~~g~~--~~g~QfHpE~~ 181 (234)
T PRK07053 115 APLTLTDAGRASPLRHLG---AGTPVLHWHGDTF------DL-PEGATLLASTPACR-HQAFAWGNH--VLALQFHPEAR 181 (234)
T ss_pred EEEEEeccccCChhhcCC---CcceEEEEeCCEE------ec-CCCCEEEEcCCCCC-eeEEEeCCC--EEEEeeCccCC
Confidence 455554421 1222332 2234567777554 24 78999999988776 899998653 67999999987
Q ss_pred CCCCCchHHHHHHHH
Q 007533 528 SRPGKPSPLFLGLIA 542 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~ 542 (599)
.. .+..++.
T Consensus 182 ~~------~~~~w~~ 190 (234)
T PRK07053 182 ED------RFEAWLI 190 (234)
T ss_pred HH------HHHHHHH
Confidence 53 5566554
|
|
| >PRK05665 amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-17 Score=165.52 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=93.5
Q ss_pred hccCCCEEEeCCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeee
Q 007533 357 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 431 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~r-----g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~ 431 (599)
.+.++|||||+||+.+. .+......++.+.++++|+||||+|||+|+.++|++|..-+
T Consensus 54 ~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~----------------- 116 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERAS----------------- 116 (240)
T ss_pred CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCC-----------------
Confidence 46789999999997653 33556778888888999999999999999999999984311
Q ss_pred eCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEe
Q 007533 432 FMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVEL 511 (599)
Q Consensus 432 ~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~ 511 (599)
.|+ ..|.+++.+.+...++..+. ..+...+.|+ +.+..| +.|++++|.++.+. +++++.
T Consensus 117 ---------~G~--e~G~~~~~~~~~~~~~~~~~---~~~~~~~~H~-----D~V~~L-P~ga~~La~s~~~~-~q~~~~ 175 (240)
T PRK05665 117 ---------QGW--GVGIHRYQLAAHAPWMSPAV---TELTLLISHQ-----DQVTAL-PEGATVIASSDFCP-FAAYHI 175 (240)
T ss_pred ---------CCc--ccceEEEEecCCCccccCCC---CceEEEEEcC-----CeeeeC-CCCcEEEEeCCCCc-EEEEEe
Confidence 122 12334444443322222221 2233445565 445566 88999999988877 999998
Q ss_pred CCCCeEEEEcccCCCcCC
Q 007533 512 PNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 512 ~~hpffvGvQFHPE~ss~ 529 (599)
.++ ++|+|||||++..
T Consensus 176 ~~~--~~g~QfHPE~~~~ 191 (240)
T PRK05665 176 GDQ--VLCFQGHPEFVHD 191 (240)
T ss_pred CCC--EEEEecCCcCcHH
Confidence 764 6799999999764
|
|
| >TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=161.83 Aligned_cols=185 Identities=21% Similarity=0.217 Sum_probs=110.0
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|+|| +|+.. +-.++.++|+..|+++.+. ..+ +.++++|+|++||+ |++..
T Consensus 1 ~~~~-~~~~g--n~~~l~~~l~~~g~~v~v~------~~~------------------~~l~~~d~lii~G~-~~~~~~~ 52 (196)
T TIGR01855 1 IVII-DYGVG--NLGSVKRALKRVGAEPVVV------KDS------------------KEAELADKLILPGV-GAFGAAM 52 (196)
T ss_pred CEEE-ecCCc--HHHHHHHHHHHCCCcEEEE------cCH------------------HHhccCCEEEECCC-CCHHHHH
Confidence 5778 68754 6779999999999876542 211 34678999999883 33221
Q ss_pred ---hHH-HHHH-HHHHHcCCCEEEEehhHHHHHHHh--cccc--ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccc
Q 007533 376 ---QGK-ILAA-KYAREHRIPYLGICLGMQVAVIEF--ARSV--LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 446 (599)
Q Consensus 376 ---eg~-i~ai-k~are~~iP~LGICLGmQll~ief--gr~V--lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtmr 446 (599)
... +..+ +.+.+.++|+||||+|||+|+.++ ++++ +|+-++. +..++....+++|++
T Consensus 53 ~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~------------v~~~~~~~~~~~g~~-- 118 (196)
T TIGR01855 53 ARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGN------------VVKLEARKVPHMGWN-- 118 (196)
T ss_pred HHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEE------------EEECCCCCCCcccCe--
Confidence 111 3344 777788999999999999998763 1111 1111111 111111122445553
Q ss_pred cCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCC
Q 007533 447 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEY 526 (599)
Q Consensus 447 LG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ 526 (599)
.+.....++++..+. + ....+++|+|++.+.. +. +++.++++..+.+ .....+ ++|+|||||+
T Consensus 119 ----~~~~~~~~~l~~~l~-~--~~~v~~~Hs~~v~~~~-------~~-~~a~~~~g~~~~~-~~~~~~-i~GvQFHPE~ 181 (196)
T TIGR01855 119 ----EVHPVKESPLLNGID-E--GAYFYFVHSYYAVCEE-------EA-VLAYADYGEKFPA-AVQKGN-IFGTQFHPEK 181 (196)
T ss_pred ----eeeeCCCChHHhCCC-C--CCEEEEECeeEecCCC-------Cc-EEEEEcCCcEEEE-EEecCC-EEEEECCCcc
Confidence 222233324444443 2 2345788999986421 22 5566666663443 444556 6799999997
Q ss_pred cCCCCCchHHHHHHHHH
Q 007533 527 KSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 527 ss~p~~p~pLF~~Fv~a 543 (599)
+. .....++++|+++
T Consensus 182 ~~--~~g~~ll~~f~~~ 196 (196)
T TIGR01855 182 SG--KTGLKLLENFLEL 196 (196)
T ss_pred Cc--HhHHHHHHHHHhC
Confidence 74 3578899999863
|
This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-17 Score=181.15 Aligned_cols=200 Identities=18% Similarity=0.214 Sum_probs=126.5
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
...+|+++ ||+.. +-.|+.++|+..|+++. |+... +.+.++|+||+|||....
T Consensus 5 ~~~~i~ii-DyG~G--N~~sl~~al~~~G~~v~------~v~~~------------------~~l~~~D~lIlpG~gs~~ 57 (538)
T PLN02617 5 ADSEVTLL-DYGAG--NVRSVRNAIRHLGFTIK------DVQTP------------------EDILNADRLIFPGVGAFG 57 (538)
T ss_pred CCCeEEEE-ECCCC--CHHHHHHHHHHCCCeEE------EECCh------------------hhhccCCEEEECCCCCHH
Confidence 35689999 69855 78899999999998763 33321 357899999999953221
Q ss_pred c-h-----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc--ccc--ccccCCCccccCCCCCCCeeeeCCCCCcCcCCC
Q 007533 374 G-V-----QGKILAAKYAREHRIPYLGICLGMQVAVIEFA--RSV--LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 443 (599)
Q Consensus 374 g-~-----eg~i~aik~are~~iP~LGICLGmQll~iefg--r~V--lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Gg 443 (599)
. . .+....++.+.+.++|+||||+|||+|+..+. +.+ +|+-+.....+... ++...+|+||
T Consensus 58 ~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~---------~~~~vp~iGw 128 (538)
T PLN02617 58 SAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSS---------NGLRVPHIGW 128 (538)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCcc---------CCCCCCeecc
Confidence 1 1 24567888888899999999999999987641 112 22222211122100 0124578888
Q ss_pred ccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCC-CeEEEEEeCCCCeEEEEcc
Q 007533 444 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS-QRMEIVELPNHPYFIGVQF 522 (599)
Q Consensus 444 tmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg-~~vE~iE~~~hpffvGvQF 522 (599)
+ ++...++++++..+ + .. ..+|.|+|.+.+.. ..+..+.+.+..+ ..+++++.. +++|+||
T Consensus 129 ~------~V~~~~~spL~~~l-~-~~--~vy~vHSy~v~~~p-----~~~~~v~a~~~~g~~~IaAI~~g---nI~GVQF 190 (538)
T PLN02617 129 N------ALQITKDSELLDGV-G-GR--HVYFVHSYRATPSD-----ENKDWVLATCNYGGEFIASVRKG---NVHAVQF 190 (538)
T ss_pred e------EEEecCCChhHhcC-C-Cc--EEEEEeEEEEEecC-----CCCcEEEEEEccCCCcEEEEEeC---CEEEEEc
Confidence 4 34444443455455 2 22 34678999864311 2233344554432 348899864 3789999
Q ss_pred cCCCcCCCCCchHHHHHHHHHHhcchh
Q 007533 523 HPEYKSRPGKPSPLFLGLIAAACGQLD 549 (599)
Q Consensus 523 HPE~ss~p~~p~pLF~~Fv~aa~~~~~ 549 (599)
|||++.. ....+|++|++.....+.
T Consensus 191 HPE~s~~--~G~~L~~nFl~~~~~~~~ 215 (538)
T PLN02617 191 HPEKSGA--TGLSILRRFLEPKSSATQ 215 (538)
T ss_pred CCccCch--hHHHHHHHHHHhhhhhhc
Confidence 9999862 467899999988875443
|
|
| >PRK07567 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=165.90 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=91.1
Q ss_pred hccCCCEEEeCCCCCCCch------h-------HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCC
Q 007533 357 LLKGADGILVPGGFGNRGV------Q-------GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 423 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~rg~------e-------g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~ 423 (599)
.++++|||||+||+++... . ....+++++.++++|+||||+|||+|+.++|++|.. . .
T Consensus 48 ~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~--~------ 118 (242)
T PRK07567 48 DLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-T--Y------ 118 (242)
T ss_pred CHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-C--C------
Confidence 4678999999999865321 1 123567777789999999999999999999998843 1 0
Q ss_pred CCCCCeeeeCCCCCcCcCCCccccCceeeEEecC---CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEe
Q 007533 424 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKD 500 (599)
Q Consensus 424 ~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~---~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s 500 (599)
|+ ..|.+++.+.+. +.++..+. ..+...|.|++.| ..+ +.|++++|.+
T Consensus 119 ------------------g~--e~G~~~v~l~~~g~~~~l~~~~~---~~~~~~~~H~d~V-----~~l-p~~~~vlA~s 169 (242)
T PRK07567 119 ------------------GE--PVGAVTVSLTDAGRADPLLAGLP---DTFTAFVGHKEAV-----SAL-PPGAVLLATS 169 (242)
T ss_pred ------------------CC--cCccEEEEECCccCCChhhcCCC---CceEEEeehhhhh-----hhC-CCCCEEEEeC
Confidence 11 123455655442 12333332 2234456676544 445 8899999999
Q ss_pred CCCCeEEEEEeCCCCeEEEEcccCCCcCC
Q 007533 501 ETSQRMEIVELPNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 501 ~dg~~vE~iE~~~hpffvGvQFHPE~ss~ 529 (599)
+++. ++++++.++ ++|+|||||++..
T Consensus 170 ~~~~-vqa~~~~~~--~~gvQfHPE~~~~ 195 (242)
T PRK07567 170 PTCP-VQMFRVGEN--VYATQFHPELDAD 195 (242)
T ss_pred CCCC-EEEEEeCCC--EEEEEeCCcCCHH
Confidence 8776 999998764 6799999999653
|
|
| >TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=158.79 Aligned_cols=192 Identities=24% Similarity=0.356 Sum_probs=120.6
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC--
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-- 373 (599)
+||+|+ +|... ..-.++.++|+.+|+.+.. .|.... .+.++|+|+||||+...
T Consensus 1 ~~v~Vl-~~~G~-n~~~~~~~al~~~G~~~~~----i~~~~~-------------------~l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 1 MKVAVI-RFPGT-NCDRDTVYALRLLGVDAEI----VWYEDG-------------------SLPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred CeEEEE-eCCCc-CcHHHHHHHHHHCCCeEEE----EecCCC-------------------CCCCCCEEEECCCCccccc
Confidence 479999 56432 1346788999999987643 243221 25689999999997431
Q ss_pred -------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 374 -------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 374 -------g~eg~i~aik~are~~iP~LGICLGmQll~ie--fgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
........++.+.+.++|+||||.|+|+|+.+ +.+.+. ...+.+|
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~---~n~~~~~----------------------- 109 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALL---PNDSLRF----------------------- 109 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCcee---ecCCCce-----------------------
Confidence 01335677888888999999999999999763 222221 0011111
Q ss_pred cccCcee--eEEecCCchhhhccCCceeEEe--eee-eeeeeCchhhhhhccCCeEEEEE-e----------CCCC--eE
Q 007533 445 MRLGSRR--TYFQIKDCKSAKLYGNRTFIDE--RHR-HRYEVNPDMIARLENAGLSFTGK-D----------ETSQ--RM 506 (599)
Q Consensus 445 mrLG~~~--v~l~~~~s~l~~iyg~~~~I~e--rHr-HrYeVnp~~v~~le~~Gl~~sa~-s----------~dg~--~v 506 (599)
+... +.+.++.+.+.+-+.....+.. .|. |||.++++.+++|++.+..+.-. + ++|. .|
T Consensus 110 ---~~~~~~~~v~~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i 186 (227)
T TIGR01737 110 ---ICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNI 186 (227)
T ss_pred ---EEEeEEEEECCCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHH
Confidence 1111 2222221333222221122222 344 59999999888897887644333 3 5552 38
Q ss_pred EEEEeCCCCeEEEEcccCCCcC----CCCCchHHHHHHHH
Q 007533 507 EIVELPNHPYFIGVQFHPEYKS----RPGKPSPLFLGLIA 542 (599)
Q Consensus 507 E~iE~~~hpffvGvQFHPE~ss----~p~~p~pLF~~Fv~ 542 (599)
+++.+++.+. +|+|||||... .+.++..+|++|++
T Consensus 187 ~~i~~~~~~~-~g~~~HpE~~~~~~~~~~~g~~~~~~~~~ 225 (227)
T TIGR01737 187 AGIVNERGNV-LGMMPHPERASEKLLGGDDGLKLFESLVE 225 (227)
T ss_pred cccCCCCCCE-EEEecCchhhcccccCCcccHHHHHHHHh
Confidence 8899999995 59999999984 33467899999975
|
In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea. |
| >TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=154.44 Aligned_cols=175 Identities=20% Similarity=0.265 Sum_probs=106.6
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC---
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--- 373 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r--- 373 (599)
||+++. ++.+|.|..++|+++|+++.. +.+. +.++++|+|++|||++..
T Consensus 1 ~igvl~----~qg~~~e~~~~l~~~g~~~~~------v~~~------------------~~l~~~d~liipGG~~~~~~~ 52 (184)
T TIGR03800 1 KIGVLA----LQGAVREHARALEALGVEGVE------VKRP------------------EQLDEIDGLIIPGGESTTLSR 52 (184)
T ss_pred CEEEEE----ccCCHHHHHHHHHHCCCEEEE------ECCh------------------HHhccCCEEEECCCCHHHHHH
Confidence 467663 445889999999999986643 3321 357899999999998663
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc---ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 007533 374 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV---LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 448 (599)
Q Consensus 374 --g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~V---lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG 448 (599)
...+....++.+.++++|+||||+|||+|+-++.... +|+-++.. .. ...|+ ..+
T Consensus 53 l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v------------~~------~~~g~--~~~ 112 (184)
T TIGR03800 53 LLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTV------------ER------NAYGR--QVD 112 (184)
T ss_pred HHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEE------------Ee------eccCC--ccc
Confidence 1234567788888999999999999999987762110 11111100 00 00111 112
Q ss_pred ceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcC
Q 007533 449 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 449 ~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss 528 (599)
...+.+... .+ + ......-..|. +++..+ +.+++++|++++ . +++++.. + ++|+|||||++.
T Consensus 113 s~~~~l~~~-----~~-~-~~~~~~~~~h~-----~~v~~l-p~~~~vla~~~~-~-~~a~~~~--~-~~gvQfHPE~~~ 174 (184)
T TIGR03800 113 SFEAEVDIK-----GV-G-DDPITGVFIRA-----PKIVSV-GNGVEILAKVGN-R-IVAVRQG--N-ILVSSFHPELTD 174 (184)
T ss_pred cEEEEeecc-----cC-C-CCcceEEEEcC-----CCcccC-CCCeEEEEEeCC-e-eEEEEeC--C-EEEEEeCCccCC
Confidence 222222211 00 0 00011112232 556666 889999999654 4 7788644 3 679999999974
Q ss_pred CCCCchHHHHHHH
Q 007533 529 RPGKPSPLFLGLI 541 (599)
Q Consensus 529 ~p~~p~pLF~~Fv 541 (599)
. .++|+.|+
T Consensus 175 ~----~~~~~~f~ 183 (184)
T TIGR03800 175 D----HRVHEYFL 183 (184)
T ss_pred C----chHHHHhh
Confidence 3 37888887
|
Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase. |
| >KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=169.20 Aligned_cols=196 Identities=23% Similarity=0.276 Sum_probs=125.5
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHc-CCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccC---CCEEEeCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG---ADGILVPG 368 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~ha-G~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~---~DGIlVPG 368 (599)
.++++.+++.|. +|. ++.++|..+ +..+.+.+...|+.+ ++|+.+.+ +|+|+|.+
T Consensus 13 ~rl~~LlID~YD----SyTfNiy~ll~~~~~vp~V~~vh~~~~~~----------------d~~~~l~q~~~FDaIVVgP 72 (767)
T KOG1224|consen 13 PRLRTLLIDNYD----SYTFNIYQLLSTINGVPPVVIVHDEWTWE----------------DAYHYLYQDVAFDAIVVGP 72 (767)
T ss_pred hheeEEEEeccc----chhhhHHHHHHHhcCCCcEEEEeccccCH----------------HHHHHHhhccccceEEecC
Confidence 458999999887 555 788888776 455544444445432 24455444 99999999
Q ss_pred CCCCCchhHHHHHHHHHHH--cCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccc
Q 007533 369 GFGNRGVQGKILAAKYARE--HRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 446 (599)
Q Consensus 369 GfG~rg~eg~i~aik~are--~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtmr 446 (599)
|||.|.-..-+..+....+ +.+|+||||||||.|+.+.|+.|.- +| + +..|.
T Consensus 73 GPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~---~n-------~-------------p~HGr--- 126 (767)
T KOG1224|consen 73 GPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVH---AN-------E-------------PVHGR--- 126 (767)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceec---CC-------C-------------cccce---
Confidence 9999933222222222222 2599999999999999998887731 11 0 11121
Q ss_pred cCceeeEEecCCchhhhccCCc--eeEEeeeeeeeeeCchhhhhhccCCeEEEEEe--CCCCeEEEEEeCCCCeEEEEcc
Q 007533 447 LGSRRTYFQIKDCKSAKLYGNR--TFIDERHRHRYEVNPDMIARLENAGLSFTGKD--ETSQRMEIVELPNHPYFIGVQF 522 (599)
Q Consensus 447 LG~~~v~l~~~~s~l~~iyg~~--~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s--~dg~~vE~iE~~~hpffvGvQF 522 (599)
...+.. +++-++.++..+. ..-..|+ |+..+|+.-++.+ .+..+. ++|-.++.+.+++.||| |+||
T Consensus 127 --vs~i~~-~~~~~f~gi~sg~~~~fK~~RY-HSL~in~~pid~l-----~il~t~~ddng~ilMsi~~~~fPhf-G~qy 196 (767)
T KOG1224|consen 127 --VSGIEH-DGNILFSGIPSGRNSDFKVVRY-HSLIINSLPIDLL-----PILWTIYDDNGHILMSIMHSSFPHF-GLQY 196 (767)
T ss_pred --eeeEEe-cCcEEEccCCCCCcccceeEEe-EEEEecCCchhhh-----cceeEeecCCceEEEEeeccCCCcc-ceee
Confidence 011111 1112333343221 1122566 8999998766654 234443 45558999999999997 9999
Q ss_pred cCCCcCCCCCchHHHHHHHHHHhc
Q 007533 523 HPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 523 HPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
|||.-... .+..||++|++.+..
T Consensus 197 HPES~~s~-~g~~lfkNFl~lt~~ 219 (767)
T KOG1224|consen 197 HPESIAST-YGSQLFKNFLDLTVN 219 (767)
T ss_pred ChHHhhhh-hhHHHHHHHHHhhcc
Confidence 99987665 478999999998854
|
|
| >KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-16 Score=146.37 Aligned_cols=197 Identities=18% Similarity=0.269 Sum_probs=129.1
Q ss_pred EEEEEeecCCCcchHHHHHHHH-HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 297 RIAMVGKYTGLSDAYLSILKAL-LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL-~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
-|.+++.|.++. .++.+.| -..|+...+ . ..++++-+. -.-.+++++++++|||.+..
T Consensus 20 piv~IDNYDSFT---~Nv~qYL~~e~g~~~~V----y--RNDeiTV~E------------l~~~NP~~LliSPGPG~P~D 78 (223)
T KOG0026|consen 20 PIIVIDNYDSFT---YNLCQYLMGELGCHFEV----Y--RNDELTVEE------------LKRKNPRGLLISPGPGTPQD 78 (223)
T ss_pred CEEEEecccchh---HHHHHHhhhccCccEEE----E--ecCcccHHH------------HhhcCCCeEEecCCCCCCcc
Confidence 488888998652 3677777 444555433 1 223332111 12468999999999999986
Q ss_pred hHH-HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 376 QGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 eg~-i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.|. ..++++. .-++|+||||+|.|++.-+||++|.. .-|. ++ | |-+ .++..
T Consensus 79 sGIs~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~------a~~~------i~---------H-GK~-----S~i~~ 130 (223)
T KOG0026|consen 79 SGISLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVR------SPFG------VM---------H-GKS-----SMVHY 130 (223)
T ss_pred ccchHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEec------cCcc------ee---------e-ccc-----ccccc
Confidence 553 3455554 35899999999999999999998842 1110 00 0 100 01111
Q ss_pred ec-C-CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCC
Q 007533 455 QI-K-DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK 532 (599)
Q Consensus 455 ~~-~-~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~ 532 (599)
.. + ..+++.+. +..+..|+ |+.....+.++ ..-|.++++.++|- +++.+|+.+..+-|||||||.--.. .
T Consensus 131 D~~~~~G~f~g~~--q~~~V~RY-HSLa~~~sSlP---~d~L~VTawTEnG~-iMgaRHkKY~~ieGVQfHPESIlte-e 202 (223)
T KOG0026|consen 131 DEKGEEGLFSGLS--NPFIVGRY-HSLVIEKDSFP---SDELEVTAWTEDGL-VMAARHRKYKHIQGVQFHPESIITT-E 202 (223)
T ss_pred CCccccccccCCC--CCeEEEee-eeeeeecccCC---ccceeeeEeccCcE-EEeeeccccccccceeecchhhhhh-h
Confidence 10 0 02333343 33445676 88776655443 35789999999997 9999999998888999999976554 4
Q ss_pred chHHHHHHHHHHhcchhh
Q 007533 533 PSPLFLGLIAAACGQLDT 550 (599)
Q Consensus 533 p~pLF~~Fv~aa~~~~~~ 550 (599)
++-+.++|++...+...+
T Consensus 203 Gk~~irNflni~~~tWeE 220 (223)
T KOG0026|consen 203 GKTIVRNFIKIVEKKWSE 220 (223)
T ss_pred hHHHHHHHHHhcccchhc
Confidence 788999999988876554
|
|
| >PRK08250 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-15 Score=151.04 Aligned_cols=139 Identities=19% Similarity=0.168 Sum_probs=94.5
Q ss_pred hccCCCEEEeCCCCCCCc--------h--hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCC
Q 007533 357 LLKGADGILVPGGFGNRG--------V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTK 426 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~rg--------~--eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~ 426 (599)
.+.++|||||+||+.... . ......++.+.++++|+||||+|+|+++.++|++|..-+.
T Consensus 42 ~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~----------- 110 (235)
T PRK08250 42 NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPE----------- 110 (235)
T ss_pred CccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCC-----------
Confidence 357899999999976521 1 2446778888899999999999999999999999842110
Q ss_pred CCeeeeCCCCCcCcCCCccccCceeeEEecCC---chhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCC
Q 007533 427 NPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKD---CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS 503 (599)
Q Consensus 427 ~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~---s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg 503 (599)
... |.+++.+.+.. .++..+. ....+ .|.|+..+ .+ +.|++++|.++.+
T Consensus 111 ------------~e~------G~~~v~lt~~g~~d~l~~~~~-~~~~v--~~~H~d~~------~l-P~~a~~LA~s~~~ 162 (235)
T PRK08250 111 ------------KEI------GYFPITLTEAGLKDPLLSHFG-STLTV--GHWHNDMP------GL-TDQAKVLATSEGC 162 (235)
T ss_pred ------------Cce------eEEEEEEccccccCchhhcCC-CCcEE--EEEeccee------cC-CCCCEEEECCCCC
Confidence 122 33455554421 2333332 23333 45565432 34 8899999998777
Q ss_pred CeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 504 QRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 504 ~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
. ++++...++ ++|+|||||++. ..+..+++.
T Consensus 163 ~-~qa~~~~~~--~~g~QfHPE~~~------~~~~~~~~~ 193 (235)
T PRK08250 163 P-RQIVQYSNL--VYGFQCHMEFTV------EAVELLIAH 193 (235)
T ss_pred C-ceEEEeCCC--EEEEeecCcCCH------HHHHHHHHh
Confidence 6 999998765 679999999864 355555553
|
|
| >cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=141.24 Aligned_cols=167 Identities=19% Similarity=0.326 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-----chhHHHHHHH
Q 007533 309 DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAK 383 (599)
Q Consensus 309 DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-----g~eg~i~aik 383 (599)
.++.+..++|+..|+++.. +... +.+.++|||++|||+... ........++
T Consensus 8 g~~~e~~~~l~~~g~~v~~------v~~~------------------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~ 63 (183)
T cd01749 8 GDFREHIRALERLGVEVIE------VRTP------------------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLR 63 (183)
T ss_pred CCcHHHHHHHHHCCCeEEE------ECCH------------------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHH
Confidence 3556667999999987643 3321 347889999999986431 1134567788
Q ss_pred HHHHcCCCEEEEehhHHHHHHHhccc----cccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCc
Q 007533 384 YAREHRIPYLGICLGMQVAVIEFARS----VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDC 459 (599)
Q Consensus 384 ~are~~iP~LGICLGmQll~iefgr~----Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s 459 (599)
.+.++++|+||||+|||+|+.+++.. -+|+-+.. +. ....|+. .|.....+..
T Consensus 64 ~~~~~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~------------v~------~~~~g~~--~g~~~~~l~~--- 120 (183)
T cd01749 64 EFIRAGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDIT------------VR------RNAFGRQ--VDSFEADLDI--- 120 (183)
T ss_pred HHHHcCCeEEEECHHHHHHHHHhcccCCCCccCceeEE------------EE------eeccccc--cceEEEcCCC---
Confidence 88889999999999999999888753 11111110 00 0011211 1111111111
Q ss_pred hhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHH
Q 007533 460 KSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLG 539 (599)
Q Consensus 460 ~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~ 539 (599)
..+ + .......+.|. +.+..+ +.+++++|.++ +. +++++.. + ++|+|||||++.. ..+|+.
T Consensus 121 --~~~-~-~~~~~~~~~h~-----~~v~~~-p~~~~~la~~~-~~-~~a~~~~--~-~~g~qfHPE~~~~----~~~~~~ 181 (183)
T cd01749 121 --PGL-G-LGPFPAVFIRA-----PVIEEV-GPGVEVLAEYD-GK-IVAVRQG--N-VLATSFHPELTDD----TRIHEY 181 (183)
T ss_pred --CcC-C-CCccEEEEEEC-----cEEEEc-CCCcEEEEecC-CE-EEEEEEC--C-EEEEEcCCccCCC----cchhhh
Confidence 011 0 11122334454 334444 77999999975 44 5677754 3 6799999999854 367777
Q ss_pred HH
Q 007533 540 LI 541 (599)
Q Consensus 540 Fv 541 (599)
|+
T Consensus 182 f~ 183 (183)
T cd01749 182 FL 183 (183)
T ss_pred hC
Confidence 64
|
Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6. |
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=149.03 Aligned_cols=190 Identities=22% Similarity=0.310 Sum_probs=123.5
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCC-C-CCCC--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR-- 373 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPG-G-fG~r-- 373 (599)
+-++ +|+.. +..|+.+||+|.|+.+.. +.+ | .++.++|-+|+|| | ||..
T Consensus 4 v~~l-d~~ag--n~~si~nal~hlg~~i~~------v~~-----------P-------~DI~~a~rLIfPGVGnfg~~~D 56 (541)
T KOG0623|consen 4 VTLL-DYGAG--NVRSIRNALRHLGFSIKD------VQT-----------P-------GDILNADRLIFPGVGNFGPAMD 56 (541)
T ss_pred EEEE-ecCCc--cHHHHHHHHHhcCceeee------ccC-----------c-------hhhccCceEeecCcccchHHHH
Confidence 4556 68754 789999999999998743 222 2 4578999999999 3 5542
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc-------ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 374 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV-------LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 374 --g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~V-------lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
.-.|+.+.++...++++|++|||+|+|+| |.+.+ +|..+.-...||.. +..++|+||+
T Consensus 57 ~L~~~Gf~eplr~YiesgkPfmgicvGlQaL---F~gSvE~p~skGLgvipg~v~RFD~s----------~k~VPhIGWN 123 (541)
T KOG0623|consen 57 VLNRTGFAEPLRKYIESGKPFMGICVGLQAL---FDGSVENPPSKGLGVIPGIVGRFDAS----------AKIVPHIGWN 123 (541)
T ss_pred HHhhhhhHHHHHHHHhcCCCeEeehhhHHHH---hcccccCCCcCcccccccceecccCC----------CCcCCccccc
Confidence 23678889999999999999999999998 34433 11111112222221 1347899996
Q ss_pred cccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccC
Q 007533 445 MRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHP 524 (599)
Q Consensus 445 mrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHP 524 (599)
- |.+..+ +.+... ...-..++.|+| .|++--..+++.++++ ++...|. -+.|.......+.++||||
T Consensus 124 s------c~v~sd-~effg~---~p~~~~YFVHSy-l~~ek~~~len~~wki-at~kYG~-E~Fi~ai~knN~~AtQFHP 190 (541)
T KOG0623|consen 124 S------CQVGSD-SEFFGD---VPNRHVYFVHSY-LNREKPKSLENKDWKI-ATCKYGS-ESFISAIRKNNVHATQFHP 190 (541)
T ss_pred c------cccCCc-cccccc---CCCceEEEEeee-cccccccCCCCCCceE-eeeccCc-HHHHHHHhcCceeeEeccc
Confidence 2 333333 333322 222245788999 5666555677888876 4445554 2333333344577999999
Q ss_pred CCcCCCCCchHHHHHHHH
Q 007533 525 EYKSRPGKPSPLFLGLIA 542 (599)
Q Consensus 525 E~ss~p~~p~pLF~~Fv~ 542 (599)
|++... +....++|+.
T Consensus 191 EKSG~a--GL~vl~~FL~ 206 (541)
T KOG0623|consen 191 EKSGEA--GLSVLRRFLH 206 (541)
T ss_pred ccccch--hHHHHHHHHh
Confidence 998875 5678888887
|
|
| >PRK13526 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=126.63 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=60.1
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
+||+++.=++ +.....+||++.|+++.+ +.. | +.++++|+|++|||+++..
T Consensus 3 ~~igVLalqG----~~~Eh~~al~~lG~~v~~------v~~-----------~-------~~l~~~D~LILPGG~~t~~~ 54 (179)
T PRK13526 3 QKVGVLAIQG----GYQKHADMFKSLGVEVKL------VKF-----------N-------NDFDSIDRLVIPGGESTTLL 54 (179)
T ss_pred cEEEEEECCc----cHHHHHHHHHHcCCcEEE------ECC-----------H-------HHHhCCCEEEECCChHHHHH
Confidence 7899995444 677789999999987432 221 1 4578999999999976641
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 375 ----VQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 375 ----~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..++..+++...+ ++|+||||+|||+|+-
T Consensus 55 ~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~ 87 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSK 87 (179)
T ss_pred HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHc
Confidence 1456778887665 6799999999999964
|
|
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-11 Score=133.95 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=66.0
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 373 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r- 373 (599)
.++|||+ +.-.+.-.|..-+++|+..|+++ .|++.-+ + +.+.++|+|++|||+...
T Consensus 245 ~~~iava-~d~af~f~y~e~~~~L~~~g~~~------~~~~~~~--~--------------~~l~~~D~lilpGG~~~~~ 301 (451)
T PRK01077 245 GVRIAVA-RDAAFNFYYPENLELLRAAGAEL------VFFSPLA--D--------------EALPDCDGLYLGGGYPELF 301 (451)
T ss_pred CceEEEE-ecCcccccHHHHHHHHHHCCCEE------EEeCCcC--C--------------CCCCCCCEEEeCCCchhhH
Confidence 4799999 55555556778889999887654 4565311 0 235689999999997532
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 374 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 374 -----g~eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
...++...++.+.++++|++|||-|+|+|+-.+
T Consensus 302 ~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 302 AAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 124578889999999999999999999997654
|
|
| >PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=126.69 Aligned_cols=212 Identities=21% Similarity=0.252 Sum_probs=124.9
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC--C
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--N 372 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG--~ 372 (599)
++||||+ .+.... .=.+..++|+++|+.+.. .|+. ++.+. + ..++++|+|++||||+ +
T Consensus 3 ~~kvaVl-~~pG~n-~d~e~~~Al~~aG~~v~~----v~~~--~~~~~-----~-------~~l~~~DgLvipGGfs~gD 62 (261)
T PRK01175 3 SIRVAVL-RMEGTN-CEDETVKAFRRLGVEPEY----VHIN--DLAAE-----R-------KSVSDYDCLVIPGGFSAGD 62 (261)
T ss_pred CCEEEEE-eCCCCC-CHHHHHHHHHHCCCcEEE----Eeec--ccccc-----c-------cchhhCCEEEECCCCCccc
Confidence 4789999 453332 224778999999988633 3432 22110 0 2478999999999974 3
Q ss_pred Cc---------h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCC
Q 007533 373 RG---------V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 442 (599)
Q Consensus 373 rg---------~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~G 442 (599)
.- . ..+..+++.+.++++|+||||+|+|+|+- .| ++ +.. .... . .+.+.++....
T Consensus 63 ~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~-~G--lL--pg~--~~~~-~--~~~~~L~~N~s----- 127 (261)
T PRK01175 63 YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVE-LG--LL--PGF--DEIA-E--KPEMALTVNES----- 127 (261)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHH-CC--CC--CCC--Cccc-c--CCcceEeecCC-----
Confidence 21 1 11336788889999999999999999964 22 22 110 0000 0 01112222211
Q ss_pred CccccCce--eeEEecCCchhhhccCCc-eeEEeeeee-eee-eCchhhhhhccCCeEEEEE------------eCCCCe
Q 007533 443 GTMRLGSR--RTYFQIKDCKSAKLYGNR-TFIDERHRH-RYE-VNPDMIARLENAGLSFTGK------------DETSQR 505 (599)
Q Consensus 443 gtmrLG~~--~v~l~~~~s~l~~iyg~~-~~I~erHrH-rYe-Vnp~~v~~le~~Gl~~sa~------------s~dg~~ 505 (599)
+ |+=.+ .+.+....|.+-.-+.+. -.+...|.- ||. .+++.+++|++.|..+.-+ +++|..
T Consensus 128 ~--~f~~~~~~~~v~~~~s~~~~~~~~~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~ 205 (261)
T PRK01175 128 N--RFECRPTYLKKENRKCIFTKLLKKDVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSI 205 (261)
T ss_pred C--CeEEeeeEEEECCCCChhHhccCCCEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCCh
Confidence 1 11111 122222223333333222 123334543 566 5777778888888776655 455652
Q ss_pred --EEEEEeCCCCeEEEEcccCCCcCCCC------------CchHHHHHHHHHH
Q 007533 506 --MEIVELPNHPYFIGVQFHPEYKSRPG------------KPSPLFLGLIAAA 544 (599)
Q Consensus 506 --vE~iE~~~hpffvGvQFHPE~ss~p~------------~p~pLF~~Fv~aa 544 (599)
|.+|-.++.. ++|...|||....|. ++..+|+++++..
T Consensus 206 ~~IAGi~~~~G~-vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~ 257 (261)
T PRK01175 206 YNIAGITNEKGN-VIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYL 257 (261)
T ss_pred hhcceeECCCCC-EEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHH
Confidence 7888888877 579999999998877 7788999987644
|
|
| >KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.8e-13 Score=140.49 Aligned_cols=154 Identities=21% Similarity=0.269 Sum_probs=101.5
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCc
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 438 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~ 438 (599)
.++-||+++|||-+--.+..-..=-...+-++|+||||.|||+|+-.+|+.|.+ ....|
T Consensus 58 ~~~rgiIiSGGP~SVya~dAP~~dp~if~~~vpvLGICYGmQ~i~~~~Gg~V~~---~~~RE------------------ 116 (552)
T KOG1622|consen 58 YGPRGIIISGGPNSVYAEDAPSFDPAIFELGVPVLGICYGMQLINKLNGGTVVK---GMVRE------------------ 116 (552)
T ss_pred CCceEEEEeCCCCccccCcCCCCChhHhccCCcceeehhHHHHHHHHhCCcccc---ccccC------------------
Confidence 588999999998663211100000112344799999999999999999999853 11111
Q ss_pred CcCCCccccCceeeEEecCCchhhhccCCcee--EEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCe
Q 007533 439 THMGGTMRLGSRRTYFQIKDCKSAKLYGNRTF--IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPY 516 (599)
Q Consensus 439 ~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~--I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpf 516 (599)
.|...+...+...++.++.+ ... ++..|- +.+.++ ..|+++.|++.+.. +.++.....+
T Consensus 117 --------~G~~eI~v~~~~~lF~~~~~-~~~~~VlltHg-------dsl~~v-~~g~kv~a~s~n~~-va~i~~e~kk- 177 (552)
T KOG1622|consen 117 --------DGEDEIEVDDSVDLFSGLHK-TEFMTVLLTHG-------DSLSKV-PEGFKVVAFSGNKP-VAGILNELKK- 177 (552)
T ss_pred --------CCCceEEcCchhhhhhhhcc-cceeeeeeccc-------cchhhc-cccceeEEeecCcc-eeeehhhhhh-
Confidence 12233333333234555543 222 555554 667676 78899999986654 7788888888
Q ss_pred EEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhhc
Q 007533 517 FIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQ 553 (599)
Q Consensus 517 fvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~~ 553 (599)
++|+|||||....+. ...++.+|+-..+++...|..
T Consensus 178 iyglqfhpEV~~t~~-g~~ll~nFl~~vc~~~~n~tm 213 (552)
T KOG1622|consen 178 IYGLQFHPEVTLTPN-GKELLKNFLFDVCGCSGNFTM 213 (552)
T ss_pred hhcCCCCCcccccCc-hhHHHHHHHHHHcCCccCcch
Confidence 569999999999884 678999999766666555543
|
|
| >PRK05368 homoserine O-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-11 Score=125.91 Aligned_cols=208 Identities=15% Similarity=0.149 Sum_probs=120.3
Q ss_pred CceEEEEEeecCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCcc-ccCCchhhhHHHHhc--cCCCEEEeCCC
Q 007533 294 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-EKENPDAYKAAWKLL--KGADGILVPGG 369 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~-DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~-~~~~p~~y~~a~~~L--~~~DGIlVPGG 369 (599)
..++|+|+. --..+ +.=..+.+.|..... .+++.|+....-...+ ..+..++|..-++.+ ..+||+||+|.
T Consensus 34 rpl~i~ilN-lMp~k~~TE~q~~rll~~~~~----qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGA 108 (302)
T PRK05368 34 RPLKILILN-LMPKKIETETQFLRLLGNTPL----QVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGA 108 (302)
T ss_pred CCccEEEEe-CCCCCchHHHHHHHHhcCCCc----eEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCC
Confidence 358999993 33221 233466676643322 2345555443322211 111122222223333 58999999998
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCC
Q 007533 370 FGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 442 (599)
Q Consensus 370 fG~-------rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~G 442 (599)
+-. +-++.+...++|++++.+|+||||.|+|+++.++++-. +.. . +..+
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~-k~~------~-----------------~~K~ 164 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIP-KYT------L-----------------PEKL 164 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCc-cCC------C-----------------CCce
Confidence 743 12456889999999999999999999999998888631 100 0 0001
Q ss_pred CccccCceeeEEe-cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEc
Q 007533 443 GTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 521 (599)
Q Consensus 443 gtmrLG~~~v~l~-~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQ 521 (599)
+|.++..+. ..+.+++++- +....-|-|--+|..+.+. ...|+.++|.|+... +.++..+++. ++++|
T Consensus 165 ----~Gv~~~~~~~~~~pL~~g~~---d~F~~phSr~~~V~~~~i~--~~~~l~vLA~S~~~g-v~~~~~~~~r-~~~vQ 233 (302)
T PRK05368 165 ----SGVFEHRVLDPHHPLLRGFD---DSFLVPHSRYTEVREEDIR--AATGLEILAESEEAG-VYLFASKDKR-EVFVT 233 (302)
T ss_pred ----eEEEEEEEcCCCChhhcCCC---CccccceeehhhccHHHhc--cCCCCEEEecCCCCC-eEEEEeCCCC-EEEEE
Confidence 222332222 1223444432 1222345444455444443 268999999987666 8899987776 56999
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHhc
Q 007533 522 FHPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 522 FHPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
+||||... -|-..+.....+
T Consensus 234 gHPEYd~~-----tL~~EY~RD~~~ 253 (302)
T PRK05368 234 GHPEYDAD-----TLAQEYFRDLGA 253 (302)
T ss_pred CCCCCCHH-----HHHHHHHHHHhC
Confidence 99999754 344555544443
|
|
| >KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8e-12 Score=122.09 Aligned_cols=135 Identities=24% Similarity=0.373 Sum_probs=92.7
Q ss_pred HhccCCCEEEeCCC----CCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCee
Q 007533 356 KLLKGADGILVPGG----FGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 430 (599)
Q Consensus 356 ~~L~~~DGIlVPGG----fG~rg-~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi 430 (599)
++|..+||++++|. |++.. +-.+...++.....++|++|||+|||+++.+.|+.|-.
T Consensus 55 ~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgr------------------ 116 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGR------------------ 116 (245)
T ss_pred hhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCcccc------------------
Confidence 56888999999996 44332 34455667777778899999999999999998888732
Q ss_pred eeCCCCCcCcCCCccccCceeeEEecCCchhhhccCC---ceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEE
Q 007533 431 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN---RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRME 507 (599)
Q Consensus 431 ~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~---~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE 507 (599)
...|-.|-+|+-.+ ++.. ....+.+|. .-.|..- |+ +.+-.+ +.|++++|.+++.+ +|
T Consensus 117 --------a~KG~~~~lg~iti-vk~~-~~~~~yFG~~~~~l~Iikc--Hq-----Devle~-PE~a~llasSe~ce-ve 177 (245)
T KOG3179|consen 117 --------APKGPDLGLGSITI-VKDA-EKPEKYFGEIPKSLNIIKC--HQ-----DEVLEL-PEGAELLASSEKCE-VE 177 (245)
T ss_pred --------CCCCCcccccceEE-EEec-ccchhhcccchhhhhHHhh--cc-----cceecC-Cchhhhhccccccc-eE
Confidence 11233343443322 2222 455666651 1123333 43 444445 78999999999988 99
Q ss_pred EEEeCCCCeEEEEcccCCCcCC
Q 007533 508 IVELPNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 508 ~iE~~~hpffvGvQFHPE~ss~ 529 (599)
++..++| ++.+|-||||+..
T Consensus 178 ~fs~~~~--~l~fQGHPEyn~e 197 (245)
T KOG3179|consen 178 MFSIEDH--LLCFQGHPEYNKE 197 (245)
T ss_pred EEEecce--EEEecCCchhhHH
Confidence 9999998 5799999999865
|
|
| >COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-10 Score=113.88 Aligned_cols=196 Identities=22% Similarity=0.310 Sum_probs=123.7
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc-CCCEEEeCCCCCC-
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGN- 372 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIlVPGGfG~- 372 (599)
.+||||+ .+-.. .+...+..|++.+|.+... .|.... .+. ++|+|++||||..
T Consensus 2 ~~kvaVi-~fpGt-N~d~d~~~A~~~aG~~~~~----V~~~d~-------------------~~~~~~d~vv~pGGFSyG 56 (231)
T COG0047 2 RPKVAVL-RFPGT-NCDYDMAAAFERAGFEAED----VWHSDL-------------------LLGRDFDGVVLPGGFSYG 56 (231)
T ss_pred CceEEEE-EcCCc-CchHHHHHHHHHcCCCceE----EEeeec-------------------ccCCCccEEEEcCCCCcc
Confidence 4799999 67533 4677888999999998743 465432 234 7999999999854
Q ss_pred -C---c----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 373 -R---G----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 373 -r---g----~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
- | .+..+..++.+.+.++|+||||-|+|+|+ +.+ + |+.+ |..+.....+
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~-e~g--L--lPGa----l~~N~s~~F~-------------- 113 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILS-EAG--L--LPGA----LTRNESLRFE-------------- 113 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHH-HcC--c--CCcc----eecCCCCceE--------------
Confidence 1 2 23455667777778999999999999997 533 1 1221 2122111111
Q ss_pred cccCcee--eEEecCCchhhhccCCce--eEEeee-eeeeeeCchhhhhhccCCeEEEEE-----------eCCCCe--E
Q 007533 445 MRLGSRR--TYFQIKDCKSAKLYGNRT--FIDERH-RHRYEVNPDMIARLENAGLSFTGK-----------DETSQR--M 506 (599)
Q Consensus 445 mrLG~~~--v~l~~~~s~l~~iyg~~~--~I~erH-rHrYeVnp~~v~~le~~Gl~~sa~-----------s~dg~~--v 506 (599)
.+. +.+..++|.+-.-|.+.+ .|-..| --||.++.+.+.+|+..|..+.-+ +++|.. |
T Consensus 114 ----cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~I 189 (231)
T COG0047 114 ----CRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGI 189 (231)
T ss_pred ----EEEEEEEEecCCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhc
Confidence 222 233344455555554322 233333 347888888888888887665544 345553 7
Q ss_pred EEEEeCCCCeEEEEcccCCCcCCCCC----chHHHHHHHHH
Q 007533 507 EIVELPNHPYFIGVQFHPEYKSRPGK----PSPLFLGLIAA 543 (599)
Q Consensus 507 E~iE~~~hpffvGvQFHPE~ss~p~~----p~pLF~~Fv~a 543 (599)
.+|-.++.. ++|..-|||..++... ...||++.++.
T Consensus 190 aGI~n~~G~-V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~ 229 (231)
T COG0047 190 AGITNEDGN-VLGMMPHPERASESLLGGEDGLRLFRSARKY 229 (231)
T ss_pred eeEEcCCCC-EEEecCCchhhhhcccCCchHHHHHHHHHHh
Confidence 777777777 6799999999886543 35567666543
|
|
| >COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-11 Score=116.14 Aligned_cols=82 Identities=24% Similarity=0.405 Sum_probs=63.9
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcC-CcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG-~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r- 373 (599)
++|++++ +|.+....+++|+.++ +++ .|+... ++|+++||+++|||-.+.
T Consensus 1 m~IGVLa----lQG~v~EH~~~l~~~~~~e~------~~Vk~~------------------~dL~~~d~LIiPGGESTTi 52 (194)
T COG0311 1 MKIGVLA----LQGAVEEHLEALEKAGGAEV------VEVKRP------------------EDLEGVDGLIIPGGESTTI 52 (194)
T ss_pred CeEEEEE----ecccHHHHHHHHHhhcCCce------EEEcCH------------------HHhccCcEEEecCccHHHH
Confidence 4788884 5557788899999996 443 344321 578999999999987663
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 374 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 374 ----g~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
...|+...++...++++|+||.|.||-+|+-+
T Consensus 53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake 88 (194)
T COG0311 53 GRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE 88 (194)
T ss_pred HHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence 12578889999999999999999999999644
|
|
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-10 Score=122.92 Aligned_cols=89 Identities=24% Similarity=0.275 Sum_probs=64.4
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
+++||++ +.-.+.--|..-+++|+..|++ +.|+.+-. + +.+.++|+|++|||+...-
T Consensus 244 ~~~Iava-~d~afnFy~~~~~~~L~~~g~~------~~~~~~~~--d--------------~~l~~~d~l~ipGG~~~~~ 300 (449)
T TIGR00379 244 YVRIAVA-QDQAFNFYYQDNLDALTHNAAE------LVPFSPLE--D--------------TELPDVDAVYIGGGFPELF 300 (449)
T ss_pred CcEEEEE-echhhceeHHHHHHHHHHCCCE------EEEECCcc--C--------------CCCCCCCEEEeCCcHHHHH
Confidence 4899999 4444433466788999987765 34565421 0 2356899999999985321
Q ss_pred ------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 375 ------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 375 ------~eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
..++...++.+.+++.|+||+|-|||+|+-.+
T Consensus 301 ~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 301 AEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 24577889999999999999999999997553
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.7e-11 Score=118.85 Aligned_cols=178 Identities=21% Similarity=0.265 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc---------hhH-HH
Q 007533 310 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---------VQG-KI 379 (599)
Q Consensus 310 aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg---------~eg-~i 379 (599)
.-.++..+|+.+|+.+.+ .|+... .+. ...++++|||++||||.... ... ..
T Consensus 11 ~~~~~~~al~~aG~~v~~----v~~~~~-~~~-------------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~ 72 (238)
T cd01740 11 CDRDMAYAFELAGFEAED----VWHNDL-LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLM 72 (238)
T ss_pred CHHHHHHHHHHcCCCEEE----EeccCC-ccc-------------cCCHhhCCEEEECCCCCcccccccccccccChhHH
Confidence 566899999999988643 344321 110 02467899999999975311 111 56
Q ss_pred HHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecC
Q 007533 380 LAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 457 (599)
Q Consensus 380 ~aik~are~~iP~LGICLGmQll~ie--fgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~ 457 (599)
..++.+.++++|+||||.|+|+|+-. +.+.+.. ..+.++... ..+ |. ....+..+
T Consensus 73 ~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~---~~~~~~~~~---------------~~~---~~--v~~~v~~~ 129 (238)
T cd01740 73 EEVKEFAERGGLVLGICNGFQILVELGLLPGALIR---NKGLKFICR---------------WQN---RF--VTLRVENN 129 (238)
T ss_pred HHHHHHHhCCCeEEEECcHHHHHHHcCCCcccccc---CCCCceecc---------------ccC---ce--EEEEEcCC
Confidence 78888889999999999999999753 2222210 011111100 000 00 01111111
Q ss_pred Cch-hhhc-cCCceeEEeeeee-eeeeCchhhhhhccCCeEEEEE-------------eCCCCe--EEEEEeCCCCeEEE
Q 007533 458 DCK-SAKL-YGNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------DETSQR--MEIVELPNHPYFIG 519 (599)
Q Consensus 458 ~s~-l~~i-yg~~~~I~erHrH-rYeVnp~~v~~le~~Gl~~sa~-------------s~dg~~--vE~iE~~~hpffvG 519 (599)
.+. +..+ -+....++..|.+ ||.++++.+.+++..+..+ -+ +++|.. |.+|-.++.. ++|
T Consensus 130 ~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~-~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~Gr-vlg 207 (238)
T cd01740 130 DSPFTKGYMEGEVLRIPVAHGEGRFYADDETLAELEENGQIA-QYVDDDGNVTERYPANPNGSLDGIAGICNEDGR-VLG 207 (238)
T ss_pred CCceecCCCCCCEEEEEeECCceeeEcCHHHHHHHHHCCCEE-EEEcCCCCccccCCCCCCCChhcceEEEcCCCC-EEE
Confidence 122 2221 2233457778875 7888888888887777654 22 356653 8888888887 569
Q ss_pred EcccCCCcCCC
Q 007533 520 VQFHPEYKSRP 530 (599)
Q Consensus 520 vQFHPE~ss~p 530 (599)
...|||....+
T Consensus 208 lMphPer~~~~ 218 (238)
T cd01740 208 MMPHPERAVEP 218 (238)
T ss_pred EcCChHHcccc
Confidence 99999998877
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site |
| >PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-10 Score=110.90 Aligned_cols=161 Identities=18% Similarity=0.330 Sum_probs=95.8
Q ss_pred CCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-----chhHHHH
Q 007533 306 GLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKIL 380 (599)
Q Consensus 306 ~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-----g~eg~i~ 380 (599)
.++.++...+++|+.+|.+.. +|.. | ++|.++||+|+|||-.+. ...|+..
T Consensus 3 ALQG~~~EH~~~l~~lg~~~~------~Vr~-----------~-------~dL~~~dgLIiPGGESTti~~ll~~~gL~~ 58 (188)
T PF01174_consen 3 ALQGAFREHIRMLERLGAEVV------EVRT-----------P-------EDLEGLDGLIIPGGESTTIGKLLRRYGLFE 58 (188)
T ss_dssp SSSSSHHHHHHHHHHTTSEEE------EE-S-----------G-------GGGTT-SEEEE-SS-HHHHHHHHHHTTHHH
T ss_pred ccccChHHHHHHHHHcCCCeE------EeCC-----------H-------HHHccCCEEEECCCcHHHHHHHHHHcCCHH
Confidence 356678888999999998762 2322 1 468899999999986552 1257888
Q ss_pred HHHHHHHcC-CCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCc
Q 007533 381 AAKYAREHR-IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDC 459 (599)
Q Consensus 381 aik~are~~-iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s 459 (599)
.++.+..++ +|+||+|.||-+|+ .++.+ ++...||.-++.+..+
T Consensus 59 ~l~~~~~~g~~Pv~GTCAGlIlLa----~~v~~-----------------------------~~q~~Lg~ldi~V~RN-- 103 (188)
T PF01174_consen 59 PLREFIRSGSKPVWGTCAGLILLA----KEVEG-----------------------------QGQPLLGLLDITVRRN-- 103 (188)
T ss_dssp HHHHHHHTT--EEEEETHHHHHHE----EEECS-----------------------------SCCTSS--EEEEEETT--
T ss_pred HHHHHHHcCCCceeehhHHHHHhh----hhhhh-----------------------------cccccccceeEEEEcc--
Confidence 898888887 99999999999983 44421 0122344555555554
Q ss_pred hhhhccCCceeEEeeeeeeeeeCc----------------hhhhhh-ccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcc
Q 007533 460 KSAKLYGNRTFIDERHRHRYEVNP----------------DMIARL-ENAGLSFTGKDETSQRMEIVELPNHPYFIGVQF 522 (599)
Q Consensus 460 ~l~~iyg~~~~I~erHrHrYeVnp----------------~~v~~l-e~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQF 522 (599)
.||. +..+|+..- .++..+ .+.+..+++..+ |. +-+++-. + ++|+-|
T Consensus 104 ----afGr-------Q~~SFe~~l~i~~~~~~~~avFIRAP~I~~v~~~~~v~vla~~~-g~-iVav~qg--n-~latsF 167 (188)
T PF01174_consen 104 ----AFGR-------QLDSFEADLDIPGLGEPFPAVFIRAPVIEEVGSPEGVEVLAELD-GK-IVAVRQG--N-ILATSF 167 (188)
T ss_dssp ----TTCS-------SSCEEEEEEEETTTESEEEEEESS--EEEEE--TTTEEEEEEET-TE-EEEEEET--T-EEEESS
T ss_pred ----cccc-------chhcEEEEEEeecCCCcEEEEEcCCcEEEEeecccccccccccc-cc-eEEEEec--C-EEEEEe
Confidence 3442 222222211 112222 125677777654 43 4455532 3 689999
Q ss_pred cCCCcCC-CCCchHHHHHHHHHHh
Q 007533 523 HPEYKSR-PGKPSPLFLGLIAAAC 545 (599)
Q Consensus 523 HPE~ss~-p~~p~pLF~~Fv~aa~ 545 (599)
|||.+.. . ++.+.|++.+.
T Consensus 168 HPELT~D~~----r~H~yFl~~v~ 187 (188)
T PF01174_consen 168 HPELTDDDT----RIHEYFLEMVV 187 (188)
T ss_dssp -GGGSSTHC----HHHHHHHHHHC
T ss_pred CCcccCchh----HHHHHHHHHhh
Confidence 9999986 4 67777877653
|
The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A. |
| >TIGR00313 cobQ cobyric acid synthase CobQ | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-09 Score=119.92 Aligned_cols=305 Identities=21% Similarity=0.265 Sum_probs=156.5
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCC---------Ccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDL---------GNY 74 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldl---------g~y 74 (599)
||||| .=|+.||=++++.|.+.|+.+|++|...|-= .|+= ..+|+.||+|.|-.. --+
T Consensus 1 ~~I~G-T~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~--------~~~~----~s~~~~~~~e~~~a~~~qa~a~~~~~~ 67 (475)
T TIGR00313 1 IMVVG-TTSSAGKSTLTAGLCRILARRGYRVAPFKSQ--------NMSL----NSFVTKEGGEIAIAQATQALAAGIEPS 67 (475)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHHhCCCeEEEECCc--------cccc----CccccCCCchhHHHHHHHHHhCCCCch
Confidence 56775 5699999999999999999999999988832 1211 245666776654110 012
Q ss_pred ccccCCCCCCCCc-----ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCc
Q 007533 75 ERFMDIKLTRDNN-----ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGG 149 (599)
Q Consensus 75 erfl~~~l~~~~n-----~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~gg 149 (599)
++---+-|....+ +..|+.+.....++ |.... .+..-+.|++.+.+.+ .+.|++|||=.|
T Consensus 68 ~~~nPv~lk~~~~~~s~~i~~g~~~~~~~a~~----~~~~~---~~~~~~~i~~~~~~l~--------~~~D~vIIEGaG 132 (475)
T TIGR00313 68 VHMNPILLKPKGNFTSQVIVHGRAVGDMNYQE----YYKNK---VDFFLKAIKESLEILA--------REYDYVVIEGAG 132 (475)
T ss_pred hccCCEEeCcCCCCcCcEEEcCcccCcCCHHH----Hhhhh---hHHHHHHHHHHHHHHH--------hcCCEEEEECCC
Confidence 2211111211101 11222111111111 11100 1234566777777775 368999999988
Q ss_pred ccccc----ccchHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcC-CCcccEEEEecCCCCCh
Q 007533 150 TIGDI----ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ-GLTPNILACRSTVALDD 224 (599)
Q Consensus 150 tvgdi----es~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~-Gi~pd~iv~R~~~~l~~ 224 (599)
..-|+ +.....+-++.+.. .+++| +. +...+-. --+-+.++.++.. ++...++|+-.-.+-.+
T Consensus 133 Gl~~~~~~~~d~s~~~lA~~l~a-----pVILV----~d-~~~g~~~--a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~ 200 (475)
T TIGR00313 133 SPAEINLLKRDLANMRIAELANA-----DAILV----AD-IDRGGVF--ASIYGTLKLLPENWRKLIKGIVINKFRGNVD 200 (475)
T ss_pred CccccccCcCCchHHHHHHHhCC-----CEEEE----Ee-CCccHHH--HHHHHHHHHhChhhcCceEEEEEeccCCcHH
Confidence 77664 12223344444322 24444 11 1111011 1222334444432 25566677654433221
Q ss_pred hhh---hccccCCCCCCCCeeeeCC-CCCccchhHHHHHHHHHHHHHcCCCCCCCchhhHHHHHHHhhhc-CCCCceEEE
Q 007533 225 NVK---GKLSQFCHVPEQNIITLYD-VPNIWHIPLLLRKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD-GLHEPVRIA 299 (599)
Q Consensus 225 ~~~---~Kislfc~v~~~~Vi~~~d-v~tiy~vPl~L~g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~-~~~~~v~Ia 299 (599)
..+ +.+.-++.++ |+++.= .++. +|. .++.++...+. .....++||
T Consensus 201 ~~~~~~~~l~e~~gip---vLG~ip~~~~l--l~~------------------------~e~~~~~~~~~~~~~~~~~Ia 251 (475)
T TIGR00313 201 VLKSGIEKLEELTGIP---VLGVLPYDENL--FPE------------------------EDSLVIQERRSRGNAKSIRIG 251 (475)
T ss_pred HHHHHHHHHHHhhCCC---EEEEecCCCcC--CCh------------------------HHhhhHHhhhccCCCCCcEEE
Confidence 122 2223333333 222210 0011 110 11111111111 112238999
Q ss_pred EEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-----
Q 007533 300 MVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----- 374 (599)
Q Consensus 300 iVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg----- 374 (599)
|+ +|.....-| =+++|++. + .+.|++.. +.|.++|+|++|||+-...
T Consensus 252 v~-~~~~~~nf~--~~~~L~~~--~-----~~~f~~~~------------------~~l~~~d~lilpGg~~~~~~~~~l 303 (475)
T TIGR00313 252 VV-RLPRISNFT--DFEPLRYE--A-----FVKFLDLD------------------DSLTGCDAVIIPGSKSTIADLYAL 303 (475)
T ss_pred EE-cCCcccCcc--ChHHHhhC--C-----CeEEeCCc------------------cccccCCEEEECCcchHHHHHHHH
Confidence 99 655443223 56788777 2 24566543 2366899999999984422
Q ss_pred -hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 375 -VQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 375 -~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
..++...++.+.+++.|+||||.|||+|.-.
T Consensus 304 ~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 304 KQSGFAEEILDFAKEGGIVIGICGGYQMLGKE 335 (475)
T ss_pred HhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence 1346788888888999999999999999644
|
|
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=119.64 Aligned_cols=86 Identities=26% Similarity=0.376 Sum_probs=61.4
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHH-cCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLH-ASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~h-aG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
.+++|||+ +|.... ++ .=+++|+. +|+++. ++++. +.+.++|||+||||+..
T Consensus 250 ~~~~i~v~-~~~~a~-~f-~nl~~l~~~~g~~v~------~~s~~------------------~~l~~~d~lilpGg~~~ 302 (488)
T PRK00784 250 GALRIAVI-RLPRIS-NF-TDFDPLRAEPGVDVR------YVRPG------------------EPLPDADLVILPGSKNT 302 (488)
T ss_pred CceEEEEE-eCCCcC-Cc-cChHHHhhcCCCeEE------EECCc------------------cccccCCEEEECCccch
Confidence 35899999 665332 33 55788887 887653 34431 23568999999999743
Q ss_pred Cch------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 373 RGV------QGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 373 rg~------eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
... .++...++.+.++++|+||||.|||+|+-.+
T Consensus 303 ~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 303 IADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 211 2467788888899999999999999997553
|
|
| >KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.7e-11 Score=117.16 Aligned_cols=179 Identities=20% Similarity=0.288 Sum_probs=105.5
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhH--HHHHHHHHHHc--
Q 007533 313 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG--KILAAKYAREH-- 388 (599)
Q Consensus 313 SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg--~i~aik~are~-- 388 (599)
|.++.++.+|+++ +.+.+-.++++ ....|+.++||++|||.-.++.-. .......+.|.
T Consensus 81 SYVK~aEsgGARV---iPli~nepEe~--------------lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nD 143 (340)
T KOG1559|consen 81 SYVKLAESGGARV---IPLIYNEPEEI--------------LFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERND 143 (340)
T ss_pred HHHHHHHcCCceE---EEEecCCcHHH--------------HHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccC
Confidence 8899999999987 34444444322 235688999999999977776522 22233444444
Q ss_pred ---CCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCC--CcCcCCCccccCceeeEEecCCchhhh
Q 007533 389 ---RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG--SKTHMGGTMRLGSRRTYFQIKDCKSAK 463 (599)
Q Consensus 389 ---~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~--~~~~~GgtmrLG~~~v~l~~~~s~l~~ 463 (599)
..|++|||||+.+|.+-...+-.-+. .||... .-|+-+ ...+.-+||-- .+.+ .++.+
T Consensus 144 aGehFPvyg~CLGFE~lsmiISqnrdile-----~~d~vd-----~AssLqF~~nvn~~~t~FQ-----rFPp--ELLkk 206 (340)
T KOG1559|consen 144 AGEHFPVYGICLGFELLSMIISQNRDILE-----RFDAVD-----VASSLQFVGNVNIHGTMFQ-----RFPP--ELLKK 206 (340)
T ss_pred CccccchhhhhhhHHHHHHHHhcChhHHH-----hhcccc-----cccceeeecccceeehhHh-----hCCH--HHHHH
Confidence 38999999999999887664321111 121110 001110 11222334321 1111 35555
Q ss_pred ccCCceeEEeeeeeeeeeCchhhh---hhccCCeEEEEEeCCCC---eEEEEEeCCCCeEEEEcccCCCcCCC
Q 007533 464 LYGNRTFIDERHRHRYEVNPDMIA---RLENAGLSFTGKDETSQ---RMEIVELPNHPYFIGVQFHPEYKSRP 530 (599)
Q Consensus 464 iyg~~~~I~erHrHrYeVnp~~v~---~le~~Gl~~sa~s~dg~---~vE~iE~~~hpffvGvQFHPE~ss~p 530 (599)
+-. ... ..++|+|.+.|+..+ .| ..-+.++-++.|++ .|..++.+.+| +.|+|||||+..-.
T Consensus 207 L~~-dcL--vmq~Hk~gisp~nF~~N~~L-s~FFnilTT~~D~~~k~fvSTv~~~kYP-vtgfQWHPEKnafE 274 (340)
T KOG1559|consen 207 LST-DCL--VMQNHKFGISPKNFQGNPAL-SSFFNILTTCTDGNSKTFVSTVESKKYP-VTGFQWHPEKNAFE 274 (340)
T ss_pred hcc-chh--eeeccccccchhhccCCHHH-HHHHhheeeecCCCceEEEEeecceecc-ceeeeecCccCccc
Confidence 532 222 357799999886542 23 23355665655553 47888899999 56999999987643
|
|
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-08 Score=107.51 Aligned_cols=291 Identities=18% Similarity=0.259 Sum_probs=154.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc-cccCCCCCCCccccceEEEccCCccccCCCCccccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP-YLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp-yln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~ 79 (599)
|+=|||||- =||.||=.+++.|-+.|+.+|++|...|.-| |+ || ..|.. -.+
T Consensus 1 m~~~~i~~~-~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--D~-----~~~~~-------------------~~g 53 (433)
T PRK13896 1 MKGFVLGGT-SSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--DP-----SHHEA-------------------VAG 53 (433)
T ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--CH-----HHHHH-------------------HhC
Confidence 666788865 6999999999999999999999999999877 53 43 33332 222
Q ss_pred CCCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccc
Q 007533 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM 157 (599)
Q Consensus 80 ~~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit--~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~ 157 (599)
... .| +=||.. +.|++...+ ...|++|||==|=+-|=+..
T Consensus 54 ~~~---~n-------------------------ld~~~~~~~~i~~~~~~----------~~~d~~vIEG~gGl~dg~~~ 95 (433)
T PRK13896 54 RPS---RT-------------------------LDPWLSGEDGMRRNYYR----------GEGDICVVEGVMGLYDGDVS 95 (433)
T ss_pred CCc---cc-------------------------CChhhCCHHHHHHHHHh----------hcCCEEEEECCCccccCCCC
Confidence 211 01 113322 224333321 13799999953333353323
Q ss_pred hHHHHHHHhhhHcCCCCEEEEeeeeeeeecC-CCccccCCchhhhhhhhc---CCCcccEEEEecCCCC--C----hhhh
Q 007533 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRG---QGLTPNILACRSTVAL--D----DNVK 227 (599)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~-~~e~ktkptq~sv~~Lrs---~Gi~pd~iv~R~~~~l--~----~~~~ 227 (599)
-..+-++++... +++ +..+ .|-.=--+|=.++.++.. .|+...++|+-...+- . +...
T Consensus 96 s~adla~~l~~P-----viL-------Vv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~ 163 (433)
T PRK13896 96 STAMVAEALDLP-----VVL-------VVDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGGRHADGIRDALP 163 (433)
T ss_pred CHHHHHHHHCCC-----EEE-------EEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcHHHHHHHHHhhh
Confidence 344445544322 111 2221 121111122233344433 4899999998876542 1 1122
Q ss_pred hccccCCCCCCCCeeeeCCCCCccchhHH-------HHHHHHHHHHHcCCCCCCCchhhHHHHHHHhh-------h-cCC
Q 007533 228 GKLSQFCHVPEQNIITLYDVPNIWHIPLL-------LRKAHEAIFKVLNLQGTTKEPLLKEWTSRAEI-------C-DGL 292 (599)
Q Consensus 228 ~Kislfc~v~~~~Vi~~~dv~tiy~vPl~-------L~g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~-------~-~~~ 292 (599)
+.+..+..++...-+.+ ++| |+-|. ++...+.+.+.++++ .-.++... . ...
T Consensus 164 ~~i~vlG~lP~~~~~~~---~~R-HLGLv~~~e~~~~~~~~~~~~~~~d~~---------~l~~~a~~~~~~~~~~~~~~ 230 (433)
T PRK13896 164 DELTYFGRIPPRDDLEI---PDR-HLGLHMGSEAPLDDDALDEAAEHIDAE---------RLAAVAREPPRPEPPEEAPA 230 (433)
T ss_pred hcCceeEecccCCCCCC---CCC-CcCCCcchhhccHHHHHHHHHHhCCHH---------HHHHHhhCCCCccccccccC
Confidence 22445555555443332 233 12111 001111122222221 00111100 0 011
Q ss_pred CCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 293 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 293 ~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
...++|||.-| -.+.=-|..-+++|+.+ +++. .+++ +.+ +.+.++|+|++|||+-.
T Consensus 231 ~~~~~iavA~D-~AF~FyY~enl~~L~~~-aelv------~fSP--l~~--------------~~lp~~D~l~lpGG~~e 286 (433)
T PRK13896 231 TGDPTVAVARD-AAFCFRYPATIERLRER-ADVV------TFSP--VAG--------------DPLPDCDGVYLPGGYPE 286 (433)
T ss_pred CCCCeEEEEEc-CccceeCHHHHHHHHhc-CcEE------EEcC--CCC--------------CCCCCCCEEEeCCCchh
Confidence 22379999833 23433577888999998 6542 2222 211 23568999999999855
Q ss_pred Cch-----hHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 373 RGV-----QGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 373 rg~-----eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
-.. .+....++.+.+++.|++|||-|||+|+-.
T Consensus 287 ~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 287 LHADALADSPALDELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred hHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 321 223478888888999999999999999643
|
|
| >PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.7e-08 Score=99.15 Aligned_cols=196 Identities=21% Similarity=0.277 Sum_probs=103.7
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC--C
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN--R 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~--r 373 (599)
+||+|+= +- ....-.....||+.+|+++.. .|+ .++-... ..|+++|+|++||||+. .
T Consensus 2 pkV~Vl~-~p-GtNce~e~~~A~~~aG~~~~~----v~~--~dl~~~~------------~~l~~~~~lvipGGFS~gD~ 61 (259)
T PF13507_consen 2 PKVAVLR-FP-GTNCERETAAAFENAGFEPEI----VHI--NDLLSGE------------SDLDDFDGLVIPGGFSYGDY 61 (259)
T ss_dssp -EEEEEE--T-TEEEHHHHHHHHHCTT-EEEE----EEC--CHHHTTS--------------GCC-SEEEE-EE-GGGGT
T ss_pred CEEEEEE-CC-CCCCHHHHHHHHHHcCCCceE----EEE--Eeccccc------------CchhhCcEEEECCccCcccc
Confidence 6888883 32 233667889999999998754 233 2221110 36899999999999854 2
Q ss_pred chh------------HHHHHHHHHHHc-CCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCc
Q 007533 374 GVQ------------GKILAAKYAREH-RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTH 440 (599)
Q Consensus 374 g~e------------g~i~aik~are~-~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~ 440 (599)
--. ....+++...+. +.|+||||-|+|+|+ +.| ++. .....+ ....+.+++...
T Consensus 62 l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~-~~G--llp--~~~~~~-----~~~~~~L~~N~s--- 128 (259)
T PF13507_consen 62 LRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILV-ELG--LLP--GGEIKD-----SEQSPALTPNAS--- 128 (259)
T ss_dssp TSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHC-CCC--CST--T-----------TT--EEE--TT---
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHH-HhC--cCC--Cccccc-----cCCCcEEcCCCC---
Confidence 111 235667777777 999999999999994 333 221 100000 112223332211
Q ss_pred CCCccccCceeeEEe--cCC-ch-hhhccCCceeEEeeeee-eeee-CchhhhhhccCCeEEEEEeC-------------
Q 007533 441 MGGTMRLGSRRTYFQ--IKD-CK-SAKLYGNRTFIDERHRH-RYEV-NPDMIARLENAGLSFTGKDE------------- 501 (599)
Q Consensus 441 ~GgtmrLG~~~v~l~--~~~-s~-l~~iyg~~~~I~erHrH-rYeV-np~~v~~le~~Gl~~sa~s~------------- 501 (599)
+ |+=.+-+.+. +.+ +. ++.+ ....+...|.+ ||.+ +++..+.|++.|..+.-+..
T Consensus 129 --~--~fe~rwv~~~v~~~s~~~~~~~~--~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NP 202 (259)
T PF13507_consen 129 --G--RFESRWVNLVVNENSPSIFLRGL--EGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNP 202 (259)
T ss_dssp --S--S-EEEEEEEEE--SSTTCCCTTT--TCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSS
T ss_pred --C--CeEEEEEEEEEecCCcceecCCC--CEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCC
Confidence 1 1111112221 221 11 1222 12234445554 5777 67788889888887766543
Q ss_pred CCC--eEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 502 TSQ--RMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 502 dg~--~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
+|. -|.+|-.++.. ++|...|||....+.
T Consensus 203 NGS~~~IAGics~~Gr-vlglMpHPEr~~~~~ 233 (259)
T PF13507_consen 203 NGSVNNIAGICSPDGR-VLGLMPHPERAFEPW 233 (259)
T ss_dssp S--GGGEEEEE-TTSS-EEEESSBCCGTTCCC
T ss_pred CCCccceeEEEcCCCC-EEEEcCChHHhCchh
Confidence 332 38999998888 569999999887664
|
|
| >TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.4e-07 Score=108.45 Aligned_cols=220 Identities=19% Similarity=0.228 Sum_probs=124.3
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
.++|++|+ .+-. ...-.....|++.+|+.+.. .|+. +|....+.+ ........|+++|+|++||||+.-
T Consensus 976 ~kpkvaIl-~~pG-tNce~d~a~Af~~aG~~~~~----v~~~--dl~~~~i~~---s~~~~~~~l~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857 976 EKPRVVIP-VFPG-TNSEYDSAKAFEKEGAEVNL----VIFR--NLNEEALVE---SVETMVDEIDKSQILMLPGGFSAG 1044 (1239)
T ss_pred CCCeEEEE-ECCC-CCCHHHHHHHHHHcCCceEE----EEEe--cCccccccc---chhhhhcccccCcEEEEcCccCcc
Confidence 35899998 4432 34677889999999998533 3432 222211111 111112357999999999998542
Q ss_pred ----ch----------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCC-CCCeeeeCCCCCc
Q 007533 374 ----GV----------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNT-KNPCVIFMPEGSK 438 (599)
Q Consensus 374 ----g~----------eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~-~~~vi~~mpe~~~ 438 (599)
+- .....+++...+.+.|+||||-|||+|+ ++| |-.. .++.+.+ ..| .++....
T Consensus 1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~-~lG-----LlP~--~~~~~~~~~~p--~l~~N~s- 1113 (1239)
T TIGR01857 1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALV-KSG-----LLPY--GNIEAANETSP--TLTYNDI- 1113 (1239)
T ss_pred cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHH-HcC-----CCcC--ccccccccCCc--eeeecCC-
Confidence 11 2345566666678999999999999995 433 2110 0111100 111 1121110
Q ss_pred CcCCCccccCce--eeEEecCCchhhhcc--CCceeEEeeeee-eeeeCchhhhhhccCCeEEEEE-------------e
Q 007533 439 THMGGTMRLGSR--RTYFQIKDCKSAKLY--GNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------D 500 (599)
Q Consensus 439 ~~~GgtmrLG~~--~v~l~~~~s~l~~iy--g~~~~I~erHrH-rYeVnp~~v~~le~~Gl~~sa~-------------s 500 (599)
+ |+=.+ .+.+.++.|.+-.-+ |..-.|...|.- ||.++++.+++|+..|...+-+ +
T Consensus 1114 ---~---rf~~r~v~~~v~~~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~N 1187 (1239)
T TIGR01857 1114 ---N---RHVSKIVRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYN 1187 (1239)
T ss_pred ---C---CeEEeeeEEEECCCCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCC
Confidence 0 11111 122223223333333 222345556644 6888877788888888766554 4
Q ss_pred CCCCe--EEEEEeCCCCeEEEEcccCCCcCCCCC-------chHHHHHHHH
Q 007533 501 ETSQR--MEIVELPNHPYFIGVQFHPEYKSRPGK-------PSPLFLGLIA 542 (599)
Q Consensus 501 ~dg~~--vE~iE~~~hpffvGvQFHPE~ss~p~~-------p~pLF~~Fv~ 542 (599)
++|.. +++|-.++.. ++|..-|||....+.- ...+|.+.++
T Consensus 1188 PNGS~~~IaGi~s~dGr-vlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1188 PNGSSLAIEGITSPDGR-IFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred CCCChhhhhEeECCCCC-EEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 55653 7888888887 5699999998765532 2567776653
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. |
| >PRK05297 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.8e-07 Score=110.14 Aligned_cols=197 Identities=18% Similarity=0.143 Sum_probs=116.9
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
.++|++|+ .+- ....-.....||+.+|+.+.. .|+. +|.... ..|.++++|++||||+.-
T Consensus 1034 ~~pkv~il-~~p-G~N~~~e~~~Af~~aG~~~~~----v~~~--dl~~~~------------~~l~~~~~l~~~GGFS~g 1093 (1290)
T PRK05297 1034 ARPKVAIL-REQ-GVNSHVEMAAAFDRAGFDAID----VHMS--DLLAGR------------VTLEDFKGLVACGGFSYG 1093 (1290)
T ss_pred CCCeEEEE-ECC-CCCCHHHHHHHHHHcCCCeEE----EEee--cCcCCC------------CChhhCcEEEECCccCCc
Confidence 45789998 343 234677889999999998732 2332 443211 248899999999997552
Q ss_pred ch--h------------HHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccCC-CccccCCCCCCCeeeeCCCCC
Q 007533 374 GV--Q------------GKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDA-NSTEFDPNTKNPCVIFMPEGS 437 (599)
Q Consensus 374 g~--e------------g~i~aik~ar-e~~iP~LGICLGmQll~iefgr~Vlgl~dA-~S~Ef~~~~~~~vi~~mpe~~ 437 (599)
.. . ....+++... +.+.++||||.|+|+|+ +++ .++ +.+ ++..+..+.....+..
T Consensus 1094 D~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~-~lg-~l~--p~~~~~p~l~~N~s~rfesr----- 1164 (1290)
T PRK05297 1094 DVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMS-NLK-EII--PGAEHWPRFVRNRSEQFEAR----- 1164 (1290)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHH-HhC-Ccc--CCCCCCCeEeecCCCCeEEe-----
Confidence 11 1 2234454433 56899999999999995 443 221 111 1111111111111110
Q ss_pred cCcCCCccccCceeeEEecCCch-hhhccCCceeEEeeeee-eeeeCchhhhhhccCCeEEEEE-------------eCC
Q 007533 438 KTHMGGTMRLGSRRTYFQIKDCK-SAKLYGNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------DET 502 (599)
Q Consensus 438 ~~~~GgtmrLG~~~v~l~~~~s~-l~~iyg~~~~I~erHrH-rYeVnp~~v~~le~~Gl~~sa~-------------s~d 502 (599)
| -.+.+.++.|. ++.+-|..-.++..|.+ ||.++++...+|++.|...+-+ +++
T Consensus 1165 -----~------~~~~v~~~~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPN 1233 (1290)
T PRK05297 1165 -----F------SLVEVQESPSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPN 1233 (1290)
T ss_pred -----e------eEEEECCCCChhHhhcCCCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCC
Confidence 1 11222222233 33333333457778877 6777777777887888665544 456
Q ss_pred CCe--EEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 503 SQR--MEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 503 g~~--vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
|.. |++|-.++.. ++|...|||....+.
T Consensus 1234 GS~~~IaGi~s~dGr-vlglMpHPEr~~~~~ 1263 (1290)
T PRK05297 1234 GSPNGITGLTTADGR-VTIMMPHPERVFRTV 1263 (1290)
T ss_pred CChhcceEeECCCCC-EEEEcCChHHhcchh
Confidence 653 8888888888 569999999877654
|
|
| >PLN03206 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-06 Score=105.21 Aligned_cols=203 Identities=15% Similarity=0.162 Sum_probs=115.5
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCC--C
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF--G 371 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGf--G 371 (599)
.++||||+ .+-. ...-.....||+.+|+.+.. .|+. +|.+.. ..|.+++||++|||| |
T Consensus 1036 ~~pkVaVl-~~pG-tN~~~e~~~Af~~aGf~~~~----V~~~--dl~~~~------------~~L~~~~glv~pGGFSyG 1095 (1307)
T PLN03206 1036 SKPKVAII-REEG-SNGDREMAAAFYAAGFEPWD----VTMS--DLLNGR------------ISLDDFRGIVFVGGFSYA 1095 (1307)
T ss_pred CCCeEEEE-ECCC-CCCHHHHHHHHHHcCCceEE----EEee--eccccc------------ccccceeEEEEcCcCCCc
Confidence 46899999 3432 33677889999999998732 3333 443211 248899999999998 4
Q ss_pred CCchh------------HHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccCCCccc---cCCCCCCCeeeeCCC
Q 007533 372 NRGVQ------------GKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDANSTE---FDPNTKNPCVIFMPE 435 (599)
Q Consensus 372 ~rg~e------------g~i~aik~ar-e~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~E---f~~~~~~~vi~~mpe 435 (599)
|.--. ....+++... +.+.++||||.|+|+|+ ++| ++ +.+.... -..+...| .++..
T Consensus 1096 D~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~-~lg--ll--Pg~~~~~~~~~~~~e~~p--~l~~N 1168 (1307)
T PLN03206 1096 DVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMA-LLG--WV--PGPQVGGGLGAGGDPSQP--RFVHN 1168 (1307)
T ss_pred cccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHH-HcC--CC--CCCccccccccccccCCc--eeeec
Confidence 43111 2334455555 45899999999999995 332 21 2111000 00001111 11111
Q ss_pred CCcCcCCCccccCce--eeEEecCCch-hhhccCCceeEEeeeee-eeeeC-chhhhhhccCCeEEEEE-----------
Q 007533 436 GSKTHMGGTMRLGSR--RTYFQIKDCK-SAKLYGNRTFIDERHRH-RYEVN-PDMIARLENAGLSFTGK----------- 499 (599)
Q Consensus 436 ~~~~~~GgtmrLG~~--~v~l~~~~s~-l~~iyg~~~~I~erHrH-rYeVn-p~~v~~le~~Gl~~sa~----------- 499 (599)
.-+ |+=.+ .+.+.+..|. ++.+-|..-.++..|.| ||.+. ++...+|+..|...+-+
T Consensus 1169 -----~s~--rfesr~v~v~V~~s~si~l~~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~y 1241 (1307)
T PLN03206 1169 -----ESG--RFECRFTSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQY 1241 (1307)
T ss_pred -----CCC--CeEEeceEEEECCCCChhhcccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCCC
Confidence 001 11111 2233232233 33333333457778877 44544 55677777777665544
Q ss_pred --eCCCCe--EEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 500 --DETSQR--MEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 500 --s~dg~~--vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
+++|.. |++|-.++.. ++|...|||....+.
T Consensus 1242 P~NPNGS~~~IAGi~s~dGR-vlgmMpHPER~~~~~ 1276 (1307)
T PLN03206 1242 PFNPNGSPLGIAALCSPDGR-HLAMMPHPERCFLMW 1276 (1307)
T ss_pred CCCCCCChhhceeeECCCCC-EEEEcCCHHHhhhhh
Confidence 456654 8888888888 469999999876654
|
|
| >KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.1e-07 Score=85.47 Aligned_cols=88 Identities=18% Similarity=0.227 Sum_probs=64.3
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcc--eeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDL--RKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 373 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~--~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r- 373 (599)
.|+++ .++.++...++.++.+.++. .+++.+.-+... +++.++||+++|||....
T Consensus 13 VIGVL----ALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~------------------~D~aq~DaLIIPGGEST~m 70 (226)
T KOG3210|consen 13 VIGVL----ALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKTK------------------NDLAQCDALIIPGGESTAM 70 (226)
T ss_pred EEeee----ehhhHHHHHHHHHHHhhccCcceEEEEEEeecCH------------------HHHhhCCEEEecCCchhHH
Confidence 36666 57779999999999887777 555555554431 578999999999987653
Q ss_pred ----chhHHHHHHHHHHHcC-CCEEEEehhHHHHHHHh
Q 007533 374 ----GVQGKILAAKYAREHR-IPYLGICLGMQVAVIEF 406 (599)
Q Consensus 374 ----g~eg~i~aik~are~~-iP~LGICLGmQll~ief 406 (599)
...|+...+.....+. +|+||.|.||.+|+-..
T Consensus 71 slia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql 108 (226)
T KOG3210|consen 71 SLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQL 108 (226)
T ss_pred HHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhh
Confidence 2245555566666666 99999999999997543
|
|
| >cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ) | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-07 Score=93.77 Aligned_cols=83 Identities=28% Similarity=0.335 Sum_probs=60.7
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc---
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 374 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg--- 374 (599)
|+|+ +|.... ++.|+.++++..|+++.. ++.. +.+.++|+|++|||+....
T Consensus 1 ~~~~-~y~~~g-N~~~l~~~~~~~G~~~~~------~~~~------------------~~~~~~d~lilpGg~~~~~~~~ 54 (194)
T cd01750 1 IAVI-RYPDIS-NFTDLDPLAREPGVDVRY------VEVP------------------EGLGDADLIILPGSKDTIQDLA 54 (194)
T ss_pred CEee-cCCCcc-CHHHHHHHHhcCCceEEE------EeCC------------------CCCCCCCEEEECCCcchHHHHH
Confidence 4566 686543 789999999999987633 3322 1256789999999974321
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 375 ---VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 375 ---~eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
..++...++.+.++++|+||||.|||+|+-.+
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 12466778888889999999999999996553
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ. |
| >TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-06 Score=104.73 Aligned_cols=195 Identities=15% Similarity=0.113 Sum_probs=110.2
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
.++|+||+ .+-. ...-.....||+.+|+.+.. .|+. +|.... ..|++++||++||||+.-
T Consensus 1054 ~~p~vail-~~pG-~N~~~e~~~Af~~aGf~~~~----v~~~--dl~~~~------------~~l~~~~~lv~~GGFSyg 1113 (1310)
T TIGR01735 1054 VRPKVAIL-REQG-VNGDREMAAAFDRAGFEAWD----VHMS--DLLAGR------------VHLDEFRGLAACGGFSYG 1113 (1310)
T ss_pred CCceEEEE-ECCC-CCCHHHHHHHHHHhCCCcEE----EEEe--ccccCC------------cchhheeEEEEcCCCCCc
Confidence 45899999 3432 33677889999999998533 3332 332211 147889999999998552
Q ss_pred ch--------------hHHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccC-CC-ccccCCCCCCCeeeeCCCC
Q 007533 374 GV--------------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRD-AN-STEFDPNTKNPCVIFMPEG 436 (599)
Q Consensus 374 g~--------------eg~i~aik~ar-e~~iP~LGICLGmQll~iefgr~Vlgl~d-A~-S~Ef~~~~~~~vi~~mpe~ 436 (599)
.. .....+++.+. +.+.++||||.|+|+|+-+. ||-. +. ..-|..+........
T Consensus 1114 D~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~-----gllp~~~~~p~l~~N~s~~fe~r---- 1184 (1310)
T TIGR01735 1114 DVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLL-----EWIPGTENWPHFVRNNSERFEAR---- 1184 (1310)
T ss_pred cchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHh-----CcCCCCCCCceeeecCCCCeEEe----
Confidence 11 12334454444 66899999999999997332 2221 10 000111111111110
Q ss_pred CcCcCCCccccCceeeEEecCCch-hhhccCCceeEEeeeee-eee-eCchhhhhhccCCeEEEEE-------------e
Q 007533 437 SKTHMGGTMRLGSRRTYFQIKDCK-SAKLYGNRTFIDERHRH-RYE-VNPDMIARLENAGLSFTGK-------------D 500 (599)
Q Consensus 437 ~~~~~GgtmrLG~~~v~l~~~~s~-l~~iyg~~~~I~erHrH-rYe-Vnp~~v~~le~~Gl~~sa~-------------s 500 (599)
| -.+.+.+..|. ++.+-|..-.++..|.+ ||. .+++...++++.|...+-+ +
T Consensus 1185 ------~------~~~~v~~s~s~~~~~~~g~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~N 1252 (1310)
T TIGR01735 1185 ------V------ASVRVGESPSIMLRGMAGSRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLN 1252 (1310)
T ss_pred ------e------eEEEECCCCChhhhhcCCCEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCC
Confidence 1 11222222233 33332333346667765 443 4556666777777655444 4
Q ss_pred CCCCe--EEEEEeCCCCeEEEEcccCCCcCCC
Q 007533 501 ETSQR--MEIVELPNHPYFIGVQFHPEYKSRP 530 (599)
Q Consensus 501 ~dg~~--vE~iE~~~hpffvGvQFHPE~ss~p 530 (599)
++|.. |.+|-.++.. ++|...|||...++
T Consensus 1253 PNGS~~~IaGi~s~dGr-vl~~MpHPEr~~~~ 1283 (1310)
T TIGR01735 1253 PNGSPGGIAGITSCDGR-VTIMMPHPERVFRA 1283 (1310)
T ss_pred CCCChhcceEeECCCCC-EEEEcCCHHHhhhH
Confidence 56653 7788888877 46999999876654
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. |
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.4e-07 Score=101.75 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=54.0
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC-Cc
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~-rg 374 (599)
+||+|+ +..|+.+||++.+.. .+.+.|++.. +.+.++|+||+|||.-. .+
T Consensus 1 m~iGvl--------al~sv~~al~~lg~~---~~~vv~~~~~------------------~~l~~~D~lILPGG~~~~~~ 51 (476)
T PRK06278 1 MEIGLL--------DIKGSLPCFENFGNL---PTKIIDENNI------------------KEIKDLDGLIIPGGSLVESG 51 (476)
T ss_pred CEEEEE--------ehhhHHHHHHHhcCC---CcEEEEeCCh------------------HHhccCCEEEECCCchhhcc
Confidence 478888 567899999998862 1234565431 46789999999998522 12
Q ss_pred --hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 375 --VQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 375 --~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
.++...+++ +.++|+||||.|||+|+-.
T Consensus 52 ~l~~~l~~~i~---~~g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 52 SLTDELKKEIL---NFDGYIIGICSGFQILSEK 81 (476)
T ss_pred hHHHHHHHHHH---HcCCeEEEEcHHHHhcccc
Confidence 134444443 3489999999999999644
|
|
| >cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=6e-07 Score=88.80 Aligned_cols=75 Identities=23% Similarity=0.226 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC---c---hhHHHHHHH
Q 007533 310 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---G---VQGKILAAK 383 (599)
Q Consensus 310 aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r---g---~eg~i~aik 383 (599)
-|...+++|+.+|+++. +++... + +.+.++|+|+||||+... . ..++..+++
T Consensus 12 ~y~e~~~~l~~~G~~v~------~~s~~~--~--------------~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~ 69 (198)
T cd03130 12 YYPENLELLEAAGAELV------PFSPLK--D--------------EELPDADGLYLGGGYPELFAEELSANQSMRESIR 69 (198)
T ss_pred ccHHHHHHHHHCCCEEE------EECCCC--C--------------CCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHH
Confidence 57788999999997653 344310 0 234569999999986442 1 135778899
Q ss_pred HHHHcCCCEEEEehhHHHHHHHh
Q 007533 384 YAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 384 ~are~~iP~LGICLGmQll~ief 406 (599)
.+.++++|++|||.|||+|.-..
T Consensus 70 ~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 70 AFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HHHHcCCCEEEEcccHHHHHHHh
Confidence 88899999999999999997554
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB. |
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00045 Score=75.60 Aligned_cols=195 Identities=22% Similarity=0.211 Sum_probs=109.3
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc-CCCEEEeCCCCCCC-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNR- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIlVPGGfG~r- 373 (599)
+|||+.-| ..+.=-|..-++.|+.+|+++.- .+ -|.+ +.+. ++|+|.|||||-.-
T Consensus 246 ~rIAVA~D-~AF~FyY~~nl~~Lr~~GAelv~------FS--PL~D--------------~~lP~~~D~vYlgGGYPElf 302 (451)
T COG1797 246 VRIAVARD-AAFNFYYPENLELLREAGAELVF------FS--PLAD--------------EELPPDVDAVYLGGGYPELF 302 (451)
T ss_pred ceEEEEec-chhccccHHHHHHHHHCCCEEEE------eC--CcCC--------------CCCCCCCCEEEeCCCChHHH
Confidence 78999833 23333577899999999998732 22 2322 2344 69999999987552
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc-ccc
Q 007533 374 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT-MRL 447 (599)
Q Consensus 374 -----g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt-mrL 447 (599)
..+.+...|+.+.+.++|++|=|-|+--|+-. |.+++. ..++-+-++|- ...|+.. +.|
T Consensus 303 A~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~-------le~~~G------~~~~M~Gvlp~--~~~m~~Rl~~l 367 (451)
T COG1797 303 AEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES-------LEDADG------DTYEMVGVLPG--STRMTKRLQAL 367 (451)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh-------eeccCC------ceeeeeeeecc--chhhhhhhhcc
Confidence 33568889999999999999999999777432 222211 12233333332 2334444 346
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCe--EEEEEeCCCCeEEEEcccCC
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQR--MEIVELPNHPYFIGVQFHPE 525 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~--vE~iE~~~hpffvGvQFHPE 525 (599)
|=+......++.+... |.+..=.|.|+-+....++. ..-+-....+|.. -+++... ..+|.=.|-=
T Consensus 368 GY~~~~~~~d~~~~~~--G~~irGHEFHyS~~~~~~~~-------~~a~~~~~g~g~~~~~~G~~~g---nv~asY~H~H 435 (451)
T COG1797 368 GYREAEAVDDTLLLRA--GEKIRGHEFHYSRLITEEDA-------EPAFRVRRGDGIDNGRDGYRSG---NVLASYLHLH 435 (451)
T ss_pred ceeEEEecCCcccccC--CceeeeeeeeeeecccCCcC-------ceeeeeecccCccccccceeeC---CeEEEEEeee
Confidence 6666666555322222 11222246665443333221 1111111111210 1222222 3668888887
Q ss_pred CcCCCCCchHHHHHHHHHH
Q 007533 526 YKSRPGKPSPLFLGLIAAA 544 (599)
Q Consensus 526 ~ss~p~~p~pLF~~Fv~aa 544 (599)
+.|.| ..+.+|+++|
T Consensus 436 ~~s~~----~~~~~~v~~~ 450 (451)
T COG1797 436 FASNP----AFAARFVAAA 450 (451)
T ss_pred cccCH----HHHHHHHHhh
Confidence 77776 5778888876
|
|
| >PHA03366 FGAM-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00022 Score=88.00 Aligned_cols=91 Identities=20% Similarity=0.155 Sum_probs=62.3
Q ss_pred CCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 007533 292 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 292 ~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
+..++||||+ .+- ....-.....|+..+|+.+.. .|+ .||... ..|++++||++||||+
T Consensus 1025 ~~~~prVaIl-~~p-G~N~~~e~~~Af~~aGf~~~~----v~~--~dL~~~-------------~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366 1025 PDKRHRVAVL-LLP-GCPGPHALLAAFTNAGFDPYP----VSI--EELKDG-------------TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred CCCCCeEEEE-ECC-CCCCHHHHHHHHHHcCCceEE----EEe--ecCCCC-------------CccccceEEEEcCCCC
Confidence 3457899999 343 234677899999999998643 222 344321 1288999999999986
Q ss_pred CCc-------h-------hHHHHHHHHHH-HcCCCEEEEeh-hHHHHH
Q 007533 372 NRG-------V-------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 403 (599)
Q Consensus 372 ~rg-------~-------eg~i~aik~ar-e~~iP~LGICL-GmQll~ 403 (599)
... + +....+++... +.+.+.||||- |+|+|+
T Consensus 1084 ~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~ 1131 (1304)
T PHA03366 1084 AEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILF 1131 (1304)
T ss_pred CcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHH
Confidence 631 1 22334555555 45899999997 999995
|
|
| >TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00034 Score=85.90 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 293 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 293 ~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
..++||||+ .+- ....-.....|++.+|+.+.. +.-.+|... +.|++++||+++|||+.
T Consensus 927 ~~~p~VaIl-~~p-G~N~~~e~~~Af~~aGf~~~~------v~~~dl~~~-------------~~l~~f~glv~~Ggfsy 985 (1202)
T TIGR01739 927 DPRHQVAVL-LLP-GQSVPHGLLAALTNAGFDPRI------VSITELKKT-------------DFLDTFSGLIIGGASGT 985 (1202)
T ss_pred CCCCeEEEE-eCC-CCCCHHHHHHHHHHcCCceEE------EEeccCCCC-------------CchhheEEEEEcCcCCC
Confidence 346789998 343 234677889999999998633 222344221 23678899999999865
Q ss_pred Cch--------------hHHHHHHHHHH-HcCCCEEEEeh-hHHHHH
Q 007533 373 RGV--------------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 403 (599)
Q Consensus 373 rg~--------------eg~i~aik~ar-e~~iP~LGICL-GmQll~ 403 (599)
... ....++++... +.+.+.||||- |+|+|+
T Consensus 986 ~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~ 1032 (1202)
T TIGR01739 986 LDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLL 1032 (1202)
T ss_pred CccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHH
Confidence 321 12333454444 45899999997 999995
|
This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model. |
| >cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.7e-05 Score=63.20 Aligned_cols=76 Identities=28% Similarity=0.358 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch----hHHHHHHHHH
Q 007533 310 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV----QGKILAAKYA 385 (599)
Q Consensus 310 aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~----eg~i~aik~a 385 (599)
.+.+..++|+.+++.+.+ +......... ......+|+|++|||+..+.. ..+++.++.+
T Consensus 13 ~~~~~~~~l~~~~~~~~~------~~~~~~~~~~-----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~ 75 (115)
T cd01653 13 ELASPLDALREAGAEVDV------VSPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75 (115)
T ss_pred hhHHHHHHHHHCCCeEEE------EcCCCCceec-----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHH
Confidence 467888999999855433 4433221100 024678999999999877543 5678888888
Q ss_pred HHcCCCEEEEehhHHHH
Q 007533 386 REHRIPYLGICLGMQVA 402 (599)
Q Consensus 386 re~~iP~LGICLGmQll 402 (599)
.++++|++|+|.|+|++
T Consensus 76 ~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 76 AAAGKPILGICLGAQLL 92 (115)
T ss_pred HHcCCEEEEECchhHhH
Confidence 89999999999999999
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende |
| >PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: |
Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=76.09 Aligned_cols=208 Identities=17% Similarity=0.256 Sum_probs=105.0
Q ss_pred CceEEEEEeecCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCcc-ccCCchhhhHHHHhc--cCCCEEEeCCC
Q 007533 294 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-EKENPDAYKAAWKLL--KGADGILVPGG 369 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~-DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~-~~~~p~~y~~a~~~L--~~~DGIlVPGG 369 (599)
..++|+|+ +--..+ +.=..+.+.|..... .|++.|+....-...+ ..+..++|..-++.+ ..+||+||+|.
T Consensus 33 rpL~I~Il-NLMP~K~~TE~Q~lrlL~~tpl----qv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGA 107 (298)
T PF04204_consen 33 RPLKIGIL-NLMPDKEETERQFLRLLSNTPL----QVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGA 107 (298)
T ss_dssp --EEEEEE----SSHHHHHHHHHHHCCSSSS-----EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---
T ss_pred cceEEEEE-ecccchHHHHHHHHHHhcCCCC----ceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCC
Confidence 46899999 333221 122244444444433 3455566433222111 111222333334444 58999999998
Q ss_pred CCCC-------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH-hccccccccCCCccccCCCCCCCeeeeCCCCCcCcC
Q 007533 370 FGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE-FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHM 441 (599)
Q Consensus 370 fG~r-------g~eg~i~aik~are~~iP~LGICLGmQll~ie-fgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~ 441 (599)
|=.. -++.+...+.|++++..+.|.||.|.|.+... +|-+...+ ++
T Consensus 108 PvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l--------------------~~------ 161 (298)
T PF04204_consen 108 PVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPL--------------------PE------ 161 (298)
T ss_dssp TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEE--------------------EE------
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccC--------------------CC------
Confidence 6442 34678899999999999999999999996544 33221111 00
Q ss_pred CCccccCceeeEE-ecCCchhhhccCCceeEEeeeeeee-eeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEE
Q 007533 442 GGTMRLGSRRTYF-QIKDCKSAKLYGNRTFIDERHRHRY-EVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIG 519 (599)
Q Consensus 442 GgtmrLG~~~v~l-~~~~s~l~~iyg~~~~I~erHrHrY-eVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvG 519 (599)
=.+|-++..+ .+.+++++++- . ....-| -|| +++.+.+. +..++.+++.+++.. +-++..+++.. +=
T Consensus 162 ---KlfGVf~~~~~~~~~pLl~Gfd-d--~f~~Ph-SR~t~i~~~~i~--~~~~L~vLa~s~~~G-~~l~~~~d~r~-vf 230 (298)
T PF04204_consen 162 ---KLFGVFEHRVLDPDHPLLRGFD-D--TFFAPH-SRYTEIDRDDIK--KAPGLEVLAESEEAG-VFLVASKDGRQ-VF 230 (298)
T ss_dssp ---EEEEEEEEEES-SS-GGGTT---S--EEEEEE-EEEEE--HHHHC--T-TTEEEEEEETTTE-EEEEEECCCTE-EE
T ss_pred ---cceeceeeeccCCCChhhcCCC-c--cccCCc-ccccCCCHHHHh--cCCCcEEEeccCCcc-eEEEEcCCCCE-EE
Confidence 0134455443 23336666653 1 222333 233 44444442 378999999987755 78888888874 57
Q ss_pred EcccCCCcCCCCCchHHHHHHHHHHhcch
Q 007533 520 VQFHPEYKSRPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 520 vQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 548 (599)
+|.|||+... -|-..+.....+.+
T Consensus 231 i~GH~EYd~~-----TL~~EY~RD~~~gl 254 (298)
T PF04204_consen 231 ITGHPEYDAD-----TLAKEYRRDLAKGL 254 (298)
T ss_dssp E-S-TT--TT-----HHHHHHHHHHHCT-
T ss_pred EeCCCccChh-----HHHHHHHHHHhCCC
Confidence 9999999765 46667766666554
|
Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A. |
| >cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.3e-05 Score=77.24 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=61.2
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHc-CCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~ha-G~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
...+|+++.-=....+.|. ++.++++.. |+++... .+.+ .+ . ..+.+.++|+|++|||--
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~----~~~~---~~-~----------~~~~l~~ad~I~l~GG~~ 91 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHL----HLFD---TE-D----------PLDALLEADVIYVGGGNT 91 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEE----eccC---cc-c----------HHHHHhcCCEEEECCchH
Confidence 4579999952222234444 788999999 8876432 1111 00 0 125789999999999621
Q ss_pred CC---ch--hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 372 NR---GV--QGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 372 ~r---g~--eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.+ .+ .++..+++.+.+++.|++|||.|||++.
T Consensus 92 ~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~ 128 (212)
T cd03146 92 FNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWF 128 (212)
T ss_pred HHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhC
Confidence 11 11 2466778877788999999999999994
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption. |
| >cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP) | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.7e-05 Score=69.48 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=53.3
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|++--..+....+...+.+.|+... . +.-+.++++... .|+ .++|.||+|||.-....
T Consensus 2 v~VY~g~g~~~~~~~~~~~~L~~~~-~------v~~~~~~~I~~~-----------~~~--~~ad~lVlPGGa~~~~~~~ 61 (114)
T cd03144 2 VLVYNGPGASPGSLKHLAELLRLYL-A------VSTVTADELAVG-----------PWE--SKTALLVVPGGADLPYCRA 61 (114)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhhcc-c------eeeecHHHHhcC-----------chh--hCCCEEEECCCChHHHHHH
Confidence 3443333434456667788887754 2 223555554321 232 58999999996333221
Q ss_pred ---hHHHHHHHHHHHcCCCEEEEehhHHHH
Q 007533 376 ---QGKILAAKYAREHRIPYLGICLGMQVA 402 (599)
Q Consensus 376 ---eg~i~aik~are~~iP~LGICLGmQll 402 (599)
.+ .++++...+++.|+||||+|.=++
T Consensus 62 L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 62 LNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred HHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 24 677888778899999999998877
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved. |
| >cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS) | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00021 Score=69.85 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=43.9
Q ss_pred ccCCCEEEeCCCCCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc
Q 007533 358 LKGADGILVPGGFGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 409 (599)
Q Consensus 358 L~~~DGIlVPGGfG~-------rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~ 409 (599)
...+||+||+|.+=. .-++.....+.|++++..|.||||.|+|++...+++-
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi 118 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGI 118 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCc
Confidence 578999999998643 1245688999999999999999999999998887764
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti |
| >PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea [] | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.8e-05 Score=72.10 Aligned_cols=51 Identities=31% Similarity=0.348 Sum_probs=42.4
Q ss_pred HhccCCCEEEeCCCCCCCc------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 356 KLLKGADGILVPGGFGNRG------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 356 ~~L~~~DGIlVPGGfG~rg------~eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
+.+.++|+|+||||+-... ..++...|+.+.+++.|++|||-|||+|.-.+
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 3578999999999976532 24678899999999999999999999997654
|
Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process |
| >cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00028 Score=56.30 Aligned_cols=75 Identities=29% Similarity=0.364 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch----hHHHHHHHHHH
Q 007533 311 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV----QGKILAAKYAR 386 (599)
Q Consensus 311 Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~----eg~i~aik~ar 386 (599)
+..+.++++..++.+.+ .+....... . .....++|+|++|||...... ...+..++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~----~~~~~~~~~--~-----------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~ 76 (92)
T cd03128 14 LASPLDALREAGAEVDV----VSPDGGPVE--S-----------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAA 76 (92)
T ss_pred eecHHHHHHhCCCEEEE----EeCCCCccc--c-----------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHH
Confidence 45678888888855433 222211110 0 024678999999999877543 45677787777
Q ss_pred HcCCCEEEEehhHHHH
Q 007533 387 EHRIPYLGICLGMQVA 402 (599)
Q Consensus 387 e~~iP~LGICLGmQll 402 (599)
+++.|++|+|.|+|++
T Consensus 77 ~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 77 AAGKPVLGICLGAQLL 92 (92)
T ss_pred HcCCEEEEEecccccC
Confidence 8899999999999874
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin |
| >TIGR01001 metA homoserine O-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=68.26 Aligned_cols=206 Identities=12% Similarity=0.166 Sum_probs=113.7
Q ss_pred CceEEEEEeecCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCcc-ccCCchhhhHHHHh--ccCCCEEEeCCC
Q 007533 294 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-EKENPDAYKAAWKL--LKGADGILVPGG 369 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~-DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~-~~~~p~~y~~a~~~--L~~~DGIlVPGG 369 (599)
.+++|+|+ .--..+ +.=..+++.|...... +++.|+....-...+ ..+..++|-.-++. -..+||+||+|.
T Consensus 34 rpL~I~IL-NLMP~K~~TE~Q~lRlL~ntplq----v~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGA 108 (300)
T TIGR01001 34 RPLEILIL-NLMPKKIETENQFLRLLSNSPLQ----VNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGA 108 (300)
T ss_pred cceeEEEE-ecCCccHHHHHHHHHHhcCCCCc----eEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCC
Confidence 46899999 343222 2333567777443333 344555433322211 11222233333333 368999999997
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCC
Q 007533 370 FGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 442 (599)
Q Consensus 370 fG~-------rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~G 442 (599)
|=. .-++...+.+.|++++-...|.||.|.|.+...+- |++.- .++++
T Consensus 109 PvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~y----GI~K~---------------~l~~K------ 163 (300)
T TIGR01001 109 PVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFY----GIPKY---------------TLPEK------ 163 (300)
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHc----CCCcc---------------ccCCc------
Confidence 533 12567889999999999999999999999755432 22210 01110
Q ss_pred CccccCceeeEEecCCchhhhccCCcee-EEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEc
Q 007533 443 GTMRLGSRRTYFQIKDCKSAKLYGNRTF-IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 521 (599)
Q Consensus 443 gtmrLG~~~v~l~~~~s~l~~iyg~~~~-I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQ 521 (599)
..|-++....+.+++++++- +... -..||. +++.+.+.. ..++.+++.+++.. +-++..+++..+ =+|
T Consensus 164 ---lfGVf~h~~~~~~pL~rGfd-d~f~~PhSR~t---~i~~~~i~~--~~~L~vla~s~e~G-~~l~~s~d~r~v-fi~ 232 (300)
T TIGR01001 164 ---LSGVYKHDIAPDSLLLRGFD-DFFLAPHSRYA---DFDAEDIDK--VTDLEILAESDEAG-VYLAANKDERNI-FVT 232 (300)
T ss_pred ---eEEeecCccCCCCccccCCC-CccccCCCCCC---CCCHHHHhc--CCCCeEEecCCCcc-eEEEEcCCCCEE-EEc
Confidence 01222211113324444442 1111 112332 355444432 47899999887655 778888887643 599
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHh
Q 007533 522 FHPEYKSRPGKPSPLFLGLIAAAC 545 (599)
Q Consensus 522 FHPE~ss~p~~p~pLF~~Fv~aa~ 545 (599)
-|||+.... |-..+.+...
T Consensus 233 GH~EYd~~T-----L~~EY~RD~~ 251 (300)
T TIGR01001 233 GHPEYDAYT-----LHQEYVRDIG 251 (300)
T ss_pred CCCccChhH-----HHHHHHHHHH
Confidence 999997653 4455554443
|
The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames. |
| >PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=97.25 E-value=3.7e-05 Score=71.59 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=46.3
Q ss_pred EeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHH
Q 007533 178 IHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLL 257 (599)
Q Consensus 178 ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L 257 (599)
|-+---|.|..-|=-+ .+.+|..+++.++|||+..+.+++|+++.+|..|++.++|+++.++|||+ +.++|
T Consensus 50 IlvfTyP~IGNyGv~~--------~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTRa-Lt~~l 120 (131)
T PF00988_consen 50 ILVFTYPLIGNYGVNE--------EDFESDRIHVKGLIVRELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTRA-LTRKL 120 (131)
T ss_dssp EEEESSSB--TT-B-G--------GG-SSSS--BSEEE-SB--SS---TT-SB-HHHHHHHTT-EEEESS-HHH-HHHHH
T ss_pred EEEEeccCCeEEcCCc--------ccCCCCceeeeeeeeccccCCCccccccCCHHHHHHHCCCeeeeCCcHHH-HHHHH
Confidence 3333446665444332 45999999999999999999999999999999999999999999999995 66888
Q ss_pred H--HHHH
Q 007533 258 R--KAHE 262 (599)
Q Consensus 258 ~--g~~~ 262 (599)
| |.|+
T Consensus 121 R~~G~m~ 127 (131)
T PF00988_consen 121 REKGSMK 127 (131)
T ss_dssp HHH--EE
T ss_pred HhcCCce
Confidence 8 7654
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F .... |
| >TIGR01382 PfpI intracellular protease, PfpI family | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0074 Score=57.11 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=38.0
Q ss_pred cCCCEEEeCCCCCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg---~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.++|+|+||||.+... .......++++.++++|+.|||.|.++|+-
T Consensus 59 ~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 107 (166)
T TIGR01382 59 EEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLIS 107 (166)
T ss_pred HHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHh
Confidence 3689999999976422 245788899999999999999999999863
|
The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs. |
| >cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.004 Score=62.80 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=43.8
Q ss_pred ccCCCEEEeCCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--ccccccc
Q 007533 358 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNL 413 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r--------------g~eg~i~aik~are~~iP~LGICLGmQll~ief--gr~Vlgl 413 (599)
++++|+|++|||++.. ..+..+..++.+.++++|+.+||-|-++|+-+. |+++.+.
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~kGr~vT~~ 151 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILGEGVEVTIG 151 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhccCCeEEcc
Confidence 5689999999998631 234678889999999999999999999987654 3455443
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis. |
| >PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0042 Score=62.75 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=41.2
Q ss_pred ccCCCEEEeCCCCCC--------------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 358 LKGADGILVPGGFGN--------------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 358 L~~~DGIlVPGGfG~--------------rg~eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
.+++|+|++|||+|. |..+....+++.+.++++|+..||-|-++|+-+.
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 568999999999874 2245688899999999999999999999986554
|
|
| >PRK05282 (alpha)-aspartyl dipeptidase; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0075 Score=61.64 Aligned_cols=105 Identities=20% Similarity=0.278 Sum_probs=70.8
Q ss_pred hhhHHHHHHHhhhcCCCCceEEEEEeecCCCc---chHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhh
Q 007533 277 PLLKEWTSRAEICDGLHEPVRIAMVGKYTGLS---DAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYK 352 (599)
Q Consensus 277 ~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~---DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~ 352 (599)
.-|..|..+...+-. ...||++| -+-+.. +.|. +..++++..|+++.. ++..+
T Consensus 15 ~~l~~~~~~~~~~~~--~~~~v~fI-PtAs~~~~~~~y~~~~~~af~~lG~~v~~------l~~~~-------------- 71 (233)
T PRK05282 15 GYLEHALPLIAELLA--GRRKAVFI-PYAGVTQSWDDYTAKVAEALAPLGIEVTG------IHRVA-------------- 71 (233)
T ss_pred chHHHHHHHHHHHHc--CCCeEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCEEEE------eccch--------------
Confidence 356777777776643 34689999 465432 3444 577888888887532 22110
Q ss_pred HHHHhccCCCEEEeCCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 353 AAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 353 ~a~~~L~~~DGIlVPGGfG~r-----g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
+..+.+.++|+|+++||--.+ .-.++..+++.+.++++|+.|+|.|.-+++-
T Consensus 72 d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~ 128 (233)
T PRK05282 72 DPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGP 128 (233)
T ss_pred hhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhc
Confidence 012568999999999984332 1135677888888999999999999988753
|
|
| >PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.26 Score=53.77 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=55.6
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
|+|.|--.=+....+-...+.+|+..-.. . ..+..|++..|..+ | | ..+++.+|+|||...+-
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p-~--y~V~~v~~~~l~~~-----p------w--~~~~~LlV~PGG~d~~y~ 64 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSP-H--YAVIPVTADELLNE-----P------W--QSKCALLVMPGGADLPYC 64 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCC-C--eEEEEeCHHHhhcC-----c------c--ccCCcEEEECCCcchHHH
Confidence 34555432232233444556666643211 1 23345666555321 1 3 46789999999875432
Q ss_pred --hhHH-HHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 375 --VQGK-ILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 375 --~eg~-i~aik~are~~iP~LGICLGmQll~ 403 (599)
..+. ...||...+++--+||||.|--.++
T Consensus 65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 65 RSLNGEGNRRIRQFVENGGGYLGICAGAYYAS 96 (367)
T ss_pred HhhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence 2333 6788888899999999999988764
|
It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase. |
| >cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.014 Score=55.19 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=37.3
Q ss_pred cCCCEEEeCCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 359 KGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 359 ~~~DGIlVPGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
..+|+|+||||++.. .....+..++.+.++++|+.|||-|-++|+
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La 108 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLI 108 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHH
Confidence 468999999998543 225577889999999999999999999985
|
A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. |
| >cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0081 Score=58.02 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=37.7
Q ss_pred cCCCEEEeCCCCCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg---~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..+|+|+||||++... .......++.+.++++|+.|||.|.++|+-
T Consensus 75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~ 123 (180)
T cd03169 75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAA 123 (180)
T ss_pred hHCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHH
Confidence 3689999999976422 245778888899999999999999999864
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.021 Score=55.39 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=64.0
Q ss_pred eEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCCCCCCcc--ccCCc-hhhhHHHHhccCCCEEEeCCC-C
Q 007533 296 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDLEDAT--EKENP-DAYKAAWKLLKGADGILVPGG-F 370 (599)
Q Consensus 296 v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~--~~~~p-~~y~~a~~~L~~~DGIlVPGG-f 370 (599)
.+|+++ -+....+. +..-.+.|+.+|..+.+. ..+.......... ....+ ..+..+ ..+++|+|++||| .
T Consensus 3 ~~i~i~-~~~g~e~~E~~~p~~~l~~ag~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~ydal~ipGG~~ 77 (188)
T COG0693 3 KKIAIL-LADGFEDLELIVPYDVLRRAGFEVDVA--SPEGKGKSVTSKRGGLVVADDKAFDDA--DAADYDALVIPGGDH 77 (188)
T ss_pred ceeEEE-ecCcceehhHhHHHHHHHHCCCeEEEE--ecCCCcceeecccCcceEecccccccC--CHhHCCEEEECCCcc
Confidence 467766 45555544 667888999999876442 1111100111000 00000 011110 1358999999999 7
Q ss_pred CCCch---hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 371 GNRGV---QGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 371 G~rg~---eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
|.... +..+..++++.++++|+..||-|-++|.
T Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~ 113 (188)
T COG0693 78 GPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLA 113 (188)
T ss_pred chhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHh
Confidence 76532 5688999999999999999999999985
|
|
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0086 Score=66.70 Aligned_cols=54 Identities=31% Similarity=0.447 Sum_probs=41.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV 67 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~ 67 (599)
||.|.|- |..|..||=+.++-+=++|..+|++|..-|- =.||= -=|||.||+|.
T Consensus 1 ~~~iMv~-GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--------QNMsL----Ns~it~~G~EI 54 (486)
T COG1492 1 MKAIMVQ-GTTSDAGKSFLVAGLCRILARRGYRVAPFKS--------QNMSL----NSAITPGGGEI 54 (486)
T ss_pred CCccEEE-eccCCcchhhhhhhhhHHHHhcCCccCCCch--------hhccc----ccEECCCCcEE
Confidence 4444443 6889999999999999999999999997763 23332 34888898885
|
|
| >cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.04 Score=50.97 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=60.3
Q ss_pred eEEEEEeecCCCcc-hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCc-cccCCch-hhhHHHHhccCCCEEEeCCCCCC
Q 007533 296 VRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDA-TEKENPD-AYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 296 v~IaiVGkY~~l~D-aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~-~~~~~p~-~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
.||+++- |..... .+.+..+.|+.+++++.+ ...+...+... ...-.++ .|+. .....+|+|+||||.+.
T Consensus 2 ~~v~ill-~~g~~~~e~~~~~~~~~~a~~~v~v----vs~~~~~v~s~~g~~i~~~~~l~~--~~~~~~D~liVpGg~~~ 74 (142)
T cd03132 2 RKVGILV-ADGVDAAELSALKAALKAAGANVKV----VAPTLGGVVDSDGKTLEVDQTYAG--APSVLFDAVVVPGGAEA 74 (142)
T ss_pred CEEEEEE-cCCcCHHHHHHHHHHHHHCCCEEEE----EecCcCceecCCCcEEecceeecC--CChhhcCEEEECCCccC
Confidence 3577763 544432 366888999999876543 11111111000 0000000 1110 01235899999998764
Q ss_pred C----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 373 R----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 373 r----g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
. .....+..++.+.++++|+.+||-|-.+|+-
T Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~ 110 (142)
T cd03132 75 AFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEA 110 (142)
T ss_pred HHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHH
Confidence 2 3456778888888899999999999998853
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.053 Score=51.69 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=80.3
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCC
Q 007533 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDN 86 (599)
Q Consensus 7 tggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~l~~~~ 86 (599)
..+--.|.||=.+|+.++..|...|+||-.+-.||--.. .. +++
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~----~~------------------------~~~-------- 47 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS----IP------------------------KMW-------- 47 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCC----ch------------------------HHH--------
Confidence 334457899999999999999999999999998885421 10 000
Q ss_pred cccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHHHHHHHh
Q 007533 87 NITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQF 166 (599)
Q Consensus 87 n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ea~rq~ 166 (599)
+ -|...+.++++++... ...+|+|||-.++.++|. .+.+++
T Consensus 48 ----------------~----------~~~~~~~l~~~~~~~~-------~~~yD~VIiD~pp~~~~~----~~~~~~-- 88 (169)
T cd02037 48 ----------------R----------GPMKMGAIKQFLTDVD-------WGELDYLVIDMPPGTGDE----HLTLAQ-- 88 (169)
T ss_pred ----------------h----------CcchHHHHHHHHHHhh-------cCCCCEEEEeCCCCCcHH----HHHHHh--
Confidence 0 0122345666666553 257999999999998761 122221
Q ss_pred hhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecC
Q 007533 167 SYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRST 219 (599)
Q Consensus 167 ~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~ 219 (599)
....+..++|. ..+..--+-+...++.|++.|+...++|+.-.
T Consensus 89 --------~~~ad~viiV~--~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~ 131 (169)
T cd02037 89 --------SLPIDGAVIVT--TPQEVALDDVRKAIDMFKKVNIPILGVVENMS 131 (169)
T ss_pred --------ccCCCeEEEEE--CCchhhHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 01112333332 23444445566777888899998887776443
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.26 Score=58.19 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=59.5
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
..+|+||+-. +....+..+.-|+..||++..- |.-.||-... ..|+++-||..+|||.+.
T Consensus 1057 ~~PkVAilRE--eGvNg~rEMa~af~~AgF~~~D------VtmtDlL~G~------------~~ld~frGlaf~GGFSYa 1116 (1320)
T KOG1907|consen 1057 TAPKVAILRE--EGVNGDREMAAAFYAAGFETVD------VTMTDLLAGR------------HHLDDFRGLAFCGGFSYA 1116 (1320)
T ss_pred CCCceEEeec--cccccHHHHHHHHHHcCCceee------eeeehhhcCc------------eeHhHhcceeeecCcchH
Confidence 3569999943 3455799999999999998621 2223443221 247889999999999653
Q ss_pred -------ch-------hHHHHHHHHH-HHcCCCEEEEehhHHHHHH
Q 007533 374 -------GV-------QGKILAAKYA-REHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 374 -------g~-------eg~i~aik~a-re~~iP~LGICLGmQll~i 404 (599)
|+ +....-.... +..+.=-||||-|.|+|+.
T Consensus 1117 DvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~ 1162 (1320)
T KOG1907|consen 1117 DVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSR 1162 (1320)
T ss_pred hhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHH
Confidence 22 2333323322 2345667999999999974
|
|
| >cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.023 Score=57.91 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=40.2
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 358 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
.+++|+|++|||.|. +..+....+++.+.++++|+-.||-|-++|.-+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 568999999999764 234567889999999999999999999988643
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer. |
| >PRK00090 bioD dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.059 Score=53.57 Aligned_cols=166 Identities=18% Similarity=0.204 Sum_probs=91.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCC
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~l~ 83 (599)
||||| .=++.||=.+++.|.+.|+.+|++|-..| |.++|--... .|=|.--..+++++...
T Consensus 2 i~I~~-t~t~~GKT~vs~~L~~~l~~~g~~v~~~K-------------Pv~~g~~~~~-----~~~d~~~~~~~~~~~~~ 62 (222)
T PRK00090 2 LFVTG-TDTDVGKTVVTAALAQALREAGYSVAGYK-------------PVQSGCEETD-----RNGDALALQRLSGLPLD 62 (222)
T ss_pred EEEEe-CCCCcCHHHHHHHHHHHHHHcCCceEEEe-------------eEecCCCCCC-----CcHHHHHHHHHcCCCCC
Confidence 56654 56999999999999999999999998865 5666531110 12233335555544322
Q ss_pred CCCcccchHhhHHH----HhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccccc--ccc
Q 007533 84 RDNNITTGKIYQSV----IDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI--ESM 157 (599)
Q Consensus 84 ~~~n~ttgkiy~~v----i~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdi--es~ 157 (599)
. ...++-.|+.. +..++.| . +--.+.|++.+++++ .++|+||||-.|.+.+- .++
T Consensus 63 ~--~~~~~~~~~~~~sp~~a~~~~~----~-----~~~~~~i~~~~~~l~--------~~~D~viIEg~gg~~~~~~~~~ 123 (222)
T PRK00090 63 Y--EDVNPYRFEEPLSPHLAAALEG----V-----AIDLEKISAALRRLA--------QQYDLVLVEGAGGLLVPLTEDL 123 (222)
T ss_pred h--hhcCceeeCCCCCHHHHHHHhC----C-----CCCHHHHHHHHHHHH--------hhCCEEEEECCCceeccCCCCC
Confidence 1 11122222111 1111121 1 123467888887764 46899999988766432 111
Q ss_pred hHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCC
Q 007533 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTV 220 (599)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~ 220 (599)
-..+-+++ .+ -.+..|.- + ..+. ..-+.-+++.++..|+...++|+....
T Consensus 124 ~~adl~~~----l~-~pvilV~~---~---~~~~--i~~~~~~i~~l~~~~~~i~gvIlN~~~ 173 (222)
T PRK00090 124 TLADLAKQ----LQ-LPVILVVG---V---KLGC--INHTLLTLEAIRARGLPLAGWVANGIP 173 (222)
T ss_pred cHHHHHHH----hC-CCEEEEEC---C---CCcH--HHHHHHHHHHHHHCCCCeEEEEEccCC
Confidence 12222333 32 12333321 1 1122 224677788888889988888876443
|
|
| >PRK11574 oxidative-stress-resistance chaperone; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.17 Score=49.49 Aligned_cols=100 Identities=12% Similarity=0.122 Sum_probs=58.8
Q ss_pred eEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCC---CCCC-ccccCCchhhhHHHHh--ccCCCEEEeCC
Q 007533 296 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPAC---DLED-ATEKENPDAYKAAWKL--LKGADGILVPG 368 (599)
Q Consensus 296 v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~---~le~-~~~~~~p~~y~~a~~~--L~~~DGIlVPG 368 (599)
.||+|+ =|..+.+. +....+.|+.+|+++.+- -+... .+.. ....-.++ ...+. ..++|.|+|||
T Consensus 3 ~~~~il-~~~g~~~~e~~~p~~~l~~ag~~v~~~----s~~~~~~~~v~ss~G~~v~~d---~~l~~~~~~~~D~l~ipG 74 (196)
T PRK11574 3 ASALVC-LAPGSEETEAVTTIDLLVRGGIKVTTA----SVASDGNLEITCSRGVKLLAD---APLVEVADGDFDVIVLPG 74 (196)
T ss_pred ceEEEE-eCCCcchhhHhHHHHHHHHCCCeEEEE----EccCCCCceEEcCCCCEEeCC---CCHHHCCCCCCCEEEECC
Confidence 356666 35555443 667788888888765431 11110 0000 00000010 01122 25799999999
Q ss_pred CCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 369 GFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 369 GfG~r----g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
|++.. ..+..+..++.+.++++++.+||-|-.++.
T Consensus 75 G~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 75 GIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred CCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 97432 234578889999999999999999998753
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.18 Score=51.80 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=34.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+.|+|+|- +|.||-.++..+...|+..|.+|..+.+||-
T Consensus 3 ~~i~v~G~--~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGT--AGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECC--CCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 45556655 9999999999999999999999999999984
|
|
| >PRK12374 putative dithiobiotin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.18 Score=50.92 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=98.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||-|||||- =.+.||=.+++.|.+.|+.+|++|..+| |.++|-.- + +++..|-|.--+.+..+.
T Consensus 2 ~~~ifIt~t-~t~vGKT~vt~~L~~~l~~~g~~v~~~K-------------Pi~~g~~~-~-~~~~~~~D~~~l~~~~~~ 65 (231)
T PRK12374 2 LKRFFITGT-DTSVGKTVVSRALLQALASQGKTVAGYK-------------PVAKGSKE-T-PEGLRNKDALVLQSVSSI 65 (231)
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEC-------------ccccCCcc-C-CCCCchHHHHHHHHhcCC
Confidence 467888874 4899999999999999999999998877 78888432 2 233445444445555555
Q ss_pred CCCCCC-c---ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc--c
Q 007533 81 KLTRDN-N---ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--I 154 (599)
Q Consensus 81 ~l~~~~-n---~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgd--i 154 (599)
+.+-+. | ++.. ...++.+ +.+ -.++|.+++++++ .+.|++|||=-|-+.. -
T Consensus 66 ~~~~~~~~p~~~~~~------~a~~~~~-------~~i--~~~~i~~~~~~l~--------~~~D~VlVEGaGgl~~p~~ 122 (231)
T PRK12374 66 ELPYEAVNPIALSEE------ESSVAHS-------CPI--NYTLMSNGLANLS--------EKVDHVVVEGTGGWRSLMN 122 (231)
T ss_pred CCCHHhccCeecCCC------cChHHcC-------CcC--CHHHHHHHHHHHH--------hhCCEEEEECCCCcceecc
Confidence 433111 1 1111 1111211 111 2357888887764 4789999997762221 0
Q ss_pred ccchHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCC
Q 007533 155 ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA 221 (599)
Q Consensus 155 es~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~ 221 (599)
+...+.+.++++ +.. +.+| + =...|. .--|.-+++.|++.|+..-++|+-...+
T Consensus 123 ~~~~~~d~~~~~----~~p-vilV--~----~~~lg~--in~~lLt~~~l~~~~~~~~gvV~N~~~~ 176 (231)
T PRK12374 123 DLRPLSEWVVQE----QLP-VLMV--V----GIQEGC--INHALLTAQAIANDGLPLIGWVANRINP 176 (231)
T ss_pred CcccHHHHHHHh----CCC-EEEE--E----CCCcCh--HHHHHHHHHHHHhCCCcEEEEEEeCccC
Confidence 112233444442 211 1111 1 001233 2355667788999999999999876544
|
|
| >PRK04155 chaperone protein HchA; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.054 Score=57.07 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=39.2
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.+++|+|++|||.|. +..+...++++++.++++|+..||-|-++|.
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll 194 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALL 194 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 468999999999765 3446688999999999999999999998764
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.11 Score=43.18 Aligned_cols=33 Identities=36% Similarity=0.513 Sum_probs=29.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
|+++|.- |.||-.+++.+...|+..|++|..++
T Consensus 2 ~~~~g~~--G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG--GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5677666 99999999999999999999999888
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.03 Score=52.40 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=36.8
Q ss_pred ccCCCEEEeCCCCCC----Cch-hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGN----RGV-QGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~-eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..++|+|++|||.+. +.. +.....++++.++++|+.+||-|-.+|+.
T Consensus 35 ~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~ 86 (147)
T PF01965_consen 35 PSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAA 86 (147)
T ss_dssp GGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHH
T ss_pred hhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhc
Confidence 457999999999873 222 56888999999999999999999977753
|
Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C .... |
| >cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.28 Score=48.81 Aligned_cols=106 Identities=17% Similarity=0.055 Sum_probs=63.8
Q ss_pred HHHHHHhhhcCCCCceEEEEEeecCCC-cch-HHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc
Q 007533 281 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDA-YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358 (599)
Q Consensus 281 ~W~~l~~~~~~~~~~v~IaiVGkY~~l-~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L 358 (599)
-++.+..... ....+|+++. .... .+. ...+.++++..|+.... +.+++. .. + ....+.+
T Consensus 17 ~~~~~~~~~~--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~~~---~~~~~~--~~------~----~~~~~~l 78 (210)
T cd03129 17 ILQDFLARAG--GAGARVLFIP-TASGDRDEYGEEYRAAFERLGVEVVH---LLLIDT--AN------D----PDVVARL 78 (210)
T ss_pred HHHHHHHHcC--CCCCeEEEEe-CCCCChHHHHHHHHHHHHHcCCceEE---EeccCC--CC------C----HHHHHHH
Confidence 3444444332 2357899994 4332 122 34678889999987643 222222 10 0 1234679
Q ss_pred cCCCEEEeCCCCCCCc---h--hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFGNRG---V--QGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg---~--eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.++|+|+++||--.+- + .+...+++....++.|+.|+|.|..++.-
T Consensus 79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~ 129 (210)
T cd03129 79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGE 129 (210)
T ss_pred hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhh
Confidence 9999999999732221 1 12444555555589999999999999853
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.31 Score=52.49 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=50.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-------CCCCCCc-cccceEEEccCCccc
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-------DAGTMSP-FEHGEVFVLDDGGEV 67 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~-------d~gtmsp-~~hgevfv~~dg~e~ 67 (599)
.|-|||- +|-||=.+...+...|+.+|++|..+.+||.-.+ |.-.|.. .+|..||+-..++..
T Consensus 58 ~igi~G~--~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~ 128 (332)
T PRK09435 58 RIGITGV--PGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSG 128 (332)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcc
Confidence 4667775 8999999999999999999999999999998776 5555653 366667777766544
|
|
| >cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.14 Score=49.29 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=39.8
Q ss_pred hccCCCEEEeCCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 357 LLKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.+.++|.|+||||.+.. ..+..++.++.+.+++.++.+||-|-++|+-
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 111 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAE 111 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 35688999999997653 3466888899888899999999999998853
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31) | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.11 Score=52.94 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=38.8
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.+++|+|++|||.|. +..+...++++++.++++|+-.||-|-+++.
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~ 143 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFL 143 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHH
Confidence 468999999999664 3346678899999999999999999998764
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer. |
| >COG3442 Predicted glutamine amidotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.049 Score=55.05 Aligned_cols=154 Identities=24% Similarity=0.278 Sum_probs=81.8
Q ss_pred cCCCEEEeCCCCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh----ccccc--cccCCCccccCCCCC
Q 007533 359 KGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF----ARSVL--NLRDANSTEFDPNTK 426 (599)
Q Consensus 359 ~~~DGIlVPGGfG~r------g~eg~i~aik~are~~iP~LGICLGmQll~ief----gr~Vl--gl~dA~S~Ef~~~~~ 426 (599)
+++|-+++.||-... ....+...++.+.++++|+|.||-|.|+|.-.| |.++- |+-|..+.. +
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~yY~~a~G~ri~GlGiLd~~T~~--~--- 125 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQYYETASGTRIDGLGILDHYTEN--P--- 125 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccceeecCCCcEeecccceeeeecc--c---
Confidence 578988887764332 112355788999999999999999999997543 23332 222221110 0
Q ss_pred CCeeeeCCCCCcCcCCCccc-cCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCC-
Q 007533 427 NPCVIFMPEGSKTHMGGTMR-LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ- 504 (599)
Q Consensus 427 ~~vi~~mpe~~~~~~Ggtmr-LG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~- 504 (599)
.+-| .|. +.+.+ ++....++.+-.=.|.|+-|=...|+ .++-|-.+.|.-.++.
T Consensus 126 ----------------~~~R~IGd--iv~~~--~~~~e~~~et~~GFENH~GrT~L~~d----~~pLG~Vv~G~GNn~eD 181 (250)
T COG3442 126 ----------------QTKRFIGD--IVIEN--TLAGEEFGETLVGFENHGGRTYLGPD----VKPLGKVVYGYGNNGED 181 (250)
T ss_pred ----------------cccceeee--EEeec--ccchHHhCCeeeeeecCCCceecCCC----CccceeEEEccCCCccc
Confidence 0111 111 22222 11112222121114566655333332 3355666666543221
Q ss_pred eEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 007533 505 RMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQ 547 (599)
Q Consensus 505 ~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 547 (599)
--|++-+++ .+|+=||==..|+- | .|=..|+..|++.
T Consensus 182 ~~eG~~ykn---~~aTY~HGP~L~rN--p-~LAd~Ll~tAl~~ 218 (250)
T COG3442 182 GTEGAHYKN---VIATYFHGPILSRN--P-ELADRLLTTALEK 218 (250)
T ss_pred cccceeeee---eEEEeecCccccCC--H-HHHHHHHHHHHHH
Confidence 146666654 67999996666553 1 3556677777663
|
|
| >cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.12 Score=52.14 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=39.2
Q ss_pred ccCCCEEEeCCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r----g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
++++|+|+||||.+.. ..+.....++.+.++++|+.+||-|-++|+-
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ 138 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLN 138 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHh
Confidence 4579999999997642 3356888999999999999999999998864
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different |
| >cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.15 Score=48.78 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=38.2
Q ss_pred cCCCEEEeCCCCCC--CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFGN--RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG~--rg~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.++|.|+||||+.. ...+...+.++.+.+++.++.+||-|-++|+-
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 106 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALAR 106 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 57899999999753 23356788899999999999999999999864
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.2 Score=48.76 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=38.1
Q ss_pred ccCCCEEEeCCCCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r------g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..++|.|+||||.+.. ..+..+..++.+.+++.++.+||-|..+|+-
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 119 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAE 119 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHH
Confidence 4678999999986542 2355778888888899999999999999853
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1 | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.17 Score=47.40 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=37.8
Q ss_pred cCCCEEEeCCCCC-CC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFG-NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG-~r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.++|.|+||||.+ .. ..+..+..++.+.++++++.+||-|-.+|+-
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~ 108 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK 108 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHH
Confidence 6899999999973 32 2355778888888999999999999999864
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly |
| >PRK05632 phosphate acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.83 Score=53.68 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=33.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
||-|||+| .=++.||=.++..|...|+.+|++|...|
T Consensus 2 ~k~l~I~~-T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLAP-TGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 57888884 56999999999999999999999999999
|
|
| >TIGR01968 minD_bact septum site-determining protein MinD | Back alignment and domain information |
|---|
Probab=92.39 E-value=2.6 Score=42.28 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=34.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|-|.|+++ =-|.||=.+|+.++..|..+|+||-.+-.||-
T Consensus 2 ~ii~v~s~-kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 2 RVIVITSG-KGGVGKTTTTANLGTALARLGKKVVLIDADIG 41 (261)
T ss_pred eEEEEecC-CCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 45666543 46899999999999999999999999999994
|
This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.84 Score=48.07 Aligned_cols=46 Identities=33% Similarity=0.518 Sum_probs=39.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG 48 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~g 48 (599)
++.|.|+|. .|-||=.++..++..|..+|++|..+.+||+-+.-.|
T Consensus 34 ~~~i~i~G~--~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~ 79 (300)
T TIGR00750 34 AHRVGITGT--PGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGG 79 (300)
T ss_pred ceEEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchh
Confidence 367888875 8999999999999999999999999999997544333
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=2.3 Score=45.95 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=35.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+.|.++| ..|.||=.+++.++..|+..|++|..+-.|+|
T Consensus 141 ~vi~~~G--~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVG--VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4678888 88999999999999999999999999888877
|
|
| >cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.54 Score=48.33 Aligned_cols=39 Identities=28% Similarity=0.540 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|+||++|. .|.||=.+|+.++..+...|.||-.+-.||-
T Consensus 1 ~~~~~~gk--gG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGK--GGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECC--CCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 57888886 9999999999999999999999999999994
|
This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity. |
| >TIGR01383 not_thiJ DJ-1 family protein | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.3 Score=46.65 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=37.6
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..++|.|+||||.+. +..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 111 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLA 111 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHh
Confidence 567999999998642 12345778888888899999999999999864
|
This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus. |
| >PRK11249 katE hydroperoxidase II; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.73 Score=54.52 Aligned_cols=104 Identities=18% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCceEEEEEeecCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCCCC---ccccCCchhhhHHHHhccCCCEEEeCC
Q 007533 293 HEPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLED---ATEKENPDAYKAAWKLLKGADGILVPG 368 (599)
Q Consensus 293 ~~~v~IaiVGkY~~l~-DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~---~~~~~~p~~y~~a~~~L~~~DGIlVPG 368 (599)
-++.||||+- +.... ..+..+.++|+.+|+.+.+ .......+.. ..+..+ ..|..+ ....+|+|+|||
T Consensus 595 ~~gRKIaILV-aDG~d~~ev~~~~daL~~AGa~V~V----VSp~~G~V~~s~G~~I~aD-~t~~~~--~Sv~FDAVvVPG 666 (752)
T PRK11249 595 IKGRKVAILL-NDGVDAADLLAILKALKAKGVHAKL----LYPRMGEVTADDGTVLPIA-ATFAGA--PSLTFDAVIVPG 666 (752)
T ss_pred ccccEEEEEe-cCCCCHHHHHHHHHHHHHCCCEEEE----EECCCCeEECCCCCEEecc-eeeccC--CccCCCEEEECC
Confidence 3567899884 44443 3477899999999986543 2211111100 000000 011100 012589999999
Q ss_pred CCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 369 GFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 369 GfG~r----g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
|.... .....+..++.+.++.+|+..||-|.++|.-
T Consensus 667 G~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaa 706 (752)
T PRK11249 667 GKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAA 706 (752)
T ss_pred CchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHh
Confidence 86432 2235778888899999999999999999963
|
|
| >cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.31 Score=46.67 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=36.9
Q ss_pred ccCCCEEEeCCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
...+|+|+||||.+.. ..+..+..++.+.++++|+.+||-|.-+|+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La 108 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLA 108 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHH
Confidence 4579999999997643 235577788888888999999999997774
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=90.94 E-value=1.3 Score=44.35 Aligned_cols=41 Identities=32% Similarity=0.495 Sum_probs=35.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
||.|.|+++ =.|.||=.+|+-++..|..+|+||-.|-.||.
T Consensus 1 m~iI~v~s~-KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIVGV-KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEEeC-CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 676766543 46889999999999999999999999999996
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=3.6 Score=45.93 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~-g~~v~~~k~dpy 42 (599)
+.|+++| ..|.||=.+++.++..|+.. |.+|..+-.|+|
T Consensus 101 ~vI~~vG--~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVG--LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEEC--CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4577887 89999999999999999998 999999999997
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=90.81 E-value=5 Score=41.93 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+.|.++| ..|.||=.+++.++..|+..|.+|.++-.|+|
T Consensus 73 ~vi~l~G--~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVG--VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 6788885 89999999999999999999999999999996
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=1.1 Score=43.59 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=30.2
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 11 ~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
=-|.||=.+|+.++..|..+|++|.+|-+||.-
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 346799999999999999999999999999974
|
|
| >cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.56 Score=45.22 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=38.4
Q ss_pred ccCCCEEEeCCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r--g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
..++|.|+||||++.. ..+..+..++.+.+++..+.+||-|..+++
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La 109 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLA 109 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHH
Confidence 4578999999986643 345678889998899999999999999985
|
A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee |
| >PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.37 Score=45.62 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=37.2
Q ss_pred hccCCCEEEeCCCCC---CCchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 357 LLKGADGILVPGGFG---NRGVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG---~rg~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
....+|.|+||||++ ....+..+..++.+..++.++.+||-|..+++-
T Consensus 58 ~~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 108 (166)
T PF13278_consen 58 DAPDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAE 108 (166)
T ss_dssp CCSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHH
T ss_pred hcccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhh
Confidence 356899999999998 123355677787777889999999999999964
|
... |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=89.54 E-value=2.1 Score=40.46 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=33.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
|.++|. +|-||=.++..++..|+.+|.+|..+..||..
T Consensus 2 i~~~G~--~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 2 IGITGV--PGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEEECC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 455664 78999999999999999999999999999843
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=88.85 E-value=1.6 Score=43.54 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=30.7
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 9 gv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+-=.|.||=.+|+.++..|..+|++|-.+.+||.
T Consensus 7 ~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 7 SGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3346789999999999999999999999999994
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=86.94 E-value=7.8 Score=39.43 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=35.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
||.|-|+ +-==|.||=.+|..++..|..+|++|.++-.||--|.
T Consensus 1 M~iI~v~-n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~ 44 (231)
T PRK13849 1 MKLLTFC-SFKGGAGKTTALMGLCAALASDGKRVALFEADENRPL 44 (231)
T ss_pred CeEEEEE-CCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Confidence 5655443 2334679999999999999999999999999998653
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=86.85 E-value=8 Score=43.08 Aligned_cols=143 Identities=19% Similarity=0.239 Sum_probs=87.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~ 81 (599)
+.|.+.|- .|.||=.+++.|+..|..+|++|..+-.|||- +|..+-..
T Consensus 242 ~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R---iaAvEQLk--------------------------- 289 (436)
T PRK11889 242 QTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR---IGTVQQLQ--------------------------- 289 (436)
T ss_pred cEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc---hHHHHHHH---------------------------
Confidence 35666665 99999999999999999999999999999885 12111111
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHHH
Q 007533 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (599)
Q Consensus 82 l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~e 161 (599)
.|. +-+|-.|-++. -.+++++.|..++. ..+.|+|||...|.-- -....++
T Consensus 290 -----------~ya---------e~lgipv~v~~-d~~~L~~aL~~lk~------~~~~DvVLIDTaGRs~--kd~~lm~ 340 (436)
T PRK11889 290 -----------DYV---------KTIGFEVIAVR-DEAAMTRALTYFKE------EARVDYILIDTAGKNY--RASETVE 340 (436)
T ss_pred -----------HHh---------hhcCCcEEecC-CHHHHHHHHHHHHh------ccCCCEEEEeCccccC--cCHHHHH
Confidence 011 11332332222 24677788877752 2368999999988843 2344566
Q ss_pred HHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEE
Q 007533 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (599)
Q Consensus 162 a~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~ 216 (599)
.++++.....+..++++ +++ -.|.+-....++.++. +.+|.+|.
T Consensus 341 EL~~~lk~~~PdevlLV-------LsA--Ttk~~d~~~i~~~F~~--~~idglI~ 384 (436)
T PRK11889 341 EMIETMGQVEPDYICLT-------LSA--SMKSKDMIEIITNFKD--IHIDGIVF 384 (436)
T ss_pred HHHHHHhhcCCCeEEEE-------ECC--ccChHHHHHHHHHhcC--CCCCEEEE
Confidence 66666655544433222 433 2333344556666665 44566665
|
|
| >PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=8.5 Score=39.29 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|-|-|+ +-=.|.||=.+|+.++..|..+|.+|-.+-+||.
T Consensus 3 kviav~-s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 3 RIIVVT-SGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred eEEEEE-eCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 555555 3457899999999999999999999999999996
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=86.36 E-value=2.8 Score=36.29 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=32.6
Q ss_pred EeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 6 VTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 6 vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+-.|-=.|.||=.+|+.++..|..+|.+|-.+-.||.
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3344556899999999999999999999999999998
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >TIGR02069 cyanophycinase cyanophycinase | Back alignment and domain information |
|---|
Probab=86.15 E-value=3.1 Score=42.98 Aligned_cols=108 Identities=19% Similarity=0.097 Sum_probs=65.2
Q ss_pred HHHHHHhhhcCCCCceEEEEEeecCCC-cchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc
Q 007533 281 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358 (599)
Q Consensus 281 ~W~~l~~~~~~~~~~v~IaiVGkY~~l-~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L 358 (599)
-|+.+++..... ..||+++- ..+. .+.|. ...++|+..|+.....+ -+.+. +.. .+| +..+.+
T Consensus 16 i~~~~~~lag~~--~~rI~~ip-tAS~~~~~~~~~~~~~~~~lG~~~v~~l---~i~~r--~~a---~~~----~~~~~l 80 (250)
T TIGR02069 16 ILREFVSRAGGE--DAIIVIIT-SASEEPREVGERYITIFSRLGVKEVKIL---DVRER--EDA---SDE----NAIALL 80 (250)
T ss_pred HHHHHHHHhCCC--CceEEEEe-CCCCChHHHHHHHHHHHHHcCCceeEEE---ecCCh--HHc---cCH----HHHHHH
Confidence 455565554332 35899994 3221 22333 56778888998632222 22211 100 111 123568
Q ss_pred cCCCEEEeCCCCCCCc-----hhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 359 KGADGILVPGGFGNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg-----~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.++|+|++.||--.+- -.+...+++.+.+++.|+.|+-.|.-+|+
T Consensus 81 ~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 81 SNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred hhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 9999999999843221 13456778888888999999999998774
|
This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. |
| >PRK09393 ftrA transcriptional activator FtrA; Provisional | Back alignment and domain information |
|---|
Probab=86.09 E-value=1.3 Score=46.63 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=37.8
Q ss_pred hccCCCEEEeCCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 357 LLKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~r--g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
....+|.|+||||.+.. .....+..++.+.+++.++.|||-|--+|+-
T Consensus 72 ~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 121 (322)
T PRK09393 72 LLDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAA 121 (322)
T ss_pred ccCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHh
Confidence 46689999999986532 2345777888888889999999999988753
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=85.98 E-value=5.9 Score=44.21 Aligned_cols=141 Identities=23% Similarity=0.338 Sum_probs=82.3
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~-~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~ 81 (599)
.|+++| ..|.||=.+++.++..|+ .+|.+|..+-+|+|--- .. +
T Consensus 101 vi~~vG--~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~---a~---~--------------------------- 145 (428)
T TIGR00959 101 VILMVG--LQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA---AI---E--------------------------- 145 (428)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH---HH---H---------------------------
Confidence 455555 579999999999999987 68999999999995210 00 0
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHH-HHHHHHHhcccCCCCCCCCcEEEEeeCccccccccch
Q 007533 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEI-QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 158 (599)
Q Consensus 82 l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit--~~i-~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~p 158 (599)
+-++.+...|-.+...+.-. .+| ++.++.+. ...+|+|||...|-.. +.. .
T Consensus 146 -----------------QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~-------~~~~DvVIIDTaGr~~-~d~-~ 199 (428)
T TIGR00959 146 -----------------QLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK-------ENGFDVVIVDTAGRLQ-IDE-E 199 (428)
T ss_pred -----------------HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH-------hcCCCEEEEeCCCccc-cCH-H
Confidence 11122223333333333211 133 34444442 3568999999999865 222 3
Q ss_pred HHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcC--CCcccEEEEe
Q 007533 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ--GLTPNILACR 217 (599)
Q Consensus 159 f~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~--Gi~pd~iv~R 217 (599)
-++.++++..-+.++.+++| +.+. | .|.+++..+.. .+..+.+|+-
T Consensus 200 l~~eL~~i~~~~~p~e~lLV-------vda~----t--gq~~~~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 200 LMEELAAIKEILNPDEILLV-------VDAM----T--GQDAVNTAKTFNERLGLTGVVLT 247 (428)
T ss_pred HHHHHHHHHHhhCCceEEEE-------Eecc----c--hHHHHHHHHHHHhhCCCCEEEEe
Confidence 45777888877766655333 3322 2 25555444332 3455677653
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=85.00 E-value=6 Score=39.46 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=34.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
++++| -.|.||=.+++.++..+...|+||-.+-.||--+
T Consensus 2 ~~~~g--~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~ 40 (217)
T cd02035 2 IFFTG--KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN 40 (217)
T ss_pred EEEeC--CCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 34444 6899999999999999999999999999998765
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >TIGR00347 bioD dethiobiotin synthase | Back alignment and domain information |
|---|
Probab=84.90 E-value=4.4 Score=38.25 Aligned_cols=153 Identities=21% Similarity=0.282 Sum_probs=80.6
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCCccc
Q 007533 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNIT 89 (599)
Q Consensus 10 v~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~l~~~~n~t 89 (599)
.-.|.||=.+|+.+.+.|+.+|+||-.+| |.+||-- . .|-|.-.-.+++.... +.+..
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~k-------------P~~~~~~-----~--~d~d~~~i~~~~~~~~--~~~~~ 62 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYYK-------------PVQTGIE-----K--TNSDALLLQNISGTAL--DWDEV 62 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEE-------------eeeeCCC-----C--CchHHHHHHHHcCCCC--chhcc
Confidence 46789999999999999999999998854 5666520 0 1222111112221111 11111
Q ss_pred chHhhH-----HHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHHH--H
Q 007533 90 TGKIYQ-----SVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE--A 162 (599)
Q Consensus 90 tgkiy~-----~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~e--a 162 (599)
.+-.|. ++....+ + + |....+|++.+++++ .+.|++|||-.|.+.. |+.+ .
T Consensus 63 ~~~~~~~~~~p~~~~~~~-~----~-----~~~~~~i~~~~~~l~--------~~~D~viid~~g~~~~----~~~~~~~ 120 (166)
T TIGR00347 63 NPYAFALPLSPHIAADQE-G----R-----PIDLEELSKHLRTLE--------QKYDFVLVEGAGGLCV----PITEEYT 120 (166)
T ss_pred CCeeeCCCCChHHHHHHh-C----C-----CCCHHHHHHHHHHHH--------hcCCEEEEEcCCcccc----CCCCCCc
Confidence 110010 1111110 0 0 223356777887764 3689999999885443 2111 1
Q ss_pred HHHhhhHcCCCCEEEEeeeeeeeecC-CCccccCCchhhhhhhhcCCCcccEEEE
Q 007533 163 LGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (599)
Q Consensus 163 ~rq~~~~~g~~n~~~ihv~~vp~~~~-~~e~ktkptq~sv~~Lrs~Gi~pd~iv~ 216 (599)
..++-..++-. +.+| ... .++ -.=++-+++.|++.|+..-++|+
T Consensus 121 ~~dl~~~~~~~-vilV-------~~~~~~~--~~~~~~~~~~l~~~~~~i~gvv~ 165 (166)
T TIGR00347 121 TADLIKLLQLP-VILV-------VRVKLGT--INHTLLTVEHARQTGLTLAGVIL 165 (166)
T ss_pred HHHHHHHhCCC-EEEE-------ECCCCcH--HHHHHHHHHHHHHCCCCeEEEEe
Confidence 23344444422 3222 111 122 23566677788899988888775
|
Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor. |
| >PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional | Back alignment and domain information |
|---|
Probab=84.84 E-value=1.7 Score=44.45 Aligned_cols=37 Identities=32% Similarity=0.250 Sum_probs=35.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~ 39 (599)
||.|.|+|- ||-||=.++..+-..|+.+|++|..+|-
T Consensus 1 m~vi~ivG~--~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF--KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC--CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 889999998 8999999999999999999999999993
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=84.57 E-value=12 Score=35.62 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=32.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+.++| ..|-||=.+++.+...|...|.+|..+-.|+|
T Consensus 3 ~~~~G--~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVG--LQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 45555 36899999999999999999999999999985
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
Probab=84.25 E-value=2.2 Score=44.72 Aligned_cols=45 Identities=31% Similarity=0.319 Sum_probs=39.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc--ccCCCCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY--LNTDAGT 49 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy--ln~d~gt 49 (599)
||.|-|+|- ||-||=..+..|-..|+.+| +|..||.||- .. -+|+
T Consensus 1 M~~i~i~G~--~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~-~~g~ 47 (274)
T PRK14493 1 MKVLSIVGY--KATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLN-PDGT 47 (274)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCC-CCCC
Confidence 788889998 89999999999999999999 9999999993 22 4663
|
|
| >COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.63 E-value=11 Score=39.35 Aligned_cols=197 Identities=17% Similarity=0.259 Sum_probs=108.0
Q ss_pred CceEEEEEeecCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc--cCCCEEEeCCCC
Q 007533 294 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGF 370 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~-DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlVPGGf 370 (599)
...+|+|+- --.-+ ..=..+++.|-. -...+.+.+..+++..- ..+..+...+|-.-|+.+ ..+||.||+|.|
T Consensus 34 RPL~IlilN-LMP~Ki~TE~Q~lRLL~n--sPLQV~itll~~~sh~~-KnTp~eHl~~FY~tfeeVk~~~FDG~IiTGAP 109 (307)
T COG1897 34 RPLKILILN-LMPKKIETETQILRLLGN--SPLQVDITLLRIDSHES-KNTPAEHLNSFYCTFEEVKDQKFDGLIITGAP 109 (307)
T ss_pred ccceeeeee-cCchhHHHHHHHHHHhcC--CCceEEEEEEEecCcCC-CCCcHHHHHHHhhcHHHHhhcccCceEEeCCc
Confidence 457888882 32110 011134444422 33455556666665432 222223333444444443 579999999976
Q ss_pred CCC-------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCC
Q 007533 371 GNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 443 (599)
Q Consensus 371 G~r-------g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Gg 443 (599)
=.. -++.+...+.|...+=--.|=||-|.|.+...|= |++.-. ||+. .
T Consensus 110 ve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~y----Gv~K~~---------------l~~K----l-- 164 (307)
T COG1897 110 VELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFY----GVPKYT---------------LPEK----L-- 164 (307)
T ss_pred ccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHc----CCCccc---------------cchh----h--
Confidence 332 2466888899999888889999999999876542 322110 1110 0
Q ss_pred ccccCceeeE-EecCCchhhhccCCceeEEeeeeeee-eeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEc
Q 007533 444 TMRLGSRRTY-FQIKDCKSAKLYGNRTFIDERHRHRY-EVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 521 (599)
Q Consensus 444 tmrLG~~~v~-l~~~~s~l~~iyg~~~~I~erHrHrY-eVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQ 521 (599)
.|-++-. +.+.+.+++++ . +....-| -|| +++.+.+.+ ..+|++++.+.... +-.+..+++..+ =+-
T Consensus 165 ---~GVy~h~~l~p~~~l~rGf-d--d~f~~Ph-SR~t~~~~e~i~~--~~~LeIL~es~e~G-~~l~a~k~~r~i-fv~ 233 (307)
T COG1897 165 ---SGVYKHDILSPHSLLTRGF-D--DSFLAPH-SRYTDVPKEDILA--VPDLEILAESKEAG-VYLLASKDGRNI-FVT 233 (307)
T ss_pred ---hceeeccccCccchhhccC-C--ccccCcc-cccccCCHHHHhh--CCCceeeecccccc-eEEEecCCCCeE-EEe
Confidence 1122211 22331222322 1 1112223 233 566666655 46799999886655 677777777753 567
Q ss_pred ccCCCcCCC
Q 007533 522 FHPEYKSRP 530 (599)
Q Consensus 522 FHPE~ss~p 530 (599)
-|||+....
T Consensus 234 gH~EYD~~t 242 (307)
T COG1897 234 GHPEYDATT 242 (307)
T ss_pred CCcchhhhH
Confidence 799998764
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=83.45 E-value=1.8 Score=45.27 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=34.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-C-CeeEEeeecccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-G-LRVTCIKIDPYL 43 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~-g-~~v~~~k~dpyl 43 (599)
+.|.+.|. +|.||=.+++.++..|+.+ | ++|.++.+|||-
T Consensus 195 ~vi~~vGp--tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGP--TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35667775 8999999999999999876 5 999999999874
|
|
| >PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A | Back alignment and domain information |
|---|
Probab=82.04 E-value=2.1 Score=41.84 Aligned_cols=163 Identities=20% Similarity=0.279 Sum_probs=89.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKL 82 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~l 82 (599)
=||||| .=.+.||=.+++.|.+.|+.+|.+|...| |.++|.. + |=|.-...++.+...
T Consensus 2 ~i~I~~-t~t~vGKT~vslgL~~~l~~~g~~v~~~K-------------Pi~~~~~---~-----d~d~~~~~~~~~~~~ 59 (199)
T PF13500_consen 2 TIFITG-TDTGVGKTVVSLGLARALRRRGIKVGYFK-------------PIQTGPE---D-----DEDAELIRELFGLSE 59 (199)
T ss_dssp EEEEEE-SSSSSSHHHHHHHHHHHHHHTTSEEEEEE-------------EEEESCC---C-----SSHHHHHHHHCCTCC
T ss_pred EEEEEe-CCCCCCHHHHHHHHHHHHHhCCCceEEEe-------------eeEecCC---C-----CchHHHHHHHhCCCc
Confidence 466664 45789999999999999999999998777 8888876 1 224444566666554
Q ss_pred CCC--CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 83 TRD--NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 83 ~~~--~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+.. +-++-..-.+..+..++.|. .++ .++|. .++++ .+.|++|||=-|.+. .....-
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~i~--~~~l~--------~~~D~vlVEGag~~~--~~~~~~ 118 (199)
T PF13500_consen 60 PPDDPSPYTFDEPASPHLAAELEGV----DID-----LERII--YKELA--------EEYDVVLVEGAGGLM--VPIFSG 118 (199)
T ss_dssp CHHHHECEEESSSS-HHHHHHHHT-------------HHHHH--HHHCH--------TTTCEEEEEESSSTT--SECCTT
T ss_pred ccccccccccCcccCHHHHhhccCC----ccc-----HHHHH--HHHHh--------hcCCEEEEeCCcccC--cccccC
Confidence 322 22222222233344444331 111 22222 24443 477999999555444 222222
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCcccc-CCchhhhhhhhcCCCcccEEEEec
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKT-KPTQHSVRGLRGQGLTPNILACRS 218 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~kt-kptq~sv~~Lrs~Gi~pd~iv~R~ 218 (599)
.-..++...++.. +++ +.+ ++..| -=+..+++.++..|+..-++|.-.
T Consensus 119 ~~n~dia~~L~a~-vIl-------V~~--~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~ 167 (199)
T PF13500_consen 119 DLNADIAKALGAP-VIL-------VAS--GRLGTINHTLLTIEALKQRGIRVLGVILNR 167 (199)
T ss_dssp EEHHHHHHHHT-E-EEE-------EEE--SSTTHHHHHHHHHHHHHCTTS-EEEEEEEE
T ss_pred hHHHHHHHHcCCC-EEE-------EeC--CCCCCHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 3334555555422 222 221 22222 112446678888999999888776
|
... |
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=81.67 E-value=2.6 Score=44.24 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=38.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (599)
|| |.|+| =-|.||=.+|+.++..|..+|+||-.|-+||=.|.=
T Consensus 1 m~-ia~~g--KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t 43 (290)
T CHL00072 1 MK-LAVYG--KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST 43 (290)
T ss_pred Ce-EEEEC--CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccc
Confidence 78 77787 788999999999999999999999999999987753
|
|
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=81.60 E-value=2.3 Score=43.75 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=39.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
||-|-|+ | =-|+||=.+|..|+..|..+|+||-.+-.||..|-
T Consensus 1 ~~~iav~-g-KGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 1 MRQIAIY-G-KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred CCEEEEE-C-CCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 6778788 5 78999999999999999999999999999999885
|
|
| >cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=80.94 E-value=2.5 Score=44.48 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=38.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCC
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGT 49 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gt 49 (599)
|-|||| ||-||=.++.++..+|+..|.+|..|..|.|--.|--+
T Consensus 2 IgItG~--SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~ 45 (277)
T cd02029 2 IAVTGS--SGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERME 45 (277)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchh
Confidence 678996 89999999999999999999999999999998755433
|
PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase | Back alignment and domain information |
|---|
Probab=80.25 E-value=6.2 Score=39.71 Aligned_cols=108 Identities=15% Similarity=0.053 Sum_probs=64.7
Q ss_pred HHHHHHhhhcCCCCceEEEEEeecCCC-cchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc
Q 007533 281 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358 (599)
Q Consensus 281 ~W~~l~~~~~~~~~~v~IaiVGkY~~l-~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L 358 (599)
-|+.+.+... ....+|+++. +... .+.|. .+.++++..|+..... +...+.+. ..+| ++.+.+
T Consensus 17 i~~~~~~~ag--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~v~~-----~~~~~~~~---a~~~----~~~~~l 81 (217)
T cd03145 17 ILQRFVARAG--GAGARIVVIP-AASEEPAEVGEEYRDVFERLGAREVEV-----LVIDSREA---ANDP----EVVARL 81 (217)
T ss_pred HHHHHHHHcC--CCCCcEEEEe-CCCcChhHHHHHHHHHHHHcCCceeEE-----eccCChHH---cCCH----HHHHHH
Confidence 3444554443 2357899994 4322 22333 5677788888764221 22111110 0111 133568
Q ss_pred cCCCEEEeCCCCCCCc-----hhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 359 KGADGILVPGGFGNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg-----~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.++|+|++.||--.+- -.+...+++.+.+++.|+.|+-.|.-++.
T Consensus 82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~ 131 (217)
T cd03145 82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMS 131 (217)
T ss_pred HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhh
Confidence 9999999999732221 13566788888889999999999998874
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 599 | ||||
| 3nva_A | 535 | Dimeric Form Of Ctp Synthase From Sulfolobus Solfat | 1e-127 | ||
| 1vco_A | 550 | Crystal Structure Of T.Th. Hb8 Ctp Synthetase Compl | 1e-123 | ||
| 1vcm_A | 550 | Crystal Structure Of T.Th. Hb8 Ctp Synthetase Lengt | 1e-123 | ||
| 1s1m_A | 545 | Crystal Structure Of E. Coli Ctp Synthetase Length | 1e-120 | ||
| 2vkt_A | 289 | Human Ctp Synthetase 2 - Glutaminase Domain Length | 6e-83 | ||
| 2vo1_A | 295 | Crystal Structure Of The Synthetase Domain Of Human | 4e-82 | ||
| 2v4u_A | 289 | Human Ctp Synthetase 2 - Glutaminase Domain In Comp | 1e-81 | ||
| 3ihl_A | 282 | Human Ctps2 Crystal Structure Length = 282 | 2e-81 | ||
| 2w7t_A | 273 | Trypanosoma Brucei Ctps - Glutaminase Domain With B | 1e-49 |
| >pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus Length = 535 | Back alignment and structure |
|
| >pdb|1VCO|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Complex With Glutamine Length = 550 | Back alignment and structure |
|
| >pdb|1VCM|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Length = 550 | Back alignment and structure |
|
| >pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase Length = 545 | Back alignment and structure |
|
| >pdb|2VKT|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain Length = 289 | Back alignment and structure |
|
| >pdb|2VO1|A Chain A, Crystal Structure Of The Synthetase Domain Of Human Ctp Synthetase Length = 295 | Back alignment and structure |
|
| >pdb|2V4U|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain In Complex With 5-Oxo-L-Norleucine Length = 289 | Back alignment and structure |
|
| >pdb|3IHL|A Chain A, Human Ctps2 Crystal Structure Length = 282 | Back alignment and structure |
|
| >pdb|2W7T|A Chain A, Trypanosoma Brucei Ctps - Glutaminase Domain With Bound Acivicin Length = 273 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} Length = 535 | Back alignment and structure |
|---|
Score = 815 bits (2107), Expect = 0.0
Identities = 253/548 (46%), Positives = 367/548 (66%), Gaps = 24/548 (4%)
Query: 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVL 61
KY++VTGGV+S +GKG +SIG+LLK G VT +KIDPY+N DAGTM+P+ HGEVFV
Sbjct: 4 KYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVDAGTMNPYMHGEVFVT 63
Query: 62 DDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEI 121
+DG E DLDLG+YERFMD+ +T+ NNIT GK+Y VI KER+G YLG+TVQ++PH+TD+I
Sbjct: 64 EDGAETDLDLGHYERFMDVNMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQI 123
Query: 122 QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVS 181
+D I + K ++ ++E+GGT+GDIES+PF+EA+ Q G N +H++
Sbjct: 124 KDMIRYAS------KINNAEITLVEIGGTVGDIESLPFLEAVRQLKLEEGEDNVIFVHIA 177
Query: 182 LVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241
LV L+V GE KTKP QHSV+ LR G+ P+ + R+T+ LDD + K++ F +V +I
Sbjct: 178 LVEYLSVTGELKTKPLQHSVQELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDHI 237
Query: 242 ITLYDVPNIWHIPLLLRKAH--EAIFKVLNLQGTTKEPLLKEWTSRAEICDGLH--EPVR 297
++ YDV + +P++L I L L+ ++ L +W S G++ + +
Sbjct: 238 VSSYDVETSYEVPIILESQKLVSKILSRLKLE--DRQVDLTDWISFVNNIKGINSKKTIN 295
Query: 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 357
IA+VGKYT L D+Y+SI +A+ HAS + + + WI + DLE ++ +N + ++
Sbjct: 296 IALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLE--SDTKNLN------EI 347
Query: 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 417
L +GI+V GFG+RG +GKI A KYAREH IP+LGIC G Q++++EFAR VL L +AN
Sbjct: 348 LGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEAN 407
Query: 418 STEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 476
STE +PNTK+P + + E + T +GGTMRLG+++ + + + +LYG + + ERHR
Sbjct: 408 STEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILK-EGTIAYQLYG-KKVVYERHR 465
Query: 477 HRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 536
HRYEVNP + LE+AGL +G E +EI+ELP++ +F+ Q HPE+KSRP PSP+
Sbjct: 466 HRYEVNPKYVDILEDAGLVVSGISENG-LVEIIELPSNKFFVATQAHPEFKSRPTNPSPI 524
Query: 537 FLGLIAAA 544
+LG I A
Sbjct: 525 YLGFIRAV 532
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A Length = 550 | Back alignment and structure |
|---|
Score = 814 bits (2105), Expect = 0.0
Identities = 268/554 (48%), Positives = 366/554 (66%), Gaps = 34/554 (6%)
Query: 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVL 61
KYV +TGGVVS LGKG+ SS+G LL+A G RVT IKIDPY+N DAGTM P+EHGEVFV
Sbjct: 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVT 72
Query: 62 DDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEI 121
DG E DLD+G+YERF+D+ L+R NN+TTG++Y SVI KER+G+YL +TVQV+PHITDEI
Sbjct: 73 ADGAETDLDIGHYERFLDMDLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEI 132
Query: 122 QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVS 181
++ I +VA +E ++ V+E+GGT+GDIES+PF+EA+ QF + G GN +H++
Sbjct: 133 KERIRKVA------EEQKAEIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLT 186
Query: 182 LVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241
LVP L E KTKPTQHSV LRG G+ P+IL RS + + V+ K++ F +V ++
Sbjct: 187 LVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHV 246
Query: 242 ITLYDVPNIWHIPLLLRKAH--EAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEP---V 296
+ V +++ +PLLL + A+ + L L+ P L W E L P V
Sbjct: 247 FSSPTVEHLYEVPLLLEEQGLGRAVERALGLE--AVIPNLSFWQ---EAVRVLKHPERTV 301
Query: 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 356
+IA+ GKY + DAYLS+L+AL HA + R ++ + W+ A L E + + +
Sbjct: 302 KIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESL----EAADLE------E 351
Query: 357 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 416
+ GILVPGGFG RG++GK+ AA+YARE +IPYLGICLG+Q+AVIEFAR+V L+ A
Sbjct: 352 AFRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGA 411
Query: 417 NSTEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERH 475
NSTEFDP+T +P + MPE +GGTMRLG + +LYG + + ERH
Sbjct: 412 NSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIK-PGTLLHRLYG-KEEVLERH 469
Query: 476 RHRYEVNPDMIARLENAGLSFTG-----KDETSQRMEIVELPNHPYFIGVQFHPEYKSRP 530
RHRYEVNP + LE AGL + + + +E +EL +HP+F+G+Q HPE+KSRP
Sbjct: 470 RHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRP 529
Query: 531 GKPSPLFLGLIAAA 544
+PSP F+G + AA
Sbjct: 530 MRPSPPFVGFVEAA 543
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* Length = 545 | Back alignment and structure |
|---|
Score = 804 bits (2078), Expect = 0.0
Identities = 260/559 (46%), Positives = 354/559 (63%), Gaps = 42/559 (7%)
Query: 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVL 61
Y+ VTGGVVS LGKG+ A+S+ +L+A GL VT +K+DPY+N D GTMSP +HGEVFV
Sbjct: 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVT 63
Query: 62 DDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEI 121
+DG E DLDLG+YERF+ K++R NN TTG+IY V+ KER+GDYLG TVQV+PHIT+ I
Sbjct: 64 EDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAI 123
Query: 122 QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVS 181
++ + DV ++E+GGT+GDIES+PF+EA+ Q + +G + +H++
Sbjct: 124 KERVLEGG--------EGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLT 175
Query: 182 LVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241
LVP + GE KTKPTQHSV+ L G+ P+IL CRS A+ N + K++ FC+VPE+ +
Sbjct: 176 LVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAV 235
Query: 242 ITLYDVPNIWHIPLLLRKAH--EAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEP---V 296
I+L DV +I+ IP LL+ + I K +L E L EW ++ P V
Sbjct: 236 ISLKDVDSIYKIPGLLKSQGLDDYICKRFSLN--CPEANLSEWE---QVIFEEANPVSEV 290
Query: 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 356
I MVGKY L DAY S+++AL H + R + I I + D+ E +
Sbjct: 291 TIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDV----ETRGVE------- 339
Query: 357 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 416
+LKG D ILVPGGFG RGV+G I A++ARE+ IPYLGICLGMQVA+I++AR V N+ +A
Sbjct: 340 ILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENA 399
Query: 417 NSTEFDPNTKNPCVIFMPE-----------GSKTHMGGTMRLGSRRTYFQIKDCKSAKLY 465
NSTEF P+ K P V + E K+ +GGTMRLG+++ D +LY
Sbjct: 400 NSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLV-DDSLVRQLY 458
Query: 466 GNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPE 525
I ERHRHRYEVN ++ ++E+AGL G+ Q +EI+E+PNHP+F+ QFHPE
Sbjct: 459 N-APTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPE 517
Query: 526 YKSRPGKPSPLFLGLIAAA 544
+ S P PLF G + AA
Sbjct: 518 FTSTPRDGHPLFAGFVKAA 536
|
| >2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A Length = 289 | Back alignment and structure |
|---|
Score = 408 bits (1051), Expect = e-140
Identities = 146/286 (51%), Positives = 191/286 (66%), Gaps = 6/286 (2%)
Query: 268 LNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 327
+ + L + + IA+VGKYT L D Y S+ KAL H+++ +
Sbjct: 4 HHHH--SSGVDLGTE----NLYFQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINH 57
Query: 328 KLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 387
KL + +I + DLE TE E+P + AW+ L ADGILVPGGFG RG GK+ A +AR
Sbjct: 58 KLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGIRGTLGKLQAISWART 117
Query: 388 HRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 447
+IP+LG+ LGMQ+AVIEFAR+ LNL+DA+STEF PN P VI MPE + ++GGTMRL
Sbjct: 118 KKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMRL 177
Query: 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRME 507
G RRT F+ ++ KLYG+ FI+ERHRHR+EVNP++I + E LSF G+D RME
Sbjct: 178 GIRRTVFKTENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRME 237
Query: 508 IVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQ 553
I+EL NHPYF+GVQFHPE+ SRP KPSP +LGL+ AA G L+ +Q
Sbjct: 238 IIELANHPYFVGVQFHPEFSSRPMKPSPPYLGLLLAATGNLNAYLQ 283
|
| >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} Length = 273 | Back alignment and structure |
|---|
Score = 349 bits (897), Expect = e-117
Identities = 110/271 (40%), Positives = 146/271 (53%), Gaps = 13/271 (4%)
Query: 293 HEPVRIAMVGKYT-GLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY 351
+ VRIA VGKY D Y S+L+ H + L+ +L I ++ + +LE E
Sbjct: 6 NPTVRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADE----- 60
Query: 352 KAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVL 411
A K L G DGI VPGGFGNRGV GK AA+ AR + IPY G+ LGMQVAVIE +R+V+
Sbjct: 61 --ARKALLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV 118
Query: 412 NLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFI 471
DANS EF+ + + V M + MG M LG+ Y K AK+Y +
Sbjct: 119 GWSDANSEEFNKESTHQVVRIMDC-DRNKMGANMHLGACDVYIVEKSSIMAKIYSKSNIV 177
Query: 472 DERHRHRYEVNPDMIARLENAGLSFTGKDETS----QRMEIVELPNHPYFIGVQFHPEYK 527
ERHRHRYEVN L AGL + + + R+E VE P+ +F+ VQFHPE+
Sbjct: 178 VERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFI 237
Query: 528 SRPGKPSPLFLGLIAAACGQLDTLIQGSGSQ 558
S P P+P +L +AAA + Q +
Sbjct: 238 STPMDPAPTYLSFMAAAAKKDYVWPQKCSQR 268
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 2e-12
Identities = 77/531 (14%), Positives = 165/531 (31%), Gaps = 144/531 (27%)
Query: 74 YERFMDIKLTRDNNITTGKIYQSVIDKERKG-------DYLGKTVQVVP--HIT-----D 119
++F++ L + I D L QV +++
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 120 EIQDWIERV---AMIPVDGKEG------PVDVC-----VIELGG-----TIGDIES-MPF 159
+++ + + + +DG G +DVC ++ + + S
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 160 IEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRST 219
+E L + Y++ P N+ + + + Q +R L N L
Sbjct: 199 LEMLQKLLYQIDP-NWTSRSDHSSNI-----KLRIHSIQAELRRLLKSKPYENCL----- 247
Query: 220 VALDDNVKGK--LSQF---CHV----PEQNIITLYDVPNIWHIPL------LLRKAHEAI 264
+ L + V+ + F C + + + HI L L +++
Sbjct: 248 LVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 265 F-KVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGK----YTGLSDAYLSI----L 315
K L+ + L E+ P R++++ + D + + L
Sbjct: 307 LLKYLD----CRPQDLPR-----EVLTTN--PRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 316 KALLHASV------DLRK---KLVI---D-WIPACDLEDATEKENPDAYKAAWKLLKGAD 362
++ +S+ + RK +L + IP L W + +D
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS------------LIWFDVIKSD 403
Query: 363 GILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFA---RSVLNLRDANST 419
++V L K +E I I L ++V + RS+++
Sbjct: 404 VMVVVNKLHKYS-----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPK 457
Query: 420 EFDPNTKNPCV----IFMPEGSKTHMG---GTMRLGSRRTYFQIKDCKSAKLYGNRTFID 472
FD + P + +H+G + R T F+ ++ + F++
Sbjct: 458 TFDSDDLIPPYLDQYFY------SHIGHHLKNIEHPERMTLFR-------MVFLDFRFLE 504
Query: 473 ERHRHR-YEVNP-----DMIARLENAGLSFTGKDETSQRM--EIVE-LPNH 514
++ RH N + + +L+ D +R+ I++ LP
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 2e-09
Identities = 55/428 (12%), Positives = 121/428 (28%), Gaps = 146/428 (34%)
Query: 235 HVPE--QNIITLYDVPNIWHIPLLLRKAHEAIFKVLNLQGTTK-----EPLLK---EWTS 284
V + ++I++ ++ +I + +F L + E +L+ ++
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKF-- 93
Query: 285 RAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 344
L P++ + ++ Y+ L + + K V +
Sbjct: 94 -------LMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNV------------SR 133
Query: 345 KENPDAYKAAWKLLKGADGILVPGGFGNRGVQGK-ILAAKYAREHRIPYLGICLGMQVAV 403
+ + A L+ A +L+ G G+ GK +A +++
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGS----GKTWVALDVCLSYKV------------Q 177
Query: 404 IEFARSV--LNLRDANSTEFDP-NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCK 460
+ + LNL++ NS E + P + S +I +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS------DHSSNIKLRIHSIQ 231
Query: 461 SAKLYGNRTFIDERHRH---------------------------RYEVNPDMIA------ 487
+ R + + + R++ D ++
Sbjct: 232 AEL---RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 488 -RLENAGLSFTGKDETSQ------RMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGL 540
L++ ++ T DE +LP E + +P L +
Sbjct: 289 ISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLP-----------REVLTT----NPRRLSI 332
Query: 541 IAAA---------------CGQLDTLIQGSGSQGNLSAKLGNGIAMEKVYQ------KGT 579
IA + C +L T+I+ S + L K++
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLN--VLEPAE-----YRKMFDRLSVFPPSA 385
Query: 580 TKPAKVLS 587
P +LS
Sbjct: 386 HIPTILLS 393
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Length = 254 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 44/251 (17%), Positives = 73/251 (29%), Gaps = 97/251 (38%)
Query: 334 IPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG-------FGNRGVQGK-------- 378
+P D A + + DG+L+ GG + Q
Sbjct: 47 LPIDDPSTAVQ------------AISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRD 94
Query: 379 ---ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE 435
I + A + P IC GMQ+ +N
Sbjct: 95 SYEIALVRAALDAGKPIFAICRGMQL---------VN----------------------- 122
Query: 436 GSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPD-MIARLENA-- 492
+GGT+ Y I ++ L + ++ H ++ P +A+
Sbjct: 123 ---VALGGTL-------YQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKK 172
Query: 493 ---------------GLSFTGK--DETSQRMEIVELPNHPYF-IGVQFHPEYKSRPGKPS 534
T + D +E VE N P + +GVQ+HPE + S
Sbjct: 173 LVNSLHHQFIKKLAPSFKVTARTADGM---IEAVEGDNLPSWYLGVQWHPELMFQTDPES 229
Query: 535 -PLFLGLIAAA 544
LF L+ +
Sbjct: 230 EQLFQALVDES 240
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 5e-09
Identities = 34/196 (17%), Positives = 55/196 (28%), Gaps = 36/196 (18%)
Query: 356 KLLKGADGILVPGGFGN----------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIE 405
L K +GIL PGG + + + + P G CLG + +
Sbjct: 82 ILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQ-SFDDGDYFPVWGTCLGFEELSLL 140
Query: 406 FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLY 465
+ L T D + F + M FQ +
Sbjct: 141 ISGECL------LTATDTVDVAMPLNFTGGQLHSRM------------FQNFPTELLLSL 182
Query: 466 GNRTFIDERHRHRYEVNPDMIARLENAGLSF----TGKDETSQRMEIVELPNHPYFIGVQ 521
+ H++ ++ E F T D + + +E +P GVQ
Sbjct: 183 AVEPLTA--NFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYP-VYGVQ 239
Query: 522 FHPEYKSRPGKPSPLF 537
+HPE K
Sbjct: 240 WHPEKAPYEWKNLDGI 255
|
| >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 Length = 200 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 66/193 (34%)
Query: 356 KLLKGADGILVPG---------GFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406
K + AD +++PG F G ++ ++ P+LGIC+GMQV +
Sbjct: 36 KAHEEADLLVLPGQGHFGQVMRAFQESGFVERVR--RHLERGL-PFLGICVGMQVL---Y 89
Query: 407 ARSVLNLRDANSTEFDPNTKNPC-------VIFMPEGSKTHMGGTMRLGSRRTYFQIKDC 459
S E P V G MG + ++
Sbjct: 90 EG---------SEEA-PGV--RGLGLVPGEVRRFRAGRVPQMG----------WNALEFG 127
Query: 460 KSAKLYGNRTFIDER----HRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHP 515
+ + + + P + + E G FT ++ N
Sbjct: 128 GAFAP-----LTGRHFYFANSYYGPLTPYSLGKGEYEGTPFTA---------LLAKEN-- 171
Query: 516 YFIGVQFHPEYKS 528
+ QFHPE KS
Sbjct: 172 -LLAPQFHPE-KS 182
|
| >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B Length = 201 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 39/193 (20%), Positives = 62/193 (32%), Gaps = 72/193 (37%)
Query: 358 LKGADGILVPG-G-FG-------NRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR 408
D + +PG G FG + + K+ + R +G+CLGMQ + F
Sbjct: 40 NDLYDLLFIPGVGHFGEGMRRLRENDLIDFVR--KHVEDER-YVVGVCLGMQ---LLFEE 93
Query: 409 SV-------LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI---KD 458
S L+L + N + + + P HMG + ++
Sbjct: 94 SEEAPGVKGLSLIEGNVVKL-RSRRLP-----------HMG----------WNEVIFKDT 131
Query: 459 CKSAKLYGNRTFIDERHRHRYEVNPD---MIARLENAGLSFTGKDETSQRMEIVELPNHP 515
+ Y F+ H Y + ++ E G F V
Sbjct: 132 FPNGYYY----FV-----HTYRAVCEEEHVLGTTEYDGEIFPS---------AVRKGR-- 171
Query: 516 YFIGVQFHPEYKS 528
+G QFHPE KS
Sbjct: 172 -ILGFQFHPE-KS 182
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| 3nva_A | 535 | CTP synthase; rossman fold, nucleotide binding, LI | 100.0 | |
| 1vco_A | 550 | CTP synthetase; tetramer, riken structural genomic | 100.0 | |
| 1s1m_A | 545 | CTP synthase; CTP synthetase, UTP:ammonia ligase ( | 100.0 | |
| 2c5m_A | 294 | CTP synthase; cytidine 5-prime triphosphate synthe | 100.0 | |
| 2vo1_A | 295 | CTP synthase 1; pyrimidine biosynthesis, glutamine | 100.0 | |
| 2v4u_A | 289 | CTP synthase 2; pyrimidine biosynthesis, glutamine | 100.0 | |
| 2w7t_A | 273 | CTP synthetase, putative cytidine triphosphate syn | 100.0 | |
| 1a9x_B | 379 | Carbamoyl phosphate synthetase (small chain); amid | 100.0 | |
| 3fij_A | 254 | LIN1909 protein; 11172J, uncharacterized protein, | 99.95 | |
| 2a9v_A | 212 | GMP synthase; structural genomics, joint center fo | 99.92 | |
| 1qdl_B | 195 | Protein (anthranilate synthase (TRPG-SUBUNIT)); tr | 99.92 | |
| 1wl8_A | 189 | GMP synthase [glutamine-hydrolyzing] subunit A; tr | 99.91 | |
| 4gud_A | 211 | Imidazole glycerol phosphate synthase subunit His; | 99.91 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 99.9 | |
| 1l9x_A | 315 | Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO | 99.89 | |
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 99.89 | |
| 2ywj_A | 186 | Glutamine amidotransferase subunit PDXT; uncharact | 99.89 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 99.88 | |
| 3r75_A | 645 | Anthranilate/para-aminobenzoate synthases compone; | 99.88 | |
| 1i1q_B | 192 | Anthranilate synthase component II; tryptophan bio | 99.88 | |
| 1o1y_A | 239 | Conserved hypothetical protein TM1158; flavodoxin- | 99.87 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 99.87 | |
| 3d54_D | 213 | Phosphoribosylformylglycinamidine synthase 1; alph | 99.86 | |
| 1gpw_B | 201 | Amidotransferase HISH; lyase/transferase, complex | 99.85 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 99.85 | |
| 3l7n_A | 236 | Putative uncharacterized protein; glutamine amidot | 99.83 | |
| 2ywd_A | 191 | Glutamine amidotransferase subunit PDXT; pyridoxin | 99.83 | |
| 3m3p_A | 250 | Glutamine amido transferase; structural genomics, | 99.83 | |
| 1q7r_A | 219 | Predicted amidotransferase; structural genomics, Y | 99.81 | |
| 2nv0_A | 196 | Glutamine amidotransferase subunit PDXT; 3-layer(A | 99.81 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 99.8 | |
| 1ka9_H | 200 | Imidazole glycerol phosphtate synthase; riken stru | 99.79 | |
| 2iss_D | 208 | Glutamine amidotransferase subunit PDXT; (beta/alp | 99.79 | |
| 2abw_A | 227 | PDX2 protein, glutaminase; PLP-synthase, vitamin B | 99.74 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.67 | |
| 2vdj_A | 301 | Homoserine O-succinyltransferase; methionine biosy | 99.47 | |
| 2h2w_A | 312 | Homoserine O-succinyltransferase; TM0881, (EC 2.3. | 99.46 | |
| 3ugj_A | 1303 | Phosphoribosylformylglycinamidine synthase; amidot | 98.92 | |
| 3l4e_A | 206 | Uncharacterized peptidase LMO0363; hypothetical pr | 98.4 | |
| 1fy2_A | 229 | Aspartyl dipeptidase; serine protease, catalytic t | 98.34 | |
| 1oi4_A | 193 | Hypothetical protein YHBO; PFPI/THIJ family, compl | 97.62 | |
| 3l18_A | 168 | Intracellular protease I; gatase1_PFPI_LIKE, hydro | 97.21 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.91 | |
| 3qxc_A | 242 | Dethiobiotin synthetase; DTBS, structural genomics | 96.44 | |
| 2vrn_A | 190 | Protease I, DR1199; cysteine sulfenic acid, DJ-1/T | 96.27 | |
| 2rk3_A | 197 | Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha | 96.19 | |
| 4hcj_A | 177 | THIJ/PFPI domain protein; structural genomics, PSI | 95.93 | |
| 3of5_A | 228 | Dethiobiotin synthetase; structural genomics, cent | 95.91 | |
| 4e08_A | 190 | DJ-1 beta; flavodoxin-like fold, stress response, | 95.91 | |
| 2ab0_A | 205 | YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase | 95.73 | |
| 3er6_A | 209 | Putative transcriptional regulator protein; struct | 95.66 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 95.43 | |
| 3l3b_A | 242 | ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, | 95.39 | |
| 3fgn_A | 251 | Dethiobiotin synthetase; biotin biosynthesis, BIOD | 95.14 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.11 | |
| 3cne_A | 175 | Putative protease I; structural genomics, PSI-2, M | 94.87 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 94.84 | |
| 3ej6_A | 688 | Catalase-3; heme, hydrogen iron, metal-binding, ox | 94.79 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 94.68 | |
| 3f5d_A | 206 | Protein YDEA; unknow protein, PSI-II, nysgrc, stru | 94.68 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 94.68 | |
| 1vhq_A | 232 | Enhancing lycopene biosynthesis protein 2; structu | 94.56 | |
| 2fex_A | 188 | Conserved hypothetical protein; structural genomic | 94.55 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 94.4 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 94.31 | |
| 3en0_A | 291 | Cyanophycinase; serine protease, beta peptide spec | 94.3 | |
| 3efe_A | 212 | THIJ/PFPI family protein; structural GEN csgid, ce | 94.24 | |
| 3ot1_A | 208 | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate | 94.18 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 94.15 | |
| 1u9c_A | 224 | APC35852; structural genomics, protein structure i | 94.08 | |
| 3fse_A | 365 | Two-domain protein containing DJ-1/THIJ/PFPI-like | 93.99 | |
| 3ttv_A | 753 | Catalase HPII; heme orientation, oxidoreductase; H | 93.86 | |
| 3gra_A | 202 | Transcriptional regulator, ARAC family; transcript | 93.84 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 93.83 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 93.73 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 93.55 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 93.31 | |
| 1rw7_A | 243 | YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe | 92.84 | |
| 2g0t_A | 350 | Conserved hypothetical protein; structural genomic | 92.78 | |
| 3noq_A | 231 | THIJ/PFPI family protein; DJ-1 superfamily, isocya | 92.76 | |
| 3n7t_A | 247 | Macrophage binding protein; seattle structural gen | 92.76 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 92.68 | |
| 3kkl_A | 244 | Probable chaperone protein HSP33; peptidase, heat | 92.48 | |
| 2iuf_A | 688 | Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen | 92.0 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 91.52 | |
| 3mgk_A | 211 | Intracellular protease/amidase related enzyme (THI | 91.16 | |
| 1n57_A | 291 | Chaperone HSP31, protein YEDU; alpha-beta sandwich | 90.96 | |
| 1sy7_A | 715 | Catalase 1; heme oxidation, singlet oxygen, oxidor | 90.58 | |
| 3fkq_A | 373 | NTRC-like two-domain protein; RER070207001320, str | 90.03 | |
| 3ewn_A | 253 | THIJ/PFPI family protein; monomer, PSI nysgrc, str | 89.94 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 89.44 | |
| 4gdh_A | 194 | DJ-1, uncharacterized protein C22E12.03C; unknown | 89.17 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 89.08 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 88.98 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 88.9 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 88.82 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 86.44 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 86.39 | |
| 1z0s_A | 278 | Probable inorganic polyphosphate/ATP-NAD kinase; A | 85.79 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 85.11 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 84.69 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 82.9 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 81.49 | |
| 3pg5_A | 361 | Uncharacterized protein; structural genomics, PSI- | 81.48 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 81.0 |
| >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-198 Score=1609.50 Aligned_cols=527 Identities=48% Similarity=0.852 Sum_probs=508.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||+|||+||+||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 82 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVDAGTMNPYMHGEVFVTEDGAETDLDLGHYERFMDV 82 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSSSTTCCHHHHCCCEECTTCCEECTHHHHHHHHHCC
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeecCCCCCccccceEEEecCCccccccccchhhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||+||+||||||++||+|||||||||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 83 ~l~~~~n~ttg~iy~~vi~ker~g~ylg~tvqviphit~eik~~i~~~~~------~~~~dv~i~eiggtvgdies~pf~ 156 (535)
T 3nva_A 83 NMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQIKDMIRYASK------INNAEITLVEIGGTVGDIESLPFL 156 (535)
T ss_dssp CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHH------HHTCSEEEEEECSCTTSGGGHHHH
T ss_pred CcccccCcchhHHHHHHHHHHhcCCcCCCeeEECCCchHHHHHHHHHhhc------cCCCCEEEEEeCCccchhcccHHH
Confidence 99999999999999999999999999999999999999999999999996 468999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|+|||||||||||+++|||||||||||||+|||+|||||+|||||+.++++++|+||||||||++++
T Consensus 157 ea~rq~~~~~g~~n~~~ih~tlvp~~~~~ge~ktkptqhsv~~Lrs~GIqPdilvcRs~~~l~~~~r~KiaLfc~V~~~~ 236 (535)
T 3nva_A 157 EAVRQLKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQHSVQELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDH 236 (535)
T ss_dssp HHHHHHHHHHCTTTEEEEEEEECCBCTTTSSBCCHHHHHHHHHHHHHTCCCSEEEEEESSCCCHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHhCCCCEEEEEeeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHhhhhhcCCChhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHHHHHHhhhc--CCCCceEEEEEeecCCCcchHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD--GLHEPVRIAMVGKYTGLSDAYLSILK 316 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~--~~~~~v~IaiVGkY~~l~DaY~SIi~ 316 (599)
||+++|+||||+||++|+ |+++.|+++|+|+ .+.++|.+|++++++++ ++.++++||+||||+++.|||.|+.+
T Consensus 237 VI~i~DvdtiY~vpl~L~~qGl~~~~~~~l~l~--~~~~~~~~w~~~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~e 314 (535)
T 3nva_A 237 IVSSYDVETSYEVPIILESQKLVSKILSRLKLE--DRQVDLTDWISFVNNIKGINSKKTINIALVGKYTKLKDSYISIKE 314 (535)
T ss_dssp EEEEECCSCGGGHHHHHHHHTHHHHHHHHTTCC--CCCCCCHHHHHHHHHHHTTTCCCEEEEEEEESCTTSGGGGHHHHH
T ss_pred eEecCCCChHHHhHHHHHHCCcHHHHHHHcCCC--CCCCCHHHHHHHHHHhhccCCCCeeEEEEEecCcCCchhHHHHHH
Confidence 999999999999999999 9999999999997 46779999999999999 88889999999999999999999999
Q ss_pred HHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEe
Q 007533 317 ALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 396 (599)
Q Consensus 317 AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGIC 396 (599)
||+|+|+++.++|++.||+++++++++. ++|+.|.++|||++|||||+++.++++.++++|+++++|+||||
T Consensus 315 AL~hag~~~~~~V~I~wIds~~l~~~~~--------~~~~~L~~~DgIIlpGG~G~~~~~g~i~~ir~a~~~~~PiLGIC 386 (535)
T 3nva_A 315 AIYHASAYIGVRPKLIWIESTDLESDTK--------NLNEILGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGIC 386 (535)
T ss_dssp HHHHHHHHTTCEEEEEEEEGGGGCCSSS--------CCTTTTTSCSEEEECCCCSSTTHHHHHHHHHHHHHHTCCEEEET
T ss_pred HHHHHHHHcCCCeEEEEecchhcccccc--------chhhhccCCCEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEC
Confidence 9999999999999999999998876432 13578999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCC-cCcCCCccccCceeeEEecCCchhhhccCCceeEEeee
Q 007533 397 LGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERH 475 (599)
Q Consensus 397 LGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~-~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erH 475 (599)
+|||+|+++||++++|++||+|+||++++++|+|.+||++. ..++|||||+|.|+|.+.++ |+++++|| +..|.+||
T Consensus 387 lG~Qll~va~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v~l~~g-S~L~~iyG-~~~I~erH 464 (535)
T 3nva_A 387 FGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILKEG-TIAYQLYG-KKVVYERH 464 (535)
T ss_dssp HHHHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEEEECTT-SHHHHHHT-SSEEEEEE
T ss_pred cchhHHHHHhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEEEEcCC-CcHHHHhC-CCeeeecc
Confidence 99999999999999999999999999999999999999965 58899999999999999998 89999996 66789999
Q ss_pred eeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhc
Q 007533 476 RHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 476 rHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
||||+||+.+.+.+++.||+++|+++||. +|++|+++||||+|||||||+.++|.+++|||.+|++||.+
T Consensus 465 rHryeVNs~h~q~l~~~GL~vsA~s~DG~-IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~LF~~Fv~Aa~~ 534 (535)
T 3nva_A 465 RHRYEVNPKYVDILEDAGLVVSGISENGL-VEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAVAS 534 (535)
T ss_dssp EECCEECHHHHHHHHHTTCEEEEECTTCC-EEEEECTTSSCEEEESSCGGGGCCSSSCCHHHHHHHHHHTC
T ss_pred cccceechHHHhhcccCCeEEEEEeCCCC-EEEEEeCCCCcEEEEEeCCEecCCCCChhHHHHHHHHHHHh
Confidence 99999999999999899999999999995 99999999999999999999999998999999999999864
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-162 Score=1341.24 Aligned_cols=527 Identities=50% Similarity=0.863 Sum_probs=494.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+||+|||+++||||+||+++||+|+++|+|||||||||||||+||||||||+||+|+||||||||||+++
T Consensus 12 ~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~g~~~~~~~~ 91 (550)
T 1vco_A 12 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDM 91 (550)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECTTCCEECTHHHHHHHHHTS
T ss_pred eeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccCccccCcccCCceEECCCCceehhhhccHHhcCCc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
.|+++||+||||||++||+|||+|||||+||||+||||||||+||+++++ +.++||||||+||||||||||||+
T Consensus 92 ~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~------~~~~d~~i~e~~gt~~di~~~~~~ 165 (550)
T 1vco_A 92 DLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAE------EQKAEIVVVEVGGTVGDIESLPFL 165 (550)
T ss_dssp CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCTTTHHHHHHHHHHHHHHH------HTTCSEEEEEECSCTTSSTTHHHH
T ss_pred ccCCCCCeeccEEchhhhhhhcccccccCceEEhhHHHHHHHHHHHHHhc------ccCCCEEEEECCCChhHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999985 457999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+|||++++|++|+|||||||||||+++||+|||||||||++|||+||+||+||||++.++++++|+|+||||||++++
T Consensus 166 ~~~rq~~~~~~~~~~~~~h~~~~p~~~~~~e~ktkptq~sv~~lrs~gi~pd~lvvR~~~~~~~~~r~k~sL~~~v~~~~ 245 (550)
T 1vco_A 166 EAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGH 245 (550)
T ss_dssp HHHHTHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHHTTCCCSEEEEEESSCCCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHhHhhCcCCEEEEEEeCeecccCCCCcCCCCcchhHHHHhcCCCccCEEEEeCCCCCCcchhcccchhcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 318 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL 318 (599)
|++++|+||||+||++|+ |+++.++++|+|+ ...+++..|.+++.++.++..+++|+++|||..+.|+|.|+.++|
T Consensus 246 Vi~~~dvdt~y~lp~~lr~~G~~~~v~~~~~l~--~~~~~l~~w~~~~~~~~~~~~~v~I~ivgkyv~l~D~y~Sv~~aL 323 (550)
T 1vco_A 246 VFSSPTVEHLYEVPLLLEEQGLGRAVERALGLE--AVIPNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEAL 323 (550)
T ss_dssp EEEEECCSCTTHHHHHHHHHTHHHHHHHHTTCC--CCCCCCHHHHHHHHHHHSCSEEEEEEEEESCC---CTTHHHHHHH
T ss_pred eeecCCCChHHHHHHHHHHcCChhhhHhhCCCC--chhHHHHHhHHHHHhhcCCCCceEEcccCCeEEEEecHHHHHHHH
Confidence 999999999999999999 9999999999997 356688899999999999888999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007533 319 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 319 ~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLG 398 (599)
.|++.+..+++.+.|+++++++++. +++.+.++||||||||||+++.++++.++++|+++++|+||||||
T Consensus 324 ~~~g~~~g~~v~I~~~d~~~~~~~~----------~~~~L~~~DGIILpGGfGd~~~~g~i~~ir~a~e~~iPiLGICLG 393 (550)
T 1vco_A 324 RHAGIKNRARVEVKWVDAESLEAAD----------LEEAFRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLG 393 (550)
T ss_dssp HHHHHHTTEEEEEEEEEGGGC--CC----------HHHHTTTCSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHH
T ss_pred HHHHHHcCCeEEEEEeCccccccch----------HHHHHhcCCEEEECCCCCCcchhhhHHHHHHHHHCCCcEEEECcC
Confidence 9999998899999999987765322 346688999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCC-CcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeee
Q 007533 399 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477 (599)
Q Consensus 399 mQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~-~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrH 477 (599)
||+|++++|+++.++++++|+||++.+.+|++.+|+++ ..+++|++||+|.++|.+.++ +++..+|+ ...+.++|+|
T Consensus 394 mQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~-s~l~~iy~-~~~v~e~h~H 471 (550)
T 1vco_A 394 LQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPG-TLLHRLYG-KEEVLERHRH 471 (550)
T ss_dssp HHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTT-SHHHHHHC-CSEEEEEEEE
T ss_pred HHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEccC-chhhHhcC-Cceeeeeccc
Confidence 99999999999999999999999999999999999874 578999999999999999887 89999996 5677899999
Q ss_pred eeeeCchhhhhhccCCeEEEEEeCCC-----CeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 007533 478 RYEVNPDMIARLENAGLSFTGKDETS-----QRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQ 547 (599)
Q Consensus 478 rYeVnp~~v~~le~~Gl~~sa~s~dg-----~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 547 (599)
+|+||+.+.+.+++.|+.++|++++| ..+|++|+++||||+|||||||++++|.++++||.+|+++|.++
T Consensus 472 ~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~ 546 (550)
T 1vco_A 472 RYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAY 546 (550)
T ss_dssp SEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHHHHHH
T ss_pred eEEEchHHhhccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHHHHHHhh
Confidence 99999999888855899999999984 36999999999999999999999999998999999999998754
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-160 Score=1322.29 Aligned_cols=525 Identities=49% Similarity=0.836 Sum_probs=492.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+||+|||+++||||+||+++||+|+.+|+|||||||||||||+||||||||+||+|+||||||||||+|+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~~~~~~~~~~ 82 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRT 82 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECTTSCEECTHHHHHHHHCSS
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCCCCccCcccCCCeEECCCCCeehhhhccceeeece
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
.|+++||+||||||++||+|||+|||+|+|||++||||||||+||+++++ ++||||||+||||||||||||+
T Consensus 83 ~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~--------~~d~~i~e~~gt~~di~~~~~~ 154 (545)
T 1s1m_A 83 KMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGE--------GHDVVLVEIGGTVGDIESLPFL 154 (545)
T ss_dssp CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHT--------TCSEEEEEECSCTTSSTTHHHH
T ss_pred eecCCCCeeccEEeeehhhhccccccccCceeehhHHHHHHHHHHHHHhc--------cCCEEEEECCCChhhhhChHHH
Confidence 99999999999999999999999999999999999999999999999984 7899999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+|||++++|++|+|||||||||||+++||+|||||||||++|||+|||||+|||||+.++++++|+|+||||||++++
T Consensus 155 ~~~~q~~~~~~~~~~~~~h~~~~p~~~~~ge~ktkptq~sv~~l~s~gi~pd~lv~R~~~~~~~~~r~kisL~~~v~~~~ 234 (545)
T 1s1m_A 155 EAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKA 234 (545)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHTTTCCCSEEEEEESSCCCHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHhHhhCcCcEEEEEEeCcccccCCCCcCCCCCcCCHHHHhCCCCccCEEEEeCCCCCCchhhccCChhhCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 318 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL 318 (599)
||+++|+||||+||++|| |++++++++|+++ ...+++.+|.+++++++++...++||++|||..+.|+|.|+.++|
T Consensus 235 Vi~~~dvdt~y~lp~~lr~~G~~~~ii~~~~l~--~~~~~l~~w~~lv~~v~~~~~~v~i~~vGkyv~l~D~y~Si~~aL 312 (545)
T 1s1m_A 235 VISLKDVDSIYKIPGLLKSQGLDDYICKRFSLN--CPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEAL 312 (545)
T ss_dssp EEEEECCSCGGGHHHHHHHTTHHHHHHHHTTCC--CCCCCCHHHHHHHHHHHCCSEEEEEEEEESSCSSGGGGHHHHHHH
T ss_pred ceecCCCChHHHHHHHHHHcCChhhhhhhCCCC--chhHHHHHHHHHHHhccCCCCeEEeCCcCCeEEEEEHHHHHHHHH
Confidence 999999999999999999 9999999999996 355688999999999999988999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007533 319 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 319 ~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLG 398 (599)
+++|+++.+++.+.|+++++++++ +++.+.++||||||||||+++.++++.++++++++++|+||||||
T Consensus 313 ~~~G~~~~~~V~i~~~d~e~i~~~-----------~~~~l~~~DGIilsGGpg~~~~~g~~~~i~~a~~~~~PiLGIClG 381 (545)
T 1s1m_A 313 KHGGLKNRVSVNIKLIDSQDVETR-----------GVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLG 381 (545)
T ss_dssp HHHHHHHTEEEEEEEEEHHHHHHH-----------CTTTTTTCSEEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHH
T ss_pred HHhCcccCCeEEEccCCHHHhhhh-----------hhhhhhcCCEEEECCCCCCccchhhHHHHHHHHHCCCcEEEECCh
Confidence 999999888899999987655311 123578999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCccccCCCCCCCeeeeC----------CCC-CcCcCCCccccCceeeEEecCCchhhhccCC
Q 007533 399 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFM----------PEG-SKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN 467 (599)
Q Consensus 399 mQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~m----------pe~-~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~ 467 (599)
||+|+++||++++++++++|+||++.+.+|++.+| +++ ...++|+|||+|.+++.+.++ +++.++|+
T Consensus 382 ~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~-s~l~~iyg- 459 (545)
T 1s1m_A 382 MQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDD-SLVRQLYN- 459 (545)
T ss_dssp HHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTT-CHHHHHTT-
T ss_pred HHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEeccC-CHHHHhcC-
Confidence 99999999999999999999999999999999998 442 346789999999999999887 89999996
Q ss_pred ceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 007533 468 RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQ 547 (599)
Q Consensus 468 ~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 547 (599)
...+.+||+|||+||+.+.+.+++.|++++|+++||..+|++|+++||||+|||||||+.++|.++++||.+|+++|.++
T Consensus 460 ~~~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~ 539 (545)
T 1s1m_A 460 APTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEF 539 (545)
T ss_dssp SSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHHH
T ss_pred CceEEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHHHHHHHH
Confidence 56788999999999999999887799999999999966999999999999999999999999999999999999999764
Q ss_pred h
Q 007533 548 L 548 (599)
Q Consensus 548 ~ 548 (599)
.
T Consensus 540 ~ 540 (545)
T 1s1m_A 540 Q 540 (545)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-142 Score=1069.57 Aligned_cols=271 Identities=66% Similarity=1.116 Sum_probs=229.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||+|||+|+++|+|||||+|||||||||||||||||||+||||||||||||||+
T Consensus 23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~GTMsP~qHGEVfVtdDG~EtDLDLGhYERFl~~ 102 (295)
T 2vo1_A 23 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 102 (295)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC----------------------------------
T ss_pred ceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCCCCCChhhhceEEeecccccccccccchHhhccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|+|+||+||||||++||+|||||||||||||||||||||||+||+++|.+|+|+++.+|||||||||||||||||+||+
T Consensus 103 ~l~~~~niTtGkiY~~Vi~kERrGdYLG~TVQvIPHiTdeIk~~I~~~a~~~~~~~~~~~Dv~IvEiGGTVGDIEs~PFl 182 (295)
T 2vo1_A 103 RLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFI 182 (295)
T ss_dssp -----CEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHSCCSSSCCCCSEEEEEECSCTTCGGGHHHH
T ss_pred CcCccccccHHHHHHHHHHHHHcCCCCCCeEEecCChhhHHHHHHHHhhcccccccCCCCCEEEEEcCceeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|+||||||||||++++||+||||||||||+|||+|||||+|+|||+++|+++.|+|||+||+|++++
T Consensus 183 EAiRQ~~~~~g~~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLr~~GIqPDiivcRse~pl~~~~k~KIAlFCnV~~~~ 262 (295)
T 2vo1_A 183 EAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 262 (295)
T ss_dssp HHHHHHHHHSCGGGEEEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHTCCCSEEEEECSSCCCHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHhhcccceeEEEeeccccccccccccccchHhHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCC
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQ 271 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~ 271 (599)
||+++|++|||+||++|+ |+++.|+++|+|+
T Consensus 263 VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~LP 295 (295)
T 2vo1_A 263 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLP 295 (295)
T ss_dssp EEEECCCSSGGGHHHHHHHTTHHHHHHHHHTCC
T ss_pred EEEcCCcCcHHHHHHHHHHCCchHHHHHHcCCC
Confidence 999999999999999999 9999999999985
|
| >2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-49 Score=405.92 Aligned_cols=276 Identities=53% Similarity=0.870 Sum_probs=235.3
Q ss_pred HHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccC
Q 007533 281 EWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG 360 (599)
Q Consensus 281 ~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~ 360 (599)
-|+.+++++.++..+++|||+|||...+++|.|+.++|+++|+++..++.+.|+++++++......+++.|+++|+.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (289)
T 2v4u_A 11 VDLGTENLYFQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCK 90 (289)
T ss_dssp ------------CEEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCCceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhh
Confidence 59999999999988899999999987888999999999999999888899999998876543333356678888888999
Q ss_pred CCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCc
Q 007533 361 ADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTH 440 (599)
Q Consensus 361 ~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~ 440 (599)
+||||||||||++...+.+.++++++++++|+||||+|||+|+.++|+++.|++++++.|+++++++|++.+||+.....
T Consensus 91 ~dgiil~GG~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~ 170 (289)
T 2v4u_A 91 ADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGN 170 (289)
T ss_dssp CSEEEECSCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTC
T ss_pred CCEEEecCCCCchhHHHHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcccc
Confidence 99999999999988889999999999999999999999999999999999999999999999888899999999765556
Q ss_pred CCCccccCceeeEEe-cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEE
Q 007533 441 MGGTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIG 519 (599)
Q Consensus 441 ~GgtmrLG~~~v~l~-~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvG 519 (599)
+|++|++|.+++.+. ++ +.+.++|+....++++|+|+|+||++++..+...|++++|+++||.++|++|++++||++|
T Consensus 171 ~~~~~~~g~~~v~~~~~~-s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~lG 249 (289)
T 2v4u_A 171 LGGTMRLGIRRTVFKTEN-SILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVG 249 (289)
T ss_dssp SSCBCEEEEEEEEESCSC-CHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCEEE
T ss_pred cCCccccceEEEEEecCC-CHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeEEE
Confidence 789999999999987 55 7888888644578899999999999999888338999999999885599999999999999
Q ss_pred EcccCCCcCCCCCchHHHHHHHHHHhcchhhhhcccCC
Q 007533 520 VQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQGSGS 557 (599)
Q Consensus 520 vQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~~~~~~ 557 (599)
||||||+.+++.+++++|.+|+++|.++..+++++.+.
T Consensus 250 vQfHPE~~~~~~~~~~lf~~Fv~~~~~~~~~~~~~~~~ 287 (289)
T 2v4u_A 250 VQFHPEFSSRPMKPSPPYLGLLLAATGNLNAYLQQGCK 287 (289)
T ss_dssp ESSBGGGGCBTTBCCHHHHHHHHHHHTCHHHHHHTTCT
T ss_pred EECCCCCCCCCCchHHHHHHHHHHHHhhhhhhhhcccc
Confidence 99999999998888999999999999999988865543
|
| >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-46 Score=379.68 Aligned_cols=252 Identities=43% Similarity=0.706 Sum_probs=217.9
Q ss_pred ceEEEEEeec-CCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 295 PVRIAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 295 ~v~IaiVGkY-~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
+++||||||| ..+.|+|.|+.++|++++.++.+++.+.|++++++++++. ..+++.+.++||||||||||++
T Consensus 8 ~~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~-------~~~~~~~~~~dgiil~GG~~~~ 80 (273)
T 2w7t_A 8 TVRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNA-------DEARKALLGCDGIFVPGGFGNR 80 (273)
T ss_dssp CEEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTT-------HHHHHHHHTCSEEEECCCCTTT
T ss_pred CCEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccc-------hhHHHHHhhCCEEEecCCCCCc
Confidence 3899999999 6888999999999999999988889999999877653210 0123567899999999999999
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 374 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 374 g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
..++.+.++++++++++|+||||+|||+|+.+||++|.++++++|.|+++++++|++.+|+ .....++++|++|.+++.
T Consensus 81 ~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~-~~~~~~~~~~~~g~~~v~ 159 (273)
T 2w7t_A 81 GVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMD-CDRNKMGANMHLGACDVY 159 (273)
T ss_dssp THHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCG-GGBCSSCBCCEEEEEEEE
T ss_pred CchhHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeecc-ccccccCCcccccceEEE
Confidence 8889999999999999999999999999999999999999999999998888888887774 334445678899999998
Q ss_pred Eec-CCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCC----CCeEEEEEeCCCCeEEEEcccCCCcC
Q 007533 454 FQI-KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET----SQRMEIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 454 l~~-~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~d----g~~vE~iE~~~hpffvGvQFHPE~ss 528 (599)
+.. + +.+.++|+....++++|+|||+|++++++.+++.|++++|++++ |..+|++|++++||++|||||||+++
T Consensus 160 ~~~~~-s~l~~~~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~ 238 (273)
T 2w7t_A 160 IVEKS-SIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFIS 238 (273)
T ss_dssp ECCTT-SHHHHHTTTCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSC
T ss_pred EecCC-cHHHHHhCCCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCC
Confidence 864 5 67788886566788999999999999988775689999999998 54699999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhcchhhhhccc
Q 007533 529 RPGKPSPLFLGLIAAACGQLDTLIQGS 555 (599)
Q Consensus 529 ~p~~p~pLF~~Fv~aa~~~~~~~~~~~ 555 (599)
++.++++||.+|+++|.+++++++++.
T Consensus 239 ~~~~~~~l~~~Fv~~~~~~~~~~~~~~ 265 (273)
T 2w7t_A 239 TPMDPAPTYLSFMAAAAKKDYVWPQKC 265 (273)
T ss_dssp BTTBCCHHHHHHHHHHHTCCCCCCSSC
T ss_pred CCCchHHHHHHHHHHHHHHHHhhhhcC
Confidence 988789999999999999888877543
|
| >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=314.91 Aligned_cols=291 Identities=21% Similarity=0.253 Sum_probs=209.3
Q ss_pred EeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHH
Q 007533 178 IHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLL 257 (599)
Q Consensus 178 ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L 257 (599)
|-+---|.|...|=-+ .+.+|.+++..++|||+..+.+++||++.+|..|++.++|+++.++|||. +.+.|
T Consensus 51 i~~~t~P~iGn~Gv~~--------~d~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR~-lt~~i 121 (379)
T 1a9x_B 51 IVTLTYPHIGNVGTND--------ADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRK-LTRLL 121 (379)
T ss_dssp EEEECSSBCCTTCCCG--------GGCSSSSCCBSEEECSBCCSCCCCTTCCSCHHHHHHHTTCEEEESSCHHH-HHHHH
T ss_pred eeEEcCCCccEEccCc--------hhhccccceEEEEEEccCCCCCCcccccCCHHHHHHHCCCccccCCCHHH-HHHHH
Confidence 3344456676555422 36899999999999999999999999999999999999999999999995 77889
Q ss_pred H--HHHHHHHHHc-CCCCCCCchhhHHHH-----HHHhhhcC-------CCC----------------ceEEEEEeecCC
Q 007533 258 R--KAHEAIFKVL-NLQGTTKEPLLKEWT-----SRAEICDG-------LHE----------------PVRIAMVGKYTG 306 (599)
Q Consensus 258 ~--g~~~~i~~~l-~l~~~~~~~~l~~W~-----~l~~~~~~-------~~~----------------~v~IaiVGkY~~ 306 (599)
| |.|++++..- ..+.....+.+..|. +++..++. +.. ..+|+++ +|+
T Consensus 122 R~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vi-D~G- 199 (379)
T 1a9x_B 122 REKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAY-DFG- 199 (379)
T ss_dssp HHHCCEEEEEEESSSCCHHHHHHHHHHCCCSTTCBCHHHHSCSSCEEECCCCCBTTTBSCCCCCGGGCCEEEEEE-ESS-
T ss_pred HhcCCeeEEEecCCCCCHHHHHHHHHhCCCccccCccceeCCCCCEEeCCCCcccccccccccccccCCCEEEEE-ECC-
Confidence 8 7775443210 000000000122222 12333221 111 4789999 586
Q ss_pred CcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh-ccCCCEEEeCCCCCCCch-hHHHHHHHH
Q 007533 307 LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGV-QGKILAAKY 384 (599)
Q Consensus 307 l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlVPGGfG~rg~-eg~i~aik~ 384 (599)
...|++++|+.+|+.+.+ .+.+. +. .+. ..++||||||||||++.. ...+.++++
T Consensus 200 ---~k~ni~r~L~~~G~~v~v----vp~~~-~~---------------e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~ 256 (379)
T 1a9x_B 200 ---AKRNILRMLVDRGCRLTI----VPAQT-SA---------------EDVLKMNPDGIFLSNGPGDPAPCDYAITAIQK 256 (379)
T ss_dssp ---CCHHHHHHHHHTTEEEEE----EETTC-CH---------------HHHHTTCCSEEEECCCSBCSTTCHHHHHHHHH
T ss_pred ---ChHHHHHHHHHCCCEEEE----EeccC-CH---------------HHHhhcCCCEEEEeCCCCChHHHHHHHHHHHH
Confidence 447899999999987643 22221 11 012 247999999999999864 678889999
Q ss_pred HHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhc
Q 007533 385 AREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKL 464 (599)
Q Consensus 385 are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~i 464 (599)
+.+.++|+||||||||+|+.++|+++.+++ .+|+|+ ++++...+.
T Consensus 257 ~~~~~~PILGIClG~QLLa~A~GG~v~k~~-----------------------~gh~g~-----n~pv~~~~~------- 301 (379)
T 1a9x_B 257 FLETDIPVFGICLGHQLLALASGAKTVKMK-----------------------FGHHGG-----NHPVKDVEK------- 301 (379)
T ss_dssp HTTSCCCEEEETHHHHHHHHHTTCCEEEEE-----------------------EEEEEE-----EEEEEETTT-------
T ss_pred HHHcCCCEEEECchHHHHHHHhCcEEEecc-----------------------cccccC-----ceeeEecCC-------
Confidence 999999999999999999999999986542 134444 455542221
Q ss_pred cCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEe-CCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 465 YGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKD-ETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 465 yg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s-~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
+...+ ..++|+|.|+++. + +.++.+++++ .|+. +|+++++++|+ +|+|||||+++.|.+..+||.+|+++
T Consensus 302 --g~v~i-ts~~H~~aV~~~~---L-p~~~~v~a~s~~Dg~-ieai~~~~~pi-~gVQFHPE~~~~p~d~~~Lf~~Fl~~ 372 (379)
T 1a9x_B 302 --NVVMI-TAQNHGFAVDEAT---L-PANLRVTHKSLFDGT-LQGIHRTDKPA-FSFQGNPEASPGPHDAAPLFDHFIEL 372 (379)
T ss_dssp --TEEEE-EEEEEEEEECSTT---C-CTTEEEEEEETTTCC-EEEEEESSSSE-EEESSCTTCSSSCSTTTHHHHHHHHH
T ss_pred --CcEEE-EecCccceEeccc---C-CCCeEEEEEeCCCCc-EEEEEECCCCE-EEEEeCCcCCCCcccHHHHHHHHHHH
Confidence 12223 4678999998653 3 6689999998 5676 99999999984 69999999999998889999999998
Q ss_pred Hhc
Q 007533 544 ACG 546 (599)
Q Consensus 544 a~~ 546 (599)
+.+
T Consensus 373 ~~~ 375 (379)
T 1a9x_B 373 IEQ 375 (379)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=239.45 Aligned_cols=210 Identities=20% Similarity=0.289 Sum_probs=145.4
Q ss_pred ceEEEEEeecCC----------CcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEE
Q 007533 295 PVRIAMVGKYTG----------LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGI 364 (599)
Q Consensus 295 ~v~IaiVGkY~~----------l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGI 364 (599)
++.|||...+.. ..-.+.+++++|+.+|+...+ ++..+-. . +.+.++.+|||
T Consensus 4 ~p~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~------lp~~~~~-----------~-~~~~l~~~DGl 65 (254)
T 3fij_A 4 KPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIA------LPIDDPS-----------T-AVQAISLVDGL 65 (254)
T ss_dssp CCEEEEEC------------------CHHHHHHHHHHTCEEEE------ECCCCGG-----------G-HHHHHHTCSEE
T ss_pred CCEEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCEEEE------EeCCCch-----------H-HHHHHhhCCEE
Confidence 357898865321 111245789999999987633 2221100 0 22457899999
Q ss_pred EeCCCCC-------CCch-----------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCC
Q 007533 365 LVPGGFG-------NRGV-----------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTK 426 (599)
Q Consensus 365 lVPGGfG-------~rg~-----------eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~ 426 (599)
|||||++ .+.. ..++.++++|+++++|+||||+|||+|+.++|+++.. +..+. ..
T Consensus 66 il~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a~Gg~v~~--~~~~~-~~---- 138 (254)
T 3fij_A 66 LLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQ--DISQV-ET---- 138 (254)
T ss_dssp EECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHTTCCEES--SGGGS-SS----
T ss_pred EECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceec--ccccc-cC----
Confidence 9999964 2211 2378999999999999999999999999999999853 22111 00
Q ss_pred CCeeeeCCCCCcCcCC-CccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCe
Q 007533 427 NPCVIFMPEGSKTHMG-GTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQR 505 (599)
Q Consensus 427 ~~vi~~mpe~~~~~~G-gtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~ 505 (599)
+. ..|+. ..+++|.+++.+.++ +.+.+.++....++.+ |.+.|. .+ +.|++++|++++|.
T Consensus 139 -~~--------~~h~~~~~~~~g~~~v~~~~~-s~l~~~~~~~~~v~~~--H~~~v~-----~l-~~g~~v~a~s~dg~- 199 (254)
T 3fij_A 139 -KA--------LQHLQRVDEQLGSHTIDIEPT-SELAKHHPNKKLVNSL--HHQFIK-----KL-APSFKVTARTADGM- 199 (254)
T ss_dssp -CC--------CCCBCCSCTTSCCEEEEECTT-SSGGGTCCTTEEECCB--CSCEES-----SC-CSSEEEEEEETTCC-
T ss_pred -cc--------ccccCCCCCccceEEEEeCCC-ChHHHhcCCcEEEEEe--ccchhh-----cc-CCCcEEEEEeCCCc-
Confidence 01 11221 235677889998887 6677777644345443 555553 34 78999999999996
Q ss_pred EEEEEeC-CCCeEEEEcccCCCcCCCCC-chHHHHHHHHHHhcch
Q 007533 506 MEIVELP-NHPYFIGVQFHPEYKSRPGK-PSPLFLGLIAAACGQL 548 (599)
Q Consensus 506 vE~iE~~-~hpffvGvQFHPE~ss~p~~-p~pLF~~Fv~aa~~~~ 548 (599)
+|+++++ ++||++|||||||+++++.. ..+||++|+++|....
T Consensus 200 ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~~~ 244 (254)
T 3fij_A 200 IEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTM 244 (254)
T ss_dssp EEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHSCC
T ss_pred EEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHHHH
Confidence 9999999 99988999999999998643 3789999999987643
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=214.24 Aligned_cols=189 Identities=21% Similarity=0.298 Sum_probs=135.4
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCC-CCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG-FGN 372 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGG-fG~ 372 (599)
.-+||.+++.|.+.. .++.++|+.+|+.+.+ ++..+ . + +.+.++|||||||| +++
T Consensus 12 ~~~~i~~id~~~~~~---~~~~~~l~~~G~~~~v------v~~~~-~-------~-------~~l~~~DglIl~GG~p~~ 67 (212)
T 2a9v_A 12 HMLKIYVVDNGGQWT---HREWRVLRELGVDTKI------VPNDI-D-------S-------SELDGLDGLVLSGGAPNI 67 (212)
T ss_dssp CCCBEEEEEESCCTT---CHHHHHHHHTTCBCCE------EETTS-C-------G-------GGGTTCSEEEEEEECSCG
T ss_pred ccceEEEEeCCCccH---HHHHHHHHHCCCEEEE------EeCCC-C-------H-------HHHhCCCEEEECCCCCCC
Confidence 457999997665432 3788999999987643 22211 0 1 34667999999999 777
Q ss_pred Cchh-HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 007533 373 RGVQ-GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451 (599)
Q Consensus 373 rg~e-g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~ 451 (599)
...+ ......++++++++|+||||+|||+|+.++|+++...+ .+++ |.++
T Consensus 68 ~~~~~~~~~l~~~~~~~~~PiLGIC~G~Qll~~~lGg~v~~~~-----------------------~~~~------G~~~ 118 (212)
T 2a9v_A 68 DEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAK-----------------------HPEF------GKTK 118 (212)
T ss_dssp GGTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEEE-----------------------EEEE------EEEE
T ss_pred CcccccchhHHHHHHhCCCCEEEEChHHHHHHHHhCCEEEcCC-----------------------Cccc------Ccee
Confidence 6432 23344567788999999999999999999998875421 0222 3456
Q ss_pred eEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 452 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 452 v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
+.+.++ +.+.+.++. .+..+|.|+|.+. .+ +.+++++|+++++. +++++++++| ++|+|||||++.++.
T Consensus 119 v~~~~~-~~l~~~~~~--~~~v~~~H~~~v~-----~l-~~~~~vlA~s~d~~-i~ai~~~~~~-i~gvQfHPE~~~~~~ 187 (212)
T 2a9v_A 119 VSVMHS-ENIFGGLPS--EITVWENHNDEII-----NL-PDDFTLAASSATCQ-VQGFYHKTRP-IYATQFHPEVEHTQY 187 (212)
T ss_dssp EEESCC-CGGGTTCCS--EEEEEEEEEEEEE-----SC-CTTEEEEEECSSCS-CSEEEESSSS-EEEESSCTTSTTSTT
T ss_pred eEECCC-ChhHhcCCC--ceEEEeEhhhhHh-----hC-CCCcEEEEEeCCCC-EEEEEECCCC-EEEEEeCCCCCCCcc
Confidence 666655 333333332 3445788998874 23 67899999999886 9999999887 579999999998654
Q ss_pred CchHHHHHHHHHHhcc
Q 007533 532 KPSPLFLGLIAAACGQ 547 (599)
Q Consensus 532 ~p~pLF~~Fv~aa~~~ 547 (599)
+.++|++|+++|..+
T Consensus 188 -g~~l~~~F~~~~~~~ 202 (212)
T 2a9v_A 188 -GRDIFRNFIGICASY 202 (212)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHh
Confidence 689999999987653
|
| >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=207.73 Aligned_cols=181 Identities=18% Similarity=0.266 Sum_probs=127.1
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc--CCCEEEeCCCCCCCch
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRGV 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIlVPGGfG~rg~ 375 (599)
|+|++.|.+. . .++.++|+.+|+++.+ +...+.+ + +.+. ++||||+|||+|++..
T Consensus 4 i~iid~~~s~--~-~~~~~~l~~~G~~~~v------~~~~~~~-------~-------~~~~~~~~dglil~gG~~~~~~ 60 (195)
T 1qdl_B 4 TLIIDNYDSF--V-YNIAQIVGELGSYPIV------IRNDEIS-------I-------KGIERIDPDRLIISPGPGTPEK 60 (195)
T ss_dssp EEEEECSCSS--H-HHHHHHHHHTTCEEEE------EETTTSC-------H-------HHHHHHCCSEEEECCCSSCTTS
T ss_pred EEEEECCCch--H-HHHHHHHHhCCCEEEE------EeCCCCC-------H-------HHHhhCCCCEEEECCCCCChhh
Confidence 9999766543 2 3788999999977643 2222110 0 1222 6999999999988754
Q ss_pred ---h-HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 007533 376 ---Q-GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451 (599)
Q Consensus 376 ---e-g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~ 451 (599)
. ....+++++ +.++|+||||+|||+|+.++|+++...+. ..+ |+ .++
T Consensus 61 ~~~~~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~~gg~v~~~~~----------------------~~~-g~-----~~~ 111 (195)
T 1qdl_B 61 REDIGVSLDVIKYL-GKRTPILGVCLGHQAIGYAFGAKIRRARK----------------------VFH-GK-----ISN 111 (195)
T ss_dssp HHHHTTHHHHHHHH-TTTSCEEEETHHHHHHHHHTTCEEEEEEE----------------------EEE-EE-----EEE
T ss_pred hhhhhHHHHHHHHh-cCCCcEEEEehHHHHHHHHhCCEEeccCC----------------------CcC-CC-----ceE
Confidence 2 234777775 77999999999999999999998854321 012 21 234
Q ss_pred eEEecCC--chhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEe-CCCCeEEEEEeCCCCeEEEEcccCCCcC
Q 007533 452 TYFQIKD--CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKD-ETSQRMEIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 452 v~l~~~~--s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s-~dg~~vE~iE~~~hpffvGvQFHPE~ss 528 (599)
+.+.+++ .++.. ++ ..+..++.|+|.|. .+ +.+++++|++ ++|. +++++++++| ++|+|||||++.
T Consensus 112 v~~~~~~~~~l~~~-~~--~~~~v~~~H~~~v~-----~l-~~~~~vla~s~~~g~-i~a~~~~~~~-~~gvQfHPE~~~ 180 (195)
T 1qdl_B 112 IILVNNSPLSLYYG-IA--KEFKATRYHSLVVD-----EV-HRPLIVDAISAEDNE-IMAIHHEEYP-IYGVQFHPESVG 180 (195)
T ss_dssp EEECCSSCCSTTTT-CC--SEEEEEEEEEEEEE-----CC-CTTEEEEEEESSSCC-EEEEEESSSS-EEEESSBTTSTT
T ss_pred EEECCCCHhHHHhc-CC--CceEEeccccchhh-----hC-CCCcEEEEEECCCCc-EEEEEeCCCC-EEEEecCCCCCC
Confidence 4444442 23333 32 23456788998884 23 6789999999 7886 9999999988 579999999998
Q ss_pred CCCCchHHHHHHHH
Q 007533 529 RPGKPSPLFLGLIA 542 (599)
Q Consensus 529 ~p~~p~pLF~~Fv~ 542 (599)
++ .+.++|++|++
T Consensus 181 ~~-~g~~l~~~f~~ 193 (195)
T 1qdl_B 181 TS-LGYKILYNFLN 193 (195)
T ss_dssp CT-THHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHh
Confidence 65 47899999987
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=203.20 Aligned_cols=183 Identities=22% Similarity=0.254 Sum_probs=127.2
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc--cCCCEEEeCCCCCCCc
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRG 374 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlVPGGfG~rg 374 (599)
.|+|++ |... ...++.++|+.+|+.+.+ ++..+ ++ +.+ .++||||+|||+ ++.
T Consensus 2 mi~iid-~~~~--~~~~~~~~l~~~G~~~~~------~~~~~--------~~-------~~~~~~~~dglil~Gg~-~~~ 56 (189)
T 1wl8_A 2 MIVIMD-NGGQ--YVHRIWRTLRYLGVETKI------IPNTT--------PL-------EEIKAMNPKGIIFSGGP-SLE 56 (189)
T ss_dssp EEEEEE-CSCT--THHHHHHHHHHTTCEEEE------EETTC--------CH-------HHHHHTCCSEEEECCCS-CTT
T ss_pred eEEEEE-CCCc--hHHHHHHHHHHCCCeEEE------EECCC--------Ch-------HHhcccCCCEEEECCCC-Chh
Confidence 489995 5422 245899999999987643 22211 00 122 469999999998 543
Q ss_pred hhH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 375 VQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 375 ~eg-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
..+ ...+++.+.+.++|+||||+|||+|+.++|+++..++. .++|+ ..+.
T Consensus 57 ~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~-----------------------~~~G~------~~~~ 107 (189)
T 1wl8_A 57 NTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEK-----------------------AEYSL------VEIE 107 (189)
T ss_dssp CCTTHHHHHHTGGGTCSCEEEETHHHHHHHHHHTCEEEECSC-----------------------CSCEE------EEEE
T ss_pred hhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHHhCCceecCCC-----------------------cccCc------eeEE
Confidence 333 46777777688999999999999999999998854321 23343 2333
Q ss_pred EecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCc
Q 007533 454 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 533 (599)
Q Consensus 454 l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p 533 (599)
+...++++..+ +. .+..+|.|...+. .+ +.+++++|++++|. +++++++++| ++|+|||||++..+ .+
T Consensus 108 ~~~~~~l~~~~-~~--~~~~~~~h~~~v~-----~l-~~~~~vla~s~~g~-i~a~~~~~~~-~~gvQfHPE~~~~~-~g 175 (189)
T 1wl8_A 108 IIDEXEIFKGL-PK--RLKVWESHMDEVK-----EL-PPKFKILARSETCP-IEAMKHEELP-IYGVQFHPEVAHTE-KG 175 (189)
T ss_dssp ESCC--CCTTS-CS--EEEEEECCSEEEE-----EC-CTTEEEEEEESSCS-CSEEEESSSC-EEEESSCTTSTTST-TH
T ss_pred EecCchHHhCC-CC--ceEEEEEeeeehh-----hC-CCCcEEEEEcCCCC-EEEEEeCCce-EEEEecCCCcCCCc-ch
Confidence 33332444332 22 3445687876653 34 67899999999986 9999999998 57999999998765 46
Q ss_pred hHHHHHHHHHHh
Q 007533 534 SPLFLGLIAAAC 545 (599)
Q Consensus 534 ~pLF~~Fv~aa~ 545 (599)
..+|++|+++|.
T Consensus 176 ~~l~~~f~~~~~ 187 (189)
T 1wl8_A 176 EEILRNFAKLCG 187 (189)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 899999999874
|
| >4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=211.63 Aligned_cols=199 Identities=17% Similarity=0.181 Sum_probs=120.4
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
||+|| ||+.. +..||.+||+++|+++.+ +. +| +.+.++||||+||| |++...
T Consensus 4 ~I~ii-D~g~~--n~~si~~al~~~G~~~~v------~~-----------~~-------~~l~~~D~lilPG~-g~~~~~ 55 (211)
T 4gud_A 4 NVVII-DTGCA--NISSVKFAIERLGYAVTI------SR-----------DP-------QVVLAADKLFLPGV-GTASEA 55 (211)
T ss_dssp CEEEE-CCCCT--THHHHHHHHHHTTCCEEE------EC-----------CH-------HHHHHCSEEEECCC-SCHHHH
T ss_pred EEEEE-ECCCC--hHHHHHHHHHHCCCEEEE------EC-----------CH-------HHHhCCCEEEECCC-CCHHHH
Confidence 69999 69854 578999999999998754 21 11 45778999999974 443221
Q ss_pred ----HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCC-CCcCcCCCccccCcee
Q 007533 377 ----GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSRR 451 (599)
Q Consensus 377 ----g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe-~~~~~~GgtmrLG~~~ 451 (599)
....+++.+++.++|+||||+|||+|+.++++++...... .+.-...+.++..+... ....++++ ..
T Consensus 56 ~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~~~~--~~gl~~~~~~v~~~~~~~~~~~~~~~------~~ 127 (211)
T 4gud_A 56 MKNLTERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKADEI--VQCLGLVDGEVRLLQTGDLPLPHMGW------NT 127 (211)
T ss_dssp HHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----CCC--EECCCSSSCEEEECCCTTSCSSEEEE------EC
T ss_pred HHHHHhcChHHHHHHcCCCEEEEchhHhHHHHHhCCcccccCCc--cccceeccceEEEcccCCcceeeccc------ee
Confidence 1223467788899999999999999999888876432211 11000111222221111 12233333 23
Q ss_pred eEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 452 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 452 v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
+.....++++..+.. ... .++.|+|.+++ +..++|.+++|. ..++.+.+.|+ +|+|||||.++.
T Consensus 128 ~~~~~~~~l~~~l~~-~~~--~~~~H~~~v~~---------~~~~~a~~~~g~-~~~~~v~~~~v-~GvQFHPE~s~~-- 191 (211)
T 4gud_A 128 VQVKEGHPLFNGIEP-DAY--FYFVHSFAMPV---------GDYTIAQCEYGQ-PFSAAIQAGNY-YGVQFHPERSSK-- 191 (211)
T ss_dssp CEECTTCGGGTTCCT-TCC--EEEEESEECCC---------CTTEEEEEESSS-EEEEEEEETTE-EEESSCGGGSHH--
T ss_pred eeeeccChhhcCCCC-CcE--EEEEeeEEeCC---------CCeEEEEecCCC-eEEEEEeCCCE-EEEEccCEecCc--
Confidence 333444355555542 333 45678887653 334677777886 56666667775 699999997532
Q ss_pred CchHHHHHHHHHHhcc
Q 007533 532 KPSPLFLGLIAAACGQ 547 (599)
Q Consensus 532 ~p~pLF~~Fv~aa~~~ 547 (599)
.+..||++|++.|.+.
T Consensus 192 ~G~~ll~nFl~~~ge~ 207 (211)
T 4gud_A 192 AGARLIQNFLELRGEN 207 (211)
T ss_dssp HHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHhccc
Confidence 3578999999876543
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-24 Score=211.14 Aligned_cols=185 Identities=16% Similarity=0.122 Sum_probs=121.9
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
.+|+|+ +|+.. .-.++.++|+.+|+++.+ .+++.+ .+ ++ ...++||||||||++++..
T Consensus 25 ~~I~ii-D~g~~--~~~~i~~~l~~~G~~~~v----v~~~~~-~~------------~l--~~~~~dglil~Gg~~~~~~ 82 (218)
T 2vpi_A 25 GAVVIL-DAGAQ--YGKVIDRRVRELFVQSEI----FPLETP-AF------------AI--KEQGFRAIIISGGPNSVYA 82 (218)
T ss_dssp TCEEEE-ECSTT--TTHHHHHHHHHTTCCEEE----ECTTCC-HH------------HH--HHHTCSEEEEEC-------
T ss_pred CeEEEE-ECCCc--hHHHHHHHHHHCCCEEEE----EECCCC-hH------------HH--hhcCCCEEEECCCCccccc
Confidence 479999 46532 124899999999987643 233221 10 01 1257999999999876432
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 376 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 376 eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
+......+.+++.++|+||||+|||+|+.++|++|...+. .++| .+++.+.
T Consensus 83 ~~~~~~~~~~~~~~~PilGIC~G~Qll~~~~GG~v~~~~~-----------------------~~~G------~~~v~~~ 133 (218)
T 2vpi_A 83 EDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSV-----------------------REDG------VFNISVD 133 (218)
T ss_dssp --CCCCCGGGGTSSCCEEEETHHHHHHHHHTTCCEEEEEE-----------------------CSCE------EEEEEEC
T ss_pred ccchhHHHHHHHcCCCEEEEcHHHHHHHHHhCCceEeCCC-----------------------Cccc------EEEEEEc
Confidence 1111123345678999999999999999999998854321 1233 4566666
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
++ +.+.+.++.. ....+.|+|.|. .+ +.+++++|++ ++ .+++++++++| ++|+|||||++.++. +.+
T Consensus 134 ~~-~~l~~~l~~~--~~v~~~H~~~v~-----~l-~~~~~vlA~s-~~-~i~ai~~~~~~-i~gvQfHPE~~~~~~-g~~ 200 (218)
T 2vpi_A 134 NT-CSLFRGLQKE--EVVLLTHGDSVD-----KV-ADGFKVVARS-GN-IVAGIANESKK-LYGAQFHPEVGLTEN-GKV 200 (218)
T ss_dssp TT-SGGGTTCCSE--EEEEECSEEEES-----SC-CTTCEEEEEE-TT-EEEEEEETTTT-EEEESSCTTSTTSTT-HHH
T ss_pred cC-ChhHhcCCCC--cEEeehhhhHhh-----hc-CCCCEEEEEc-CC-eEEEEEECCCC-EEEEEcCCCCCCChh-HHH
Confidence 65 4444444322 334678998885 23 6789999998 55 59999999888 569999999998764 789
Q ss_pred HHHHHH-HHH
Q 007533 536 LFLGLI-AAA 544 (599)
Q Consensus 536 LF~~Fv-~aa 544 (599)
||++|+ ++|
T Consensus 201 l~~~F~~~~~ 210 (218)
T 2vpi_A 201 ILKNFLYDIA 210 (218)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHh
Confidence 999999 554
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-23 Score=217.94 Aligned_cols=205 Identities=16% Similarity=0.148 Sum_probs=128.3
Q ss_pred ceEEEEEeecCCCc------ch--HHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEe
Q 007533 295 PVRIAMVGKYTGLS------DA--YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILV 366 (599)
Q Consensus 295 ~v~IaiVGkY~~l~------Da--Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlV 366 (599)
++.|||........ -. ..|++++|+.+|+.+.+ .+.+. +. ..+.+.+.++|||||
T Consensus 30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~v----v~~~~-~~------------~~i~~~l~~~dglil 92 (315)
T 1l9x_A 30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVP----VRLDL-TE------------KDYEILFKSINGILF 92 (315)
T ss_dssp CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEE----ECSSC-CH------------HHHHHHHHHSSEEEE
T ss_pred CCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEE----EecCC-CH------------HHHHHHHhcCCEEEE
Confidence 47899997543211 12 23789999999987643 22221 11 112234678999999
Q ss_pred CCCCCCCchh----HHHHHHHHHHHc-----CCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCC
Q 007533 367 PGGFGNRGVQ----GKILAAKYAREH-----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS 437 (599)
Q Consensus 367 PGGfG~rg~e----g~i~aik~are~-----~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~ 437 (599)
|||+++.... ....+++.+++. ++|+||||+|||+|+.++|+++.... . .+.
T Consensus 93 ~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~-~--~~~---------------- 153 (315)
T 1l9x_A 93 PGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTA-T--DTV---------------- 153 (315)
T ss_dssp CCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEE-E--EEE----------------
T ss_pred eCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcccccc-c--ccc----------------
Confidence 9999874211 123455555555 69999999999999999999853211 0 000
Q ss_pred cCcCCCccccCceeeEEe---cCCchhhhccCC-------ceeEEeeeeeeeeeCchhhhh--hccCCeEEEEEeCCCCe
Q 007533 438 KTHMGGTMRLGSRRTYFQ---IKDCKSAKLYGN-------RTFIDERHRHRYEVNPDMIAR--LENAGLSFTGKDETSQR 505 (599)
Q Consensus 438 ~~~~GgtmrLG~~~v~l~---~~~s~l~~iyg~-------~~~I~erHrHrYeVnp~~v~~--le~~Gl~~sa~s~dg~~ 505 (599)
|. ..++... ++ +.+.+.++. ...+..+ +|+|.|++++++. ..+.|++++|+++||.
T Consensus 154 ----g~-----~~p~~~~~~~~~-s~L~~~~~~~~~~~l~~~~~~~~-~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg~- 221 (315)
T 1l9x_A 154 ----DV-----AMPLNFTGGQLH-SRMFQNFPTELLLSLAVEPLTAN-FHKWSLSVKNFTMNEKLKKFFNVLTTNTDGK- 221 (315)
T ss_dssp ----EE-----EECCEECSTTTT-CSTTTTSCHHHHHHHHHSCCEEE-EEEEECBHHHHHTCHHHHHHEEEEEEEESSS-
T ss_pred ----CC-----CCCeeeccCCCC-ChHHHhcChhhhhhccccceEEE-hhhhhcCccccccccccCCCCEEEEEcCCCC-
Confidence 11 1122222 22 333333321 1123334 8999999887654 2267899999999886
Q ss_pred EEEE---EeCCCCeEEEEcccCCCcC---C-----CC------CchHHHHHHHHHHhcch
Q 007533 506 MEIV---ELPNHPYFIGVQFHPEYKS---R-----PG------KPSPLFLGLIAAACGQL 548 (599)
Q Consensus 506 vE~i---E~~~hpffvGvQFHPE~ss---~-----p~------~p~pLF~~Fv~aa~~~~ 548 (599)
+|++ ++++.| ++|||||||++. + |+ ...+||.+|+++|.+..
T Consensus 222 ve~i~~i~~~~~~-i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~~ 280 (315)
T 1l9x_A 222 IEFISTMEGYKYP-VYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNN 280 (315)
T ss_dssp CEEEEEEEESSSC-EEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred EEEEEEeccCCCC-EEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666 566667 679999999975 1 22 23499999999997644
|
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-23 Score=229.80 Aligned_cols=212 Identities=19% Similarity=0.285 Sum_probs=144.0
Q ss_pred eEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc--cCCCEEEeCCCCCC
Q 007533 296 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 372 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlVPGGfG~ 372 (599)
-+|+|+ ||++ .|. +|.++|+.+|+.+.+ .+.+ .++ +.+ .++|||||||||++
T Consensus 8 ~~Ilil-D~Gs---~~~~~I~r~lre~Gv~~ei----v~~~-~~~----------------~~i~~~~~dgIIlsGGp~s 62 (556)
T 3uow_A 8 DKILVL-NFGS---QYFHLIVKRLNNIKIFSET----KDYG-VEL----------------KDIKDMNIKGVILSGGPYS 62 (556)
T ss_dssp CEEEEE-ESSC---TTHHHHHHHHHHTTCCEEE----EETT-CCG----------------GGTTTSCEEEEEECCCSCC
T ss_pred CEEEEE-ECCC---ccHHHHHHHHHHCCCeEEE----EECC-CCH----------------HHHhhcCCCEEEECCCCCc
Confidence 579999 5874 455 899999999988744 2322 111 122 37899999999988
Q ss_pred CchhH----HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccC-------CCC---CCCeeeeCCCCCc
Q 007533 373 RGVQG----KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD-------PNT---KNPCVIFMPEGSK 438 (599)
Q Consensus 373 rg~eg----~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~-------~~~---~~~vi~~mpe~~~ 438 (599)
+..++ ...+++++.+.++|+||||+|||+|+.++|++|.... +.|+. +.. .+|++..|++..
T Consensus 63 ~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~---~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~- 138 (556)
T 3uow_A 63 VTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSK---TSEYGCTDVNILRNDNINNITYCRNFGDSS- 138 (556)
T ss_dssp TTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEE---EEEEEEEEEEECCTTGGGGCSGGGGC---C-
T ss_pred ccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCC---CcccCCcceeeccCcccccccceecccccc-
Confidence 64433 2345677788899999999999999999999885432 22322 111 245566665432
Q ss_pred CcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEE
Q 007533 439 THMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFI 518 (599)
Q Consensus 439 ~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffv 518 (599)
+||||. ...+.+...++++..+++. ....++.|++.|. .+ +.|+.++|.++++. +++++++++++ +
T Consensus 139 ~~mg~~----~n~~~~~~~~~Lf~gl~~~--~~~v~~~H~d~V~-----~l-p~g~~vlA~s~~~~-i~ai~~~~~~i-~ 204 (556)
T 3uow_A 139 SAMDLY----SNYKLMNETCCLFENIKSD--ITTVWMNHNDEVT-----KI-PENFYLVSSSENCL-ICSIYNKEYNI-Y 204 (556)
T ss_dssp CHHHHH----TTSCCCC--CGGGTTCCSS--EEEEEEEEEEEEE-----EC-CTTCEEEEEETTEE-EEEEEETTTTE-E
T ss_pred cccccc----cccccccccchhhcccccC--ceEEEEEccceee-----cc-CCCcEEEEEeCCCC-EEEEEECCCCE-E
Confidence 455552 1222222232566666432 3445677887763 23 77999999998885 99999998885 6
Q ss_pred EEcccCCCcCCCCCchHHHHHHHHHHhcchhhh
Q 007533 519 GVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTL 551 (599)
Q Consensus 519 GvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~ 551 (599)
|+|||||++.+| .+.++|++|+..++++..+|
T Consensus 205 GvQFHPE~~~~~-~G~~ll~nFl~~i~g~~~~~ 236 (556)
T 3uow_A 205 GVQYHPEVYESL-DGELMFYNFAYNICKCKKQF 236 (556)
T ss_dssp EESSCTTSTTST-THHHHHHHHHTTTTCCCC-C
T ss_pred EEEcCCCCCccc-cchHHHHHHHHHhhcccccc
Confidence 999999999887 58999999997777654433
|
| >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-23 Score=197.41 Aligned_cols=183 Identities=16% Similarity=0.206 Sum_probs=115.0
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
+||+|++- .++|.+++++|+.+|+.+.+ ++.. +.+.++|||++|||+++...
T Consensus 1 m~i~vl~~----~g~~~~~~~~l~~~G~~~~~------~~~~------------------~~~~~~dglil~GG~~~~~~ 52 (186)
T 2ywj_A 1 MIIGVLAI----QGDVEEHEEAIKKAGYEAKK------VKRV------------------EDLEGIDALIIPGGESTAIG 52 (186)
T ss_dssp CEEEEECS----SSCCHHHHHHHHHTTSEEEE------ECSG------------------GGGTTCSEEEECCSCHHHHH
T ss_pred CEEEEEec----CcchHHHHHHHHHCCCEEEE------ECCh------------------HHhccCCEEEECCCCchhhh
Confidence 58999952 45899999999999986532 3221 24678899999999875421
Q ss_pred hH--HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 376 QG--KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 376 eg--~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
+. ....++..+++++|+||||+|||+|+.++|+++-++.- + +.. +..+ . .|.. ...+..
T Consensus 53 ~~~~~~~~~~~i~~~~~PilGIC~G~Qll~~~~gg~~~~lg~-----~----~~~-~~~~-----~-~~~~--~~~~~~- 113 (186)
T 2ywj_A 53 KLMKKYGLLEKIKNSNLPILGTCAGMVLLSKGTGINQILLEL-----M----DIT-VKRN-----A-YGRQ--VDSFEK- 113 (186)
T ss_dssp HHHHHTTHHHHHHTCCCCEEEETHHHHHHSSCCSSCCCCCCC-----S----SEE-EETT-----T-TCSS--SCCEEE-
T ss_pred hhhhccCHHHHHHhcCCcEEEECHHHHHHHHHhCCCcCccCC-----C----cee-EEec-----c-CCCc--ccceec-
Confidence 10 11123344478999999999999999998876422110 0 000 0000 0 0110 111111
Q ss_pred EecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCc
Q 007533 454 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 533 (599)
Q Consensus 454 l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p 533 (599)
+ .++..+ ..+..++.|+|.|+ .+++.+++++|++ ++. +|+++++ +++|+|||||+++ ++
T Consensus 114 ---~-~~~~~~----~~~~~~~~H~~~v~-----~l~~~~~~v~a~s-d~~-~~a~~~~---~~~gvQfHPE~~~---~g 172 (186)
T 2ywj_A 114 ---E-IEFKDL----GKVYGVFIRAPVVD-----KILSDDVEVIARD-GDK-IVGVKQG---KYMALSFHPELSE---DG 172 (186)
T ss_dssp ---E-EEETTT----EEEEEEESSCCEEE-----EECCTTCEEEEEE-TTE-EEEEEET---TEEEESSCGGGST---TH
T ss_pred ---c-cccccC----CcEEEEEEecceee-----ecCCCCeEEEEEE-CCE-EEEEeeC---CEEEEECCCCcCC---ch
Confidence 1 122222 22334566777764 2225789999998 654 9999864 4789999999876 36
Q ss_pred hHHHHHHHHHHhc
Q 007533 534 SPLFLGLIAAACG 546 (599)
Q Consensus 534 ~pLF~~Fv~aa~~ 546 (599)
.++|++|+++|.+
T Consensus 173 ~~l~~~F~~~~~~ 185 (186)
T 2ywj_A 173 YKVYKYFVENCVK 185 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhh
Confidence 8999999998854
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-23 Score=228.71 Aligned_cols=195 Identities=19% Similarity=0.280 Sum_probs=132.5
Q ss_pred ceEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEE-ecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 295 PVRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDW-IPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~w-i~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
..+|+|+ ||++ .|. ++.++|+.+|+.+.+. .| .+.+++ .-.++|||||||||++
T Consensus 10 ~~~I~Il-D~g~---~~~~~i~r~lr~~Gv~~~i~---p~~~~~~~i-----------------~~~~~dgIILsGGp~s 65 (527)
T 3tqi_A 10 QHRILIL-DFGS---QYAQLIARRVREIGVYCELM---PCDIDEETI-----------------RDFNPHGIILSGGPET 65 (527)
T ss_dssp CSEEEEE-ECSC---TTHHHHHHHHHHHTCEEEEE---ETTCCSSSS-----------------TTTCCSEEEECCCCC-
T ss_pred CCeEEEE-ECCC---ccHHHHHHHHHHCCCeEEEE---ECCCCHHHH-----------------HhcCCCEEEECCcCcc
Confidence 3589999 5764 454 8999999999887541 11 111111 0126799999999998
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceee
Q 007533 373 RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 452 (599)
Q Consensus 373 rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v 452 (599)
...++...+.+.+.+.++|+||||+|||+|+.++|++|.... . .+ +|.+.+
T Consensus 66 v~~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~---~--------------------~e------~G~~~v 116 (527)
T 3tqi_A 66 VTLSHTLRAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTA---K--------------------AE------FGHAQL 116 (527)
T ss_dssp --------CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC----------------------------C------EEEEEE
T ss_pred cccCCChhhHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCC---C--------------------cc------ccceEE
Confidence 765565666677778899999999999999999999884321 0 12 234556
Q ss_pred EEecCCchhhhccCC-----ceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 453 YFQIKDCKSAKLYGN-----RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 453 ~l~~~~s~l~~iyg~-----~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
.+.+++.++..+... ......++.|+|.|. .+ +.|++++|.++++. +++++++++|+ +|+|||||++
T Consensus 117 ~~~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~-----~l-p~g~~v~A~s~~~~-i~ai~~~~~~~-~GvQFHPE~~ 188 (527)
T 3tqi_A 117 RVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVS-----EL-PPGFEATACTDNSP-LAAMADFKRRF-FGLQFHPEVT 188 (527)
T ss_dssp EESSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBC-----SC-CTTCEEEEEETTEE-EEEEECSSSCE-EEESBCSSST
T ss_pred EEcCCChhhcCCccccccccccceEEEEEcccchh-----cc-CCCCEEEEEeCCCc-EEEEEcCCCCE-EEEEeccccc
Confidence 665543455555421 113456777887763 34 78999999998765 99999999995 5999999999
Q ss_pred CCCCCchHHHHHHHHHHhcchhhh
Q 007533 528 SRPGKPSPLFLGLIAAACGQLDTL 551 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~aa~~~~~~~ 551 (599)
.++ .+..+|.+|+..++++...|
T Consensus 189 ~t~-~G~~ll~nF~~~i~~~~~~w 211 (527)
T 3tqi_A 189 HTP-QGHRILAHFVIHICQCIPNW 211 (527)
T ss_dssp TST-THHHHHHHHHHTTSCCCCCC
T ss_pred ccc-ccchhhhhhhhhcccccchh
Confidence 887 47899999998777655444
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=230.13 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=127.9
Q ss_pred ceEEEEEeecCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 295 PVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY-~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
..+|+|++.|. +| .++.++|+..|+.+.+ .+.+.. ..+.++|||||+||+|++
T Consensus 446 Gk~IlviD~gd----sf~~~l~~~l~~~G~~v~V----v~~d~~------------------~~~~~~DgIIlsGGPg~p 499 (645)
T 3r75_A 446 GCRALIVDAED----HFTAMIAQQLSSLGLATEV----CGVHDA------------------VDLARYDVVVMGPGPGDP 499 (645)
T ss_dssp TCEEEEEESSC----THHHHHHHHHHHTTCEEEE----EETTCC------------------CCGGGCSEEEECCCSSCT
T ss_pred CCEEEEEECCc----cHHHHHHHHHHHCCCEEEE----EECCCc------------------ccccCCCEEEECCCCCCh
Confidence 46899996444 44 4899999999976543 343321 124578999999999987
Q ss_pred chhH------HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcccc
Q 007533 374 GVQG------KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 447 (599)
Q Consensus 374 g~eg------~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrL 447 (599)
...+ +..+++++++.++|+||||+|||+|+.++|++|...+. ++.|+
T Consensus 500 ~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~-----------------------~~~G~---- 552 (645)
T 3r75_A 500 SDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREV-----------------------PNQGI---- 552 (645)
T ss_dssp TCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEE-----------------------EEEEE----
T ss_pred hhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCCC-----------------------ccccc----
Confidence 6433 67889999999999999999999999999999864321 23343
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCc--hh-hhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccC
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNP--DM-IARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHP 524 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp--~~-v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHP 524 (599)
.+++.+... +++..+| |+|.++. +. ...+ +.|++++|.++++. ++++++++ ++||||||
T Consensus 553 -~~~i~~~~~-~l~~~~~-----------~~~~v~~~h~~~~~~l-p~g~~v~A~s~dg~-i~Ai~~~~---~~GVQFHP 614 (645)
T 3r75_A 553 -QVEIDLFGQ-RERVGFY-----------NTYVAQTVRDEMDVDG-VGTVAISRDPRTGE-VHALRGPT---FSSMQFHA 614 (645)
T ss_dssp -EEEEEETTE-EEEEEEE-----------EEEEEBCSCSEEEETT-TEEEEEEECTTTCB-EEEEEETT---EEEESSBT
T ss_pred -ceEEeeecC-cceecCC-----------CcEEEEEehhhccccC-CCCeEEEEEcCCCc-EEEEEcCC---EEEEEeCC
Confidence 233333221 2333333 3343321 11 2223 67999999998886 99999875 47999999
Q ss_pred CCcCCCCCchHHHHHHHHHHhcc
Q 007533 525 EYKSRPGKPSPLFLGLIAAACGQ 547 (599)
Q Consensus 525 E~ss~p~~p~pLF~~Fv~aa~~~ 547 (599)
|+..++. +++||.+|++++...
T Consensus 615 E~~~t~~-G~~Ll~nFl~~~~~~ 636 (645)
T 3r75_A 615 ESVLTVD-GPRILGEAITHAIRR 636 (645)
T ss_dssp TSTTCTT-HHHHHHHHHHHHTTT
T ss_pred eecCCcc-hHHHHHHHHHHHHhc
Confidence 9988774 899999999998653
|
| >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=188.90 Aligned_cols=189 Identities=17% Similarity=0.155 Sum_probs=118.3
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc--CCCEEEeCCCCCCC
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNR 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIlVPGGfG~r 373 (599)
++|+||+.|++. -.++.++|+.+|+++.+ .+.+. +++ ++.+.+. +.|++|++||+|++
T Consensus 1 ~~i~iiDn~~s~---~~~i~~~l~~~G~~~~v----~~~~~-~~~------------~i~~~l~~~~~~~iil~gGpg~~ 60 (192)
T 1i1q_B 1 ADILLLDNIDSF---TWNLADQLRTNGHNVVI----YRNHI-PAQ------------TLIDRLATMKNPVLMLSPGPGVP 60 (192)
T ss_dssp CEEEEEECSCSS---HHHHHHHHHHTTCEEEE----EETTS-CSH------------HHHHHHTTCSSEEEEECCCSSCG
T ss_pred CcEEEEECCccH---HHHHHHHHHHCCCeEEE----EECCC-CHH------------HHHHHhhhccCCeEEECCCCcCc
Confidence 479999756532 24789999999977643 12221 111 1112222 34579999999997
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 374 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 374 g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
...+....+..+.+.++|+||||+|||+|+.++|+++..... ...|. ....
T Consensus 61 ~~~~~~~~l~~~~~~~~PilGIC~G~Qll~~~~Gg~v~~~~~-----------------------~~~g~------~~~~ 111 (192)
T 1i1q_B 61 SEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGE-----------------------ILHGK------ATSI 111 (192)
T ss_dssp GGSTTHHHHHHHHBTTBCEEEETHHHHHHHHHTSCCCCC--------------------------CCSSE------EEEE
T ss_pred hhCchHHHHHHHHhcCCCEEEECcChHHHHHHhCCEEEeCCC-----------------------cEecc------eeEE
Confidence 554433333334567899999999999999999887643210 01121 1111
Q ss_pred EecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCc
Q 007533 454 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 533 (599)
Q Consensus 454 l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p 533 (599)
....++++..+- . .....+.|+|.+. .+ +.|++++|.+ ++ .++++++++.| ++|+|||||++..+ .+
T Consensus 112 ~~~~~~l~~~~~-~--~~~v~~~H~~~v~-----~l-p~~~~v~a~~-~~-~~~ai~~~~~~-~~gvQfHPE~~~~~-~g 178 (192)
T 1i1q_B 112 EHDGQAMFAGLA-N--PLPVARYHSLVGS-----NV-PAGLTINAHF-NG-MVMAVRHDADR-VCGFQFHPESILTT-QG 178 (192)
T ss_dssp EECCCGGGTTSC-S--SEEEEECCC---C-----CC-CTTCEEEEEE-TT-EEEEEEETTTT-EEEESSBTTSTTCT-TH
T ss_pred ecCCChHHhcCC-C--CcEEEechhhHhh-----hC-CCccEEEECC-CC-cEEEEEECCCC-EEEEEccCcccCCc-cc
Confidence 122224444442 2 2345677887653 33 6788898854 45 49999999888 56999999998765 47
Q ss_pred hHHHHHHHHHHhc
Q 007533 534 SPLFLGLIAAACG 546 (599)
Q Consensus 534 ~pLF~~Fv~aa~~ 546 (599)
..+|++|++.+..
T Consensus 179 ~~il~nf~~~~~~ 191 (192)
T 1i1q_B 179 ARLLEQTLAWAQQ 191 (192)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 8999999987643
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=196.38 Aligned_cols=189 Identities=16% Similarity=0.116 Sum_probs=128.6
Q ss_pred hcCCCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecC-CCCCCccccCCchhhhHHHHhccCCCEEEeC
Q 007533 289 CDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPA-CDLEDATEKENPDAYKAAWKLLKGADGILVP 367 (599)
Q Consensus 289 ~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s-~~le~~~~~~~p~~y~~a~~~L~~~DGIlVP 367 (599)
+..-...++|.++-.+... .-.++.++|+..|+++.+ ...+. +.+ | +.+.++||||+|
T Consensus 6 ~~~~~~~~~~~~i~~~~~~--~~~~i~~~l~~~G~~v~v----~~~~~~~~~--------~-------~~l~~~Dglil~ 64 (239)
T 1o1y_A 6 IHHHHHHVRVLAIRHVEIE--DLGMMEDIFREKNWSFDY----LDTPKGEKL--------E-------RPLEEYSLVVLL 64 (239)
T ss_dssp ----CCCCEEEEECSSTTS--SCTHHHHHHHHTTCEEEE----ECGGGTCCC--------S-------SCGGGCSEEEEC
T ss_pred cccccceeEEEEEECCCCC--CchHHHHHHHhCCCcEEE----eCCcCcccc--------c-------cchhcCCEEEEC
Confidence 3344567899999544322 344788899999977642 12221 111 1 346789999999
Q ss_pred CCCCCCc-------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCc
Q 007533 368 GGFGNRG-------VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTH 440 (599)
Q Consensus 368 GGfG~rg-------~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~ 440 (599)
||+++.- ......+++++.++++|+||||+|||+|+.++|+++...+. -.+
T Consensus 65 GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~----------------------g~~ 122 (239)
T 1o1y_A 65 GGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKN----------------------GEE 122 (239)
T ss_dssp CCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTT----------------------CCE
T ss_pred CCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCC----------------------CCc
Confidence 9986531 23578899999999999999999999999999988754210 012
Q ss_pred CCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEE
Q 007533 441 MGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGV 520 (599)
Q Consensus 441 ~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGv 520 (599)
.|.+++...++ +.+.+.++. .+..+|.|+|.+ .+ +.++.++|.++++. +|++++++ ++|+
T Consensus 123 ------~G~~~v~~~~~-~~l~~~~~~--~~~~~~~H~~~v------~l-p~~~~vlA~s~~~~-iea~~~~~---i~gv 182 (239)
T 1o1y_A 123 ------IGWYFVEKVSD-NKFFREFPD--RLRVFQWHGDTF------DL-PRRATRVFTSEKYE-NQGFVYGK---AVGL 182 (239)
T ss_dssp ------EEEEEEEECCC-CGGGTTSCS--EEEEEEEESEEE------CC-CTTCEEEEECSSCS-CSEEEETT---EEEE
T ss_pred ------cccEEEEECCC-CchHHhCCC--CceeEeecCCcc------cc-CCCCEEEEEcCCCC-EEEEEECC---EEEE
Confidence 23455655444 333333332 345678899887 23 67899999998876 89999985 6799
Q ss_pred cccCCCcCCCCCchHHHHHHHHHHhc
Q 007533 521 QFHPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 521 QFHPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
|||||++. .++.+|++....
T Consensus 183 QfHPE~~~------~~~~~~~~~~~~ 202 (239)
T 1o1y_A 183 QFHIEVGA------RTMKRWIEAYKD 202 (239)
T ss_dssp SSBSSCCH------HHHHHHHHHTHH
T ss_pred EeCccCCH------HHHHHHHHHhHH
Confidence 99999953 488888876544
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=224.04 Aligned_cols=191 Identities=17% Similarity=0.272 Sum_probs=129.8
Q ss_pred eEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 296 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
.+|+|+ +|++ .|. ++.++|+.+|+.+.+ .+.+. +.+ ++ +.+ ++|||||||||++..
T Consensus 8 ~~IlIl-D~g~---~~~~~i~r~lr~~G~~~~i----~p~~~-~~~------------~i-~~~-~~dgiILsGGp~s~~ 64 (525)
T 1gpm_A 8 HRILIL-DFGS---QYTQLVARRVRELGVYCEL----WAWDV-TEA------------QI-RDF-NPSGIILSGGPESTT 64 (525)
T ss_dssp SEEEEE-ECSC---TTHHHHHHHHHHTTCEEEE----EESCC-CHH------------HH-HHH-CCSEEEECCCSSCTT
T ss_pred CEEEEE-ECCC---ccHHHHHHHHHHCCCEEEE----EECCC-CHH------------HH-hcc-CCCEEEECCcCcccc
Confidence 589999 5774 344 789999999987643 22221 110 01 112 679999999998753
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 375 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.++...+.+.+.+.++|+||||+|||+|+.++|++|.... . .+.| .+.+.+
T Consensus 65 ~~~~~~~~~~~~~~g~PvLGIC~G~Qlla~~~GG~V~~~~---~--------------------~e~G------~~~v~~ 115 (525)
T 1gpm_A 65 EENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASN---E--------------------REFG------YAQVEV 115 (525)
T ss_dssp STTCCCCCGGGGTSSSCEEEETHHHHHHHHHHTCEEECCS---S--------------------CEEE------EEEEEE
T ss_pred ccCCcchHHHHHHCCCCEEEEChHHHHHHHHcCCEEEeCC---C--------------------cccc------eEEEEe
Confidence 3222222355667899999999999999999999985432 1 1223 344555
Q ss_pred ecCCchhhhccCCc------eeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcC
Q 007533 455 QIKDCKSAKLYGNR------TFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 455 ~~~~s~l~~iyg~~------~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss 528 (599)
.+++.++..+ +.. .....++.|+|.|. .+ +.|++++|.++++. ++++++++++ ++|+|||||++.
T Consensus 116 ~~~~~L~~~l-~~~~~~~~~~~~~v~~~H~~~V~-----~l-p~g~~v~A~s~~~~-i~ai~~~~~~-i~gvQFHPE~~~ 186 (525)
T 1gpm_A 116 VNDSALVRGI-EDALTADGKPLLDVWMSHGDKVT-----AI-PSDFITVASTESCP-FAIMANEEKR-FYGVQFHPEVTH 186 (525)
T ss_dssp CSCCTTTTTC-CSEECTTSCEEEEEEEEECSEEE-----EC-CTTCEEEEECSSCS-CSEEEETTTT-EEEESBCTTSTT
T ss_pred CCCCHhhccC-ccccccccccceEEEEEccceee-----eC-CCCCEEEEECCCCC-EEEEEECCCC-EEEEecCCCCCc
Confidence 4442334333 220 12334567777663 34 78999999998886 9999999888 569999999998
Q ss_pred CCCCchHHHHHHHHHHhcch
Q 007533 529 RPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 529 ~p~~p~pLF~~Fv~aa~~~~ 548 (599)
+|. +..+|.+|+..++++.
T Consensus 187 ~~~-g~~ll~nF~~~i~~~~ 205 (525)
T 1gpm_A 187 TRQ-GMRMLERFVRDICQCE 205 (525)
T ss_dssp STT-HHHHHHHHHHTTSCCC
T ss_pred chh-HHHHHHHHHHhhhhcc
Confidence 874 8999999997665543
|
| >3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=186.13 Aligned_cols=186 Identities=17% Similarity=0.156 Sum_probs=123.8
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
++|+|+ .|.... ...++.++|+.+|+.+.+ +... +.+.++||||||||++...
T Consensus 3 ~~i~il-~~~~~~-~~~~~~~~l~~~g~~~~~------~~~~------------------~~~~~~d~lil~Gg~~~~~~ 56 (213)
T 3d54_D 3 PRACVV-VYPGSN-CDRDAYHALEINGFEPSY------VGLD------------------DKLDDYELIILPGGFSYGDY 56 (213)
T ss_dssp CEEEEE-CCTTEE-EHHHHHHHHHTTTCEEEE------ECTT------------------CCCSSCSEEEECEECGGGGC
T ss_pred cEEEEE-EcCCCC-ccHHHHHHHHHCCCEEEE------EecC------------------CCcccCCEEEECCCCchhhh
Confidence 589999 465432 235789999999876533 2221 1356889999999965321
Q ss_pred --------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 375 --------VQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 375 --------~eg~i~aik~are~~iP~LGICLGmQll~ie--fgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
......+++.+.++++|+||||+|||+|+.+ +++++... +. ...+.|
T Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~--------------------~~-~~~~~g-- 113 (213)
T 3d54_D 57 LRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQN--------------------SS-GKFICK-- 113 (213)
T ss_dssp SSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECC--------------------SS-SSCBCC--
T ss_pred hccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecC--------------------CC-CceEee--
Confidence 1346788888888999999999999999987 44444211 00 001333
Q ss_pred cccCceeeEEe-cCCchhhhccCCceeEEeeeee---eeeeCchhhhhhccCCeEEEEEeCC--C--CeEEEEEeCCCCe
Q 007533 445 MRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRH---RYEVNPDMIARLENAGLSFTGKDET--S--QRMEIVELPNHPY 516 (599)
Q Consensus 445 mrLG~~~v~l~-~~~s~l~~iyg~~~~I~erHrH---rYeVnp~~v~~le~~Gl~~sa~s~d--g--~~vE~iE~~~hpf 516 (599)
.+.+.+. ++ +.+.+.++....+.....| +|.+.| .++.++|++++ | ..+|++++++.+
T Consensus 114 ----~~~v~~~~~~-~~l~~~~~~~~~~~~~~~H~~~s~~~~~--------~~~~~~a~~~~~ng~~~~i~a~~~~~~~- 179 (213)
T 3d54_D 114 ----WVDLIVENND-TPFTNAFEKGEKIRIPIAHGFGRYVKID--------DVNVVLRYVKDVNGSDERIAGVLNESGN- 179 (213)
T ss_dssp ----EEEEEECCCS-STTSTTSCTTCEEEEECCBSSCEEECSS--------CCEEEEEESSCSSCCGGGEEEEECSSSC-
T ss_pred ----eEEEEeCCCC-CceeeccCCCCEEEEEeecCceEEEecC--------CCcEEEEEcCCCCCCccceeEEEcCCCC-
Confidence 3556665 34 3343333322234332345 888753 47888898766 6 459999997666
Q ss_pred EEEEcccCCCcCCC----CCchHHHHHHHHHH
Q 007533 517 FIGVQFHPEYKSRP----GKPSPLFLGLIAAA 544 (599)
Q Consensus 517 fvGvQFHPE~ss~p----~~p~pLF~~Fv~aa 544 (599)
++|+|||||++... .....||++|++++
T Consensus 180 ~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~ 211 (213)
T 3d54_D 180 VFGLMPHPERAVEELIGGEDGKKVFQSILNYL 211 (213)
T ss_dssp EEEECSCSTTTTSTTTTCSTTSHHHHHHHHHC
T ss_pred EEEEeCCHHHhcCHhhhcCccHHHHHHHHHHh
Confidence 67999999999842 45689999999876
|
| >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-22 Score=191.15 Aligned_cols=184 Identities=21% Similarity=0.243 Sum_probs=116.7
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcC-----CcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCC
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHAS-----VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 370 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG-----~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGf 370 (599)
++|+|+ +|+.. +|.|+.++|+.+| +++.+ +... +. .++||||||||
T Consensus 1 m~I~ii-d~~~g--~~~s~~~~l~~~G~~~~~~~~~~------~~~~------------------~~-~~~dglilpG~- 51 (201)
T 1gpw_B 1 MRIGII-SVGPG--NIMNLYRGVKRASENFEDVSIEL------VESP------------------RN-DLYDLLFIPGV- 51 (201)
T ss_dssp CEEEEE-CCSSS--CCHHHHHHHHHHSTTBSSCEEEE------ECSC------------------CS-SCCSEEEECCC-
T ss_pred CEEEEE-ecCCc--hHHHHHHHHHHcCCCCCceEEEE------ECCC------------------cc-cCCCEEEECCC-
Confidence 589999 58633 6789999999998 55432 3221 12 57899999885
Q ss_pred CCCchh-------HHHHHHHHHHHcCCCEEEEehhHHHHHHHhc--cccccccCCCccccCCCCCCCeeeeCCCCCcCcC
Q 007533 371 GNRGVQ-------GKILAAKYAREHRIPYLGICLGMQVAVIEFA--RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHM 441 (599)
Q Consensus 371 G~rg~e-------g~i~aik~are~~iP~LGICLGmQll~iefg--r~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~ 441 (599)
|+.+.. +...+++.+.+.++|+||||+|||+|+.+++ ++.-++.- + ... +..++....+++
T Consensus 52 g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~~~~l~~-----~----~g~-v~~~~~~~~~~~ 121 (201)
T 1gpw_B 52 GHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSL-----I----EGN-VVKLRSRRLPHM 121 (201)
T ss_dssp SCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEETTEEEEECCCS-----S----SEE-EEECCCSSCSEE
T ss_pred CcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhhccCCCCCCcce-----e----eeE-EEEcCCCCCCcc
Confidence 554321 3567888888999999999999999988875 22111100 0 000 111111112333
Q ss_pred CCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCC-CCeEEEEEeCCCCeEEEE
Q 007533 442 GGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEIVELPNHPYFIGV 520 (599)
Q Consensus 442 GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~d-g~~vE~iE~~~hpffvGv 520 (599)
|| +++.+... + ......+.|+|.+.+. ++.++|++++ |..++++++++ + ++|+
T Consensus 122 g~------~~l~~~~~-~---------~~~~v~~~H~~~v~~~--------~~~vla~s~~~g~~~~a~~~~~-~-i~gv 175 (201)
T 1gpw_B 122 GW------NEVIFKDT-F---------PNGYYYFVHTYRAVCE--------EEHVLGTTEYDGEIFPSAVRKG-R-ILGF 175 (201)
T ss_dssp EE------EEEEESSS-S---------CCEEEEEEESEEEEEC--------GGGEEEEEEETTEEEEEEEEET-T-EEEE
T ss_pred cc------eeeEeccC-C---------CCCeEEEECcceeccC--------CCEEEEEEccCCceEEEEEECC-C-EEEE
Confidence 32 23332211 0 1223456688877532 4568888876 64599999876 5 6799
Q ss_pred cccCCCcCCCCCchHHHHHHHHHHhc
Q 007533 521 QFHPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 521 QFHPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
|||||+++ .....+|.+|++++..
T Consensus 176 QfHPE~~~--~~~~~l~~~f~~~~~~ 199 (201)
T 1gpw_B 176 QFHPEKSS--KIGRKLLEKVIECSLS 199 (201)
T ss_dssp SSCGGGSH--HHHHHHHHHHHHHSSC
T ss_pred ECCCcccC--HhHHHHHHHHHHHhhc
Confidence 99999983 3356899999998754
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.2e-22 Score=217.74 Aligned_cols=180 Identities=18% Similarity=0.180 Sum_probs=124.9
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc--CCCEEEeCCCCCCCc
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRG 374 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIlVPGGfG~rg 374 (599)
|+|+ ||++ .|. ++.++|+.+|+.+.+ .+.+. +. +.+. ++||||+||||++..
T Consensus 2 i~il-D~g~---~~~~~i~r~l~~~G~~~~i----~p~~~-~~----------------~~i~~~~~dgiIlsGGp~s~~ 56 (503)
T 2ywb_A 2 VLVL-DFGS---QYTRLIARRLRELRAFSLI----LPGDA-PL----------------EEVLKHRPQALILSGGPRSVF 56 (503)
T ss_dssp EEEE-ESSC---TTHHHHHHHHHTTTCCEEE----EETTC-CH----------------HHHHTTCCSEEEECCCSSCSS
T ss_pred EEEE-ECCC---cHHHHHHHHHHHCCCEEEE----EECCC-CH----------------HHHHhcCCCEEEECCCCchhc
Confidence 8889 5774 455 899999999988644 22221 11 1222 569999999998753
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 375 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.++.....+.+.+.++|+||||+|||+|+.++|++|.... . .+.|+ +.+.+
T Consensus 57 ~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~~GG~v~~~~---~--------------------~e~G~------~~v~~ 107 (503)
T 2ywb_A 57 DPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERAG---R--------------------AEYGK------ALLTR 107 (503)
T ss_dssp CTTCCCCCGGGGCSSCCEEEETHHHHHHHHTTTCEEECC--------------------------CEEE------EECSE
T ss_pred cCCCcchHHHHHhCCCCEEEECHHHHHHHHHhCCeEeeCC---C--------------------Cccce------EEEEe
Confidence 3221222345567899999999999999999999985421 0 12233 33434
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCch
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~ 534 (599)
.+ +.++..+- .... .++.|+|.|. .+ +.|++++|.++++. +++++++++| ++|+|||||++.+|. +.
T Consensus 108 ~~-~~l~~~~~-~~~~--v~~~H~~~v~-----~l-p~g~~v~A~s~~~~-i~ai~~~~~~-~~gvQFHPE~~~~~~-g~ 174 (503)
T 2ywb_A 108 HE-GPLFRGLE-GEVQ--VWMSHQDAVT-----AP-PPGWRVVAETEENP-VAAIASPDGR-AYGVQFHPEVAHTPK-GM 174 (503)
T ss_dssp EC-SGGGTTCC-SCCE--EEEECSCEEE-----EC-CTTCEEEEECSSCS-CSEEECTTSS-EEEESBCTTSTTSTT-HH
T ss_pred cC-cHHhhcCC-CccE--EEEECCCccc-----cC-CCCCEEEEEECCCC-EEEEEeCCCC-EEEEecCCCcccccc-cH
Confidence 33 24444442 2333 4567887764 34 78999999998876 9999999888 569999999998874 78
Q ss_pred HHHHHHHHHH
Q 007533 535 PLFLGLIAAA 544 (599)
Q Consensus 535 pLF~~Fv~aa 544 (599)
.+|.+|++.|
T Consensus 175 ~ll~~F~~~~ 184 (503)
T 2ywb_A 175 QILENFLELA 184 (503)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999554
|
| >3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=181.49 Aligned_cols=184 Identities=17% Similarity=0.172 Sum_probs=126.5
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
+||+++- .... +....+...|+..|+++.+ ..+...+.- | +.+.++||||||||++++.
T Consensus 1 m~i~vi~-h~~~-e~~g~~~~~l~~~g~~~~~----~~~~~~~~~-------p-------~~~~~~d~lii~GGp~~~~~ 60 (236)
T 3l7n_A 1 MRIHFIL-HETF-EAPGAYLAWAALRGHDVSM----TKVYRYEKL-------P-------KDIDDFDMLILMGGPQSPSS 60 (236)
T ss_dssp CEEEEEE-CCTT-SCCHHHHHHHHHTTCEEEE----EEGGGTCCC-------C-------SCGGGCSEEEECCCSSCTTC
T ss_pred CeEEEEe-CCCC-CCchHHHHHHHHCCCeEEE----EeeeCCCCC-------C-------CCccccCEEEECCCCCCccc
Confidence 5788873 3322 3566788889999877643 233222110 1 2367899999999998742
Q ss_pred -------h--hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcc
Q 007533 375 -------V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM 445 (599)
Q Consensus 375 -------~--eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtm 445 (599)
+ .....+++.+.+.++|+||||+|||+|+.++|++|...+ .+++|
T Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~-----------------------~~~~G--- 114 (236)
T 3l7n_A 61 TKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSP-----------------------KKEIG--- 114 (236)
T ss_dssp CTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEE-----------------------EEEEE---
T ss_pred ccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCC-----------------------Cceee---
Confidence 1 337789999999999999999999999999998875321 02233
Q ss_pred ccCceeeEEecC---CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcc
Q 007533 446 RLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQF 522 (599)
Q Consensus 446 rLG~~~v~l~~~---~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQF 522 (599)
.+++.+.+. +.++..+. ..+...|.|++. ..+ +.+++++|.++++. ++++++.+ + ++|+||
T Consensus 115 ---~~~v~~~~~~~~~~l~~~~~---~~~~v~~~H~~~------~~l-p~~~~vla~s~~~~-~~a~~~~~-~-v~gvQf 178 (236)
T 3l7n_A 115 ---NYLISLTEAGKMDSYLSDFS---DDLLVGHWHGDM------PGL-PDKAQVLAISQGCP-RQIIKFGP-K-QYAFQC 178 (236)
T ss_dssp ---EEEEEECTTGGGCGGGTTSC---SEEEEEEEEEEE------CCC-CTTCEEEEECSSCS-CSEEEEET-T-EEEESS
T ss_pred ---eEEEEEccCcccChHHhcCC---CCcEEEEecCCc------ccC-CChheEEEECCCCC-EEEEEECC-C-EEEEEe
Confidence 456666542 23333332 234456777754 123 67899999998876 89999875 4 679999
Q ss_pred cCCCcCCCCCchHHHHHHHHHHhcc
Q 007533 523 HPEYKSRPGKPSPLFLGLIAAACGQ 547 (599)
Q Consensus 523 HPE~ss~p~~p~pLF~~Fv~aa~~~ 547 (599)
|||++ ..++.+|++.....
T Consensus 179 HPE~~------~~~~~~~~~~~~~~ 197 (236)
T 3l7n_A 179 HLEFT------PELVAALIAQEDDL 197 (236)
T ss_dssp BSSCC------HHHHHHHHHHCSCH
T ss_pred CCCCC------HHHHHHHHHhhhhh
Confidence 99996 46889999887654
|
| >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=178.17 Aligned_cols=181 Identities=16% Similarity=0.208 Sum_probs=114.8
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-c
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-G 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-g 374 (599)
++|+|+. + .+++.++.++|+.+|+.+.+ ++.. +.+.++|||++|||++.. .
T Consensus 3 p~Igi~~-~---~~~~~~~~~~l~~~G~~~~~------~~~~------------------~~l~~~dglil~GG~~~~~~ 54 (191)
T 2ywd_A 3 GVVGVLA-L---QGDFREHKEALKRLGIEAKE------VRKK------------------EHLEGLKALIVPGGESTTIG 54 (191)
T ss_dssp CCEEEEC-S---SSCHHHHHHHHHTTTCCCEE------ECSG------------------GGGTTCSEEEECSSCHHHHH
T ss_pred cEEEEEe-c---CCchHHHHHHHHHCCCEEEE------eCCh------------------hhhccCCEEEECCCChhhhH
Confidence 5799994 3 35789999999999987643 2211 246679999999996431 1
Q ss_pred ----hhHHHHHHHHHHHcC-CCEEEEehhHHHHHHHhcc-ccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 007533 375 ----VQGKILAAKYAREHR-IPYLGICLGMQVAVIEFAR-SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 448 (599)
Q Consensus 375 ----~eg~i~aik~are~~-iP~LGICLGmQll~iefgr-~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG 448 (599)
.......++.+.+++ +|+||||+|||+|+.++++ ++. ++... + +.-..+ ...|.. ..
T Consensus 55 ~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~--~~lg~--~------~~~~~~-----~~~g~~--~~ 117 (191)
T 2ywd_A 55 KLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYPEQ--PRLGV--L------EAWVER-----NAFGRQ--VE 117 (191)
T ss_dssp HHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEEETTCTTC--CCCCC--E------EEEEET-----TCSCCS--SS
T ss_pred HhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHHhCCCCCC--ccccc--c------ceEEEc-----CCcCCc--cc
Confidence 124567888888889 9999999999999988876 431 11000 0 000000 001110 11
Q ss_pred ceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcC
Q 007533 449 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 449 ~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss 528 (599)
.+.. + ..+..+ ..+...+.|+|.+. .+ +.++.++|++ ++ .+|+++..+ ++|+|||||+++
T Consensus 118 ~~~~----~-~~~~~~----~~~~~~~~Hs~~v~-----~l-~~~~~~~a~~-~~-~~~a~~~~~---~~gvQfHPE~~~ 177 (191)
T 2ywd_A 118 SFEE----D-LEVEGL----GSFHGVFIRAPVFR-----RL-GEGVEVLARL-GD-LPVLVRQGK---VLASSFHPELTE 177 (191)
T ss_dssp EEEE----E-EEETTT----EEEEEEEESCCEEE-----EE-CTTCEEEEEE-TT-EEEEEEETT---EEEESSCGGGSS
T ss_pred cccc----c-ccccCC----CceeEEEEccccee-----cc-CCCcEEEEEE-CC-EEEEEEECC---EEEEEeCCCCCC
Confidence 1100 0 111111 22334566777653 22 5688899998 44 599999864 679999999876
Q ss_pred CCCCchHHHHHHHHHHh
Q 007533 529 RPGKPSPLFLGLIAAAC 545 (599)
Q Consensus 529 ~p~~p~pLF~~Fv~aa~ 545 (599)
. + .+|.+|+++|.
T Consensus 178 ~---~-~l~~~f~~~~~ 190 (191)
T 2ywd_A 178 D---P-RLHRYFLELAG 190 (191)
T ss_dssp C---C-HHHHHHHHHHT
T ss_pred C---c-HHHHHHHHHhc
Confidence 3 3 89999998863
|
| >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-20 Score=184.74 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=126.4
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC--
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-- 373 (599)
.+|+++- .... ....++.++|+..|+++.+ ..+...+. .| ..+.++||||||||+++.
T Consensus 4 ~~vliiq-h~~~-e~~~~i~~~l~~~G~~v~v----~~~~~~~~-------~p-------~~~~~~d~lIl~GGp~~~~d 63 (250)
T 3m3p_A 4 KPVMIIQ-FSAS-EGPGHFGDFLAGEHIPFQV----LRMDRSDP-------LP-------AEIRDCSGLAMMGGPMSAND 63 (250)
T ss_dssp CCEEEEE-SSSS-CCCHHHHHHHHHTTCCEEE----EEGGGTCC-------CC-------SCGGGSSEEEECCCSSCTTS
T ss_pred CeEEEEE-CCCC-CCHHHHHHHHHHCCCeEEE----EeccCCCc-------Cc-------CccccCCEEEECCCCCcccc
Confidence 4677773 2222 2456888999999988654 12222111 01 246789999999998753
Q ss_pred ---chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCce
Q 007533 374 ---GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 450 (599)
Q Consensus 374 ---g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~ 450 (599)
.....+..++.+.+.++|+||||+|||+|+.++|++|...+ .+++|| .
T Consensus 64 ~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~-----------------------~~e~G~------~ 114 (250)
T 3m3p_A 64 DLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSP-----------------------HAEIGW------V 114 (250)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEE-----------------------EEEEEE------E
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCC-----------------------CCceee------E
Confidence 23556788999989999999999999999999999885421 123454 4
Q ss_pred eeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCC
Q 007533 451 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRP 530 (599)
Q Consensus 451 ~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p 530 (599)
++.+.+. +....+++-...+...|.|+|.| .+ +.|+.++|.++++. +++++++++ ++|+|||||++.
T Consensus 115 ~v~~~~~-~~~~~l~g~~~~~~v~~~H~~~v------~l-p~~~~vlA~s~~~~-~~a~~~~~~--~~GvQfHPE~~~-- 181 (250)
T 3m3p_A 115 RAWPQHV-PQALEWLGTWDELELFEWHYQTF------SI-PPGAVHILRSEHCA-NQAYVLDDL--HIGFQCHIEMQA-- 181 (250)
T ss_dssp EEEECSS-HHHHHHHSCSSCEEEEEEEEEEE------CC-CTTEEEEEEETTEE-EEEEEETTT--EEEESSCTTCCH--
T ss_pred EEEEecC-CCCcccccCCCccEEEEEcccee------ec-CCCCEEEEEeCCCC-EEEEEECCe--eEEEEeCCcCCH--
Confidence 5665543 22233332123455678898876 23 77999999998875 999999884 679999999863
Q ss_pred CCchHHHHHHHHHHhc
Q 007533 531 GKPSPLFLGLIAAACG 546 (599)
Q Consensus 531 ~~p~pLF~~Fv~aa~~ 546 (599)
.....+++....
T Consensus 182 ----~~~~~~l~~~~~ 193 (250)
T 3m3p_A 182 ----HMVREWCSISPE 193 (250)
T ss_dssp ----HHHHHHHHHCGG
T ss_pred ----HHHHHHHHhhHH
Confidence 455666665443
|
| >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-20 Score=181.35 Aligned_cols=185 Identities=15% Similarity=0.207 Sum_probs=117.5
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
..++|+|+. + .++|.+++++|+.+|+.+.+ ++.. +.+.++||||||||++..
T Consensus 22 ~~~~I~il~-~---~~~~~~~~~~l~~~G~~~~~------~~~~------------------~~l~~~Dglil~GG~~~~ 73 (219)
T 1q7r_A 22 SNMKIGVLG-L---QGAVREHVRAIEACGAEAVI------VKKS------------------EQLEGLDGLVLPGGESTT 73 (219)
T ss_dssp CCCEEEEES-C---GGGCHHHHHHHHHTTCEEEE------ECSG------------------GGGTTCSEEEECCCCHHH
T ss_pred CCCEEEEEe-C---CCCcHHHHHHHHHCCCEEEE------ECCH------------------HHHhhCCEEEECCCChHH
Confidence 468999994 4 34788888999999876532 3321 236789999999998643
Q ss_pred c-----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 007533 374 G-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 448 (599)
Q Consensus 374 g-----~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG 448 (599)
. ..+...+++.+.++++|+||||+|||+|+.++++++. ++... + +.-..+ ...|. +.+
T Consensus 74 ~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~~--~~lg~--~------~~~~~~-----~~~g~--~~~ 136 (219)
T 1q7r_A 74 MRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDE--PHLGL--M------DITVER-----NSFGR--QRE 136 (219)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEEESSCC--CCCCC--E------EEEEEC-----HHHHC--CCC
T ss_pred HHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCCc--CCcCc--c------ceEEEe-----cCCCc--ccc
Confidence 1 1334678899999999999999999999988887652 11000 0 000000 00111 011
Q ss_pred ceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcC
Q 007533 449 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 449 ~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss 528 (599)
.+.. + ..+.. ++ ..+...+.|++.+. .+ +.++.++|.+ ++. +|+++.. +++|+|||||+++
T Consensus 137 ~~~~----~-~~~~g-~g--~~~~~~~~h~~~v~-----~l-~~~~~v~a~s-dg~-~ea~~~~---~i~GvQfHPE~~~ 197 (219)
T 1q7r_A 137 SFEA----E-LSIKG-VG--DGFVGVFIRAPHIV-----EA-GDGVDVLATY-NDR-IVAARQG---QFLGCSFHPELTD 197 (219)
T ss_dssp CEEE----E-EEETT-TE--EEEEEEESSCCEEE-----EE-CTTCEEEEEE-TTE-EEEEEET---TEEEESSCGGGSS
T ss_pred ceec----C-cccCC-CC--CceEEEEEecceee-----cc-CCCcEEEEEc-CCE-EEEEEEC---CEEEEEECcccCC
Confidence 1110 0 11111 12 23334455665543 33 6789999998 664 8999983 4789999999985
Q ss_pred CCCCchHHHHHHHHHHhc
Q 007533 529 RPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 529 ~p~~p~pLF~~Fv~aa~~ 546 (599)
. ..+|++|++++.+
T Consensus 198 ~----~~l~~~fl~~~~~ 211 (219)
T 1q7r_A 198 D----HRLMQYFLNMVKE 211 (219)
T ss_dssp C----CHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHH
Confidence 4 3899999998865
|
| >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-20 Score=177.45 Aligned_cols=184 Identities=15% Similarity=0.186 Sum_probs=115.2
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
+||+|++ | .++|.+++++|+.+|+++. +++.. +.+.++|||++|||++...
T Consensus 2 m~I~il~-~---~~~~~~~~~~l~~~g~~~~------~~~~~------------------~~l~~~d~iil~GG~~~~~~ 53 (196)
T 2nv0_A 2 LTIGVLG-L---QGAVREHIHAIEACGAAGL------VVKRP------------------EQLNEVDGLILPGGESTTMR 53 (196)
T ss_dssp CEEEEEC-S---SSCCHHHHHHHHHTTCEEE------EECSG------------------GGGGGCSEEEECCSCHHHHH
T ss_pred cEEEEEE-c---cCCcHHHHHHHHHCCCEEE------EeCCh------------------HHHhhCCEEEECCCChhhHH
Confidence 5899994 4 4588888999999997543 23321 2366899999999975432
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCce
Q 007533 375 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 450 (599)
Q Consensus 375 ----~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~ 450 (599)
..+....++.+.++++|+||||+|||+|+.++++++.. + ... .|.-..+ ...|. +
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~~gg~~~~--~-----lg~---~~~~~~~-----~~~g~------~ 112 (196)
T 2nv0_A 54 RLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNP--H-----LGL---LNVVVER-----NSFGR------Q 112 (196)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBCCC----C--C-----CCC---SCEEEEC-----CCSCT------T
T ss_pred HHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHHhcCCCCC--c-----ccC---CceeEec-----cCCCc------c
Confidence 12346788888899999999999999999888875421 1 100 0000000 00111 1
Q ss_pred eeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCC
Q 007533 451 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRP 530 (599)
Q Consensus 451 ~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p 530 (599)
...+..+ +.+..+ +. .+...+.|++.+. .+ +.++.++|.+ ++. +|+++.. +++|+|||||+++.
T Consensus 113 ~~~~~~~-~~~~~~-g~--~~~~~~~h~~~v~-----~~-~~~~~v~a~~-d~~-~~a~~~~---~~~gvQfHPE~~~~- 176 (196)
T 2nv0_A 113 VDSFEAD-LTIKGL-DE--PFTGVFIRAPHIL-----EA-GENVEVLSEH-NGR-IVAAKQG---QFLGCSFHPELTED- 176 (196)
T ss_dssp TSEEEEE-ECCTTC-SS--CEEEEEESCCEEE-----EE-CTTCEEEEEE-TTE-EEEEEET---TEEEESSCTTSSSC-
T ss_pred cccccCC-cccccC-CC--ceEEEEEecceec-----cc-CCCcEEEEEE-CCE-EEEEEEC---CEEEEEECCccCCc-
Confidence 0011111 233332 32 2333445666553 23 5688999988 554 8999874 47899999999765
Q ss_pred CCchHHHHHHHHHHhcc
Q 007533 531 GKPSPLFLGLIAAACGQ 547 (599)
Q Consensus 531 ~~p~pLF~~Fv~aa~~~ 547 (599)
..+|.+|++++.+.
T Consensus 177 ---~~l~~~fl~~~~~~ 190 (196)
T 2nv0_A 177 ---HRVTQLFVEMVEEY 190 (196)
T ss_dssp ---CHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHhh
Confidence 28999999988653
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-20 Score=210.42 Aligned_cols=183 Identities=16% Similarity=0.121 Sum_probs=118.6
Q ss_pred eEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 296 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
.+|+|++ |++ .|. .+.++|+.+|+.+.+ .+.+.. .+ ++ ...++||||+||||++..
T Consensus 30 ~~I~VLD-fg~---q~~~liar~lre~Gv~~~i----vp~~~~-~e------------~i--~~~~~dGIILsGGp~s~~ 86 (697)
T 2vxo_A 30 GAVVILD-AGA---QYGKVIDRRVRELFVQSEI----FPLETP-AF------------AI--KEQGFRAIIISGGPNSVY 86 (697)
T ss_dssp CCEEEEE-EC-----CHHHHHHHHHHTTCCEEE----EETTCC-HH------------HH--HHHTCSEEEEEECC----
T ss_pred CEEEEEE-CCC---chHHHHHHHHHHCCCEEEE----EECCCC-HH------------HH--hhcCCCEEEECCCCCccc
Confidence 4799994 653 444 477999999987644 222211 10 01 125899999999998753
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 375 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.++.....+.+.+.++|+||||+|||+|+.++|++|...+. .+.| .+++.+
T Consensus 87 ~~~~~~~~~~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~~~-----------------------~e~G------~~~v~~ 137 (697)
T 2vxo_A 87 AEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSV-----------------------REDG------VFNISV 137 (697)
T ss_dssp ---CCCCCGGGTTSSCCEEEEEHHHHHHHHHTTCCBCC------------------------------------CEEEEE
T ss_pred CccchhHHHHHHhCCCCEEEECHHHHHHHHHhCCeEeecCC-----------------------Cccc------eEEEEe
Confidence 22111112334567899999999999999999999854210 2233 456666
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCch
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~ 534 (599)
.+++.++..+ +... ..++.|+|.|. .+ +.|++++|.++ + .+++++++++|+ +|+|||||++..+. +.
T Consensus 138 ~~~~~Lf~~l-~~~~--~v~~~H~~~V~-----~l-p~g~~vlA~s~-~-~i~ai~~~~~~i-~GvQFHPE~~~t~~-g~ 204 (697)
T 2vxo_A 138 DNTCSLFRGL-QKEE--VVLLTHGDSVD-----KV-ADGFKVVARSG-N-IVAGIANESKKL-YGAQFHPEVGLTEN-GK 204 (697)
T ss_dssp CTTSGGGTTC-CSEE--EECCCSSCCBS-----SC-CTTCEEEEEET-T-EEEEEEETTTTE-EEESSCTTSSSSTT-HH
T ss_pred cCCChhhhcC-CccC--cceeeccccee-----cC-CCCeEEEEEeC-C-ceEEEEeCCCCE-EEEEecccCCCCcc-ch
Confidence 6553334333 3233 34566887764 34 78999999984 4 699999999985 69999999998875 78
Q ss_pred HHHHHHHHH
Q 007533 535 PLFLGLIAA 543 (599)
Q Consensus 535 pLF~~Fv~a 543 (599)
.+|.+|+..
T Consensus 205 ~ll~nFl~~ 213 (697)
T 2vxo_A 205 VILKNFLYD 213 (697)
T ss_dssp HHHHHHHTT
T ss_pred hhhhhhhhc
Confidence 999999943
|
| >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=176.32 Aligned_cols=184 Identities=24% Similarity=0.290 Sum_probs=114.6
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
++|+|+ +|+. .++.|+.++|+.+|+++.+ ++.. +.+.++|||++||| |++..
T Consensus 3 ~~I~ii-d~~~--~~~~~~~~~l~~~G~~~~~------~~~~------------------~~l~~~d~lil~G~-g~~~~ 54 (200)
T 1ka9_H 3 MKALLI-DYGS--GNLRSAAKALEAAGFSVAV------AQDP------------------KAHEEADLLVLPGQ-GHFGQ 54 (200)
T ss_dssp CEEEEE-CSSC--SCHHHHHHHHHHTTCEEEE------ESST------------------TSCSSCSEEEECCC-SCHHH
T ss_pred cEEEEE-eCCC--ccHHHHHHHHHHCCCeEEE------ecCh------------------HHcccCCEEEECCC-CcHHH
Confidence 589999 6752 3688999999999987643 2211 23568999999873 44211
Q ss_pred -------hHHHHHHHHHHHcCCCEEEEehhHHHHHHH---hccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcc
Q 007533 376 -------QGKILAAKYAREHRIPYLGICLGMQVAVIE---FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM 445 (599)
Q Consensus 376 -------eg~i~aik~are~~iP~LGICLGmQll~ie---fgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtm 445 (599)
.....+++.+.++++|+||||+|||+|+.+ +|+ . ++.. .+ +.. +..++....+++||
T Consensus 55 ~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg-~---~~l~--~~----~g~-v~~~~~~~~~~~G~-- 121 (200)
T 1ka9_H 55 VMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPG-V---RGLG--LV----PGE-VRRFRAGRVPQMGW-- 121 (200)
T ss_dssp HHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSEETTSTT-C---CCCC--SS----SSE-EEECCSSSSSEEEE--
T ss_pred HHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHhccccCC-c---CCcc--cc----ccE-EEECCCCCCCceeE--
Confidence 236788999989999999999999999877 443 1 1110 01 011 11111111234443
Q ss_pred ccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCC-CCeEEEEEeCCCCeEEEEcccC
Q 007533 446 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEIVELPNHPYFIGVQFHP 524 (599)
Q Consensus 446 rLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~d-g~~vE~iE~~~hpffvGvQFHP 524 (599)
+++.+.+ + +..+.+ ....+.|+|.+ +. .++ .+ |++++ |..++++...+ +++|+||||
T Consensus 122 ----~~v~~~~--~-l~~~~~----~~~~~~Hs~~~-~~------~~~-~v-a~s~~~g~~~~~~~~~~--~i~gvQfHP 179 (200)
T 1ka9_H 122 ----NALEFGG--A-FAPLTG----RHFYFANSYYG-PL------TPY-SL-GKGEYEGTPFTALLAKE--NLLAPQFHP 179 (200)
T ss_dssp ----EECEECG--G-GGGGTT----CEEEEEESEEC-CC------CTT-CC-EEEEETTEEEEEEEECS--SEEEESSCT
T ss_pred ----EEEEech--h-hhcCCC----CCEEEeccccc-CC------CCC-cE-EEEEeCCeEEEEEEeeC--CEEEEecCC
Confidence 4555554 3 555542 23467799988 42 222 35 77766 63366666655 478999999
Q ss_pred CCcCCCCCchHHH---HHHHHHH
Q 007533 525 EYKSRPGKPSPLF---LGLIAAA 544 (599)
Q Consensus 525 E~ss~p~~p~pLF---~~Fv~aa 544 (599)
|++. .....+| ++|++.+
T Consensus 180 E~~~--~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 180 EKSG--KAGLAFLALARRYFEVL 200 (200)
T ss_dssp TSSH--HHHHHHHHHHHHHC---
T ss_pred CcCc--cchhHHHHHHHHHHhhC
Confidence 9986 3356899 9998753
|
| >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=177.38 Aligned_cols=186 Identities=12% Similarity=0.127 Sum_probs=111.7
Q ss_pred CCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 007533 292 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 292 ~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
..++++|+|+ +| ..+|.++.++|+.+|+++. +++.. +.+.++|||++|||+.
T Consensus 17 ~~~~~~I~ii-~~---~~~~~~~~~~l~~~g~~~~------~~~~~------------------~~l~~~d~iil~GG~~ 68 (208)
T 2iss_D 17 RGSHMKIGVL-GV---QGDVREHVEALHKLGVETL------IVKLP------------------EQLDMVDGLILPGGES 68 (208)
T ss_dssp ---CCEEEEE-CS---SSCHHHHHHHHHHTTCEEE------EECSG------------------GGGGGCSEEEECSSCH
T ss_pred CCCCcEEEEE-EC---CCchHHHHHHHHHCCCEEE------EeCCh------------------HHHhhCCEEEECCCcH
Confidence 3456899999 57 2389999999999987543 23321 2356899999999853
Q ss_pred CCc-----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccc
Q 007533 372 NRG-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 446 (599)
Q Consensus 372 ~rg-----~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtmr 446 (599)
... ..+..++++.+.++++|+||||+|||+|+.++++... +...- + |....+ ...|..
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~--~~lg~--~------~~~v~~-----~~~g~~-- 131 (208)
T 2iss_D 69 TTMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKRIKNYSQ--EKLGV--L------DITVER-----NAYGRQ-- 131 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEEEC---C--CCCCC--E------EEEEET-----TTTCSG--
T ss_pred HHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHHcCCCCC--CCccc--c------ceEEEe-----cCCCcc--
Confidence 211 1224678888888999999999999999888876421 11000 0 000000 001111
Q ss_pred cCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCC
Q 007533 447 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEY 526 (599)
Q Consensus 447 LG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ 526 (599)
...+..+ +.+..+ + ..++...+.|++.+. .+ +.++.++|.+ ++ .+|+++.. + ++|+|||||+
T Consensus 132 ----~~~~~~~-~~~~~~-~-~~~~~~~~~h~~~v~-----~~-~~~~~v~a~~-d~-~~~a~~~~--~-i~GvQfHPE~ 193 (208)
T 2iss_D 132 ----VESFETF-VEIPAV-G-KDPFRAIFIRAPRIV-----ET-GKNVEILATY-DY-DPVLVKEG--N-ILACTFHPEL 193 (208)
T ss_dssp ----GGCEEEE-ECCGGG-C-SSCEEEEESSCCEEE-----EE-CSSCEEEEEE-TT-EEEEEEET--T-EEEESSCGGG
T ss_pred ----cccccCC-cccccC-C-CCceEEEEEeCcccc-----cC-CCCcEEEEEE-CC-EEEEEEEC--C-EEEEEeCCCc
Confidence 0001122 233332 2 122333344554443 22 5688899987 55 48999874 4 6799999999
Q ss_pred cCCCCCchHHHHHHHHHH
Q 007533 527 KSRPGKPSPLFLGLIAAA 544 (599)
Q Consensus 527 ss~p~~p~pLF~~Fv~aa 544 (599)
+..+ .+|++|+++|
T Consensus 194 ~~~~----~l~~~fl~~~ 207 (208)
T 2iss_D 194 TDDL----RLHRYFLEMV 207 (208)
T ss_dssp SSCC----HHHHHHHTTC
T ss_pred CCcH----HHHHHHHHHh
Confidence 8753 8999998764
|
| >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-18 Score=167.56 Aligned_cols=198 Identities=13% Similarity=0.152 Sum_probs=112.6
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHc---CCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHA---SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~ha---G~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
+++|+|+. |. .++.+.+++|+.+ |+.+. +++.. +.+.++||||||||+.
T Consensus 3 ~~~I~Il~-~~---~~~~~~~~~l~~~~~~G~~~~------~~~~~------------------~~l~~~dglil~GG~~ 54 (227)
T 2abw_A 3 EITIGVLS-LQ---GDFEPHINHFIKLQIPSLNII------QVRNV------------------HDLGLCDGLVIPGGES 54 (227)
T ss_dssp CEEEEEEC-TT---SCCHHHHHHHHTTCCTTEEEE------EECSH------------------HHHHTCSEEEECCSCH
T ss_pred CcEEEEEe-CC---CCcHHHHHHHHHhccCCeEEE------EEcCc------------------cccccCCEEEECCCcH
Confidence 47899994 54 3677889999998 76532 23211 3467899999999974
Q ss_pred CC-----ch--hHHHHHHHHHHHc-CCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCC
Q 007533 372 NR-----GV--QGKILAAKYAREH-RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 443 (599)
Q Consensus 372 ~r-----g~--eg~i~aik~are~-~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Gg 443 (599)
+. .. .++..+++.+.+. ++|+||||+|||+|+.++++.+..-......++.- .++...+ ...|.
T Consensus 55 ~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~---~~~~~~~-----~~~g~ 126 (227)
T 2abw_A 55 TTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGG---LDITICR-----NFYGS 126 (227)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCC---EEEEEEC-----CC---
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCc---eeEEEEe-----cCCCc
Confidence 31 11 3567888888899 99999999999999888776541100000011100 0000000 00010
Q ss_pred c-cccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC-----CCCeEEEEEeCCCCeE
Q 007533 444 T-MRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-----TSQRMEIVELPNHPYF 517 (599)
Q Consensus 444 t-mrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~-----dg~~vE~iE~~~hpff 517 (599)
. .++ ...+.+ ++ +..+.+.. +..+..|+|.+. .+.+.++.++|.++ ++. +++++.. ++
T Consensus 127 ~~~~~-~~~~~~-~~---~~~~~g~~--~~~~~~h~~~v~-----~~~~~~~~vla~~~~~~~g~~~-~~a~~~~---~v 190 (227)
T 2abw_A 127 QNDSF-ICSLNI-IS---DSSAFKKD--LTAACIRAPYIR-----EILSDEVKVLATFSHESYGPNI-IAAVEQN---NC 190 (227)
T ss_dssp -CCEE-EEECEE-CC---CCTTCCTT--CEEEEESCCEEE-----EECCTTCEEEEEEEETTTEEEE-EEEEEET---TE
T ss_pred ccccc-cccccc-cc---ccccCCCc--eeEEEEEcceEe-----ecCCCCcEEEEEcccccCCCCc-eEEEEEC---CE
Confidence 0 000 001111 10 00001111 112233454432 11146788989886 343 8888863 37
Q ss_pred EEEcccCCCcCCCCCchHHHHHHHHHHhcch
Q 007533 518 IGVQFHPEYKSRPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 518 vGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 548 (599)
+|+|||||++..+ .+|++|+++|....
T Consensus 191 ~gvQfHPE~~~~~----~l~~~Fl~~~~~~~ 217 (227)
T 2abw_A 191 LGTVFHPELLPHT----AFQQYFYEKVKNYK 217 (227)
T ss_dssp EEESSCGGGSSCC----HHHHHHHHHHHHHH
T ss_pred EEEEECCeeCCCc----HHHHHHHHHHHhhh
Confidence 8999999998653 89999999986543
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-17 Score=185.47 Aligned_cols=197 Identities=14% Similarity=0.127 Sum_probs=117.2
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
++|+|+ +|.. ..+.++.++|+.+|+.+.+ ++..+. ..+.++|||||||| |+...
T Consensus 5 ~~I~Ii-d~~~--g~~~~~~~~l~~~G~~~~v------v~~~~~----------------~~l~~~DglILpGg-G~~~~ 58 (555)
T 1jvn_A 5 PVVHVI-DVES--GNLQSLTNAIEHLGYEVQL------VKSPKD----------------FNISGTSRLILPGV-GNYGH 58 (555)
T ss_dssp CEEEEE-CCSC--SCCHHHHHHHHHTTCEEEE------ESSGGG----------------CCSTTCSCEEEEEC-SCHHH
T ss_pred CEEEEE-ECCC--CCHHHHHHHHHHCCCEEEE------ECCccc----------------cccccCCEEEECCC-CchHh
Confidence 589999 5862 2567999999999976533 332110 13678999999884 33221
Q ss_pred -------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--ccccccccCCCccccCCCCCCCeeeeCCC--CCcCcCCCc
Q 007533 376 -------QGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNLRDANSTEFDPNTKNPCVIFMPE--GSKTHMGGT 444 (599)
Q Consensus 376 -------eg~i~aik~are~~iP~LGICLGmQll~ief--gr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe--~~~~~~Ggt 444 (599)
.+...+++.+.+.++|+||||+|||+|+.++ ++..-+|.. + ... +...+. ...+|+||+
T Consensus 59 ~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a~~egg~~~~Lg~-----l----gg~-v~~~~~~~~~~~~~G~~ 128 (555)
T 1jvn_A 59 FVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAGSVESPKSTGLNY-----I----DFK-LSRFDDSEKPVPEIGWN 128 (555)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEEETTBTTCCCCCS-----E----EEE-EEECCTTTSCSSEEEEE
T ss_pred HhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhhhhcCCCccccCC-----C----CcE-EEECCcCCCCCccccce
Confidence 2356788888899999999999999998776 111111100 0 000 111111 123455653
Q ss_pred cccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhh-hhhccCCeEEEEEeCCC--CeEEEEEeCCCCeEEEEc
Q 007533 445 MRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMI-ARLENAGLSFTGKDETS--QRMEIVELPNHPYFIGVQ 521 (599)
Q Consensus 445 mrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v-~~le~~Gl~~sa~s~dg--~~vE~iE~~~hpffvGvQ 521 (599)
++.+. . .++..+. .... ..+.|+|.+..... ..+.+.++.++|+++.+ ..+++++. .+ ++|+|
T Consensus 129 ------~v~~~-~-~L~~~l~-~~~~--~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~--~~-i~GvQ 194 (555)
T 1jvn_A 129 ------SCIPS-E-NLFFGLD-PYKR--YYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNK--NN-IFATQ 194 (555)
T ss_dssp ------CCCCC-T-TCCTTCC-TTSC--EEEEESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEE--TT-EEEES
T ss_pred ------EEEEc-C-HHHhhCC-CCce--EEEEEEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEe--CC-EEEEE
Confidence 33222 2 4444443 1212 34568888754210 00113467788877643 24899994 34 67999
Q ss_pred ccCCCcCCCCCchHHHHHHHHHH
Q 007533 522 FHPEYKSRPGKPSPLFLGLIAAA 544 (599)
Q Consensus 522 FHPE~ss~p~~p~pLF~~Fv~aa 544 (599)
||||+++. ....+|.+|+++.
T Consensus 195 FHPE~s~~--~g~~l~~~Fl~~~ 215 (555)
T 1jvn_A 195 FHPEKSGK--AGLNVIENFLKQQ 215 (555)
T ss_dssp SBGGGSHH--HHHHHHHHHHTTC
T ss_pred eCcEecCh--hHHHHHHHHHhcc
Confidence 99998642 2467999999875
|
| >2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.8e-13 Score=137.11 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=112.1
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCC-CccccCCch-hhhHHHH-hccCCCEEEeCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLE-DATEKENPD-AYKAAWK-LLKGADGILVPGG 369 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le-~~~~~~~p~-~y~~a~~-~L~~~DGIlVPGG 369 (599)
..+||||+ .--.....|- .+.+.|......+ ++.++...+-+ +.+..+... .|....+ ...++||+||+||
T Consensus 34 rplkI~IL-nlmp~k~~te~qf~rlL~~~~~qv----~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGa 108 (301)
T 2vdj_A 34 RALKIAIL-NLMPTKQETEAQLLRLIGNTPLQL----DVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGA 108 (301)
T ss_dssp CCEEEEEE-CCCSSHHHHHHHHHHHHTCSSSCE----EEEEECCCC------------CCEECHHHHTTSCEEEEEECCC
T ss_pred CCceEEEE-eCCCCcCchHHHHHHHhcCCCCcE----EEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCC
Confidence 46899999 4433333343 3455554444433 33344332211 111111111 1222222 2478999999999
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc-ccccccCCCccccCCCCCCCeeeeCCCCCcCcC
Q 007533 370 FGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR-SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHM 441 (599)
Q Consensus 370 fG~-------rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr-~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~ 441 (599)
+-. +-+......+++++++++|+||||+|+|++..++++ ....+. .+
T Consensus 109 p~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~-------------------------~K 163 (301)
T 2vdj_A 109 PVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLK-------------------------EK 163 (301)
T ss_dssp TTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE-------------------------EE
T ss_pred CCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCC-------------------------CC
Confidence 843 234668889999999999999999999996666554 221111 00
Q ss_pred CCccccCceeeEEec-CCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEE
Q 007533 442 GGTMRLGSRRTYFQI-KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGV 520 (599)
Q Consensus 442 GgtmrLG~~~v~l~~-~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGv 520 (599)
..|..+..+.. .+.+++.+ + .....-|.|.-++..+.+..+ +|++++|.|+... +++++.++.. ++++
T Consensus 164 ----~~Gv~~~~~~~~~~pL~~g~-~--~~f~~phsr~~~~~~~~v~~~--pga~vLA~S~~~~-~~~~~~~~~~-~~~v 232 (301)
T 2vdj_A 164 ----MFGVFEHEVREQHVKLLQGF-D--ELFFAVHSRHTEVRESDIREV--KELTLLANSEEAG-VHLVIGQEGR-QVFA 232 (301)
T ss_dssp ----EEEEEEEEECCSSCGGGTTC-C--SEEEEEEEEEEECCHHHHHTC--TTEEEEEEETTTE-EEEEEEGGGT-EEEE
T ss_pred ----EEEEEEEEecCCCCccccCC-C--CceEeeeEeccCcCHHHccCC--CCCEEEEeCCCCc-ceEEEecCCC-EEEE
Confidence 12333443332 22444433 2 233344544345555666654 4999999987765 9999997765 5699
Q ss_pred cccCCCcCC
Q 007533 521 QFHPEYKSR 529 (599)
Q Consensus 521 QFHPE~ss~ 529 (599)
||||||...
T Consensus 233 QgHpEyd~~ 241 (301)
T 2vdj_A 233 LGHSEYSCD 241 (301)
T ss_dssp CSCTTCCTT
T ss_pred ECCCCCCHH
Confidence 999999765
|
| >2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.5e-13 Score=137.75 Aligned_cols=207 Identities=14% Similarity=0.119 Sum_probs=118.2
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCcc-ccCCchhhhHHHHh--ccCCCEEEeCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDAT-EKENPDAYKAAWKL--LKGADGILVPGG 369 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~-~~~~p~~y~~a~~~--L~~~DGIlVPGG 369 (599)
..+||||+ .--.....|- .+.+.|......+ ++.++...+-+..+ ..+...+|...+.. ..++||+||+||
T Consensus 46 rplkI~IL-nlmp~k~~te~qf~rlL~~~~~qv----~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGs 120 (312)
T 2h2w_A 46 RPLEILIL-NLMPDKIKTEIQLLRLLGNTPLQV----NVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGA 120 (312)
T ss_dssp CCEEEEEE-CCCSSHHHHHHHHHHHHHSSSSCE----EEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCC
T ss_pred CCceEEEE-eCCCCcCchHHHHHHHhcCCCCcE----EEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCC
Confidence 46899999 4433333344 4555565554443 33344332211100 00001111111122 478999999999
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc-ccccCCCccccCCCCCCCeeeeCCCCCcCcC
Q 007533 370 FGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV-LNLRDANSTEFDPNTKNPCVIFMPEGSKTHM 441 (599)
Q Consensus 370 fG~-------rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~V-lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~ 441 (599)
+-. +.+..+...+++++++++|+||||+|+|+++.++++-. ..+. .+
T Consensus 121 P~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~-------------------------~K 175 (312)
T 2h2w_A 121 PVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELP-------------------------QK 175 (312)
T ss_dssp SCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE-------------------------EE
T ss_pred CCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCC-------------------------CC
Confidence 843 23466888999999999999999999999766666522 1110 01
Q ss_pred CCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEc
Q 007533 442 GGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 521 (599)
Q Consensus 442 GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQ 521 (599)
..|..+..+.+.+.+++.+ + .....-|.|.-++..+.+... +|++++|.|+... +++++.++.. ++++|
T Consensus 176 ----~~Gv~~~~~~~~~pL~~g~-~--~~f~vphsr~~e~~~~~v~~~--pga~vLA~S~~~~-~q~~~~~~~~-~~~vQ 244 (312)
T 2h2w_A 176 ----LSGVYKHRVAKDSVLFRGH-D--DFFWAPHSRYTEVKKEDIDKV--PELEILAESDEAG-VYVVANKSER-QIFVT 244 (312)
T ss_dssp ----EEEEEEEEESSCCGGGTTC-C--SEEEEEEEEEEECCHHHHTTC--C-CEEEEEETTTE-EEEEECSSSS-EEEEC
T ss_pred ----EEEEEEEEEcCCCccccCC-C--CceEeeEEeccccCHHHccCC--CCCEEEEcCCCCc-ceEEEecCCC-EEEEE
Confidence 1234455554433444443 2 223334533334444545443 5999999987765 9999997766 57999
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHhc
Q 007533 522 FHPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 522 FHPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
|||||... -+-..+.....+
T Consensus 245 gHPEyd~~-----~l~~ey~rd~~~ 264 (312)
T 2h2w_A 245 GHPEYDRY-----TLRDEYYRDIGR 264 (312)
T ss_dssp SCTTCCTT-----HHHHHHHHHHHT
T ss_pred CCCCCCHH-----HHHHHHHHHHHc
Confidence 99999765 333445544443
|
| >3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.3e-09 Score=126.03 Aligned_cols=194 Identities=20% Similarity=0.235 Sum_probs=113.8
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC--C
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--N 372 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG--~ 372 (599)
++||||+ +|... ..-.++.+||+++|+.+.. .|+. ++.. ++ +.++++|+|++||||. +
T Consensus 1047 ~pkVaIi-~~~G~-N~~~~~~~A~~~aG~~~~~----v~~~--dl~~-----~~-------~~l~~~d~lvlPGGfSygD 1106 (1303)
T 3ugj_A 1047 RPKVAVL-REQGV-NSHVEMAAAFHRAGFDAID----VHMS--DLLG-----GR-------IGLGNFHALVACGGFSYGD 1106 (1303)
T ss_dssp CCEEEEE-ECTTC-CCHHHHHHHHHHTTCEEEE----EEHH--HHHT-----TS-------CCGGGCSEEEECCSCGGGG
T ss_pred CCEEEEE-ecCCc-CCHHHHHHHHHHhCCceEE----Eeec--cccc-----Cc-------ccHhhCCEEEECCCCcchh
Confidence 5799999 57433 2567999999999987643 3442 1100 00 2478999999999964 3
Q ss_pred C---ch---------hHHHHHHHHH-HHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcC
Q 007533 373 R---GV---------QGKILAAKYA-REHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKT 439 (599)
Q Consensus 373 r---g~---------eg~i~aik~a-re~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~ 439 (599)
. +. .++..+++.+ .+.++|+||||+|||+|+ +.. .+ ++.+. ..| .++..
T Consensus 1107 ~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~-e~~-gl--lPg~~--------~~p--~l~~N---- 1168 (1303)
T 3ugj_A 1107 VLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMS-NLR-EL--IPGSE--------LWP--RFVRN---- 1168 (1303)
T ss_dssp TTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHH-TTG-GG--STTCT--------TCC--EEECC----
T ss_pred hhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHH-Hhc-Cc--CCCCC--------CCC--eEecC----
Confidence 1 10 2344556654 357899999999999995 321 12 22221 111 11111
Q ss_pred cCCCccccCce--eeEEecCCch-hhhccCCceeEEeeeee-eeeeC-chhhhhhccCCeEEEEE-------------eC
Q 007533 440 HMGGTMRLGSR--RTYFQIKDCK-SAKLYGNRTFIDERHRH-RYEVN-PDMIARLENAGLSFTGK-------------DE 501 (599)
Q Consensus 440 ~~GgtmrLG~~--~v~l~~~~s~-l~~iyg~~~~I~erHrH-rYeVn-p~~v~~le~~Gl~~sa~-------------s~ 501 (599)
..+ |+=.+ .+.+.++.|. ++.+-|..-.|...|.. ||.+. ++.+++|+..|....-+ ++
T Consensus 1169 -~s~--~f~~r~~~~~v~~~~s~~~~~~~g~~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~yp~NP 1245 (1303)
T 3ugj_A 1169 -HSD--RFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANP 1245 (1303)
T ss_dssp -TTS--SCEEEEEEEEECCCSCGGGTTCTTCEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSS
T ss_pred -CCC--CeEEeCeEEEECCCCChhhhccCCCEEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCCCCCC
Confidence 111 11111 2233333343 44433323346667753 45554 46677887888766654 35
Q ss_pred CCCe--EEEEEeCCCCeEEEEcccCCCcCCC
Q 007533 502 TSQR--MEIVELPNHPYFIGVQFHPEYKSRP 530 (599)
Q Consensus 502 dg~~--vE~iE~~~hpffvGvQFHPE~ss~p 530 (599)
+|.. |++|-.++.. ++|...|||...++
T Consensus 1246 NGS~~~IaGi~s~~Gr-vlg~MpHPEr~~~~ 1275 (1303)
T 3ugj_A 1246 NGSPNGITAVTTENGR-VTIMMPHPERVFRT 1275 (1303)
T ss_dssp SCCGGGEEEEECTTSS-EEEESSBGGGSSBG
T ss_pred CCChhhceEeECCCCC-EEEEcCChHHcccc
Confidence 6653 8999999888 56999999986654
|
| >3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-07 Score=91.22 Aligned_cols=92 Identities=15% Similarity=0.037 Sum_probs=63.9
Q ss_pred ceEEEEEeecCCC---cchH-HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCC
Q 007533 295 PVRIAMVGKYTGL---SDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 370 (599)
Q Consensus 295 ~v~IaiVGkY~~l---~DaY-~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGf 370 (599)
..+|++| .|... .|.| .|+.++|++.|+++.+ ++-.+- ++ .+..+.+.++|+|++|||-
T Consensus 27 ~~~i~~I-p~As~~~~~~~~~~s~~~a~~~lG~~v~~------~~i~~~-------~~---~~~~~~l~~ad~I~l~GG~ 89 (206)
T 3l4e_A 27 GKTVTFI-PTASTVEEVTFYVEAGKKALESLGLLVEE------LDIATE-------SL---GEITTKLRKNDFIYVTGGN 89 (206)
T ss_dssp TCEEEEE-CGGGGGCSCCHHHHHHHHHHHHTTCEEEE------CCTTTS-------CH---HHHHHHHHHSSEEEECCSC
T ss_pred CCEEEEE-CCCCCCCCHHHHHHHHHHHHHHcCCeEEE------EEecCC-------Ch---HHHHHHHHhCCEEEECCCC
Confidence 4799999 57643 2344 5899999999986532 321110 11 1122468899999999952
Q ss_pred CCCc-----hhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 371 GNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 371 G~rg-----~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
-.+- ..++..+++.+.++++|++|||+|||++.
T Consensus 90 ~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~ 127 (206)
T 3l4e_A 90 TFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITS 127 (206)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTS
T ss_pred HHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhc
Confidence 2221 24678889999999999999999999984
|
| >1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-07 Score=92.98 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=61.7
Q ss_pred ceEEEEEeecCC---CcchH-HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCC
Q 007533 295 PVRIAMVGKYTG---LSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 370 (599)
Q Consensus 295 ~v~IaiVGkY~~---l~DaY-~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGf 370 (599)
..+|+++ +|.. -.|.| .|+.++|++.|+++.. +.. .+ + ..+.+.++|+|++|||-
T Consensus 31 ~~~i~iI-~~a~~~~~~~~~~~~~~~al~~lG~~~~~------v~~--~~------d------~~~~l~~ad~I~lpGG~ 89 (229)
T 1fy2_A 31 RRSAVFI-PFAGVTQTWDEYTDKTAEVLAPLGVNVTG------IHR--VA------D------PLAAIEKAEIIIVGGGN 89 (229)
T ss_dssp CCEEEEE-CTTCCSSCHHHHHHHHHHHHGGGTCEEEE------TTS--SS------C------HHHHHHHCSEEEECCSC
T ss_pred CCeEEEE-ECCCCCCCHHHHHHHHHHHHHHCCCEEEE------Eec--cc------c------HHHHHhcCCEEEECCCc
Confidence 4689999 6863 12344 4899999999976432 221 00 0 12568899999999953
Q ss_pred CCCc-----hhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 371 GNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 371 G~rg-----~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
-.+- ..++..+++.+.++++|++|||+|||+|+
T Consensus 90 ~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~ 127 (229)
T 1fy2_A 90 TFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLAC 127 (229)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTS
T ss_pred HHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhc
Confidence 2221 13577888888888999999999999984
|
| >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00016 Score=69.29 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=63.7
Q ss_pred CceEEEEEeecCCCcc-hHHHHHHHHHHcCCcceeeeEEEEecCCC-CCCc----cccCCchhhhHHHHhccCCCEEEeC
Q 007533 294 EPVRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACD-LEDA----TEKENPDAYKAAWKLLKGADGILVP 367 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~D-aY~SIi~AL~haG~~~~v~v~i~wi~s~~-le~~----~~~~~p~~y~~a~~~L~~~DGIlVP 367 (599)
...||+++ -|....+ ......+.|+.+|+++.+ ...+... +... ....+. .+.+ -...++|+|+||
T Consensus 22 ~~~kV~il-l~~g~~~~e~~~~~~~l~~ag~~v~~----vs~~~~~~v~~~~g~~~v~~~~-~l~~--~~~~~~D~livp 93 (193)
T 1oi4_A 22 LSKKIAVL-ITDEFEDSEFTSPADEFRKAGHEVIT----IEKQAGKTVKGKKGEASVTIDK-SIDE--VTPAEFDALLLP 93 (193)
T ss_dssp CCCEEEEE-CCTTBCTHHHHHHHHHHHHTTCEEEE----EESSTTCEEECTTSSCEEECCE-EGGG--CCGGGCSEEEEC
T ss_pred cCCEEEEE-ECCCCCHHHHHHHHHHHHHCCCEEEE----EECCCCcceecCCCCeEEECCC-ChHH--CCcccCCEEEEC
Confidence 34689988 4655543 356789999999876543 1111111 1000 000000 1100 013578999999
Q ss_pred CCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 368 GGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 368 GGfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
||+|.. ..+..+..++.+.++++|+.|||.|.|+|+-
T Consensus 94 GG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~ 133 (193)
T 1oi4_A 94 GGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLIS 133 (193)
T ss_dssp CBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHH
T ss_pred CCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHH
Confidence 997642 2345778888888999999999999999864
|
| >3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00079 Score=62.42 Aligned_cols=100 Identities=13% Similarity=0.262 Sum_probs=62.1
Q ss_pred ceEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCCCCCC-c--cccCCchhhhHHHHhc--cCCCEEEeCC
Q 007533 295 PVRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDLED-A--TEKENPDAYKAAWKLL--KGADGILVPG 368 (599)
Q Consensus 295 ~v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~-~--~~~~~p~~y~~a~~~L--~~~DGIlVPG 368 (599)
.+||+++ =|....+. .....+.|+.+|+++.+- ..+...+.. . ....+. .+ +.+ ..+|+|+|||
T Consensus 2 ~~ki~il-~~~g~~~~e~~~~~~~l~~ag~~v~~v----s~~~~~v~~~~g~~i~~~~-~~----~~~~~~~~D~livpG 71 (168)
T 3l18_A 2 SMKVLFL-SADGFEDLELIYPLHRIKEEGHEVYVA----SFQRGKITGKHGYSVNVDL-TF----EEVDPDEFDALVLPG 71 (168)
T ss_dssp CCEEEEE-CCTTBCHHHHHHHHHHHHHTTCEEEEE----ESSSEEEECTTSCEEEECE-EG----GGCCGGGCSEEEECC
T ss_pred CcEEEEE-eCCCccHHHHHHHHHHHHHCCCEEEEE----ECCCCEEecCCCcEEeccC-Ch----hHCCHhhCCEEEECC
Confidence 4688888 46555433 557888999998765431 111000000 0 000000 01 122 3689999999
Q ss_pred CCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 369 GFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 369 GfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
|+|.. ..+..+..++.+.++++|+.+||-|.++|+-
T Consensus 72 G~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~ 110 (168)
T 3l18_A 72 GKAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILIS 110 (168)
T ss_dssp BSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHH
T ss_pred CcCHHHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 98642 2355778899999999999999999999863
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0051 Score=57.66 Aligned_cols=97 Identities=15% Similarity=0.213 Sum_probs=70.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||.|.|+++ -.|.||=.+|+.++..|..+|.+|..+..||.-|.- .|+..
T Consensus 1 M~vi~v~s~-kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~-----------------------------~~~~~ 50 (206)
T 4dzz_A 1 MKVISFLNP-KGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT-----------------------------NWSKA 50 (206)
T ss_dssp CEEEEECCS-STTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-----------------------------HHHTT
T ss_pred CeEEEEEeC-CCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH-----------------------------HHHhc
Confidence 888989876 788999999999999999999999999999753321 01100
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
. .. .+.++|--.+.+.+.+.++. ..+|++||+.++..++ ...
T Consensus 51 ~---~~-----------------------~~~~~~~~~~~l~~~l~~l~--------~~yD~viiD~~~~~~~----~~~ 92 (206)
T 4dzz_A 51 G---KA-----------------------AFDVFTAASEKDVYGIRKDL--------ADYDFAIVDGAGSLSV----ITS 92 (206)
T ss_dssp S---CC-----------------------SSEEEECCSHHHHHTHHHHT--------TTSSEEEEECCSSSSH----HHH
T ss_pred C---CC-----------------------CCcEEecCcHHHHHHHHHhc--------CCCCEEEEECCCCCCH----HHH
Confidence 0 00 04566655688888888875 3689999999998854 334
Q ss_pred HHHHH
Q 007533 161 EALGQ 165 (599)
Q Consensus 161 ea~rq 165 (599)
.+++.
T Consensus 93 ~~l~~ 97 (206)
T 4dzz_A 93 AAVMV 97 (206)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45443
|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.012 Score=58.88 Aligned_cols=171 Identities=13% Similarity=0.143 Sum_probs=94.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCcc----cc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNY----ER 76 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~y----er 76 (599)
||-||||| .=++.||=++++.|.+.|+.+|++|...| | .+.|-. ..+| .|-|...+ .|
T Consensus 21 ~k~i~Itg-T~t~vGKT~vs~gL~~~L~~~G~~V~~fK--P-----------v~~g~~--~~~~--~~~D~~~~~~~~~~ 82 (242)
T 3qxc_A 21 GHMLFISA-TNTNAGKTTCARLLAQYCNACGVKTILLK--P-----------IETGVN--DAIN--HSSDAHLFLQDNRL 82 (242)
T ss_dssp CEEEEEEE-SSTTSSHHHHHHHHHHHHHHTTCCEEEEC--C-----------EECSCC--TTTC--CCSHHHHHHHHHHT
T ss_pred CcEEEEEe-CCCCCcHHHHHHHHHHHHHhCCCceEEEe--e-----------eecCCc--ccCC--CCchHHHHHHHHHH
Confidence 47889986 56999999999999999999999999988 2 222210 0001 22233333 34
Q ss_pred cc-CCCCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccccc-
Q 007533 77 FM-DIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI- 154 (599)
Q Consensus 77 fl-~~~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdi- 154 (599)
+. ++....-+-++--.-.+--+..++.|.+ +. ---++|++.+++++ .+.|++|||==|-+.+.
T Consensus 83 ~~~g~~~~~~~p~~~~~p~sp~~aa~~~g~~--~~-----i~~~~I~~~~~~l~--------~~~D~vlIEGagGl~~pl 147 (242)
T 3qxc_A 83 LDRSLTLKDISFYRYHKVSAPLIAQQEEDPN--AP-----IDTDNLTQRLHNFT--------KTYDLVIVEGAGGLCVPI 147 (242)
T ss_dssp TCTTCCHHHHCCEECSSSSCHHHHHHHHCTT--CC-----CCHHHHHHHHHHGG--------GTCSEEEEECCSCTTCBS
T ss_pred HhCCCChHHeeeEEECCCCChHHHHHHcCCC--Cc-----CCHHHHHHHHHHHH--------hcCCEEEEECCCCccccc
Confidence 33 2221000000000000111222333432 11 13478888888876 36899999976655542
Q ss_pred -ccchHHHHHHHhhhHcCCCCEEEEeeeeeeeecCC-CccccCCchhhhhhhhcCCCcccEEEEecC
Q 007533 155 -ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVV-GEQKTKPTQHSVRGLRGQGLTPNILACRST 219 (599)
Q Consensus 155 -es~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~-~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~ 219 (599)
+..-..+-++++... + |.+.... |- -.-|.-+++.|+..|+. .++|+-..
T Consensus 148 ~~~~~~adlA~~l~~p-----V-------ILV~~~~lg~--i~~~~lt~~~l~~~g~~-~GvIlN~v 199 (242)
T 3qxc_A 148 TLEENMLDFALKLKAK-----M-------LLISHDNLGL--INDCLLNDFLLKSHQLD-YKIAINLK 199 (242)
T ss_dssp SSSCBHHHHHHHHTCE-----E-------EEEECCSTTH--HHHHHHHHHHHHTSSSC-EEEEECCC
T ss_pred cccchHHHHHHHcCCC-----E-------EEEEcCCCcH--HHHHHHHHHHHHhCCCC-EEEEEeCC
Confidence 333445566665432 1 1122211 21 22466677888899999 88887543
|
| >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.012 Score=55.40 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=61.2
Q ss_pred ceEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCCCCCC------c--cccCCchhhhHHHHh--ccCCCE
Q 007533 295 PVRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDLED------A--TEKENPDAYKAAWKL--LKGADG 363 (599)
Q Consensus 295 ~v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~------~--~~~~~p~~y~~a~~~--L~~~DG 363 (599)
..+|+++ -|....+. +....+.|+.+++++.+ ...+...+.. . ....+. .+ +. ..++|+
T Consensus 9 ~~~v~il-~~~g~~~~e~~~~~~~l~~ag~~v~~----vs~~~~~v~~~~~~~~~g~~v~~~~-~~----~~~~~~~~D~ 78 (190)
T 2vrn_A 9 GKKIAIL-AADGVEEIELTSPRAAIEAAGGTTEL----ISLEPGEIQSMKGDIEPQEKYRVDH-VV----SEVQVSDYDG 78 (190)
T ss_dssp TCEEEEE-CCTTCBHHHHHHHHHHHHHTTCEEEE----EESSSSEEEEEETTTEEEEEEECSE-EG----GGCCGGGCSE
T ss_pred CCEEEEE-eCCCCCHHHHHHHHHHHHHCCCEEEE----EecCCCccccccccccCCcEEeCCC-Ch----hhCChhhCCE
Confidence 4689988 46555432 55678889999876543 1111110100 0 000000 11 12 257899
Q ss_pred EEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 364 ILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 364 IlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
|+||||++. +..+..+..++.+.++++|+.+||.|-++|+-
T Consensus 79 livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~ 123 (190)
T 2vrn_A 79 LLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSE 123 (190)
T ss_dssp EEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHH
T ss_pred EEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHh
Confidence 999999742 23456778899998999999999999999863
|
| >2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0081 Score=57.25 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=61.5
Q ss_pred eEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCC-CCCCc-cccCCch-hhhHHHHhccCCCEEEeCCCCC
Q 007533 296 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPAC-DLEDA-TEKENPD-AYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 296 v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~-~le~~-~~~~~p~-~y~~a~~~L~~~DGIlVPGGfG 371 (599)
.||+++ =|....+. +....+.|+.+++++.+ ...+.. .+... ...-.++ .+.++. ...++|+|+||||++
T Consensus 4 ~~v~il-l~~g~~~~e~~~~~~~l~~ag~~v~~----vs~~~~~~v~~~~g~~v~~d~~l~~~~-~~~~~D~livpGG~~ 77 (197)
T 2rk3_A 4 KRALVI-LAKGAEEMETVIPVDVMRRAGIKVTV----AGLAGKDPVQCSRDVVICPDASLEDAK-KEGPYDVVVLPGGNL 77 (197)
T ss_dssp CEEEEE-ECTTCCHHHHHHHHHHHHHTTCEEEE----EETTCSSCEECTTSCEECCSEEHHHHH-TTCCCSEEEECCCHH
T ss_pred CEEEEE-ECCCCcHHHHHHHHHHHHHCCCEEEE----EEcCCCCccccCCCCEEeCCcCHHHcC-CccCCCEEEECCCch
Confidence 478877 36555433 45678899999876543 111111 01100 0000010 111110 127899999999974
Q ss_pred CC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 372 NR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 372 ~r----g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.. ..+..+..++.+.++++|+.+||-|-++|+-
T Consensus 78 ~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~ 114 (197)
T 2rk3_A 78 GAQNLSESAAVKEILKEQENRKGLIATICAGPTALLA 114 (197)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHH
T ss_pred hHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHH
Confidence 22 2345778888888999999999999998863
|
| >4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0056 Score=58.27 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=39.3
Q ss_pred ccCCCEEEeCCCCCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg---~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..++|+|+||||+|... .+..+..++.+.++++|+.+||-|-++|+-
T Consensus 67 ~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~ 116 (177)
T 4hcj_A 67 AVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMAN 116 (177)
T ss_dssp GGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHHH
T ss_pred HhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccHHHHHH
Confidence 45789999999988643 356788899999999999999999988853
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.018 Score=56.69 Aligned_cols=193 Identities=13% Similarity=0.151 Sum_probs=101.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||-||||| .=++.||=++++.|.+.|+.+|++|...| |.++|-.+ .+|| ..|-|.-. +..+.
T Consensus 4 mk~i~Itg-t~t~vGKT~vt~~L~~~l~~~G~~V~~~K-------------Pv~~g~~~-~~~~-~~~~D~~~--~~~~~ 65 (228)
T 3of5_A 4 MKKFFIIG-TDTEVGKTYISTKLIEVCEHQNIKSLCLK-------------PVASGQSQ-FSEL-CEDVESIL--NAYKH 65 (228)
T ss_dssp CEEEEEEE-SSSSSCHHHHHHHHHHHHHHTTCCEEEEC-------------SEEESBCS-SSSS-BHHHHHHH--HHTTT
T ss_pred CcEEEEEe-CCCCCCHHHHHHHHHHHHHHCCCeeEEec-------------ceeecCcc-CCCC-CChHHHHH--HhcCC
Confidence 78899986 56999999999999999999999999866 45555322 1222 21122211 22222
Q ss_pred CCCCCCcccchHhh----HHHHhhhhcCCCCCCeeEEcccchHHHHHHHHH-HhcccCCCCCCCCcEEEEeeCccccc--
Q 007533 81 KLTRDNNITTGKIY----QSVIDKERKGDYLGKTVQVVPHITDEIQDWIER-VAMIPVDGKEGPVDVCVIELGGTIGD-- 153 (599)
Q Consensus 81 ~l~~~~n~ttgkiy----~~vi~ker~g~ylg~tvqviphit~~i~~~i~~-~~~~p~d~~~~~~dv~i~e~ggtvgd-- 153 (599)
.++.++ + ..-.| +--+..++.|. +---+.|++.+++ ++ .++|++|||--|-+.+
T Consensus 66 ~~~~~~-~-~~~~~~~p~sp~~aa~~~~~---------~i~~~~i~~~~~~~l~--------~~~D~vlIEgaggl~~p~ 126 (228)
T 3of5_A 66 KFTAAE-I-NLISFNQAVAPHIIAAKTKV---------DISIENLKQFIEDKYN--------QDLDILFIEGAGGLLTPY 126 (228)
T ss_dssp SSCHHH-H-CSEEESSSSCHHHHHHHTTC---------CCCHHHHHHHHHGGGG--------SSCSEEEEEEEEETTCBS
T ss_pred CCChhh-E-EEEEECCCCCHHHHHHHcCC---------CCCHHHHHHHHHHHHH--------ccCCEEEEECCCcccccc
Confidence 211100 0 00011 00111122221 1123778888887 65 3789999996554433
Q ss_pred cccchHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCC---CChhhhhcc
Q 007533 154 IESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA---LDDNVKGKL 230 (599)
Q Consensus 154 ies~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~---l~~~~~~Ki 230 (599)
-+..-..+-++++... +++ +... +-..-.-+..+++.|+..|+..-++|.-...+ .....++.+
T Consensus 127 ~~~~~~adla~~l~~p-----viL-------V~~~-~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l 193 (228)
T 3of5_A 127 SDHTTQLDLIKALQIP-----VLL-------VSAI-KVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDEQINTI 193 (228)
T ss_dssp SSSCBHHHHHHHHTCC-----EEE-------EEEC-STTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHH
T ss_pred ccchhHHHHHHHcCCC-----EEE-------EEcC-CcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHH
Confidence 1233344555555321 222 1211 11112245667778888999888777754322 223344445
Q ss_pred ccCCCCCCCCeee
Q 007533 231 SQFCHVPEQNIIT 243 (599)
Q Consensus 231 slfc~v~~~~Vi~ 243 (599)
.-.+.++-=.+|-
T Consensus 194 ~~~~g~pvLG~iP 206 (228)
T 3of5_A 194 EELSGYKCSAKIS 206 (228)
T ss_dssp HHHHSCCCSEEEE
T ss_pred HHhhCCCEEEECC
Confidence 4444554444433
|
| >4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.015 Score=55.06 Aligned_cols=101 Identities=11% Similarity=0.089 Sum_probs=59.7
Q ss_pred eEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecC-CCCCCc---cccCCchhhhHHHHhccCCCEEEeCCCC
Q 007533 296 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPA-CDLEDA---TEKENPDAYKAAWKLLKGADGILVPGGF 370 (599)
Q Consensus 296 v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s-~~le~~---~~~~~p~~y~~a~~~L~~~DGIlVPGGf 370 (599)
.||+++ =+..+.+. +....+.|+.+|+++.+ ...+. ..+... ....+. .+.+ -....+|.|+||||+
T Consensus 6 kkv~il-l~~g~~~~e~~~~~~~l~~ag~~v~~----~s~~~~~~v~~~~g~~i~~d~-~l~~--~~~~~~D~livpGG~ 77 (190)
T 4e08_A 6 KSALVI-LAPGAEEMEFIIAADVLRRAGIKVTV----AGLNGGEAVKCSRDVQILPDT-SLAQ--VASDKFDVVVLPGGL 77 (190)
T ss_dssp CEEEEE-ECTTCCHHHHHHHHHHHHHTTCEEEE----EESSSSSCEECTTSCEEECSE-ETGG--GTTCCCSEEEECCCH
T ss_pred cEEEEE-ECCCchHHHHHHHHHHHHHCCCEEEE----EECCCCcceecCCCcEEECCC-CHHH--CCcccCCEEEECCCC
Confidence 467776 34444332 55678999999876543 11111 111100 000000 0111 012468999999995
Q ss_pred C-CC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 371 G-NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 371 G-~r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
+ .. ..+..+..++.+.++++|+.+||-|-++|+-
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~ 115 (190)
T 4e08_A 78 GGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAK 115 (190)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHH
T ss_pred hHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHH
Confidence 3 22 2245778889999999999999999999863
|
| >2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.015 Score=56.02 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=60.2
Q ss_pred eEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCC---CCCCc---cccCCchhhhHHHHhccCCCEEEeCC
Q 007533 296 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPAC---DLEDA---TEKENPDAYKAAWKLLKGADGILVPG 368 (599)
Q Consensus 296 v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~---~le~~---~~~~~p~~y~~a~~~L~~~DGIlVPG 368 (599)
.||+++ =|....+. .....+.|+.+|+++.+ ...+.. .+... ....+ ..+.+ -...++|+|+|||
T Consensus 3 ~kV~il-l~~g~~~~e~~~~~~~l~~ag~~v~~----vs~~~~~~~~v~~~~g~~v~~~-~~l~~--~~~~~~D~livpG 74 (205)
T 2ab0_A 3 ASALVC-LAPGSEETEAVTTIDLLVRGGIKVTT----ASVASDGNLAITCSRGVKLLAD-APLVE--VADGEYDVIVLPG 74 (205)
T ss_dssp CEEEEE-ECTTCCHHHHHHHHHHHHHTTCEEEE----EECSSTTCCEEECTTSCEEECS-EEHHH--HTTSCCSEEEECC
T ss_pred cEEEEE-EcCCCcHHHHHHHHHHHHHCCCEEEE----EeCCCCCCceeecCCCeEEecC-CCHHH--CCcccCCEEEECC
Confidence 367777 35544332 45678899999876543 121111 01000 00001 01111 1136899999999
Q ss_pred CCCCC----chhHHHHHHHHHHHcCCCEEEEehhH-HHHH
Q 007533 369 GFGNR----GVQGKILAAKYAREHRIPYLGICLGM-QVAV 403 (599)
Q Consensus 369 GfG~r----g~eg~i~aik~are~~iP~LGICLGm-Qll~ 403 (599)
|++.. ..+..+..++.+.++++|+.+||-|- ++|+
T Consensus 75 G~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa 114 (205)
T 2ab0_A 75 GIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLV 114 (205)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTT
T ss_pred CcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHH
Confidence 97532 23457788888889999999999999 8875
|
| >3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.019 Score=55.65 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=62.6
Q ss_pred CceEEEEEeecCCCcch-HHHHHHHHHHcCCcce-eeeEEEEecCCC--CCCc---cccCCchhhhHHHHhccCCCEEEe
Q 007533 294 EPVRIAMVGKYTGLSDA-YLSILKALLHASVDLR-KKLVIDWIPACD--LEDA---TEKENPDAYKAAWKLLKGADGILV 366 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~-v~v~i~wi~s~~--le~~---~~~~~p~~y~~a~~~L~~~DGIlV 366 (599)
...+|+++ =|....+. +...++.|..++.... -..++..+..+. +... ....+. ..+.+.++|.|+|
T Consensus 7 ~~~~v~il-l~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~-----~~~~~~~~D~liv 80 (209)
T 3er6_A 7 KNLRVVAL-APTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTA-----QWQSFDFTNILII 80 (209)
T ss_dssp CCEEEEEE-CCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSS-----CGGGCSCCSEEEE
T ss_pred CCeEEEEE-EeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCc-----CccccCCCCEEEE
Confidence 45688888 46666544 5567788877651100 001122232211 1100 000010 1134578999999
Q ss_pred CCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 367 PGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 367 PGGfG~r-----g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
|||.+.. ..+..+..++.+.++++++.+||-|-.+|+-
T Consensus 81 pGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~ 123 (209)
T 3er6_A 81 GSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAK 123 (209)
T ss_dssp CCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHH
T ss_pred CCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHH
Confidence 9997642 2456788899999999999999999988864
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.092 Score=51.30 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=37.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
||.|.|+++ -.|.||=.+|+.++..|..+|++|..+..||.
T Consensus 2 ~~~I~v~s~-kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 2 VRTITVASG-KGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp CEEEEEEES-SSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECC-CCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 478888875 57999999999999999999999999999985
|
| >3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.013 Score=58.64 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=39.5
Q ss_pred cCCCEEEeCCCCCC---------------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 359 KGADGILVPGGFGN---------------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 359 ~~~DGIlVPGGfG~---------------rg~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
.++|+|+||||+|. +..+.....++.+.++++|+.+||-|-.+|+-+
T Consensus 106 ~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~a 167 (242)
T 3l3b_A 106 EEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVAL 167 (242)
T ss_dssp GGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHH
T ss_pred ccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 57899999999863 233667888999999999999999999998754
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.044 Score=54.96 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=89.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||-||||| .=|+.||=++++.|.+.|+.+|++|...| |.+.|-. .|+ -|.....+..+.
T Consensus 26 m~~i~Itg-t~t~vGKT~vt~gL~~~l~~~G~~V~~fK-------------Pv~~g~~---~~~----~D~~~~~~~~g~ 84 (251)
T 3fgn_A 26 MTILVVTG-TGTGVGKTVVCAALASAARQAGIDVAVCK-------------PVQTGTA---RGD----DDLAEVGRLAGV 84 (251)
T ss_dssp CEEEEEEE-SSTTSCHHHHHHHHHHHHHHTTCCEEEEE-------------EEECCGG---GTC----CHHHHHHHHHCC
T ss_pred CCEEEEEe-CCCCCcHHHHHHHHHHHHHHCCCeEEEEe-------------eeecCCC---CCC----HHHHHHHHHcCC
Confidence 67888885 67999999999999999999999999988 2233210 111 222222333322
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccccc--cc-c
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI--ES-M 157 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdi--es-~ 157 (599)
... .|-++--.-.+--+..++.|.. +---++|++.+++.+ .++|++|||==|-+.|- +. .
T Consensus 85 ~~~-~~~~~~~~p~sP~~aa~~~~~~--------~~~~~~i~~~~~~l~--------~~~D~vlIEGagGl~~pl~~~~~ 147 (251)
T 3fgn_A 85 TQL-AGLARYPQPMAPAAAAEHAGMA--------LPARDQIVRLIADLD--------RPGRLTLVEGAGGLLVELAEPGV 147 (251)
T ss_dssp CEE-EEEEECSSSSCHHHHHHHTTCC--------CCCHHHHHHHHHTTC--------CTTCEEEEECSSSTTCEEETTTE
T ss_pred CCC-CCCeeECCCCChHHHHHHcCCC--------CCCHHHHHHHHHHHH--------hcCCEEEEECCCCCcCCcCcccc
Confidence 111 0000000000111122222220 011356788777764 47899999975555431 11 2
Q ss_pred hHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEec
Q 007533 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRS 218 (599)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~ 218 (599)
-..+-++++... ++ .+... +.---.-+.-+++.|+..|+..-++|+-.
T Consensus 148 ~~adla~~l~~p-----VI-------LV~~~-~~g~i~~~~lt~~~l~~~g~~i~GvIlN~ 195 (251)
T 3fgn_A 148 TLRDVAVDVAAA-----AL-------VVVTA-DLGTLNHTKLTLEALAAQQVSCAGLVIGS 195 (251)
T ss_dssp EHHHHHHHTTCE-----EE-------EEECS-STTHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred hHHHHHHHcCCC-----EE-------EEEcC-CCccHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 333444544321 11 12222 11112235667778888999999888854
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.023 Score=53.79 Aligned_cols=44 Identities=20% Similarity=0.071 Sum_probs=36.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTD 46 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy-ln~d 46 (599)
|+.|.++| .||-||-.++..|-..|+.+|++|..+|.||. .++|
T Consensus 4 ~~~i~i~G--~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~~diD 48 (169)
T 1xjc_A 4 MNVWQVVG--YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPA 48 (169)
T ss_dssp CCEEEEEC--CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC------
T ss_pred CEEEEEEC--CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCCcccc
Confidence 57788898 78999999999999999999999999999997 5666
|
| >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.019 Score=53.41 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=37.6
Q ss_pred cCCCEEEeCCC--C-CCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGG--F-GNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGG--f-G~r------g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.++|.|+|||| + +.. ..+.....++.+.++++|+.+||.|-++|+-
T Consensus 65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~ 119 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDF 119 (175)
T ss_dssp GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHH
T ss_pred ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHH
Confidence 67899999999 6 542 2345778888888999999999999998864
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.21 Score=49.20 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=37.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
+|-|.|+++ -.|.||=.+|+.++..|..+|+||-.+..||.-
T Consensus 18 ~~vI~v~s~-kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSG-KGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECS-SSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcC-CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 467788776 479999999999999999999999999999986
|
| >3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.1 Score=59.34 Aligned_cols=97 Identities=12% Similarity=0.087 Sum_probs=62.9
Q ss_pred CceEEEEEeecCCCcc-hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~D-aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
.+.||||+-.=+...+ ....+.++|+.+|+.+.+ |... ... ... ..|.. .....+|+|+||||...
T Consensus 536 ~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~v------Vsp~-~g~-GvD---~t~~~--~~s~~fDAVvlPGG~~~ 602 (688)
T 3ej6_A 536 ATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTV------IAEY-LAS-GVD---QTYSA--ADATAFDAVVVAEGAER 602 (688)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEE------EESS-CCT-TCC---EETTT--CCGGGCSEEEECTTCCT
T ss_pred cCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEE------EeCC-CCC-Ccc---cCccc--CChhcCcEEEECCCccc
Confidence 3468988721111222 467899999999998865 2221 110 000 01111 11357899999999532
Q ss_pred -----------CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 373 -----------RGVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 373 -----------rg~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
+.....+..++.+.++++|+-.||-|-|+|.
T Consensus 603 ~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~ 644 (688)
T 3ej6_A 603 VFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQ 644 (688)
T ss_dssp TTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHH
T ss_pred ccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHH
Confidence 2335678899999999999999999999995
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.062 Score=56.68 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=38.8
Q ss_pred ccCCCEEEeCCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..++|.|+||||++.. ..+..+..++.+.++++|+.+||-|-++|+-
T Consensus 280 ~~~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~ 329 (396)
T 3uk7_A 280 SSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAA 329 (396)
T ss_dssp GGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHH
T ss_pred cccCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHH
Confidence 3579999999998642 2355778899999999999999999999864
|
| >3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.044 Score=53.09 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=38.2
Q ss_pred cCCCEEEeCCCCCCC-chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG~r-g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.++|.|+||||.|.. ..+..+..++.+.++++|+.+||-|-++|+-
T Consensus 62 ~~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~ 108 (206)
T 3f5d_A 62 ANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAVDFLAK 108 (206)
T ss_dssp SCCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred cCCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEECHHHHHHHH
Confidence 478999999998654 3345778889888999999999999999853
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.08 Score=52.06 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=37.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
||.|.|+++ -.|.||=.+|+.++..|. +|+||-.+.+||.-|
T Consensus 27 ~~vI~v~s~-kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~ 68 (267)
T 3k9g_A 27 PKIITIASI-KGGVGKSTSAIILATLLS-KNNKVLLIDMDTQAS 68 (267)
T ss_dssp CEEEEECCS-SSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCH
T ss_pred CeEEEEEeC-CCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCC
Confidence 467777766 589999999999999999 999999999999754
|
| >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.02 Score=56.12 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=39.0
Q ss_pred cCCCEEEeCCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 359 KGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 359 ~~~DGIlVPGGfG~r--------------g~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
.++|+|+||||+|.. ..+.....++.+.++++|+.+||-|-++|+-+
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 149 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI 149 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH
Confidence 579999999998741 13557888999999999999999999998644
|
| >2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.017 Score=54.49 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=37.4
Q ss_pred cCCCEEEeCCCCCC--CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFGN--RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG~--rg~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.++|+|+||||.+. +..+..+..++.+.++++|+.+||-|-++|+-
T Consensus 62 ~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~ 109 (188)
T 2fex_A 62 VDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGG 109 (188)
T ss_dssp TTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHH
T ss_pred ccCCEEEECCCCcccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHH
Confidence 37899999999753 22345678889999999999999999999863
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.26 Score=49.26 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=35.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|-|.|+++ -.|.||=.+|+.++..|..+|+||-.+..||+
T Consensus 5 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 44 (286)
T 2xj4_A 5 RVIVVGNE-KGGAGKSTIAVHLVTALLYGGAKVAVIDLDLR 44 (286)
T ss_dssp EEEEECCS-SSCTTHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEEcC-CCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 56777654 58899999999999999999999999999994
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.063 Score=56.64 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=39.1
Q ss_pred ccCCCEEEeCCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 358 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
...+|.|+||||++.. ..+..+..++.+.++++|+.+||-|-++|+-+
T Consensus 87 ~~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 87 LSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp GGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred cccCCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 3678999999997642 23557788899999999999999999998643
|
| >3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.06 Score=55.33 Aligned_cols=109 Identities=13% Similarity=0.064 Sum_probs=68.1
Q ss_pred HHHHHHHhhhcCCCCceEEEEEeecCC-CcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh
Q 007533 280 KEWTSRAEICDGLHEPVRIAMVGKYTG-LSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 357 (599)
Q Consensus 280 ~~W~~l~~~~~~~~~~v~IaiVGkY~~-l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~ 357 (599)
.-|+.|++.... ...+|+++- +-. ..+.|. .+.++++..|++. +. +++-.+.+. ..+| +..+.
T Consensus 43 ~i~~~~v~lagg--~~~~I~~Ip-tAs~~~~~~~~~~~~~f~~lG~~~---v~--~L~i~~r~~---a~~~----~~~~~ 107 (291)
T 3en0_A 43 EILQTFWSRSGG--NDAIIGIIP-SASREPLLIGERYQTIFSDMGVKE---LK--VLDIRDRAQ---GDDS----GYRLF 107 (291)
T ss_dssp HHHHHHHHHTTG--GGCEEEEEC-TTCSSHHHHHHHHHHHHHHHCCSE---EE--ECCCCSGGG---GGCH----HHHHH
T ss_pred HHHHHHHHHcCC--CCCeEEEEe-CCCCChHHHHHHHHHHHHHcCCCe---eE--EEEecCccc---cCCH----HHHHH
Confidence 346667766542 247999994 532 233444 5677888888842 11 122211111 0111 12356
Q ss_pred ccCCCEEEeCCCCCCC-----chhHHHHHHHHHHHcC-CCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGNR-----GVQGKILAAKYAREHR-IPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r-----g~eg~i~aik~are~~-iP~LGICLGmQll~ 403 (599)
+.++|+|+++||--.+ .-.+...+++.+.+++ +|+.|.|.|.-+++
T Consensus 108 l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~ 159 (291)
T 3en0_A 108 VEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMG 159 (291)
T ss_dssp HHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTS
T ss_pred HhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhh
Confidence 8899999999974322 1246788899999999 99999999998873
|
| >3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.06 Score=52.05 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=38.3
Q ss_pred cCCCEEEeCCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG~r--g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..+|.|+||||.+.. ..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 73 ~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~ 120 (212)
T 3efe_A 73 ESKDLLILPGGTTWSEEIHQPILERIGQALKIGTIVAAICGATDALAN 120 (212)
T ss_dssp CTTCEEEECCCSCTTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHH
T ss_pred cCCCEEEECCCCccccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHH
Confidence 389999999998754 2355788899998999999999999988853
|
| >3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.047 Score=52.61 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=60.2
Q ss_pred eEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecC-CCCCCc---cccCCchhhhHHHHh--ccCCCEEEeCC
Q 007533 296 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPA-CDLEDA---TEKENPDAYKAAWKL--LKGADGILVPG 368 (599)
Q Consensus 296 v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s-~~le~~---~~~~~p~~y~~a~~~--L~~~DGIlVPG 368 (599)
.||+++ =|..+.+. +....+.|+.+|+++.+ ...+. ..+... ....+. .+ +. ...+|.|+|||
T Consensus 10 ~~v~il-l~~g~~~~e~~~~~~~l~~ag~~v~~----vs~~g~~~v~~~~G~~v~~d~-~l----~~~~~~~~D~livpG 79 (208)
T 3ot1_A 10 KRILVP-VAHGSEEMETVIIVDTLVRAGFQVTM----AAVGDKLQVQGSRGVWLTAEQ-TL----EACSAEAFDALALPG 79 (208)
T ss_dssp CEEEEE-ECTTCCHHHHHHHHHHHHHTTCEEEE----EESSSCSEEECTTSCEEECSE-EG----GGCCGGGCSEEEECC
T ss_pred CeEEEE-ECCCCcHHHHHHHHHHHHHCCCEEEE----EEcCCCcceecCCCcEEeCCC-CH----HHCCCcCCCEEEECC
Confidence 478887 36555433 55788999999876543 11111 011100 000000 01 12 25789999999
Q ss_pred CCCC-C---chhHHHHHHHHHHHcCCCEEEEehhH-HHHH
Q 007533 369 GFGN-R---GVQGKILAAKYAREHRIPYLGICLGM-QVAV 403 (599)
Q Consensus 369 GfG~-r---g~eg~i~aik~are~~iP~LGICLGm-Qll~ 403 (599)
|.+. . ..+..+..++.+.++++|+.+||-|- .+|+
T Consensus 80 G~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La 119 (208)
T 3ot1_A 80 GVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFA 119 (208)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTT
T ss_pred CchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHH
Confidence 9742 2 23557788999999999999999998 7764
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.48 Score=51.02 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=36.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPYLN 44 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~-g~~v~~~k~dpyln 44 (599)
+.|.++| .+|.||=.+++.|+..|+.+ |.+|..+..|||-+
T Consensus 101 ~vI~ivG--~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 101 AVVLMAG--LQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp EEEEEEC--STTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 5677885 49999999999999999999 99999999999853
|
| >1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.032 Score=54.01 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=38.1
Q ss_pred cCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 359 KGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 359 ~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
..+|+|+||||.+. +..+.....++.+.++++|+.+||-|-++|+
T Consensus 88 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La 136 (224)
T 1u9c_A 88 HGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLV 136 (224)
T ss_dssp SSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGT
T ss_pred hhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHH
Confidence 57999999999874 2345678889999999999999999999874
|
| >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.1 Score=55.33 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=62.0
Q ss_pred ceEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCCC-CCC-ccc-cCCchhhhHHHHhc--cCCCEEEeCC
Q 007533 295 PVRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACD-LED-ATE-KENPDAYKAAWKLL--KGADGILVPG 368 (599)
Q Consensus 295 ~v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~-le~-~~~-~~~p~~y~~a~~~L--~~~DGIlVPG 368 (599)
..+|+++ =|..+.+. .....+.|+.+|+++.+ .-.+... +.. ... .-.++. ..+.+ ..+|.|+|||
T Consensus 10 mkkV~IL-l~dgf~~~El~~p~dvL~~Ag~~v~v----vS~~~g~~V~ss~G~~~i~~d~---~l~~v~~~~~DaLiVPG 81 (365)
T 3fse_A 10 KKKVAIL-IEQAVEDTEFIIPCNGLKQAGFEVVV----LGSRMNEKYKGKRGRLSTQADG---TTTEAIASEFDAVVIPG 81 (365)
T ss_dssp -CEEEEE-CCTTBCHHHHHHHHHHHHHTTCEEEE----EESSSSCCEECTTSCCEECCSE---ETTTCCGGGCSEEEECC
T ss_pred ceEEEEE-ECCCCcHHHHHHHHHHHHHCCCEEEE----EECCCCceeecCCCceEEeCCC---CHhhCCCcCCCEEEEEC
Confidence 4578888 36655443 45678999999876543 1111111 100 000 000000 00122 3689999999
Q ss_pred CCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 369 GFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 369 GfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
|.|.. ..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 82 G~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~ 120 (365)
T 3fse_A 82 GMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIE 120 (365)
T ss_dssp BTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHH
Confidence 98642 3356778899999999999999999999853
|
| >3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... | Back alignment and structure |
|---|
Probab=93.86 E-value=0.099 Score=59.98 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=62.4
Q ss_pred CceEEEEEeecCCCcc-hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCc---cccCCchhhhHHHHhccCCCEEEeCCC
Q 007533 294 EPVRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDA---TEKENPDAYKAAWKLLKGADGILVPGG 369 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~D-aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~---~~~~~p~~y~~a~~~L~~~DGIlVPGG 369 (599)
.+.||||+= ...+.+ ...+++++|+.+|+.+.+. -.....+... ....|. .|.. .....+|+|+||||
T Consensus 599 ~grKVaILl-aDGfEe~El~~pvdaLr~AG~~V~vV----S~~~g~V~gs~G~~V~aD~-t~~~--v~s~~fDALVVPGG 670 (753)
T 3ttv_A 599 KGRVVAILL-NDEVRSADLLAILKALKAKGVHAKLL----YSRMGEVTADDGTVLPIAA-TFAG--APSLTVDAVIVPCG 670 (753)
T ss_dssp TTCEEEEEC-CTTCCHHHHHHHHHHHHHHTCEEEEE----ESSSSEEECTTSCEEECCE-ETTT--SCGGGCSEEEECCS
T ss_pred CCCEEEEEe-cCCCCHHHHHHHHHHHHHCCCEEEEE----EcCCCeEEeCCCCEEeccc-chhh--CCCcCCCEEEECCC
Confidence 346888872 333332 3678999999999976441 1111111000 000000 0110 01235899999999
Q ss_pred CCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 370 FGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 370 fG~r---g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
|.. .....+..++.+.++++|+-+||-|-++|+
T Consensus 671 -g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa 706 (753)
T 3ttv_A 671 -NIADIADNGDANYYLMEAYKHLKPIALAGDARKFKA 706 (753)
T ss_dssp -CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGG
T ss_pred -ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHH
Confidence 643 335678899999999999999999999984
|
| >3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.073 Score=51.12 Aligned_cols=47 Identities=19% Similarity=0.071 Sum_probs=39.1
Q ss_pred ccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..++|.|+||||.+.... +..+..++.+.++++++.+||-|-.+|+-
T Consensus 69 ~~~~D~livpGG~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~ 116 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKYPELDRLLNDCAAHGMALGGLWNGAWFLGR 116 (202)
T ss_dssp GTTCSEEEEECCTTCCSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHH
T ss_pred CCCCCEEEEeCCCchhhccHHHHHHHHHHHhhCCEEEEECHHHHHHHH
Confidence 568999999999765321 66788889888999999999999999864
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.14 Score=48.91 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=35.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|| |.|+| -.|.||=.+|+.++..|..+|+||-.+..||-
T Consensus 1 mk-I~vs~--kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 1 MK-LAVAG--KGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp CE-EEEEC--SSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred CE-EEEec--CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 78 45564 89999999999999999999999999999994
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.11 Score=49.96 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=37.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPY 42 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~-g~~v~~~k~dpy 42 (599)
||.|.|+++ -.|.||=.+|+.++..|..+ |+||-.+.+||.
T Consensus 4 ~~vI~v~s~-kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSA-KGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEES-STTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECC-CCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 578888876 58999999999999999999 999999999997
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.19 Score=51.20 Aligned_cols=153 Identities=18% Similarity=0.259 Sum_probs=90.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-------ccCCCCCCCccccceEEEccCCccccCCCCc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-------LNTDAGTMSPFEHGEVFVLDDGGEVDLDLGN 73 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy-------ln~d~gtmsp~~hgevfv~~dg~e~dldlg~ 73 (599)
+|-|+|||. -.|.||=.+|+.++..|...|.||-.|..||. +++++ +.| -+|+
T Consensus 104 ~kvI~vts~-kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~------~~g---------l~~~---- 163 (299)
T 3cio_A 104 NNILMITGA-TPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSN------EHG---------LSEY---- 163 (299)
T ss_dssp CCEEEEEES-SSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCC------SSS---------HHHH----
T ss_pred CeEEEEECC-CCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCC------CCC---------HHHH----
Confidence 367888864 57999999999999999999999999999983 22221 111 0111
Q ss_pred cccccCCCCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEccc-----------chHHHHHHHHHHhcccCCCCCCCCcE
Q 007533 74 YERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPH-----------ITDEIQDWIERVAMIPVDGKEGPVDV 142 (599)
Q Consensus 74 yerfl~~~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviph-----------it~~i~~~i~~~~~~p~d~~~~~~dv 142 (599)
|. .. .-..++|.+-.. ..+.|+|- -.+.+++.|+.+. ..+|+
T Consensus 164 ----L~----~~------~~l~~~i~~~~~-----~~l~vl~~g~~~~~~~ell~~~~l~~ll~~l~--------~~yD~ 216 (299)
T 3cio_A 164 ----LA----GK------DELNKVIQHFGK-----GGFDVITRGQVPPNPSELLMRDRMRQLLEWAN--------DHYDL 216 (299)
T ss_dssp ----HT----TS------SCHHHHCEEETT-----TTEEEECCCSCCSCHHHHHTSHHHHHHHHHHH--------HHCSE
T ss_pred ----Cc----CC------CCHHHhhhccCC-----CCEEEEECCCCCCCHHHHhCHHHHHHHHHHHH--------hCCCE
Confidence 00 00 012233332110 22445542 1245666676664 36899
Q ss_pred EEEeeCccccccccchHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEe
Q 007533 143 CVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (599)
Q Consensus 143 ~i~e~ggtvgdies~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R 217 (599)
|||+..+..+-- +|. .+.... + ..+++.- .+....+-++.+++.|+..|+..-++|+-
T Consensus 217 VIIDtpp~~~~~------d~~-~l~~~a---d-----~vilV~~--~~~~~~~~~~~~~~~l~~~~~~~~GvVlN 274 (299)
T 3cio_A 217 VIVDTPPMLAVS------DAA-VVGRSV---G-----TSLLVAR--FGLNTAKEVSLSMQRLEQAGVNIKGAILN 274 (299)
T ss_dssp EEEECCCTTTCT------HHH-HHGGGC---S-----EEEEEEE--TTTSCTTHHHHHHHHHHHTTCCCCCEEEE
T ss_pred EEEcCCCCchhH------HHH-HHHHHC---C-----EEEEEEc--CCCChHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 999999876521 111 111111 1 2223322 35555567888999999999887766664
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.83 Score=49.52 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
+.|+++|- +|.||=.+++.|+..|+.+|++|..+..|||-
T Consensus 101 ~vIlivG~--~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 101 TILLMVGI--QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp EEEEEECC--TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred eEEEEECc--CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 46777775 99999999999999999999999999999973
|
| >1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.034 Score=54.95 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=37.5
Q ss_pred cCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 359 KGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 359 ~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.++|+|+||||.|. +..+.....++.+.++++|+.+||-|-.+|+
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La 145 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFD 145 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGT
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHH
Confidence 46899999999874 2335678899999999999999999998764
|
| >2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=92.78 E-value=0.15 Score=53.71 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=35.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+|-|||||==. ++||+.++..+-+.|+.+|++|..++.-.+
T Consensus 169 ~~ri~v~GTDt-~vGKt~t~~~L~~~l~~~G~~v~~v~tgqt 209 (350)
T 2g0t_A 169 IKVVGVFGTDC-VVGKRTTAVQLWERALEKGIKAGFLATGQT 209 (350)
T ss_dssp SEEEEEEESSS-SSSHHHHHHHHHHHHHHTTCCEEEEECSHH
T ss_pred ceEEEEecCCC-CccCccHHHHHHHHHHhcCCeEEEEccCce
Confidence 36789998666 599999999999999999999999887665
|
| >3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A | Back alignment and structure |
|---|
Probab=92.76 E-value=0.094 Score=51.60 Aligned_cols=102 Identities=13% Similarity=0.119 Sum_probs=60.3
Q ss_pred ceEEEEEeecCCCcch-HHHHHHHHHH-cCCcceeeeEEEEecCCCCCCc-cccCCchhhhHHHHhccCCCEEEeCCCCC
Q 007533 295 PVRIAMVGKYTGLSDA-YLSILKALLH-ASVDLRKKLVIDWIPACDLEDA-TEKENPDAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 295 ~v~IaiVGkY~~l~Da-Y~SIi~AL~h-aG~~~~v~v~i~wi~s~~le~~-~~~~~p~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
..+|+++ =|..+.+. .....+.|.. .++++ .+.+.+...+... ...-.++ ...+.+.++|.|+||||+|
T Consensus 5 ~~~V~il-l~~gf~~~e~~~p~evl~~~~~~~v----~~vs~~~~~V~~~~G~~v~~d---~~l~~~~~~D~livpGG~g 76 (231)
T 3noq_A 5 AVQIGFL-LFPEVQQLDLTGPHDVLASLPDVQV----HLIWKEPGPVVASSGLVLQAT---TSFADCPPLDVICIPGGTG 76 (231)
T ss_dssp CEEEEEE-CCTTCCHHHHHHHHHHHTTSTTEEE----EEEESSSEEEECTTSCEEEEC---EETTTCCCCSEEEECCSTT
T ss_pred cEEEEEE-EeCCCcHHHHHHHHHHHHcCCCCEE----EEEECCCCcEEcCCCCEEecc---cChhHCCcCCEEEECCCCC
Confidence 3678888 46655433 4456777776 44433 2333221111100 0000000 0012345799999999987
Q ss_pred CC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 372 NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 372 ~r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.. ..+..+..++.+.++++++.+||-|-.+|+-
T Consensus 77 ~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~ 112 (231)
T 3noq_A 77 VGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGA 112 (231)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 53 2356778888888899999999999988853
|
| >3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=92.76 E-value=0.044 Score=54.83 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=38.1
Q ss_pred cCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 359 KGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 359 ~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.++|+|+||||+|. +..+.....++.+.++++|+.+||-|-.+|+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La 152 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLP 152 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGG
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 57899999999875 2335678889999999999999999998874
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=92.68 E-value=1.1 Score=48.35 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+.|+++|. +|.||=.+++.|+.+|+.+|.+|..+-.|+|
T Consensus 98 ~vI~lvG~--~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 98 FIIMLVGV--QGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp EEEEECCC--TTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 46788875 8999999999999999999999999999976
|
| >3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.049 Score=54.31 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=38.1
Q ss_pred cCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 359 KGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 359 ~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.++|+|+||||.|. +..+.....++.+.++++|+.+||-|-.+|+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La 145 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFD 145 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGT
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHH
Confidence 56899999999874 2345678889999999999999999998874
|
| >2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.24 Score=56.37 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=61.8
Q ss_pred ceEEEEEeec-CCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCC-C
Q 007533 295 PVRIAMVGKY-TGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF-G 371 (599)
Q Consensus 295 ~v~IaiVGkY-~~l~-DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGf-G 371 (599)
..||||+-.- .... .....+..+|+.+|+.+.+. .. ...+ .. | ..|.+ .....+|+|+||||. |
T Consensus 529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vV------s~-~~g~-~v--D-~t~~~--~~s~~fDAVvlPGG~~g 595 (688)
T 2iuf_A 529 GLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVV------AE-RXAN-NV--D-ETYSA--SDAVQFDAVVVADGAEG 595 (688)
T ss_dssp TCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEE------ES-SCCT-TC--C-EESTT--CCGGGCSEEEECTTCGG
T ss_pred CCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEE------ec-cCCc-cc--c-cchhc--CCccccCeEEecCCCcc
Confidence 4689988320 1111 24678999999999988652 11 1110 00 0 01111 123578999999994 4
Q ss_pred ----------------C---CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 372 ----------------N---RGVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 372 ----------------~---rg~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
. +.....+..++.+.++++|+-.||-|-++|.
T Consensus 596 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~ 646 (688)
T 2iuf_A 596 LFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALE 646 (688)
T ss_dssp GCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHH
T ss_pred cccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHH
Confidence 2 1235578899999999999999999999874
|
| >3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.1 Score=50.44 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=37.4
Q ss_pred ccCCCEEEeCCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
...+|.|+||||.|.. ..+..+..++.+.++++++.+||-|-.+|+
T Consensus 63 ~~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La 111 (211)
T 3mgk_A 63 ENIEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLS 111 (211)
T ss_dssp SSSEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHH
T ss_pred CCCCCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHH
Confidence 3457999999997653 234577888888889999999999999885
|
| >1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A | Back alignment and structure |
|---|
Probab=90.96 E-value=0.076 Score=54.22 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=38.4
Q ss_pred ccCCCEEEeCCCCCCC-c---hhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGNR-G---VQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r-g---~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
..++|+|+||||.|.. . .+.....++++.++++|+.+||-|-.+|+
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La 192 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFL 192 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHH
Confidence 4688999999998764 2 35678899999999999999999998763
|
| >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 | Back alignment and structure |
|---|
Probab=90.58 E-value=0.45 Score=54.54 Aligned_cols=103 Identities=14% Similarity=0.052 Sum_probs=61.9
Q ss_pred ceEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCCCCCCc---cccCCchhhhHHHHhccCCCEEEeCCCC
Q 007533 295 PVRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDLEDA---TEKENPDAYKAAWKLLKGADGILVPGGF 370 (599)
Q Consensus 295 ~v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~~---~~~~~p~~y~~a~~~L~~~DGIlVPGGf 370 (599)
..+|+|+ =+....+. .....++|+.+|+++.+ .......+... ....+. .+.. -....+|+|+||||.
T Consensus 534 ~rkVaIL-l~dGfe~~El~~p~dvL~~AG~~V~i----vS~~gg~V~ss~G~~v~~d~-~l~~--v~~~~yDaViVPGG~ 605 (715)
T 1sy7_A 534 SRRVAII-IADGYDNVAYDAAYAAISANQAIPLV----IGPRRSKVTAANGSTVQPHH-HLEG--FRSTMVDAIFIPGGA 605 (715)
T ss_dssp TCEEEEE-CCTTBCHHHHHHHHHHHHHTTCEEEE----EESCSSCEEBTTSCEECCSE-ETTT--CCGGGSSEEEECCCH
T ss_pred CCEEEEE-EcCCCCHHHHHHHHHHHHhcCCEEEE----EECCCCceecCCCceEeccc-cccc--CCcccCCEEEEcCCc
Confidence 4689988 35444322 45788999999876543 22211111000 000000 0100 012468999999985
Q ss_pred C-CC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 371 G-NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 371 G-~r---g~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
+ .. .....+..++.+.++++|+.+||-|-.+|+-+
T Consensus 606 ~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~A 644 (715)
T 1sy7_A 606 KAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKA 644 (715)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred ccHhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHc
Confidence 3 21 22457788899999999999999999998754
|
| >3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=90.03 E-value=2 Score=44.75 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=39.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
||.|.|++| -.|.||=.+|+.++..|..+|.||-.+-+||+-|+
T Consensus 143 ~kvIav~s~-KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l 186 (373)
T 3fkq_A 143 SSVVIFTSP-CGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTT 186 (373)
T ss_dssp CEEEEEECS-STTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCH
T ss_pred ceEEEEECC-CCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCH
Confidence 578888887 68999999999999999999999999999976554
|
| >3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.19 Score=50.29 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=59.1
Q ss_pred ceEEEEEeecCCCcch-HHHHHHHH-HHcCCcceeeeEEEEecCCCCCCc-cccCCch-hhhHHHHhccCCCEEEeCCCC
Q 007533 295 PVRIAMVGKYTGLSDA-YLSILKAL-LHASVDLRKKLVIDWIPACDLEDA-TEKENPD-AYKAAWKLLKGADGILVPGGF 370 (599)
Q Consensus 295 ~v~IaiVGkY~~l~Da-Y~SIi~AL-~haG~~~~v~v~i~wi~s~~le~~-~~~~~p~-~y~~a~~~L~~~DGIlVPGGf 370 (599)
+.+|+++ =|..+.+. .....+.| ...++++ .+.+.+...+... ...-.++ .+. +.-..+|.|+||||.
T Consensus 23 ~~~I~il-l~~gf~~~e~~~p~dvl~~~~~~~v----~~vs~~~~~V~~~~G~~i~~d~~l~---~~~~~yD~liVPGG~ 94 (253)
T 3ewn_A 23 DEQIAML-VYPGMTVMDLVGPHCMFGSLMGAKI----YIVAKSLDPVTSDAGLAIVPTATFG---TCPRDLTVLFAPGGT 94 (253)
T ss_dssp CCEEEEE-CCTTBCHHHHHHHHHHHTTSTTCEE----EEEESSSSCEECTTSCEECCSEETT---TSCSSCSEEEECCBS
T ss_pred CeEEEEE-eCCCCcHHHHHHHHHHHHhCCCCEE----EEEeCCCCeEEcCCCCEEeCCcCHH---HcCCCCCEEEECCCc
Confidence 3688888 46655433 34566777 3445433 3333322211110 0000000 011 111346999999998
Q ss_pred -CCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 371 -GNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 371 -G~r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
|.. ..+..+..++.+.++++++.+||-|-.+|+-
T Consensus 95 ~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~ 132 (253)
T 3ewn_A 95 DGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGA 132 (253)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHH
T ss_pred cchhhhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 642 3356788888888899999999999988853
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=89.44 E-value=3 Score=44.84 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
+.|.++| . +|-||=.+++.++.+|+..|.+|..+..|+|-
T Consensus 99 ~vi~i~G-~-~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 99 NLWFLVG-L-QGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp EEEEEEC-C-TTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred eEEEEEC-C-CCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 4677775 3 99999999999999999999999999999874
|
| >4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A | Back alignment and structure |
|---|
Probab=89.17 E-value=0.36 Score=45.98 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=54.0
Q ss_pred eEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCCCC---CC-c--cccCCchhhh---HHHHhccCCCEEE
Q 007533 296 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDL---ED-A--TEKENPDAYK---AAWKLLKGADGIL 365 (599)
Q Consensus 296 v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~l---e~-~--~~~~~p~~y~---~a~~~L~~~DGIl 365 (599)
+||+++ =+..+.+. .....+.|+.+|+.+.+. .+....- .. . ....+. .+. .+.....++|+|+
T Consensus 5 ~kV~il-l~dGfe~~E~~~p~~vl~~ag~~v~~~----s~~~~~~~~v~~~~g~~v~~d~-~~~~~~~~d~~~~~yD~lv 78 (194)
T 4gdh_A 5 VKVCLF-VADGTDEIEFSAPWGIFKRAEIPIDSV----YVGENKDRLVKMSRDVEMYANR-SYKEIPSADDFAKQYDIAI 78 (194)
T ss_dssp CCEEEE-EETTCCHHHHHHHHHHHHHTTCCEEEE----EESSCTTCEEECTTSCEEECSE-EGGGSCCHHHHHHHCSEEE
T ss_pred CEEEEE-ECCCcCHHHHHHHHHHHHHCCCeEEEE----EEcCCCCceEecCCCceeeccc-cHhhCCccccccccCCEEE
Confidence 467776 35555433 446678899999876432 2211110 00 0 000000 000 0112245689999
Q ss_pred eCCCCC-CC---chhHHHHHHHHHHH-cCCCEEEEehhHHHH
Q 007533 366 VPGGFG-NR---GVQGKILAAKYARE-HRIPYLGICLGMQVA 402 (599)
Q Consensus 366 VPGGfG-~r---g~eg~i~aik~are-~~iP~LGICLGmQll 402 (599)
||||.+ .. ..+..+..++.+.+ .++|+-.||-|..++
T Consensus 79 vPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 79 IPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTA 120 (194)
T ss_dssp ECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred ECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccccch
Confidence 999954 22 22445666766543 478999999997443
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.53 Score=52.12 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=33.5
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
|+|++| -.|.||-.+|++++..|..+|.+|-.+-.||.-|.
T Consensus 329 ~~~~~~-~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~l 369 (589)
T 1ihu_A 329 LIMLMG-KGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHL 369 (589)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEESCCC---
T ss_pred EEEEec-CCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcccH
Confidence 444444 57999999999999999999999999999997554
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=0.53 Score=45.45 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=36.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
+|.|.|+++ -.|.||=.+|+.++..|..+|+||-.+..||
T Consensus 2 ~~vi~v~s~-kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSG-KGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECC-CCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 478888875 5899999999999999999999999999999
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=88.90 E-value=0.51 Score=44.43 Aligned_cols=44 Identities=25% Similarity=0.250 Sum_probs=36.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTD 46 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy-ln~d 46 (599)
|+.|.++| -||-||-.+...+-..|+.+|++|..+|.||- .++|
T Consensus 6 ~~~i~i~G--~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~id 50 (174)
T 1np6_A 6 IPLLAFAA--WSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVD 50 (174)
T ss_dssp CCEEEEEC--CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----
T ss_pred ceEEEEEe--CCCCCHHHHHHHHHHhccccCCceeEEeeCCCccccC
Confidence 46788888 79999999999999999999999999999983 3555
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=88.82 E-value=0.56 Score=44.69 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=37.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+|.|.|+++ -.|.||=.+|+.++..|..+|+||-.+..||.
T Consensus 2 ~~~i~v~s~-kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 2 GRIISIVSG-KGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp CEEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred ceEEEEecC-CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 388888875 57999999999999999999999999999994
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=86.44 E-value=0.89 Score=45.15 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=38.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
||-|.|+ | =-|.||=.+|+.++..|..+|+||-.|-.||.-|
T Consensus 2 MkvIavs-~-KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~ 43 (289)
T 2afh_E 2 MRQCAIY-G-KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKAD 43 (289)
T ss_dssp CEEEEEE-E-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSC
T ss_pred ceEEEEe-C-CCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 7888887 5 8899999999999999999999999999999755
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=86.39 E-value=0.82 Score=44.57 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=38.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
||-|.|+ | =-|.||=.+|+.++..|..+|+||-.+-.||.-|
T Consensus 1 M~vI~vs-~-KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~ 42 (269)
T 1cp2_A 1 MRQVAIY-G-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD 42 (269)
T ss_dssp CEEEEEE-E-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred CcEEEEe-c-CCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Confidence 7888886 5 8899999999999999999999999999999754
|
| >1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* | Back alignment and structure |
|---|
Probab=85.79 E-value=0.44 Score=48.61 Aligned_cols=72 Identities=26% Similarity=0.233 Sum_probs=50.6
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
.+||+++++...- ...+.+.|+..|+++.+ +.+.- +.+.++|.||+-||-|+
T Consensus 29 ~mki~iv~~~~~~---~~~l~~~L~~~g~~v~~-------~~~~~----------------~~~~~~DlvIvlGGDGT-- 80 (278)
T 1z0s_A 29 GMRAAVVYKTDGH---VKRIEEALKRLEVEVEL-------FNQPS----------------EELENFDFIVSVGGDGT-- 80 (278)
T ss_dssp -CEEEEEESSSTT---HHHHHHHHHHTTCEEEE-------ESSCC----------------GGGGGSSEEEEEECHHH--
T ss_pred ceEEEEEeCCcHH---HHHHHHHHHHCCCEEEE-------ccccc----------------cccCCCCEEEEECCCHH--
Confidence 5799999875532 56788999999987633 21110 24568899999997552
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehh
Q 007533 375 VQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGICLG 398 (599)
++.+++.+... +|++||=+|
T Consensus 81 ---~L~aa~~~~~~-~PilGIN~G 100 (278)
T 1z0s_A 81 ---ILRILQKLKRC-PPIFGINTG 100 (278)
T ss_dssp ---HHHHHTTCSSC-CCEEEEECS
T ss_pred ---HHHHHHHhCCC-CcEEEECCC
Confidence 55677766555 999999887
|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=85.11 E-value=0.74 Score=47.14 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=37.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
||-|+|++| -.|.||=.+|++++..|..+|.||-.+-.||-
T Consensus 13 m~~i~v~sg-KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 13 KTTFVFIGG-KGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp BCEEEEEEE-STTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CeEEEEEeC-CCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 567778877 78999999999999999999999999999984
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=84.69 E-value=1.3 Score=45.57 Aligned_cols=44 Identities=32% Similarity=0.440 Sum_probs=39.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (599)
+|.|-|+| ==|+||=.||+.|+..|..+|+||-.|=+||+.|.-
T Consensus 48 aKVIAIaG--KGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~ 91 (314)
T 3fwy_A 48 AKVFAVYG--KGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDST 91 (314)
T ss_dssp CEEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTT
T ss_pred ceEEEEEC--CCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCccc
Confidence 47889995 669999999999999999999999999999988743
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=82.90 E-value=1.2 Score=43.43 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=37.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
||-|.|+++ -.|.||=.+|+.++..|..+|+||-.+.+||.-|
T Consensus 6 ~~vI~v~s~-kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 48 (257)
T 1wcv_1 6 VRRIALANQ-KGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGN 48 (257)
T ss_dssp CCEEEECCS-SCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred CEEEEEEeC-CCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcC
Confidence 577888764 5789999999999999999999999999999644
|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
Probab=81.49 E-value=1.5 Score=45.54 Aligned_cols=41 Identities=32% Similarity=0.536 Sum_probs=36.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
||-|+|++| -.|.||=.+|++++..|..+|.||-.+-.||-
T Consensus 25 ~~~i~v~sg-KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 25 GTKYIMFGG-KGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp SCEEEEEEC-SSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CCEEEEEeC-CCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 456777776 78999999999999999999999999999984
|
| >3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=81.48 E-value=1.5 Score=45.63 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=41.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (599)
||.|.|+++ --|.||=.+|+.++..|..+|.||-.|-+||.-|.-
T Consensus 1 MkvIav~s~-KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~ 45 (361)
T 3pg5_A 1 MRTISFFNN-KGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNAT 45 (361)
T ss_dssp CEEEEBCCS-SCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTH
T ss_pred CeEEEEEcC-CCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChh
Confidence 888999877 789999999999999999999999999999986643
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=81.00 E-value=1.1 Score=40.75 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=32.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
|++|+++|. +|-||...|..|...|...|+++..+-
T Consensus 1 M~~I~i~G~--~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 1 MKIGIVTGI--PGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp CEEEEEEEC--TTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 899999995 899999999999999999999887763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 599 | ||||
| d2vo1a1 | 273 | c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal | 1e-136 | |
| d1s1ma2 | 266 | c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal | 1e-128 | |
| d1vcoa2 | 272 | c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal | 1e-127 | |
| d1s1ma1 | 258 | c.23.16.1 (A:287-544) CTP synthase PyrG, C-termina | 1e-89 | |
| d1vcoa1 | 250 | c.23.16.1 (A:298-547) CTP synthase PyrG, C-termina | 2e-89 | |
| d1l9xa_ | 288 | c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho | 2e-16 | |
| d2abwa1 | 218 | c.23.16.1 (A:2-219) Pyridoxine biosynthesis protei | 1e-12 | |
| d1a9xb2 | 228 | c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe | 2e-04 | |
| d1ihua1 | 296 | c.37.1.10 (A:1-296) Arsenite-translocating ATPase | 0.003 |
| >d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 396 bits (1020), Expect = e-136
Identities = 180/272 (66%), Positives = 220/272 (80%), Gaps = 2/272 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQ VI+KERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD VCVIELGGT+GDIESMPFIEA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV +
Sbjct: 181 SLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRK--AHEAIFKVLNL 270
+I ++DV +I+ +PLLL + + + L+L
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDL 272
|
| >d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 376 bits (967), Expect = e-128
Identities = 136/272 (50%), Positives = 189/272 (69%), Gaps = 10/272 (3%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
Y+ VTGGVVS LGKG+ A+S+ +L+A GL VT +K+DPY+N D GTMSP +HGEVFV
Sbjct: 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFV 62
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
+DG E DLDLG+YERF+ K++R NN TTG+IY V+ KER+GDYLG TVQV+PHIT+
Sbjct: 63 TEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNA 122
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I++ + DV ++E+GGT+GDIES+PF+EA+ Q + +G + +H+
Sbjct: 123 IKERVLEGGE--------GHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHL 174
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP + GE KTKPTQHSV+ L G+ P+IL CRS A+ N + K++ FC+VPE+
Sbjct: 175 TLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKA 234
Query: 241 IITLYDVPNIWHIPLLLRKA--HEAIFKVLNL 270
+I+L DV +I+ IP LL+ + I K +L
Sbjct: 235 VISLKDVDSIYKIPGLLKSQGLDDYICKRFSL 266
|
| >d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 372 bits (957), Expect = e-127
Identities = 142/279 (50%), Positives = 193/279 (69%), Gaps = 10/279 (3%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
KYV +TGGVVS LGKG+ SS+G LL+A G RVT IKIDPY+N DAGTM P+EHGEVFV
Sbjct: 2 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFV 61
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
DG E DLD+G+YERF+D+ L+R NN+TTG++Y SVI KER+G+YL +TVQV+PHITDE
Sbjct: 62 TADGAETDLDIGHYERFLDMDLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDE 121
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I++ I +VA ++ V+E+GGT+GDIES+PF+EA+ QF + G GN +H+
Sbjct: 122 IKERIRKVAEEQKA------EIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHL 175
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP L E KTKPTQHSV LRG G+ P+IL RS + + V+ K++ F +V +
Sbjct: 176 TLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGH 235
Query: 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEP 277
+ + V +++ +PLLL A+ + L L+ P
Sbjct: 236 VFSSPTVEHLYEVPLLLEEQGLGRAVERALGLE--AVIP 272
|
| >d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 275 bits (705), Expect = 1e-89
Identities = 111/258 (43%), Positives = 148/258 (57%), Gaps = 20/258 (7%)
Query: 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 355
V I MVGKY L DAY S+++AL H + R + I I + D+E
Sbjct: 4 VTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVE-----------TRGV 52
Query: 356 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 415
++LKG D ILVPGGFG RGV+G I A++ARE+ IPYLGICLGMQVA+I++AR V N+ +
Sbjct: 53 EILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMEN 112
Query: 416 ANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ---------IKDCKSAKLYG 466
ANSTEF P+ K P V + E + +R + D +
Sbjct: 113 ANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLY 172
Query: 467 NRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEY 526
N I ERHRHRYEVN ++ ++E+AGL G+ Q +EI+E+PNHP+F+ QFHPE+
Sbjct: 173 NAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEF 232
Query: 527 KSRPGKPSPLFLGLIAAA 544
S P PLF G + AA
Sbjct: 233 TSTPRDGHPLFAGFVKAA 250
|
| >d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 274 bits (703), Expect = 2e-89
Identities = 111/254 (43%), Positives = 153/254 (60%), Gaps = 16/254 (6%)
Query: 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 355
V+IA+ GKY + DAYLS+L+AL HA + R ++ + W+ A LE
Sbjct: 4 VKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEA----------ADLE 53
Query: 356 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 415
+ + GILVPGGFG RG++GK+ AA+YARE +IPYLGICLG+Q+AVIEFAR+V L+
Sbjct: 54 EAFRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKG 113
Query: 416 ANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERH 475
ANSTEFDP+T +P + MPE + G +LYG + ERH
Sbjct: 114 ANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEE-VLERH 172
Query: 476 RHRYEVNPDMIARLEN-----AGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRP 530
RHRYEVNP + LE + + + + +E +EL +HP+F+G+Q HPE+KSRP
Sbjct: 173 RHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRP 232
Query: 531 GKPSPLFLGLIAAA 544
+PSP F+G + AA
Sbjct: 233 MRPSPPFVGFVEAA 246
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.6 bits (190), Expect = 2e-16
Identities = 34/203 (16%), Positives = 54/203 (26%), Gaps = 35/203 (17%)
Query: 347 NPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAA---------KYAREHRIPYLGICL 397
K L K +GIL PGG + A + P G CL
Sbjct: 46 LDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCL 105
Query: 398 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 457
G + + + L D + F + M FQ
Sbjct: 106 GFEELSLLISGECLLT------ATDTVDVAMPLNFTGGQLHSRM------------FQNF 147
Query: 458 DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTG--KDETSQRMEIVELPNHP 515
+ H+ V + + D + + +E +P
Sbjct: 148 PTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYP 207
Query: 516 YFIGVQFHPE-----YKSRPGKP 533
+ GVQ+HPE +K+ G
Sbjct: 208 VY-GVQWHPEKAPYEWKNLDGIS 229
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 65.3 bits (158), Expect = 1e-12
Identities = 26/184 (14%), Positives = 49/184 (26%), Gaps = 11/184 (5%)
Query: 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 417
L DG+++PG + V+ + + + L + +L+ N
Sbjct: 40 LGLCDGLVIPG-GESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVEN 98
Query: 418 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477
+ + + G S+ + T R +
Sbjct: 99 IKLYSNFGNKFSFGGLDITICRNFYG--SQNDSFICSLNIISDSSAFKKDLTAACIRAPY 156
Query: 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 537
E+ D + L G + + VE N +G FHPE F
Sbjct: 157 IREILSDEVKVLATFSHESYGPNIIA----AVEQNN---CLGTVFHPE-LLPHTAFQQYF 208
Query: 538 LGLI 541
+
Sbjct: 209 YEKV 212
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 40.6 bits (94), Expect = 2e-04
Identities = 43/266 (16%), Positives = 66/266 (24%), Gaps = 62/266 (23%)
Query: 273 TTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYT-GLSDAYLSILKALLHASVDLRKKLVI 331
TT E WT + G + + D + +L + + +
Sbjct: 11 TTAEA--YSWTQGSWTLTGGLPQAKKEDELPFHVVAYD--FGAKRNILRM--LVDRGCRL 64
Query: 332 DWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIP 391
+PA + K NPD L G I A + E IP
Sbjct: 65 TIVPAQTSAEDVLKMNPDGI------------FLSNGPGDPAPCDYAITAIQKFLETDIP 112
Query: 392 YLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451
GICLG Q+ + K +
Sbjct: 113 VFGICLGHQLLALASGAKT--------------VKMKFGHHGGNHPVKDV---------- 148
Query: 452 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVEL 511
N I ++ + A L T K ++ +
Sbjct: 149 -------------EKNVVMITAQNHGFAVDEATLPANLR-----VTHKSLFDGTLQGIHR 190
Query: 512 PNHPYFIGVQFHPEYKSRPGKPSPLF 537
+ P F Q +PE P +PLF
Sbjct: 191 TDKPAF-SFQGNPEASPGPHDAAPLF 215
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (86), Expect = 0.003
Identities = 26/167 (15%), Positives = 44/167 (26%), Gaps = 15/167 (8%)
Query: 2 KYVLVT--GGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVF 59
Y+ T GGV GK + + + L G RV + DP N +
Sbjct: 9 PYLFFTGKGGV----GKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQ- 63
Query: 60 VLDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITD 119
+ G +D + + + Q+ T
Sbjct: 64 ------AIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPD--DVVSSINEQLSGACTT 115
Query: 120 EIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQF 166
EI + E ++ D + + T I + A F
Sbjct: 116 EIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSF 162
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| d2vo1a1 | 273 | CTP synthase PyrG, N-terminal domain {Human (Homo | 100.0 | |
| d1s1ma2 | 266 | CTP synthase PyrG, N-terminal domain {Escherichia | 100.0 | |
| d1vcoa2 | 272 | CTP synthase PyrG, N-terminal domain {Thermus ther | 100.0 | |
| d1vcoa1 | 250 | CTP synthase PyrG, C-terminal domain {Thermus ther | 100.0 | |
| d1s1ma1 | 258 | CTP synthase PyrG, C-terminal domain {Escherichia | 100.0 | |
| d1a9xb2 | 228 | Carbamoyl phosphate synthetase, small subunit C-te | 99.95 | |
| d2a9va1 | 196 | GMP synthase subunit A, GuaAA {Archaeon Thermoplas | 99.94 | |
| d1wl8a1 | 188 | GMP synthase subunit A, GuaAA {Archaeon Pyrococcus | 99.93 | |
| d1i7qb_ | 192 | Anthranilate synthase GAT subunit, TrpG {Serratia | 99.9 | |
| d1gpma2 | 205 | GMP synthetase {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1qdlb_ | 195 | Anthranilate synthase GAT subunit, TrpG {Archaeon | 99.89 | |
| d1k9vf_ | 200 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.87 | |
| d1l9xa_ | 288 | gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta | 99.87 | |
| d2abwa1 | 218 | Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p | 99.86 | |
| d1jvna2 | 232 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.85 | |
| d2nv0a1 | 195 | Hypothetical protein YaaE {Bacillus subtilis [TaxI | 99.85 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 99.84 | |
| d1o1ya_ | 230 | Hypothetical protein TM1158 {Thermotoga maritima [ | 99.8 | |
| d1ka9h_ | 195 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.77 | |
| d2ghra1 | 281 | Homoserine O-succinyltransferase HTS (MetA) {Bacil | 99.33 | |
| d1t3ta2 | 262 | FGAM synthase PurL, amidotransferase domain {Salmo | 98.94 | |
| d1a9xb1 | 151 | Carbamoyl phosphate synthetase, small subunit N-te | 97.36 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 96.89 | |
| d1vhqa_ | 217 | Putative sigma cross-reacting protein 27A (SCRP-27 | 96.69 | |
| d1p80a1 | 156 | Catalase, C-terminal domain {Escherichia coli, HPI | 96.64 | |
| d1g2ia_ | 166 | Intracellular protease {Archaeon Pyrococcus horiko | 96.62 | |
| d1oi4a1 | 170 | Hypothetical protein YhbO {Escherichia coli [TaxId | 96.42 | |
| d1p5fa_ | 186 | DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | 96.25 | |
| d1sy7a1 | 184 | Catalase, C-terminal domain {Neurospora crassa [Ta | 95.88 | |
| d2ab0a1 | 195 | Protein ThiJ (YajL) {Escherichia coli [TaxId: 562] | 94.71 | |
| d1u9ca_ | 221 | GK2698 ortholog {Bacillus stearothermophilus [TaxI | 94.05 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 94.03 | |
| d2fexa1 | 188 | Hypothetical protein Atu0886 {Agrobacterium tumefa | 92.78 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.31 | |
| d1qvwa_ | 236 | Hypothetical protein Ydr533Cp {Baker's yeast (Sacc | 91.84 | |
| d1n57a_ | 279 | HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | 90.22 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 89.39 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 89.18 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 86.52 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 82.89 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 82.63 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 82.18 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 81.45 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 80.89 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 80.01 |
| >d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.2e-141 Score=1058.19 Aligned_cols=271 Identities=66% Similarity=1.116 Sum_probs=229.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||++||+|+++|+|||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 mKyifVtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEvfVt~DG~EtDlDlG~YERFl~~ 80 (273)
T d2vo1a1 1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (273)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC----------------------------------
T ss_pred CeEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccceecCCCCCCHHHHhhhheecccccccccCcchHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|+|+||+||||||++||+|||+|+|||||||||||||||||+||+++|.+|+|+++.+|||||||||||||||||+||+
T Consensus 81 ~l~~~~n~TtG~iy~~Vi~kER~G~yLGkTVQvIPHiTdeIk~~I~~~a~~~~~~~~~~~Di~IvEIGGTVGDIEs~pFl 160 (273)
T d2vo1a1 81 RLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFI 160 (273)
T ss_dssp -----CEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHSCCSSSCCCCSEEEEEECSCTTCGGGHHHH
T ss_pred CccccccccHHHHHHHHHHHHhccccccccCCcCCCHhHHHHHHHHHhhcccccccCCCCcEEEEEcCcccccchhcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|+||||||||||++++||+||||||||||+|||+|||||+|+|||+.+++++.|+||||||+|++++
T Consensus 161 EAiRQl~~e~g~~n~~~iHvtlvP~~~~~gE~KTKPTQhSVkeLrs~GIqPDilvcRse~~l~~~~k~KIslFcnV~~~~ 240 (273)
T d2vo1a1 161 EAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 240 (273)
T ss_dssp HHHHHHHHHSCGGGEEEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHTCCCSEEEEECSSCCCHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHhCCcceEEEeeccccccccchhhcccchhHHHHHHHHcCCCCCeeeeccCCCCCHHHHHHHHHhcCCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCC
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQ 271 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~ 271 (599)
||+++|++|||+||+.|+ |+++.|+++|+|+
T Consensus 241 VI~~~Dv~sIYeVPl~l~~qgl~~~i~~~L~LP 273 (273)
T d2vo1a1 241 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLP 273 (273)
T ss_dssp EEEECCCSSGGGHHHHHHHTTHHHHHHHHHTCC
T ss_pred EEEcCCcccHHHHHHHHHHCCcHHHHHHHcCCC
Confidence 999999999999999999 9999999999985
|
| >d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.4e-139 Score=1040.31 Aligned_cols=262 Identities=52% Similarity=0.906 Sum_probs=259.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 3 tkyifvtGGV~S~lGKGi~~aSig~llk~~g~~V~~~K~DPYlNvD~GtmsP~eHGEvfVt~DG~EtDlDlG~YERFl~~ 82 (266)
T d1s1ma2 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRT 82 (266)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECTTSCEECTHHHHHHHHCSS
T ss_pred ceEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccceecCCCCCCchhhceeEEeccccccccCccceeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||+||+||||||++||+|||+|+|||||||||||||||||+||.++++ ++||||||||||||||||+||+
T Consensus 83 ~l~~~~niTtGkiy~~Vi~kER~G~yLG~TVQvIPHiTdeIk~~I~~~~~--------~~Di~ivEiGGTVGDIEs~pFl 154 (266)
T d1s1ma2 83 KMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGE--------GHDVVLVEIGGTVGDIESLPFL 154 (266)
T ss_dssp CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHT--------TCSEEEEEECSCTTSSTTHHHH
T ss_pred CCcCccccchhHHHHHHHHHhhccccccCcccccCchHHHHHHHHHhcCC--------CCCEEEEeccceechhhcchHH
Confidence 99999999999999999999999999999999999999999999999874 6899999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|+||||||||||++++||+||||||||||+|||+|||||+|+|||+.+++++.|+||||||+|++++
T Consensus 155 EAiRQl~~e~g~~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLrs~GIqPDilvcRse~~l~~~~k~KIslFcnV~~~~ 234 (266)
T d1s1ma2 155 EAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKA 234 (266)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHTTTCCCSEEEEEESSCCCHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHhcCCCCEEEEeeccceeeccccccccchHHHHHHHHHhcCCCCCeEeeccccCCCHHHHHHHHhhcCCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCC
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNL 270 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l 270 (599)
||+++|+++||+||+.|+ |+++.|+++|+|
T Consensus 235 VI~~~Dv~sIYeVPl~l~~qgl~~~I~~~L~L 266 (266)
T d1s1ma2 235 VISLKDVDSIYKIPGLLKSQGLDDYICKRFSL 266 (266)
T ss_dssp EEEEECCSCGGGHHHHHHHTTHHHHHHHHTTC
T ss_pred EEEcCCCchHHHHHHHHHHCCcHHHHHHHhCC
Confidence 999999999999999999 999999999986
|
| >d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.6e-138 Score=1036.45 Aligned_cols=265 Identities=54% Similarity=0.912 Sum_probs=262.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||++||+|+++|+|||||+|||||||||||||||||||+||||||||||||||+
T Consensus 2 ~kyifvtGGV~S~lGKGi~~asig~ll~~~g~~v~~~K~DpYlNvD~Gtm~P~eHGEVfVt~DG~EtDlDlG~YERfl~~ 81 (272)
T d1vcoa2 2 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDM 81 (272)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECTTCCEECTHHHHHHHHHTS
T ss_pred ceEEEEeCCcccccccHHHHHHHHHHHHhCCCceeEEeeccceecCCCCCCchhhceEEEecccccccccccceeeccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|+|+||+||||||++||+|||+|+|||||||||||||||||+||+++|. ..++||||||||||||||||+||+
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~yLG~TVQvIPHvTdeIk~~I~~~a~------~~~~Di~ivEiGGTVGDiEs~pFl 155 (272)
T d1vcoa2 82 DLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAE------EQKAEIVVVEVGGTVGDIESLPFL 155 (272)
T ss_dssp CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCTTTHHHHHHHHHHHHHHH------HTTCSEEEEEECSCTTSSTTHHHH
T ss_pred CCcCccchhHHHHHHHHHHHHhhCCccccccccCCcchHHHHHHHHhccc------CCCCCEEEEeccceecccchhhHH
Confidence 99999999999999999999999999999999999999999999999996 568999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
|||||||+++|++|+||||||||||++++||+||||||||||+||++|||||+|+|||+.+++++.|+|||+||+|+.++
T Consensus 156 EAiRQl~~e~g~~n~~~iHvtlvP~~~~~gE~KTKPTQhSVk~Lr~~GIqPDilvcRse~~l~~~~k~KIslFcnV~~~~ 235 (272)
T d1vcoa2 156 EAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGH 235 (272)
T ss_dssp HHHHTHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHHTTCCCSEEEEEESSCCCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHhhcCCCcEEEEeeeeeeecccccccccCchhHHHHHHHhcCCCCceeeeccCCcCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCC
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQ 271 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~ 271 (599)
||+++|++|||+||+.|+ |+++.|+++|+|+
T Consensus 236 VI~~~Dv~sIYeVPl~L~~qgl~~~I~~~L~L~ 268 (272)
T d1vcoa2 236 VFSSPTVEHLYEVPLLLEEQGLGRAVERALGLE 268 (272)
T ss_dssp EEEEECCSCTTHHHHHHHHHTHHHHHHHHTTCC
T ss_pred EEEcCCcccHHHHHHHHHHCCchHHHHHHcCCC
Confidence 999999999999999999 9999999999997
|
| >d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.5e-76 Score=589.74 Aligned_cols=242 Identities=50% Similarity=0.862 Sum_probs=223.6
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
++++|||||||+++.|||+||++||+|||+++.++|++.||+++++++++ +|+.|+++||||||||||.|
T Consensus 2 k~v~IaiVGKY~~l~DaY~Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~----------~~~~L~~~dGIlvPGGFG~r 71 (250)
T d1vcoa1 2 RTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAAD----------LEEAFRDVSGILVPGGFGVR 71 (250)
T ss_dssp EEEEEEEEESCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CC----------HHHHTTTCSCEEECCCCSST
T ss_pred ceEEEEEEeCCCCCchHHHHHHHHHHHhHHhcCCeEEEEEEcchhcchhh----------HHHHHhcCCeEEecCCCCcc
Confidence 57999999999999999999999999999999999999999999997644 56889999999999999999
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCC-CcCcCCCccccCceee
Q 007533 374 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRT 452 (599)
Q Consensus 374 g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~-~~~~~GgtmrLG~~~v 452 (599)
|++|++.||+||||+++|+||||||||++++||||||+||++|+|+||++++++|||.+||++ ....+|||||||.++|
T Consensus 72 G~eGki~ai~yARen~iPfLGIClGmQ~avIEfARnvlgl~~A~s~Ef~~~~~~pvi~~~~e~~~~~~~ggtmRLG~~~~ 151 (250)
T d1vcoa1 72 GIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPM 151 (250)
T ss_dssp THHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEE
T ss_pred chHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCeEEEeeccceeccccCccccccceee
Confidence 999999999999999999999999999999999999999999999999999999999999995 5788999999999999
Q ss_pred EEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCC-----CeEEEEEeCCCCeEEEEcccCCCc
Q 007533 453 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS-----QRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 453 ~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg-----~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
.+.++ |+++++|+ +..|.|||||||||||+|++.+++.||.++|+++++ .+||++|+++||||+||||||||.
T Consensus 152 ~l~~~-S~~~~~Y~-~~~i~ERhRHRYevN~~y~~~le~~gl~~sg~~~d~~~~~~~lvEiiEl~~HPffvgvQfHPEf~ 229 (250)
T d1vcoa1 152 RIKPG-TLLHRLYG-KEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFK 229 (250)
T ss_dssp EECTT-SHHHHHHC-CSEEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGG
T ss_pred eecCC-cHHHhhcc-ccEEeehcccceeechhhhHHHHhccccccccCcccccCCCCeEEEEECCCCCcEEEecCCcccc
Confidence 99998 99999996 678999999999999999999999999999998753 479999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHhcc
Q 007533 528 SRPGKPSPLFLGLIAAACGQ 547 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~aa~~~ 547 (599)
|+|.+|||||.+||+||.++
T Consensus 230 Srp~~phPLF~~fi~Aal~~ 249 (250)
T d1vcoa1 230 SRPMRPSPPFVGFVEAALAY 249 (250)
T ss_dssp CBTTBCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHhc
Confidence 99999999999999999864
|
| >d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-75 Score=588.50 Aligned_cols=242 Identities=49% Similarity=0.827 Sum_probs=225.2
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
+++||+||||+++.|||+||++||+|||++++++|++.||+++++++.. |+.|+++|||+||||||.||
T Consensus 3 ev~Ia~vGKY~~l~DaY~Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~-----------~~~L~~~dGIlvPGGFG~RG 71 (258)
T d1s1ma1 3 EVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRG-----------VEILKGLDAILVPGGFGYRG 71 (258)
T ss_dssp EEEEEEEESSCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHC-----------TTTTTTCSEEEECCCCSSTT
T ss_pred eeEEEEEeCcCCCchhHHhHHHHHHHhHHhcCCeEEEEEEccccccccc-----------cccccccccEEeecccCcCC
Confidence 5899999999999999999999999999999999999999999885422 35799999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCC-----------cCcCCC
Q 007533 375 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-----------KTHMGG 443 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~-----------~~~~Gg 443 (599)
++|++.|++|||++++|+||||||||+|++||||||+|+++|+|+||++++++|||.+||++. ...+||
T Consensus 72 ~eGki~ai~yARen~iPfLGIClGmQ~avIE~ARnvlg~~~A~S~Ef~p~t~~pvi~~~~~~~~~~~~~~~~~~~~~~Gg 151 (258)
T d1s1ma1 72 VEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGG 151 (258)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCEEEecccccccCCceeEeecccCccc
Confidence 999999999999999999999999999999999999999999999999999999999999853 245899
Q ss_pred ccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEccc
Q 007533 444 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFH 523 (599)
Q Consensus 444 tmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFH 523 (599)
|||||.+++.+.++ |+++++|+ +..|.|||||||||||+|++.|++.||+|+|++++|.+||++|+++||||+|||||
T Consensus 152 TmrlG~~~~~l~~~-s~~~~~Y~-~~~i~ERHRHRYevN~~y~~~le~~gl~~sG~s~dg~~vEiiEl~~HPffvg~QfH 229 (258)
T d1s1ma1 152 TMRLGAQQCQLVDD-SLVRQLYN-APTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFH 229 (258)
T ss_dssp CCEEEEEEEEECTT-CHHHHHTT-SSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSC
T ss_pred cccCcccchhhhhH-HHHHHhcC-cceehhhhhcchhhhhhhhhhhhcCCceeeeecCCCCeEEEEEeCCCCeEEEecCC
Confidence 99999999999998 89999996 77899999999999999999999999999999999989999999999999999999
Q ss_pred CCCcCCCCCchHHHHHHHHHHhcchh
Q 007533 524 PEYKSRPGKPSPLFLGLIAAACGQLD 549 (599)
Q Consensus 524 PE~ss~p~~p~pLF~~Fv~aa~~~~~ 549 (599)
|||+|+|.+|||||.+|++||.++.+
T Consensus 230 PEf~Srp~~p~PLF~~Fi~Aa~~~~k 255 (258)
T d1s1ma1 230 PEFTSTPRDGHPLFAGFVKAASEFQK 255 (258)
T ss_dssp GGGTCCTTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999988654
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.4e-27 Score=232.03 Aligned_cols=187 Identities=25% Similarity=0.339 Sum_probs=138.9
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc-cCCCEEEeCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL-KGADGILVPGGFGN 372 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L-~~~DGIlVPGGfG~ 372 (599)
...+|+++ ||+ +..++++.|+..|+.+.+. +.+ .. +.+.+ .++||||++||||+
T Consensus 38 ~~~~i~~~-D~G----~k~~ilr~l~~~~~~~~v~------p~~-~~-------------~~~i~~~~pdgivlS~GPg~ 92 (228)
T d1a9xb2 38 LPFHVVAY-DFG----AKRNILRMLVDRGCRLTIV------PAQ-TS-------------AEDVLKMNPDGIFLSNGPGD 92 (228)
T ss_dssp CCEEEEEE-ESS----CCHHHHHHHHHTTEEEEEE------ETT-CC-------------HHHHHTTCCSEEEECCCSBC
T ss_pred CcceEEEE-eCC----CcHHhHhHHHhcCceEEEc------CCC-CC-------------HHHHHhcCCCEEEEeCCCCc
Confidence 35789999 698 6788999999999988552 211 10 12333 48999999999999
Q ss_pred CchhH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 007533 373 RGVQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451 (599)
Q Consensus 373 rg~eg-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~ 451 (599)
+...+ .+.+++++.+.++|+||||||||+|+.+||++|.+++. ++.|. +++
T Consensus 93 P~~~~~~~~~~~~~~~~~iPILGIClG~Qlia~~~Gg~v~k~~~-----------------------~~~G~-----~~~ 144 (228)
T d1a9xb2 93 PAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKF-----------------------GHHGG-----NHP 144 (228)
T ss_dssp STTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEEE-----------------------EEEEE-----EEE
T ss_pred cccchhHHHHHHHHHhCCCCEEEEEcChHHHHHHcCCceeeccc-----------------------ccccc-----ccc
Confidence 87654 67888998899999999999999999999999865331 23332 344
Q ss_pred eEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 452 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 452 v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
+..... .......++|+|.+....+ ..++.+++.+.++..+|+++++++|+| |||||||...+|.
T Consensus 145 ~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~~~~v~~~s~~d~~i~ai~h~~~~i~-gVQFHPE~~~t~~ 209 (228)
T d1a9xb2 145 VKDVEK----------NVVMITAQNHGFAVDEATL----PANLRVTHKSLFDGTLQGIHRTDKPAF-SFQGNPEASPGPH 209 (228)
T ss_dssp EEETTT----------TEEEEEEEEEEEEECSTTC----CTTEEEEEEETTTCCEEEEEESSSSEE-EESSCTTCSSSCS
T ss_pred cccccc----------ceeeeecccccceeccccc----ccceEEEEEecCCCcEEEEEECCCCEE-EEeCCCCCCCCcc
Confidence 443322 1111235668887765443 456778888765444999999999965 9999999999999
Q ss_pred CchHHHHHHHHHHhcch
Q 007533 532 KPSPLFLGLIAAACGQL 548 (599)
Q Consensus 532 ~p~pLF~~Fv~aa~~~~ 548 (599)
+...+|.+|++.+.+..
T Consensus 210 dg~~l~~nFl~~i~~~k 226 (228)
T d1a9xb2 210 DAAPLFDHFIELIEQYR 226 (228)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 89999999999987654
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=4.1e-26 Score=219.32 Aligned_cols=187 Identities=24% Similarity=0.387 Sum_probs=136.0
Q ss_pred eEEEEEeecCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 296 VRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY-~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
+||++|+ |+. .| .++.++|+..|+++.+ ++. +.+. ..++++||||+|||++...
T Consensus 2 ~ki~iiD-~g~---~~~~~i~r~l~~lg~~~~i------~~~-d~~~--------------~~~~~~dgiIl~Gg~~~~~ 56 (196)
T d2a9va1 2 LKIYVVD-NGG---QWTHREWRVLRELGVDTKI------VPN-DIDS--------------SELDGLDGLVLSGGAPNID 56 (196)
T ss_dssp CBEEEEE-ESC---CTTCHHHHHHHHTTCBCCE------EET-TSCG--------------GGGTTCSEEEEEEECSCGG
T ss_pred CEEEEEE-CCC---cHHHHHHHHHHHCCCeEEE------EeC-CCCH--------------HHHhcCCcEEEeccccccc
Confidence 5899995 652 33 3889999999988754 221 1111 4578999999999987743
Q ss_pred --hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceee
Q 007533 375 --VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 452 (599)
Q Consensus 375 --~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v 452 (599)
...+..+++++.++++|+||||+|||+|+.++|+.+..... .+.+ ...+
T Consensus 57 ~~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~~gg~~~~~~~-----------------------~~~~------~~~~ 107 (196)
T d2a9va1 57 EELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKH-----------------------PEFG------KTKV 107 (196)
T ss_dssp GTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEEEE-----------------------EEEE------EEEE
T ss_pred cccchhhhHHHHHhhcCceEEEeehhhhhhhhccccccccccc-----------------------cccc------cceE
Confidence 34566788888999999999999999999999887643211 1222 2334
Q ss_pred EEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCC
Q 007533 453 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK 532 (599)
Q Consensus 453 ~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~ 532 (599)
.+...+.++..+. ..+...|.|+|++. .+ +.+++++|.++++. +++++++++|+ +|+|||||...++ .
T Consensus 108 ~~~~~~~l~~~~~---~~~~~~~~H~~~v~-----~~-~~~~~v~a~~~~~~-v~ai~~~~~~i-~gvQfHPE~~~s~-~ 175 (196)
T d2a9va1 108 SVMHSENIFGGLP---SEITVWENHNDEII-----NL-PDDFTLAASSATCQ-VQGFYHKTRPI-YATQFHPEVEHTQ-Y 175 (196)
T ss_dssp EESCCCGGGTTCC---SEEEEEEEEEEEEE-----SC-CTTEEEEEECSSCS-CSEEEESSSSE-EEESSCTTSTTST-T
T ss_pred EEecCCccccCCC---CceEEEecceeEEE-----eC-CCccceeecccccc-hheEEECCCCE-EEEEeCcccCCCc-c
Confidence 4444434555443 23456788888764 23 67899999998887 99999999996 5999999987665 4
Q ss_pred chHHHHHHHHHHhcch
Q 007533 533 PSPLFLGLIAAACGQL 548 (599)
Q Consensus 533 p~pLF~~Fv~aa~~~~ 548 (599)
+..||++|++.|.+..
T Consensus 176 G~~il~~F~~~~~~~~ 191 (196)
T d2a9va1 176 GRDIFRNFIGICASYR 191 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7899999999998754
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Probab=99.90 E-value=3e-23 Score=198.94 Aligned_cols=188 Identities=16% Similarity=0.172 Sum_probs=128.5
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh--ccCCCEEEeCCCCCCCc
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGFGNRG 374 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~--L~~~DGIlVPGGfG~rg 374 (599)
+|.+|+.|.++ +| .+++.|+..|+++.+ ++. +... ....+. ..++|+|+++||||++.
T Consensus 2 niliiD~~DSF--t~-ni~~~l~~lG~~~~v------~~~-~~~~----------~~~~~~l~~~~~~~iils~Gpg~~~ 61 (192)
T d1i7qb_ 2 DILLLDNVDSF--TY-NLVDQLRASGHQVVI------YRN-QIGA----------EVIIERLQHMEQPVLMLSPGPGTPS 61 (192)
T ss_dssp EEEEEECSCSS--HH-HHHHHHHHTTCEEEE------EET-TSCH----------HHHHHHHHHCSSEEEEECCCSSCGG
T ss_pred cEEEEECCCcH--HH-HHHHHHHHCCCeEEE------EeC-CCcc----------cccHHHHHhcCCCeEEecCcccccc
Confidence 58899878754 33 789999999987644 111 1100 001122 34789999999999987
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 375 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.......++.+.+.++|+||||||||+|+.++|++|.+++. .+.|+ ...+..
T Consensus 62 ~~~~~~~i~~~l~~~iPiLGIClG~Q~la~~~Gg~v~~~~~-----------------------~~~g~-----~~~~~~ 113 (192)
T d1i7qb_ 62 EAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGE-----------------------ILHGK-----ASAIAH 113 (192)
T ss_dssp GSTTHHHHHHHHBTTBCEEEETHHHHHHHHHTTCEEEEEEE-----------------------EEEEE-----EEEEEE
T ss_pred ccccchhhHHhhhcCccEEeeeHHHHHHHHHCCCeEEECCc-----------------------ccccc-----eEEEee
Confidence 66556667788889999999999999999999998865321 22333 233333
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCch
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~ 534 (599)
... .++.... ......+.|++.+.. + +.++.+++.+. + .+++++++++|+ +|||||||...++ .+.
T Consensus 114 ~~~-~l~~~~~---~~~~~~~~h~~~~~~-----~-~~~~~~~a~~~-~-~i~ai~~~~~~i-~GvQFHPEs~~t~-~G~ 179 (192)
T d1i7qb_ 114 DGE-GMFAGMA---NPLPVARYHSLVGSN-----I-PADLTVNARFG-E-MVMAVRDDRRRV-CGFQFHPESILTT-HGA 179 (192)
T ss_dssp CCC-GGGTTCC---SSEEEEEEEEEEEES-----C-CTTSEEEEEET-T-EEEEEEETTTTE-EEESSCTTSTTST-THH
T ss_pred cCC-Cceeecc---ccceEEeeccccccc-----c-cceeeeecCCC-C-eeEEEEECCCCE-EEEEeCCCcCCCC-ChH
Confidence 322 3343332 223346678776642 2 56788888753 3 499999999995 5999999966555 478
Q ss_pred HHHHHHHHHHhc
Q 007533 535 PLFLGLIAAACG 546 (599)
Q Consensus 535 pLF~~Fv~aa~~ 546 (599)
.+|++|++-+..
T Consensus 180 ~il~nFl~~~~~ 191 (192)
T d1i7qb_ 180 RLLEQTLAWALA 191 (192)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999987754
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.1e-23 Score=202.66 Aligned_cols=193 Identities=17% Similarity=0.250 Sum_probs=124.3
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
+-||+|+ ||++. .-.+|.++|+..|+.+.+ ++.+ ... .......+|||+++||+|.+.
T Consensus 5 ~~kI~Ii-D~G~~--~~~~I~r~lr~lg~~~~I------~~~d-~~~------------~~~~~~~~~giils~gp~~~~ 62 (205)
T d1gpma2 5 KHRILIL-DFGSQ--YTQLVARRVRELGVYCEL------WAWD-VTE------------AQIRDFNPSGIILSGGPESTT 62 (205)
T ss_dssp SSEEEEE-ECSCT--THHHHHHHHHHTTCEEEE------EESC-CCH------------HHHHHHCCSEEEECCCSSCTT
T ss_pred cCeEEEE-ECCch--HHHHHHHHHHHCCCEEEE------ECCC-CCH------------HHHhhcCCCeEEecCCCCccc
Confidence 3489999 58842 224688999999998755 2221 110 002345889999999999976
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 375 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.......++.+.+.++|+||||||||+|+.++|+++...+. .+.|+ ..+..
T Consensus 63 ~~~~~~~~~~~~~~~~PiLGIClG~Qlla~~~Gg~v~~~~~-----------------------~~~G~------~~~~~ 113 (205)
T d1gpma2 63 EENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNE-----------------------REFGY------AQVEV 113 (205)
T ss_dssp STTCCCCCGGGGTSSSCEEEETHHHHHHHHHHTCEEECCSS-----------------------CEEEE------EEEEE
T ss_pred hhhhhhHHHHHHhCCCCEEEeccchhhhhhhcCCccccccc-----------------------cccCc------ceecc
Confidence 55555566777788999999999999999999998854321 11222 11121
Q ss_pred ecCCchhhhcc-----CCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCC
Q 007533 455 QIKDCKSAKLY-----GNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 455 ~~~~s~l~~iy-----g~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~ 529 (599)
.........+. +.......++.|.+++.. + +.+....+.+.++. ++++++++.|+ +|||||||++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-----~-~~~~~~~~~~~~~~-~~~~~~~~~ni-~gvQFHPE~s~s 185 (205)
T d1gpma2 114 VNDSALVRGIEDALTADGKPLLDVWMSHGDKVTA-----I-PSDFITVASTESCP-FAIMANEEKRF-YGVQFHPEVTHT 185 (205)
T ss_dssp CSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEE-----C-CTTCEEEEECSSCS-CSEEEETTTTE-EEESBCTTSTTS
T ss_pred ccccccccccccccccCCccceeeeccccccccc-----c-cccceeeeccCCCc-eEEEEeCCCCE-EEEEeecccCCC
Confidence 11111111110 111222345556554432 1 44566666665555 88999999886 599999998766
Q ss_pred CCCchHHHHHHHHHHhcc
Q 007533 530 PGKPSPLFLGLIAAACGQ 547 (599)
Q Consensus 530 p~~p~pLF~~Fv~aa~~~ 547 (599)
+ .+..+|++|++..+++
T Consensus 186 ~-~G~~il~nFl~~i~~~ 202 (205)
T d1gpma2 186 R-QGMRMLERFVRDICQC 202 (205)
T ss_dssp T-THHHHHHHHHHTTSCC
T ss_pred c-cHHHHHHHHHHHHhCC
Confidence 5 4789999999887664
|
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.89 E-value=1.3e-22 Score=193.77 Aligned_cols=186 Identities=16% Similarity=0.201 Sum_probs=117.8
Q ss_pred EEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 297 RIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
.|.+|+.|. +|. +++++|++.|+++.+ ++.++...+ + -....+|||+++||+|++..
T Consensus 3 ~~liiD~~d----sft~Ni~~~l~~lG~~~~v------i~~d~~~~~----------~--i~~~~~~gvilsgGp~~~~~ 60 (195)
T d1qdlb_ 3 LTLIIDNYD----SFVYNIAQIVGELGSYPIV------IRNDEISIK----------G--IERIDPDRLIISPGPGTPEK 60 (195)
T ss_dssp EEEEEECSC----SSHHHHHHHHHHTTCEEEE------EETTTSCHH----------H--HHHHCCSEEEECCCSSCTTS
T ss_pred EEEEEECCC----chHHHHHHHHHhCCCeEEE------EeCCCCCHH----------H--HHhhCCCccccCCCCCcccc
Confidence 478887665 543 788999999988754 222221110 0 11236899999999998754
Q ss_pred h---HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceee
Q 007533 376 Q---GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 452 (599)
Q Consensus 376 e---g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v 452 (599)
. +....+..+.+.++|+||||||||+|+.++|++|.+.+.. +.|+ ...+
T Consensus 61 ~~~~~~~~~i~~~~~~~~PiLGIClG~Qll~~~~G~~v~~~~~~-----------------------~~~~-----~~~~ 112 (195)
T d1qdlb_ 61 REDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKV-----------------------FHGK-----ISNI 112 (195)
T ss_dssp HHHHTTHHHHHHHHTTTSCEEEETHHHHHHHHHTTCEEEEEEEE-----------------------EEEE-----EEEE
T ss_pred ccccccchhhhhhhcCCCCEEEeehhhhhhhhccCCEEEeeccc-----------------------cccc-----cccc
Confidence 2 2344556667889999999999999999999988653321 1111 1111
Q ss_pred EEecC--CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCC
Q 007533 453 YFQIK--DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRP 530 (599)
Q Consensus 453 ~l~~~--~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p 530 (599)
..... .+++..+. ..+...+.|++.+... ..+....+.+.+...+++++++++|+ +|||||||.+.++
T Consensus 113 ~~~~~~~~~lf~~~~---~~~~~~~~h~~~~~~~------~~~~~~~~~~~~~~~i~ai~~~~~~i-~GvQFHPE~~~s~ 182 (195)
T d1qdlb_ 113 ILVNNSPLSLYYGIA---KEFKATRYHSLVVDEV------HRPLIVDAISAEDNEIMAIHHEEYPI-YGVQFHPESVGTS 182 (195)
T ss_dssp EECCSSCCSTTTTCC---SEEEEEEEEEEEEECC------CTTEEEEEEESSSCCEEEEEESSSSE-EEESSBTTSTTCT
T ss_pred ccccccccccccCCC---ccceeeecceeeeecc------ccCcccceeccCCCcEEEEEECCCCE-EEEEcCCCCCCCc
Confidence 11111 12333332 2344556677665321 33455555544434499999999995 5999999976554
Q ss_pred CCchHHHHHHHHH
Q 007533 531 GKPSPLFLGLIAA 543 (599)
Q Consensus 531 ~~p~pLF~~Fv~a 543 (599)
.+..+|++|+..
T Consensus 183 -~G~~il~nFl~~ 194 (195)
T d1qdlb_ 183 -LGYKILYNFLNR 194 (195)
T ss_dssp -THHHHHHHHHHH
T ss_pred -chHHHHHHHHhh
Confidence 478899999874
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=5.8e-23 Score=196.70 Aligned_cols=192 Identities=20% Similarity=0.255 Sum_probs=112.0
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCC-C-CCC-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGN- 372 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPG-G-fG~- 372 (599)
|||+|+ ||+.. ++.|+.++|+++|..+.. +.+.|.++. ....+|+||||| | |++
T Consensus 1 MKI~Ii-Dyg~g--N~~si~~al~~~g~~~~~-~~~~~~~~~-------------------~~~~~D~lIlPG~G~f~~~ 57 (200)
T d1k9vf_ 1 MRIGII-SVGPG--NIMNLYRGVKRASENFED-VSIELVESP-------------------RNDLYDLLFIPGVGHFGEG 57 (200)
T ss_dssp CEEEEE-CSSSS--CCHHHHHHHHHHTTTSSS-CEEEEESSS-------------------CSCCCSEEEECCCSCHHHH
T ss_pred CEEEEE-eCCCc--HHHHHHHHHHHhcccccc-ceEEEeCCh-------------------HhhccCeEEEcChHHHHHH
Confidence 689999 69864 689999999999987654 355555443 245789999987 3 222
Q ss_pred -Cch--hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCc
Q 007533 373 -RGV--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 449 (599)
Q Consensus 373 -rg~--eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~ 449 (599)
+.. .+.+++++.+.++++|+||||+|||+|+.+..... +..... .+ ...+. .......+|++|
T Consensus 58 ~~~l~~~~~~~~i~~~~~~~~PiLGIClG~QlL~~~~~~~~-~~~~~~--~~----~~~~~-~~~~~~~~~~~~------ 123 (200)
T d1k9vf_ 58 MRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAP-GVKGLS--LI----EGNVV-KLRSRRLPHMGW------ 123 (200)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTEEEETTST-TCCCCC--CE----EEEEE-ECSCSSCSEEEE------
T ss_pred HHhhhcccccccccccccccceEEEEecceeEEeeecccCc-cccccc--cc----ccccc-cccccccccccc------
Confidence 111 35678899999999999999999999963321110 000000 00 00000 000112233333
Q ss_pred eeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeE-EEEEeCCCCeEEEEcccCCCcC
Q 007533 450 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRM-EIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 450 ~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~v-E~iE~~~hpffvGvQFHPE~ss 528 (599)
....+... ......+++|+|.+.++.- ......+.++..+ .+++.. + ++|+|||||+++
T Consensus 124 ~~~~~~~~----------~~~~~~~~~hs~~~~~~~~-------~~~~~~~~~~~~~~a~v~~~--n-i~GvQFHPEkS~ 183 (200)
T d1k9vf_ 124 NEVIFKDT----------FPNGYYYFVHTYRAVCEEE-------HVLGTTEYDGEIFPSAVRKG--R-ILGFQFHPEKSS 183 (200)
T ss_dssp EEEEESSS----------SCCEEEEEEESEEEEECGG-------GEEEEEEETTEEEEEEEEET--T-EEEESSBGGGSH
T ss_pred cccccccc----------CCceEEEEeeeeeeccccc-------ceEEEEEECCeEEEEEEEcC--C-EEEEeCCCcccc
Confidence 11221111 1223356789988766431 1222333344433 345543 4 679999999764
Q ss_pred CCCCchHHHHHHHHHHhc
Q 007533 529 RPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 529 ~p~~p~pLF~~Fv~aa~~ 546 (599)
..+..+|++|++.+..
T Consensus 184 --~~G~~ll~nFl~~~~~ 199 (200)
T d1k9vf_ 184 --KIGRKLLEKVIECSLS 199 (200)
T ss_dssp --HHHHHHHHHHHHHHHC
T ss_pred --hhHHHHHHHHHhhhhc
Confidence 2467899999999875
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=7.4e-23 Score=207.68 Aligned_cols=193 Identities=19% Similarity=0.232 Sum_probs=112.7
Q ss_pred ceEEEEEeecCC------CcchHH--HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEe
Q 007533 295 PVRIAMVGKYTG------LSDAYL--SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILV 366 (599)
Q Consensus 295 ~v~IaiVGkY~~------l~DaY~--SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlV 366 (599)
++-|||+..... ...+|. |++++++++|+.+ .+.|.+.++ +...+.|..+||||+
T Consensus 3 kPiIGI~~~~~~~~~~~~~~~~yi~~sYvk~ie~aGa~v----vpi~~~~~~-------------~~~~~~l~~idGill 65 (288)
T d1l9xa_ 3 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARV----VPVRLDLTE-------------KDYEILFKSINGILF 65 (288)
T ss_dssp CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEE----EEECSSCCH-------------HHHHHHHHHSSEEEE
T ss_pred CCEEEEeCCcccCcccccchHHHHHHHHHHHHHHCCCEE----EEECCCCCH-------------HHHHHHHhhcCCeEe
Confidence 456888754322 122444 8899999999865 233443321 113356789999999
Q ss_pred CCCCCCCchhHH---------HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCC
Q 007533 367 PGGFGNRGVQGK---------ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS 437 (599)
Q Consensus 367 PGGfG~rg~eg~---------i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~ 437 (599)
|||+.+...... +...+.++++++|+||||+|||+|++++|+++...... +.+.. .++ ...+...
T Consensus 66 pGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~~gG~~~~~~~~---~~~~~--~~~-~~~~~~~ 139 (288)
T d1l9xa_ 66 PGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATD---TVDVA--MPL-NFTGGQL 139 (288)
T ss_dssp CCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEEE---EEEEE--ECC-EECSTTT
T ss_pred cCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHHhCCEeeccccC---cCCcc--eeE-EecCCCc
Confidence 999876543221 22334455667999999999999999999987432110 00000 000 0000000
Q ss_pred cCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhh---hhhccCCeEEEEEeCCCCe--EEEEEeC
Q 007533 438 KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMI---ARLENAGLSFTGKDETSQR--MEIVELP 512 (599)
Q Consensus 438 ~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v---~~le~~Gl~~sa~s~dg~~--vE~iE~~ 512 (599)
..++ +.. .+. .++..+.. ...+ .++|+|.|++... ..+ +.+++++|++.|+.. ++++|++
T Consensus 140 ~~~~-----~~~-----~~~-~~~~~l~~-~~~~--~~~H~~~v~~~~~~~~~~l-~~~~~v~a~s~d~~~e~I~~ie~~ 204 (288)
T d1l9xa_ 140 HSRM-----FQN-----FPT-ELLLSLAV-EPLT--ANFHKWSLSVKNFTMNEKL-KKFFNVLTTNTDGKIEFISTMEGY 204 (288)
T ss_dssp TCST-----TTT-----SCH-HHHHHHHH-SCCE--EEEEEEECBHHHHHTCHHH-HHHEEEEEEEESSSCEEEEEEEES
T ss_pred ccee-----Eee-----ccc-chhhhccC-CceE--EEecccEEEecccchhhhc-CCceEEEEEECCCCeEEEEEEEcC
Confidence 0000 000 011 33444442 3333 4558888876543 233 678999999988862 5566788
Q ss_pred CCCeEEEEcccCCC
Q 007533 513 NHPYFIGVQFHPEY 526 (599)
Q Consensus 513 ~hpffvGvQFHPE~ 526 (599)
++|+ +|||||||+
T Consensus 205 ~~pi-~GvQfHPEk 217 (288)
T d1l9xa_ 205 KYPV-YGVQWHPEK 217 (288)
T ss_dssp SSCE-EEESSCTTH
T ss_pred CCcE-EEEEcCCCC
Confidence 8896 599999994
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.86 E-value=4.4e-22 Score=192.08 Aligned_cols=204 Identities=15% Similarity=0.125 Sum_probs=108.9
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 373 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r- 373 (599)
.+||||++ ++.+|.|+.++|+++|+.. +++.|+... ++|+++||||||||....
T Consensus 2 ~ikIGvl~----l~G~~~~~~~al~~lg~~~---~~v~~~~~~------------------~~l~~~D~lIlPGgg~~~~ 56 (218)
T d2abwa1 2 EITIGVLS----LQGDFEPHINHFIKLQIPS---LNIIQVRNV------------------HDLGLCDGLVIPGGESTTV 56 (218)
T ss_dssp CEEEEEEC----TTSCCHHHHHHHHTTCCTT---EEEEEECSH------------------HHHHTCSEEEECCSCHHHH
T ss_pred CCEEEEEe----CCCcHHHHHHHHHHcCCCc---eEEEEeCCH------------------HHHhhCCEEEEcCCCccHH
Confidence 58999993 4569999999999999864 345566531 568899999999974321
Q ss_pred ------chhHHHH-HHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccc
Q 007533 374 ------GVQGKIL-AAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 446 (599)
Q Consensus 374 ------g~eg~i~-aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtmr 446 (599)
...+... +++++++.++|+||||+|||+|+.+.......-. .............. .....+....
T Consensus 57 ~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~QlL~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~ 128 (218)
T d2abwa1 57 RRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSN-----FGNKFSFGGLDITI---CRNFYGSQND 128 (218)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCT-----TGGGSCCCCEEEEE---ECCC----CC
T ss_pred HHHHHHHhccchHHHHHHHHHcCCeEEEecHHHHHHHHhccCCccccc-----cccccccccccccc---eecccCCccc
Confidence 1123333 3455667899999999999999644332221100 00000000000000 0001111000
Q ss_pred cCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCC-CeEEEEEeCCCCeEEEEcccCC
Q 007533 447 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS-QRMEIVELPNHPYFIGVQFHPE 525 (599)
Q Consensus 447 LG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg-~~vE~iE~~~hpffvGvQFHPE 525 (599)
.....+.....+..+.. .......||.|+|++.++..+.+ ..++....| ..+.+++.. +++|+|||||
T Consensus 129 ~~~~~~~~~~~~~~~~~---~~~~~~~y~~h~~~~~~~~~~~~-----a~~~~~~~g~~~i~av~~~---ni~G~QFHPE 197 (218)
T d2abwa1 129 SFICSLNIISDSSAFKK---DLTAACIRAPYIREILSDEVKVL-----ATFSHESYGPNIIAAVEQN---NCLGTVFHPE 197 (218)
T ss_dssp EEEEECEECCCCTTCCT---TCEEEEESCCEEEEECCTTCEEE-----EEEEETTTEEEEEEEEEET---TEEEESSCGG
T ss_pred ccccceeeccCCccccC---cccceeEEeeEEEEeecCChhhh-----eeeccccCCCeEEEEEecC---CEEEEEcCCe
Confidence 00111222222111111 12345678999999876543221 111222222 236666543 3789999999
Q ss_pred CcCCCCCchHHHHHHHHHHhc
Q 007533 526 YKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 526 ~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
++..+ ++++.|++.+.+
T Consensus 198 ~s~d~----r~~~~F~~~v~~ 214 (218)
T d2abwa1 198 LLPHT----AFQQYFYEKVKN 214 (218)
T ss_dssp GSSCC----HHHHHHHHHHHH
T ss_pred ecCCc----hHHHHHHHHHHh
Confidence 87543 455666666554
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=2.9e-21 Score=185.13 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=107.1
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
+||||+ +|. .++.|++++|+.+|+++.. +... +.|+++|+||||||+.+..
T Consensus 2 ~~igv~-~~~---G~~~~~~~al~~~G~~~~~------i~~~------------------~~l~~~D~lIlPGG~~~~~~ 53 (195)
T d2nv0a1 2 LTIGVL-GLQ---GAVREHIHAIEACGAAGLV------VKRP------------------EQLNEVDGLILPGGESTTMR 53 (195)
T ss_dssp CEEEEE-CSS---SCCHHHHHHHHHTTCEEEE------ECSG------------------GGGGGCSEEEECCSCHHHHH
T ss_pred cEEEEE-ecC---ChHHHHHHHHHHCCCcEEE------ECCH------------------HHHhhCCEEEECCCCccHHH
Confidence 589999 562 3779999999999987633 3321 4688999999999865432
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc---ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcccc
Q 007533 375 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV---LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 447 (599)
Q Consensus 375 ----~eg~i~aik~are~~iP~LGICLGmQll~iefgr~V---lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrL 447 (599)
..+...+++.+.++++|+||||+|||+|+-++++.. +++.+... ...+.++....
T Consensus 54 ~~~~~~~~~~~I~~~~~~g~pilGIC~G~Qll~~~~~g~~~~~lg~~~~~~------------------~~~~~~~~~~~ 115 (195)
T d2nv0a1 54 RLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVV------------------ERNSFGRQVDS 115 (195)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBCCC----CCCCCSCEEE------------------ECCCSCTTTSE
T ss_pred HHhhhchhcchhhhhhhhcceeeeccccHHHHHhhhccccccccccccccc------------------cccccccccee
Confidence 134567889999999999999999999965544321 11111100 00111221111
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
.... ..+..+- ..... .+++|.|.. .+ +.++.+++... +. +.+++.. .++|+|||||++
T Consensus 116 ~~~~-------~~~~~~~-~~~~~-~~~h~~~~~------~~-~~~~~vla~~~-~~-~~a~~~~---ni~g~QFHPE~s 174 (195)
T d2nv0a1 116 FEAD-------LTIKGLD-EPFTG-VFIRAPHIL------EA-GENVEVLSEHN-GR-IVAAKQG---QFLGCSFHPELT 174 (195)
T ss_dssp EEEE-------ECCTTCS-SCEEE-EEESCCEEE------EE-CTTCEEEEEET-TE-EEEEEET---TEEEESSCTTSS
T ss_pred eeee-------ecccCCC-CCceE-EEEeeeEEE------ec-CCCceeeeeEC-CE-EEEEEEC---CEEEEEeCCccc
Confidence 1111 1222222 12222 233343322 22 45667777654 33 4566653 368999999988
Q ss_pred CCCCCchHHHHHHHHHHhcchh
Q 007533 528 SRPGKPSPLFLGLIAAACGQLD 549 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~aa~~~~~ 549 (599)
+.. .+++.|++.+.+..+
T Consensus 175 ~~~----~~~~~F~~~~~~~k~ 192 (195)
T d2nv0a1 175 EDH----RVTQLFVEMVEEYKQ 192 (195)
T ss_dssp SCC----HHHHHHHHHHHHHHH
T ss_pred CCc----HHHHHHHHHHHHHHH
Confidence 753 566777777665443
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.84 E-value=3e-21 Score=185.82 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=65.0
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
..+||||+ +|. .++.|+.++|+.+|+++.+ ++. | +.|.++||||+|||+.+.
T Consensus 5 ~~mkIgii-~~~---Gn~~s~~~al~~~G~~~~~------v~~-----------~-------~~l~~~D~lIlPGG~~~~ 56 (202)
T d1q7ra_ 5 SNMKIGVL-GLQ---GAVREHVRAIEACGAEAVI------VKK-----------S-------EQLEGLDGLVLPGGESTT 56 (202)
T ss_dssp CCCEEEEE-SCG---GGCHHHHHHHHHTTCEEEE------ECS-----------G-------GGGTTCSEEEECCCCHHH
T ss_pred cCCEEEEE-ECC---CCHHHHHHHHHHCCCcEEE------ECC-----------H-------HHHhcCCEEEECCCCcHH
Confidence 46999999 572 3789999999999997644 221 1 468899999999987543
Q ss_pred ch-----hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 374 GV-----QGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 374 g~-----eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.. .+...+|+.+.++++|+||||+|||+|+
T Consensus 57 ~~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Qll~ 91 (202)
T d1q7ra_ 57 MRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLA 91 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHE
T ss_pred HHHHhhhhHHHHHHhhhccccceeeeeehhhHHhh
Confidence 32 3456789999999999999999999985
|
| >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein TM1158 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=3e-19 Score=175.78 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=120.4
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
+.|||.++ ...+..| --++.+.|+..|+++.+ ++...-+. -| +.+.++||||++||+.+.
T Consensus 2 ~~mrvli~-qh~~~e~-~G~~~~~l~~~g~~~~~------~~~~~~~~-----~p-------~~l~~~d~iii~Ggp~~~ 61 (230)
T d1o1ya_ 2 HHVRVLAI-RHVEIED-LGMMEDIFREKNWSFDY------LDTPKGEK-----LE-------RPLEEYSLVVLLGGYMGA 61 (230)
T ss_dssp CCCEEEEE-CSSTTSS-CTHHHHHHHHTTCEEEE------ECGGGTCC-----CS-------SCGGGCSEEEECCCSCCT
T ss_pred CceEEEEE-ECCCCCC-cHHHHHHHHHCCCEEEE------EECCCCCc-----CC-------cchhhCCEEEEcCCCccc
Confidence 45899998 4443322 23567788888887643 32211110 01 347789999999997653
Q ss_pred -------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccc
Q 007533 374 -------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 446 (599)
Q Consensus 374 -------g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtmr 446 (599)
........++.+.++++|+||||+|||+|+.++|++|...++. ++
T Consensus 62 ~d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~alGg~V~~~~~~----------------------~~------ 113 (230)
T d1o1ya_ 62 YEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNG----------------------EE------ 113 (230)
T ss_dssp TCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTC----------------------CE------
T ss_pred ccchhhhhhHHHHHHHHHHHHhcceEEEeecCHHHHHHHhcccccccccc----------------------cc------
Confidence 2345678899999999999999999999999999998542210 11
Q ss_pred cCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCC
Q 007533 447 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEY 526 (599)
Q Consensus 447 LG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ 526 (599)
.|.+.+....++.++..+. +. ....|.|++.+ .+ +.+.++++.++++. +++++.. + ++|+|||||+
T Consensus 114 ~~~~~~~~~~~~~l~~~~~-~~--~~~~~~H~d~~------~l-p~~~~~la~s~~~~-~qa~~~~--~-~~g~QfHPE~ 179 (230)
T d1o1ya_ 114 IGWYFVEKVSDNKFFREFP-DR--LRVFQWHGDTF------DL-PRRATRVFTSEKYE-NQGFVYG--K-AVGLQFHIEV 179 (230)
T ss_dssp EEEEEEEECCCCGGGTTSC-SE--EEEEEEESEEE------CC-CTTCEEEEECSSCS-CSEEEET--T-EEEESSBSSC
T ss_pred ccccccccccchhhhccCC-cc--ceEEEecceee------ee-ccchhhhhhhcCCc-eEEEEec--C-EeEEEeCCCC
Confidence 1233344444434555543 23 33455565432 23 67889999988776 8899885 3 5799999998
Q ss_pred cCCCCCchHHHHHHHHHHhc
Q 007533 527 KSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 527 ss~p~~p~pLF~~Fv~aa~~ 546 (599)
+. ..+.+|++....
T Consensus 180 ~~------~~~~~~i~~~~~ 193 (230)
T d1o1ya_ 180 GA------RTMKRWIEAYKD 193 (230)
T ss_dssp CH------HHHHHHHHHTHH
T ss_pred CH------HHHHHHHHHhHH
Confidence 53 467777766544
|
| >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=1.9e-18 Score=161.99 Aligned_cols=81 Identities=28% Similarity=0.376 Sum_probs=62.9
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC--
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-- 373 (599)
|||+|+ ||+.. +..|+.++|+..|+.+.+ +. +. +.++++|++++|||....
T Consensus 1 Mki~Ii-D~G~g--N~~si~~~l~~lg~~~~i------~~--~~----------------~~i~~~d~lIlpG~g~~~~~ 53 (195)
T d1ka9h_ 1 MKALLI-DYGSG--NLRSAAKALEAAGFSVAV------AQ--DP----------------KAHEEADLLVLPGQGHFGQV 53 (195)
T ss_dssp CEEEEE-CSSCS--CHHHHHHHHHHTTCEEEE------ES--ST----------------TSCSSCSEEEECCCSCHHHH
T ss_pred CEEEEE-eCCCc--HHHHHHHHHHHCCCeEEE------EC--CH----------------HHHHHHhhhhcCCCccccch
Confidence 689999 69865 788999999999988754 21 11 357889999999975431
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 374 ----GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 374 ----g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
...+....+....+.++|+||||+|||+++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~g~pilGiClG~qll~ 87 (195)
T d1ka9h_ 54 MRAFQESGFVERVRRHLERGLPFLGICVGMQVLY 87 (195)
T ss_dssp HHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTS
T ss_pred hhhccccCCcccccccccccchhhhhhhhhheee
Confidence 123456778888889999999999999985
|
| >d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: HTS-like domain: Homoserine O-succinyltransferase HTS (MetA) species: Bacillus cereus [TaxId: 1396]
Probab=99.33 E-value=8.7e-12 Score=125.68 Aligned_cols=146 Identities=14% Similarity=0.080 Sum_probs=96.7
Q ss_pred ccCCCEEEeCCCCCCC-------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCee
Q 007533 358 LKGADGILVPGGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 430 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r-------g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi 430 (599)
..++||+||+|++-.. .++.+.+.++|++++++|+||||+|+|+++.++++.+-...
T Consensus 81 ~~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~~---------------- 144 (281)
T d2ghra1 81 NEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPL---------------- 144 (281)
T ss_dssp TCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEE----------------
T ss_pred cccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCccccC----------------
Confidence 3679999999987442 35778899999999999999999999999999987542100
Q ss_pred eeCCCCCcCcCCCccccCceeeEEe-cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEE
Q 007533 431 IFMPEGSKTHMGGTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIV 509 (599)
Q Consensus 431 ~~mpe~~~~~~GgtmrLG~~~v~l~-~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~i 509 (599)
+ ++ ..|..+..+. +.+.++.++ .+.+..-|.|--+++.+.+.. .+++.+++.+++.. +.++
T Consensus 145 ---~-------~k--~~Gv~~~~~~~~~~pL~~g~---~d~f~~p~Sr~~~~~~d~v~~--~p~l~vLa~S~~~g-~~~~ 206 (281)
T d2ghra1 145 ---K-------EK--MFGVFEHEVREQHVKLLQGF---DELFFAPHSRHTEVRESDIRE--VKELTLLANSEEAG-VHLV 206 (281)
T ss_dssp ---E-------EE--EEEEEEEEECCSSCGGGTTC---CSEEEEEEEEEEECCHHHHHT--CTTEEEEEEETTTE-EEEE
T ss_pred ---C-------Cc--eEEEEEEeeccCCChhccCC---cchhheeeeecccCCHHHHhh--CCCceEEeecCCcc-cEEE
Confidence 0 00 1223333322 332445444 223444565545666565544 56888888887765 7777
Q ss_pred EeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 510 ELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 510 E~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
..++.+ ++++|+||||... -|-..+.+.
T Consensus 207 ~~~~~~-~~~iQgHPEYd~~-----tL~~EY~RD 234 (281)
T d2ghra1 207 IGQEGR-QVFALGHSEYSCD-----TLKQEYERD 234 (281)
T ss_dssp EEGGGT-EEEECSCTTCCTT-----HHHHHHHHH
T ss_pred EECCCC-EEEEeCCCCcchh-----HHHHHHHHH
Confidence 777776 4699999999754 344444443
|
| >d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: FGAM synthase PurL, amidotransferase domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.94 E-value=4.3e-09 Score=104.68 Aligned_cols=194 Identities=20% Similarity=0.213 Sum_probs=108.4
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC-
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN- 372 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~- 372 (599)
+++||||+ .+-. ...-.....||+.+|+++.. .|+. ++.... ..|+++|+|++||||+.
T Consensus 5 ~kpkvaVl-~~pG-tNcd~e~~~Af~~aG~~~~~----v~~~--dl~~~~------------~~L~~~~~lvipGGFSyg 64 (262)
T d1t3ta2 5 ARPKVAVL-REQG-VNSHVEMAAAFHRAGFDAID----VHMS--DLLGGR------------IGLGNFHALVACGGFSYG 64 (262)
T ss_dssp CCCEEEEE-ECTT-BCCHHHHHHHHHHTTCEEEE----EEHH--HHHHTS------------CCGGGCSEEEECCBCGGG
T ss_pred CCCeEEEE-eCCC-CCcHHHHHHHHHHcCCceEE----EEee--ecccCc------------ccccccceEEEecccccc
Confidence 45799999 4432 33667788999999998643 3443 221100 25889999999999744
Q ss_pred -CchhH------------HHHHHHH-HHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCc
Q 007533 373 -RGVQG------------KILAAKY-AREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 438 (599)
Q Consensus 373 -rg~eg------------~i~aik~-are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~ 438 (599)
.--.| ...++.. +.+.+.|+||||-|+|+|+ +++. +.... +. .+. ++..
T Consensus 65 D~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~-elg~----l~pg~--~~-----~~~--~~~N--- 127 (262)
T d1t3ta2 65 DVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMS-NLRE----LIPGS--EL-----WPR--FVRN--- 127 (262)
T ss_dssp GTTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHH-TTGG----GSTTC--TT-----CCE--EECC---
T ss_pred ccccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHHHHH-Hhcc----cCCCc--cc-----Ccc--cccc---
Confidence 31111 1112222 2245799999999999994 4321 11110 00 000 0000
Q ss_pred CcCCCccccCce--eeEEecCCch-hhhccCCceeEEeeeeee-eeeC-chhhhhhccCCeEEEEE-------------e
Q 007533 439 THMGGTMRLGSR--RTYFQIKDCK-SAKLYGNRTFIDERHRHR-YEVN-PDMIARLENAGLSFTGK-------------D 500 (599)
Q Consensus 439 ~~~GgtmrLG~~--~v~l~~~~s~-l~~iyg~~~~I~erHrHr-YeVn-p~~v~~le~~Gl~~sa~-------------s 500 (599)
.-+ |+-.+ .+.+...++. ++.+-+..-.+...|.+. |.+. ++.+++|++.+..+.-+ +
T Consensus 128 --~s~--rfe~rw~~~~v~~~~s~~~~~~~g~~l~ipiaHgEG~f~~~~~~~l~~L~~~~~ia~~Y~d~~g~~~~~yp~N 203 (262)
T d1t3ta2 128 --HSD--RFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPAN 203 (262)
T ss_dssp --TTS--SCEEEEEEEEECCCSCGGGTTCTTCEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTS
T ss_pred --cCC--eEEEEEeeeccccccChhhccCCCcceEeeeecCCCCcccCCHHHHHHhhhccceEEEEEcCCCccccccCCC
Confidence 000 11111 1222222233 344433233455566554 4443 44678888888877665 3
Q ss_pred CCCCe--EEEEEeCCCCeEEEEcccCCCcCC
Q 007533 501 ETSQR--MEIVELPNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 501 ~dg~~--vE~iE~~~hpffvGvQFHPE~ss~ 529 (599)
++|.. |.+|-.++.. ++|...|||..-.
T Consensus 204 PNGS~~~IAGIcs~~Gr-vlgmMPHPER~~~ 233 (262)
T d1t3ta2 204 PNGSPNGITAVTTENGR-VTIMMPHPERVFR 233 (262)
T ss_dssp SSCCGGGEEEEECTTSS-EEEESSBGGGSSB
T ss_pred CCCCccceeEEECCCCC-EEEEcCChhHhhh
Confidence 45553 8899989888 5699999997544
|
| >d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: Carbamoyl phosphate synthetase, small subunit N-terminal domain family: Carbamoyl phosphate synthetase, small subunit N-terminal domain domain: Carbamoyl phosphate synthetase, small subunit N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=5.8e-06 Score=75.28 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=66.2
Q ss_pred EEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHH
Q 007533 177 LIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLL 256 (599)
Q Consensus 177 ~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~ 256 (599)
.|-+---|.|...|= .-.+.+|.+++..++|||+....++|||++.+|..|+..++|+++.+||||+ +.+.
T Consensus 50 Qii~fT~P~IGNyG~--------n~~d~ES~~~~~~GlIV~e~~~~pSn~rs~~sL~~~L~~~~IpgI~gIDTRa-Ltr~ 120 (151)
T d1a9xb1 50 QIVTLTYPHIGNVGT--------NDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRK-LTRL 120 (151)
T ss_dssp EEEEECSSBCCTTCC--------CGGGCSSSSCCBSEEECSBCCSCCCCTTCCSCHHHHHHHTTCEEEESSCHHH-HHHH
T ss_pred ceEEeeehhcccccC--------CccchhhccccccchhccCccccCCcccccCCHHHHHHHcCCccccccCHHH-HHHH
Confidence 344445677766562 2368999999999999999999999999999999999999999999999996 6678
Q ss_pred HH--HHHHHH
Q 007533 257 LR--KAHEAI 264 (599)
Q Consensus 257 L~--g~~~~i 264 (599)
|| |.++++
T Consensus 121 iR~~G~~~g~ 130 (151)
T d1a9xb1 121 LREKGAQNGC 130 (151)
T ss_dssp HHHHCCEEEE
T ss_pred HHhcCCceEE
Confidence 88 777654
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00025 Score=64.68 Aligned_cols=194 Identities=14% Similarity=0.041 Sum_probs=105.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
.|-+|||| .=+|+||=.+++.|++.|.++|+||-.+|-||.-|...........-..+....+.+.+. ....
T Consensus 1 ~~~~~i~g-t~~GVGKTtvs~~La~aLa~~G~rVl~id~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~- 72 (224)
T d1byia_ 1 SKRYFVTG-TDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDY------ATVN- 72 (224)
T ss_dssp CEEEEEEE-SSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTCSSCCCH------HHHC-
T ss_pred CceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEECccccCCCCCCCCcchhHHHHHHHhhccCccc------cccc-
Confidence 37788886 446999999999999999999999999999998766554433322211111111111111 1111
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
........ ... ....+ .-.+.-...+.+..+..+ ..+|++++|-.+.+.+.....
T Consensus 73 ~~~~~~~~-~~~----~~~~~----------~~~~~~~~~~~~~~~~~~--------~~~d~~~~~~~~~~~~~~~~~-- 127 (224)
T d1byia_ 73 PYTFAEPT-SPH----IISAQ----------EGRPIESLVMSAGLRALE--------QQADWVLVEGAGGWFTPLSDT-- 127 (224)
T ss_dssp SEEESSCS-CHH----HHHHH----------HTCCCCHHHHHHHHHHHH--------TTCSEEEEECSSSTTCEEETT--
T ss_pred ccccccch-hhh----hhhhh----------hhhhhhHHHHHHHHhhhh--------hccceEeeccccccccccccc--
Confidence 11111111 111 01111 111233445666666664 367999999887776644333
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEec---CCCCChhhhhccccCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRS---TVALDDNVKGKLSQFCHV 236 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~---~~~l~~~~~~Kislfc~v 236 (599)
.+..++..... ..+.. |.. .+..-.-.++-+++.++..|+...++|+-. ..+...+..+.+.-++.+
T Consensus 128 ~~~~~~~~~~~-~~v~~-----V~~---~~~~~~~~~~~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~gi 197 (224)
T d1byia_ 128 FTFADWVTQEQ-LPVIL-----VVG---VKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPA 197 (224)
T ss_dssp EEHHHHHHHHT-CCEEE-----EEE---CSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSS
T ss_pred chhhccccccc-ceeeE-----EEe---eccchhHHHHHHHHHHhccCCccEEEEEeCcCCCchHHHHHHHHHHHHhCC
Confidence 12233333333 12222 221 233344456677788889999999988753 334444555555555544
|
| >d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00096 Score=63.48 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=39.6
Q ss_pred ccCCCEEEeCCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 358 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r--------------g~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
..++|+|++|||+|.. -.+....+++.+.++++|+-.||-|-++++-.
T Consensus 83 ~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~ 144 (217)
T d1vhqa_ 83 AAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI 144 (217)
T ss_dssp GGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH
T ss_pred HhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 3689999999998741 12457789999999999999999999998643
|
| >d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Escherichia coli, HPII [TaxId: 562]
Probab=96.64 E-value=0.00074 Score=60.40 Aligned_cols=102 Identities=15% Similarity=0.053 Sum_probs=62.7
Q ss_pred ceEEEEEeecCCCcc-hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCcc-ccCCc-hhhhHHHHhccCCCEEEeCCCCC
Q 007533 295 PVRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-EKENP-DAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 295 ~v~IaiVGkY~~l~D-aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~-~~~~p-~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
..||||+ =+....+ ......++|+.+|+.+.+ .+.....+.... ..-.+ ..|.. .....+|+|+||||.+
T Consensus 3 grkVaiL-v~dg~~~~e~~~~~~~l~~ag~~v~~----v~~~~~~v~~~~G~~i~~d~t~~~--~~~~~yDaliiPGG~~ 75 (156)
T d1p80a1 3 GRVVAIL-LNDEVRSADLLAILKALKAKGVHAKL----LYSRMGEVTADDGTVLPIAATFAG--APSLTVDAVIVPCGNI 75 (156)
T ss_dssp TCEEEEE-CCTTCCHHHHHHHHHHHHHHTCEEEE----EESSSSEEECTTSCEEECCEETTT--SCGGGCSEEEECCSCT
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHCCCEEEE----EecccccccccceeEEeeeeeecc--CCcccCCEEEeeCCch
Confidence 4588888 3555543 366899999999987643 222211111000 00000 01111 1134789999999965
Q ss_pred CC--chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 372 NR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 372 ~r--g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.. .....+..++.+-++++|+..||-|.++|+
T Consensus 76 ~~l~~~~~~~~~i~e~~~~~K~I~aic~g~~~La 109 (156)
T d1p80a1 76 ADIADNGDANYYLMEAYKHLKPIALAGDARKFKA 109 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHTTCCEEEEGGGGGGGG
T ss_pred HHHhcchHHHHHHHHHHHcCCeEEEECchHHHHH
Confidence 42 224467788888889999999999999984
|
| >d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Intracellular protease species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.62 E-value=0.0014 Score=58.86 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=62.6
Q ss_pred eEEEEEeecCCCcch-HHHHHHHHHHcCCcceeee-EEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 296 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKL-VIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 296 v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v-~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
|||+++ =|..+.+. +....+.|+.+|+++.+.- .-.-|.+.. ......+. .+.+ -...++|+|++|||.+..
T Consensus 1 mKv~il-~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~~~--g~~i~~d~-~~~~--~~~~~~d~viipGg~~~~ 74 (166)
T d1g2ia_ 1 MKVLFL-TANEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKH--GYSVKVDL-TFDK--VNPEEFDALVLPGGRAPE 74 (166)
T ss_dssp CEEEEE-CCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTT--SCEEEECE-EGGG--CCGGGCSEEEECCBSHHH
T ss_pred CEEEEE-eCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEeecC--CcEEeccc-cHHH--cCcccccEEEEecccchh
Confidence 578877 36655544 4456788999998764310 000111110 00000000 0110 013578999999997653
Q ss_pred ---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 374 ---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 374 ---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 75 ~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~ 108 (166)
T d1g2ia_ 75 RVRLNEKAVSIARKMFSEGKPVASICHGPQILIS 108 (166)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCEEEETTTTHHHHH
T ss_pred hhccChHHHHHHHHHHhcCCeeeeccccchhhhh
Confidence 2356788899999999999999999999864
|
| >d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein YhbO species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.0042 Score=56.06 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=62.7
Q ss_pred EEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEE---ecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 297 RIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDW---IPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 297 ~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~w---i~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
||||+- +..+.+. +....+.|+.+|+++.+. ...+ +..+.-. .....+. .+.+ -...++|+|++|||+|.
T Consensus 3 kIail~-~dgf~~~E~~~~~~~l~~ag~~v~~v-s~~~~~~v~~~~~~-~~v~~d~-~l~~--~~~~~yDalivpGG~~~ 76 (170)
T d1oi4a1 3 KIAVLI-TDEFEDSEFTSPADEFRKAGHEVITI-EKQAGKTVKGKKGE-ASVTIDK-SIDE--VTPAEFDALLLPGGHSP 76 (170)
T ss_dssp EEEEEC-CTTBCTHHHHHHHHHHHHTTCEEEEE-ESSTTCEEECTTSS-CEEECCE-EGGG--CCGGGCSEEEECCBTHH
T ss_pred EEEEEe-CCCcCHHHHHHHHHHHHHCCCEEEec-cCCCCceeeeeccC-eEEecCC-cHHH--CChhhceEEEEccchhh
Confidence 688773 6555544 556788999999876431 1100 1111000 0000010 1111 01457899999999765
Q ss_pred C---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 373 R---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 373 r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
. ..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 77 ~~l~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~ 111 (170)
T d1oi4a1 77 DYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLIS 111 (170)
T ss_dssp HHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHH
T ss_pred hhhccChHHHHHHHHHhhcCCeeeecccchHHHhh
Confidence 3 3356778899989999999999999999953
|
| >d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: DJ-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0056 Score=55.76 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=61.9
Q ss_pred EEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCCC-CCC-ccccCCch-hhhHHHHhccCCCEEEeCCCCCC
Q 007533 297 RIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACD-LED-ATEKENPD-AYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 297 ~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~-le~-~~~~~~p~-~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
||+|+ =|..+.+. +......|+.+|+++.+. ..+..+ +.. ....-.|+ .+.++. ...++|+|+||||++.
T Consensus 3 kvlvl-l~~Gfe~~E~~~p~~~l~~ag~~v~~~----s~~~~~~v~~~~g~~i~~d~~l~d~~-~~~~~D~liipGG~~~ 76 (186)
T d1p5fa_ 3 RALVI-LAKGAEEMETVIPVDVMRRAGIKVTVA----GLAGKDPVQCSRDVVICPDASLEDAK-KEGPYDVVVLPGGNLG 76 (186)
T ss_dssp EEEEE-ECTTCCHHHHHHHHHHHHHTTCEEEEE----ETTCSSCEECTTSCEECCSEEHHHHH-HTCCCSEEEECCCHHH
T ss_pred EEEEE-eCCCCCHHHHHHHHHHHHHCCCEEEEE----EecCCcceecCCCccccCccchhccC-CcccccEEEEecCccc
Confidence 66666 35555433 457889999999876441 111111 110 01101111 111111 2357999999999753
Q ss_pred C----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 373 R----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 373 r----g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
. ..+.....++.+.++++|+.+||-|-.+|+-
T Consensus 77 ~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~ 112 (186)
T d1p5fa_ 77 AQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA 112 (186)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHH
T ss_pred cccccchHHHHHHHHHhhccccceeecccCcchhhh
Confidence 2 2245677888889999999999999999963
|
| >d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Neurospora crassa [TaxId: 5141]
Probab=95.88 E-value=0.0044 Score=55.95 Aligned_cols=103 Identities=14% Similarity=0.049 Sum_probs=62.7
Q ss_pred ceEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCCCCCCc---cccCCchhhhHHHHhccCCCEEEeCCCC
Q 007533 295 PVRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDLEDA---TEKENPDAYKAAWKLLKGADGILVPGGF 370 (599)
Q Consensus 295 ~v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~~---~~~~~p~~y~~a~~~L~~~DGIlVPGGf 370 (599)
+-||+++ =|..+.+. .....+.|+.+|+++.+ ...+...+... ....+. .+.+ ....++|++++|||.
T Consensus 3 ~rkI~il-v~dG~~~~e~~~~~~~l~~ag~~v~i----vs~~~~~v~~~~g~~v~~d~-~~~~--~~~~~~dalivpgg~ 74 (184)
T d1sy7a1 3 SRRVAII-IADGYDNVAYDAAYAAISANQAIPLV----IGPRRSKVTAANGSTVQPHH-HLEG--FRSTMVDAIFIPGGA 74 (184)
T ss_dssp TCEEEEE-CCTTBCHHHHHHHHHHHHHTTCEEEE----EESCSSCEEBTTSCEECCSE-ETTT--CCGGGSSEEEECCCH
T ss_pred ccEEEEE-ecCCCcHHHHHHHHHHHHHCCCEEEE----EEecCCcccccccccccccc-cccc--cccccceEEEEeecc
Confidence 4588888 36555432 55788999999987643 11111111000 000000 0100 123478999999986
Q ss_pred CCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 371 GNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 371 G~r----g~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
+.. .....+..++.+.++++|+.+||-|-++|+-+
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~a 113 (184)
T d1sy7a1 75 KAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKA 113 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred ccccccccccchhHHHHHHHhcCCceEEechHHHHHHHc
Confidence 542 22456778888999999999999999999653
|
| >d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Protein ThiJ (YajL) species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.014 Score=53.80 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=55.4
Q ss_pred cCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCCCC---CCc-cccCCch-hhhHHHHhccCCCEEEeCCCCCCC----
Q 007533 304 YTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDL---EDA-TEKENPD-AYKAAWKLLKGADGILVPGGFGNR---- 373 (599)
Q Consensus 304 Y~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~l---e~~-~~~~~p~-~y~~a~~~L~~~DGIlVPGGfG~r---- 373 (599)
|..+.+. ....+..|+++|+++.+. -+.++.- ... ...-.|+ .+.+ -...++|+|++|||++..
T Consensus 9 ~~Gfe~~E~~~p~d~L~rag~~v~~~----s~~~~~~~~v~~~~G~~v~~d~~~~d--~~~~d~D~liiPGG~~~~~~l~ 82 (195)
T d2ab0a1 9 APGSEETEAVTTIDLLVRGGIKVTTA----SVASDGNLAITCSRGVKLLADAPLVE--VADGEYDVIVLPGGIKGAECFR 82 (195)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEE----ECSSTTCCEEECTTSCEEECSEEHHH--HTTSCCSEEEECCCHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHCCCEEEEE----EEcCCCCceEEeCCCcEeecCcChHH--cCcccceEEEEccccCcccccc
Confidence 5555444 356788899999876431 2222210 000 0000010 1111 125789999999997542
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehh-HHHH
Q 007533 374 GVQGKILAAKYAREHRIPYLGICLG-MQVA 402 (599)
Q Consensus 374 g~eg~i~aik~are~~iP~LGICLG-mQll 402 (599)
..+..+..+|.+.++++|+.+||-| ..+|
T Consensus 83 ~~~~l~~~lr~~~~~gk~i~aiC~g~a~lL 112 (195)
T d2ab0a1 83 DSTLLVETVKQFHRSGRIVAAICAAPATVL 112 (195)
T ss_dssp HCHHHHHHHHHHHHTTCEEEEETHHHHHHT
T ss_pred ccHHHHHHHHHHhhccceeeeeeccchhhh
Confidence 2245678888888999999999999 4665
|
| >d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: GK2698 ortholog species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.05 E-value=0.017 Score=54.28 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=39.0
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.+++|+|++|||.|. +..+.....++.+.++++|+..||-|-+++.
T Consensus 84 ~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~~l~ 133 (221)
T d1u9ca_ 84 AHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLV 133 (221)
T ss_dssp GSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGT
T ss_pred HhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccceeee
Confidence 468999999999873 4456678889999999999999999988873
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=94.03 E-value=0.025 Score=53.45 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=38.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
||-|-|+| ==|.||=.+|+.||..|...|+||-+|-+||+.|
T Consensus 1 mr~Iai~g--KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~~ 42 (269)
T d1cp2a_ 1 MRQVAIYG--KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD 42 (269)
T ss_dssp CEEEEEEE--CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred CCEEEEEC--CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 89999997 3488999999999999999999999999999876
|
| >d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Atu0886 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.78 E-value=0.026 Score=51.60 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=37.0
Q ss_pred ccCCCEEEeCCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r--g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
..++|.|+||||.+.. ..+..+..+|.+.++++|+.+||-|-.+|+
T Consensus 61 ~~~~D~liipGG~~~~~~~~~~l~~~lr~~~~~~~~i~aiC~g~~~La 108 (188)
T d2fexa1 61 PVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALG 108 (188)
T ss_dssp TTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEEETHHHHHHH
T ss_pred hhhccEEEecCCccccccccHHHHHHHHHHHHhCCEEEEecchhHHHH
Confidence 3579999999986532 223467888999999999999999999985
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.31 E-value=0.11 Score=45.19 Aligned_cols=63 Identities=21% Similarity=0.048 Sum_probs=41.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-------ccCCCCCCCccccceEEEccCCc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-------LNTDAGTMSPFEHGEVFVLDDGG 65 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy-------ln~d~gtmsp~~hgevfv~~dg~ 65 (599)
||-|-||| .||-||=.++.-|-..|+.+|++|..||-|+- ...|.+.|.-.-..++.+..++.
T Consensus 1 Mkii~I~G--~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~~~~~~~~~~ds~r~~~~g~~~~~~~~~~~ 70 (165)
T d1xjca_ 1 MNVWQVVG--YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVATAVEGDGL 70 (165)
T ss_dssp CCEEEEEC--CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--------------------CSEEEEEETTE
T ss_pred CcEEEEEe--CCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCccccchhhccccHHHHhhccccccccChHH
Confidence 89888999 89999999999999999999999999998873 23344444333333444444443
|
| >d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Ydr533Cp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=0.047 Score=51.94 Aligned_cols=45 Identities=11% Similarity=0.063 Sum_probs=37.7
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHH
Q 007533 358 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVA 402 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll 402 (599)
..++|+|++|||.|. +..+....+++++.++++|+-.||-|-+++
T Consensus 95 ~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L 143 (236)
T d1qvwa_ 95 ADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMF 143 (236)
T ss_dssp GGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGG
T ss_pred HhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHH
Confidence 368999999999874 233567788999999999999999998866
|
| >d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: HSP31 (HchA; YedU) species: Escherichia coli [TaxId: 562]
Probab=90.22 E-value=0.06 Score=52.59 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=37.2
Q ss_pred cCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHH
Q 007533 359 KGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVA 402 (599)
Q Consensus 359 ~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll 402 (599)
.++|+|++|||.|. +..+...++++++.++++|+..||-|=.+|
T Consensus 140 ~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~L 187 (279)
T d1n57a_ 140 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAF 187 (279)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGG
T ss_pred ccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhh
Confidence 47999999999874 233567889999999999999999998776
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=89.39 E-value=0.17 Score=47.46 Aligned_cols=42 Identities=31% Similarity=0.500 Sum_probs=38.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
||||++| =-|.||=.+|++++..|..+|+||-.+-.||.-|+
T Consensus 9 ~~i~~sG--KGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~~~l 50 (296)
T d1ihua1 9 PYLFFTG--KGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNV 50 (296)
T ss_dssp SEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCH
T ss_pred eEEEEEC--CCcChHHHHHHHHHHHHHHCCCCEEEEeCCCCCCH
Confidence 7999998 56899999999999999999999999999996554
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.18 E-value=0.19 Score=43.40 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=33.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
||.|+++|. +|-||..++.-|...|..+|+++..+.
T Consensus 1 mkiivi~G~--~GsGKTT~~~~La~~L~~~~~~~~~~~ 36 (194)
T d1nksa_ 1 MKIGIVTGI--PGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp CEEEEEEEC--TTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 899999996 599999999999999999999997665
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=86.52 E-value=0.56 Score=37.24 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=50.8
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCC-ccccCCch-hhh-HHHHhccCCCEEEeCCCCCC
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED-ATEKENPD-AYK-AAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~-~~~~~~p~-~y~-~a~~~L~~~DGIlVPGGfG~ 372 (599)
-||+|+| .+. +=.|+.+.|...|+.+.+ |-+..+-+. +.....-. .+. .....+.++|-|++++|...
T Consensus 6 K~v~ViG-lG~---sG~s~a~~L~~~g~~v~~-----~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi~~ 76 (93)
T d2jfga1 6 KNVVIIG-LGL---TGLSCVDFFLARGVTPRV-----MDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIAL 76 (93)
T ss_dssp CCEEEEC-CSH---HHHHHHHHHHHTTCCCEE-----EESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTSCT
T ss_pred CEEEEEe-ECH---HHHHHHHHHHHCCCEEEE-----eeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCCCC
Confidence 4789997 542 446999999999998855 222111110 00000000 000 01234678899999998643
Q ss_pred CchhHHHHHHHHHHHcCCCEEE
Q 007533 373 RGVQGKILAAKYAREHRIPYLG 394 (599)
Q Consensus 373 rg~eg~i~aik~are~~iP~LG 394 (599)
.. ..+++|+++++|+.|
T Consensus 77 ~~-----~~~~~a~~~gi~iiG 93 (93)
T d2jfga1 77 AH-----PSLSAAADAGIEIVG 93 (93)
T ss_dssp TS-----HHHHHHHHTTCEEEC
T ss_pred CC-----HHHHHHHHcCCCeEC
Confidence 32 467889999999987
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.89 E-value=0.75 Score=41.23 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=37.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
||-|.|+++- -|.||=.+|+.++..|..+|.+|..|=+||+-
T Consensus 1 ~kvIav~s~K-GGvGKTtia~nlA~~la~~g~~VlliD~D~~~ 42 (232)
T d1hyqa_ 1 VRTITVASGK-GGTGKTTITANLGVALAQLGHDVTIVDADITM 42 (232)
T ss_dssp CEEEEEEESS-SCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CEEEEEECCC-CCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 7889998653 57899999999999999999999999999874
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=82.63 E-value=0.76 Score=43.31 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=37.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
||-|.|+| ==|.||=.+|+.||..|..+|+||-.|=+||.-|
T Consensus 2 Mr~Iaisg--KGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~~ 43 (289)
T d2afhe1 2 MRQCAIYG--KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKAD 43 (289)
T ss_dssp CEEEEEEE--CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSC
T ss_pred ccEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence 78888886 3488999999999999999999999999999866
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.18 E-value=0.88 Score=40.74 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|.|.|+|+- .|.||=.+|+.++..|..+|++|-.+-.|+.
T Consensus 3 ~vIav~~~k-GGvGKTtia~nLA~~la~~g~~VlliD~D~~ 42 (237)
T d1g3qa_ 3 RIISIVSGK-GGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEECCC-CCCcHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 678888765 8999999999999999999999999999874
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.45 E-value=0.43 Score=43.89 Aligned_cols=32 Identities=25% Similarity=0.562 Sum_probs=27.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
||-|+||||- ||||+. +.+.|.+.|++|...=
T Consensus 1 mkVvlITGas-~GIG~a-----iA~~la~~Ga~V~~~~ 32 (257)
T d1fjha_ 1 MSIIVISGCA-TGIGAA-----TRKVLEAAGHQIVGID 32 (257)
T ss_dssp CCEEEEETTT-SHHHHH-----HHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCC-CHHHHH-----HHHHHHHCCCEEEEEE
Confidence 8999999997 888885 5678889999998763
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=80.89 E-value=0.54 Score=42.54 Aligned_cols=29 Identities=34% Similarity=0.745 Sum_probs=22.4
Q ss_pred CEEEE-EeCCccCCcchHHHHHHHHHHHHHCCCeeE
Q 007533 1 MKYVL-VTGGVVSGLGKGVTASSIGVLLKACGLRVT 35 (599)
Q Consensus 1 ~k~i~-vtggv~s~~gkgi~~~s~g~ll~~~g~~v~ 35 (599)
||||+ ||||. |=||..+| .+|+.+|+.|-
T Consensus 2 mk~iIgitG~i--gSGKStv~----~~l~~~G~~vi 31 (208)
T d1vhta_ 2 LRYIVALTGGI--GSGKSTVA----NAFADLGINVI 31 (208)
T ss_dssp CCEEEEEECCT--TSCHHHHH----HHHHHTTCEEE
T ss_pred CCEEEEEECCC--cCCHHHHH----HHHHHCCCcEE
Confidence 89776 99997 55786654 57899999864
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=80.01 E-value=1 Score=41.71 Aligned_cols=43 Identities=28% Similarity=0.446 Sum_probs=34.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (599)
|.|++|| ==|.||=.+|++|+..|..+|+||-.+=+||.-|..
T Consensus 21 ~iii~sG--KGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~~l~ 63 (279)
T d1ihua2 21 GLIMLMG--KGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLS 63 (279)
T ss_dssp EEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEESCCC----
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCChH
Confidence 4566665 567899999999999999999999999999986654
|