Citrus Sinensis ID: 007545
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 599 | 2.2.26 [Sep-21-2011] | |||||||
| O65717 | 716 | Cyclic nucleotide-gated i | yes | no | 0.866 | 0.724 | 0.386 | 1e-103 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.888 | 0.748 | 0.356 | 3e-95 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.931 | 0.801 | 0.353 | 8e-92 | |
| Q9SKD7 | 706 | Probable cyclic nucleotid | no | no | 0.921 | 0.781 | 0.348 | 5e-91 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.876 | 0.716 | 0.330 | 5e-86 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.876 | 0.732 | 0.336 | 2e-84 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.876 | 0.702 | 0.325 | 3e-84 | |
| Q9SL29 | 678 | Putative cyclic nucleotid | no | no | 0.914 | 0.808 | 0.314 | 4e-81 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.878 | 0.698 | 0.326 | 1e-80 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.911 | 0.739 | 0.315 | 2e-78 |
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/549 (38%), Positives = 324/549 (59%), Gaps = 30/549 (5%)
Query: 42 WNLIFVAACWLSISLDGSFFYILYIDDYRKCLVLAKDLTFTLVVLRTVLDSFQIVYVYIR 101
WN IFV AC +++SLD FFY+ IDD +KCL + K + T VLR+ D F ++++ +
Sbjct: 95 WNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQ 154
Query: 102 AHTHVPVPDF-INGRG-FHTSKWTFAKKFFC--LLNGIVSVLPLPQAVIYLVVPKMRGHK 157
T P + GRG K AK++ + I++VLPLPQ VI +++P MRG
Sbjct: 155 FRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDILAVLPLPQMVILIIIPHMRGSS 214
Query: 158 FLSAMSLLKFVLVAQFLPRFVRMYQLFTKAASSSGAVH--GLASGIFHFLVYLLVSHSFG 215
L+ ++LKF++ Q++PRF+R+Y L+ + +SG + A F+ +Y+L SH FG
Sbjct: 215 SLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFG 274
Query: 216 ALWYFLAIVRVSVCWRQACLHAG--CSSHDSFYCDDDKS-----LNAFCPAKLRDPTSFD 268
A WY +I R +VCW+QAC C S YCD + + LN CP + + T FD
Sbjct: 275 AFWYLFSIERETVCWKQACERNNPPCISK-LLYCDPETAGGNAFLNESCPIQTPNTTLFD 333
Query: 269 FGMFHDALQSGIVEVTNFLQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGA 327
FG+F DALQSG+VE +F QKF YCF WG+++LS QN +TST WE F+ ++I G
Sbjct: 334 FGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGL 393
Query: 328 VFIPFHLWNVMQFLQHINGN-SERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVF 386
V F + N+ +LQ E ++++ ++ E W +L +NL+++IR+Y Q +
Sbjct: 394 VLFSFLIGNMQTYLQSTTTRLEEMRVKR----RDAEQWMSHRLLPENLRKRIRRYEQYKW 449
Query: 387 QGTEGFNLHQFFNDLPPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQ 446
Q T G + ++LP +L +K LCL +L VPM ++MDEQ ++A+ V YT+
Sbjct: 450 QETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTE 509
Query: 447 GMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKD------GEFCGEELVSWAVDQQS 500
++V+EG+PV+++ L ++ G L+ ++ T + G+FCGEEL++WA+D S
Sbjct: 510 ESYIVREGDPVDEM-LFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHS 568
Query: 501 DSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAA 559
S+ P STRTV A+ +V+AF+++A DLK +Q R+ QL FRY S++W+ WAA
Sbjct: 569 SSN--LPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRYYSQQWKTWAA 626
Query: 560 VIIQQAWCR 568
IQ AW R
Sbjct: 627 CFIQAAWRR 635
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Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 599 | ||||||
| 449456377 | 713 | PREDICTED: cyclic nucleotide-gated ion c | 0.914 | 0.768 | 0.381 | 1e-105 | |
| 224118210 | 709 | predicted protein [Populus trichocarpa] | 0.926 | 0.782 | 0.387 | 1e-105 | |
| 224135235 | 708 | predicted protein [Populus trichocarpa] | 0.954 | 0.807 | 0.372 | 1e-104 | |
| 449497318 | 714 | PREDICTED: cyclic nucleotide-gated ion c | 0.913 | 0.766 | 0.380 | 1e-104 | |
| 255545024 | 838 | Cyclic nucleotide-gated ion channel, put | 0.919 | 0.657 | 0.375 | 1e-104 | |
| 356509281 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.949 | 0.795 | 0.360 | 1e-104 | |
| 356516029 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.949 | 0.795 | 0.360 | 1e-104 | |
| 297796139 | 716 | hypothetical protein ARALYDRAFT_918383 [ | 0.869 | 0.727 | 0.391 | 1e-103 | |
| 6969231 | 708 | cyclic nucleotide-gated calmodulin-bindi | 0.886 | 0.75 | 0.393 | 1e-102 | |
| 15238657 | 716 | cyclic nucleotide-gated ion channel 1 [A | 0.866 | 0.724 | 0.386 | 1e-102 |
| >gi|449456377|ref|XP_004145926.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 227/595 (38%), Positives = 335/595 (56%), Gaps = 47/595 (7%)
Query: 41 NWNLIFVAACWLSISLDGSFFYILYIDDYRKCLVLAKDLTFTLVVLRTVLDSFQIVYVYI 100
WN IFV +C +++SLD FFY+ IDD +KCL L + T VLR+ D F I+++
Sbjct: 93 KWNKIFVLSCVIAVSLDPLFFYVPVIDDDKKCLGLDNKMEITASVLRSFTDIFYILHIVF 152
Query: 101 RAHTHVPVPDF-INGRG-FHTSKWTFAKKFFC--LLNGIVSVLPLPQAVIYLVVPKMRGH 156
+ T P + GRG W AK++ L I++VLPLPQ VI +++P M+G
Sbjct: 153 QFRTGFIAPSSRVFGRGVLVEDAWEIAKRYLSSYFLIDILAVLPLPQVVILIIIPNMKGS 212
Query: 157 KFLSAMSLLKFVLVAQFLPRFVRMYQLFTKAASSSGAVH-GLASGIFHFLVYLLVSHSFG 215
+ L+ LLKFV+ Q++PRF+R+Y L+ + +S A F+ +Y+L SH FG
Sbjct: 213 RSLNTKDLLKFVVFFQYVPRFIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFG 272
Query: 216 ALWYFLAIVRVSVCWRQACLHAGCSSHDSFYCDDD--KSLNAFCPAK---LRDPTSFDFG 270
A WY +I R + CW++AC GC S +S YCD D + NAF + D FDFG
Sbjct: 273 AFWYLFSIERETTCWQRACHKTGCVS-NSLYCDADVIQRNNAFLNVSCSLVEDNPPFDFG 331
Query: 271 MFHDALQSGIVEVTNFLQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVF 329
+F DAL+SG+V NF QKF YCF WG+R+LS QN QTST WE F+ ++I+G V
Sbjct: 332 IFLDALKSGVVGSMNFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEICFAVFISISGLVL 391
Query: 330 IPFHLWNVMQFLQHINGN-SERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQG 388
F + N+ +LQ E ++R+ ++ E W +L ++L+++IR+Y Q +Q
Sbjct: 392 FSFLIGNMQTYLQSTTTRLEEMRVRR----RDAEQWMSHRLLPESLRERIRRYEQYKWQE 447
Query: 389 TEGFNLHQFFNDLPPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGM 448
T G + +LP +L +K LCL +L VP+ ++MDEQ ++A+ V YT+
Sbjct: 448 TRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEES 507
Query: 449 FLVQEGNPVNKLQLIVVG---GDTLSWSSTSVFTPR--KDGEFCGEELVSWAVDQQSDSS 503
++V+EG+PV+++ I+ G T + T F K G+FCGEEL++WA+D S S+
Sbjct: 508 YIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSN 567
Query: 504 TVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVII 562
P STRTV +++V+AF+++A DLK +Q R+ QL FR S++WR WAA I
Sbjct: 568 --LPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRLYSQQWRTWAACFI 625
Query: 563 QQAWCRQRKKKFQTSLL----------------------AVTPSRFAVSSLRPIR 595
Q AW R R+KK + +LL + SRFA + LR IR
Sbjct: 626 QAAWRRYRRKKHEQTLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIR 680
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449497318|ref|XP_004160370.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|6969231|gb|AAF33670.1|AF079872_1 cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 599 | ||||||
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.883 | 0.738 | 0.381 | 1.5e-97 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.886 | 0.762 | 0.349 | 3.1e-87 | |
| TAIR|locus:2039084 | 706 | CNGC3 "cyclic nucleotide gated | 0.884 | 0.750 | 0.351 | 3.5e-86 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.883 | 0.780 | 0.322 | 3.1e-76 | |
| TAIR|locus:2039099 | 621 | CNGC11 "cyclic nucleotide-gate | 0.883 | 0.851 | 0.318 | 1.1e-73 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.737 | 0.603 | 0.335 | 4.8e-71 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.737 | 0.616 | 0.337 | 5.5e-70 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.737 | 0.591 | 0.326 | 9.2e-68 | |
| TAIR|locus:2039114 | 649 | CNGC12 "cyclic nucleotide-gate | 0.864 | 0.798 | 0.309 | 1.7e-66 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.719 | 0.584 | 0.338 | 2.8e-66 |
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 213/559 (38%), Positives = 324/559 (57%)
Query: 42 WNLIFVAACWLSISLDGSFFYILYIDDYRKCLVLAKDXXXXXXXXXXXXDSFQIVYVYIR 101
WN IFV AC +++SLD FFY+ IDD +KCL + K D F ++++ +
Sbjct: 95 WNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQ 154
Query: 102 AHTHVPVPDF-INGRGFHTS-KWTFAKKFFC--LLNGIVSVLPLPQAVIYLVVPKMRGHK 157
T P + GRG K AK++ + I++VLPLPQ VI +++P MRG
Sbjct: 155 FRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDILAVLPLPQMVILIIIPHMRGSS 214
Query: 158 FLSAMSLLKFVLVAQFLPRFVRMYQLFTKAASSSGAVH--GLASGIFHFLVYLLVSHSFG 215
L+ ++LKF++ Q++PRF+R+Y L+ + +SG + A F+ +Y+L SH FG
Sbjct: 215 SLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFG 274
Query: 216 ALWYFLAIVRVSVCWRQACLHAG--CSSHDSFYCDDDKS-----LNAFCPAKLRDPTSFD 268
A WY +I R +VCW+QAC C S YCD + + LN CP + + T FD
Sbjct: 275 AFWYLFSIERETVCWKQACERNNPPCISK-LLYCDPETAGGNAFLNESCPIQTPNTTLFD 333
Query: 269 FGMFHDALQSGIVEVTNFLQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGA 327
FG+F DALQSG+VE +F QKF YCF WG+++LS QN +TST WE F+ ++I G
Sbjct: 334 FGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGL 393
Query: 328 VFIPFHLWNVMQFLQHINGN-SERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVF 386
V F + N+ +LQ E ++++ ++ E W +L +NL+++IR+Y Q +
Sbjct: 394 VLFSFLIGNMQTYLQSTTTRLEEMRVKR----RDAEQWMSHRLLPENLRKRIRRYEQYKW 449
Query: 387 QGTEGFNLHQFFNDLPPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQ 446
Q T G + ++LP +L +K LCL +L VPM ++MDEQ ++A+ V YT+
Sbjct: 450 QETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTE 509
Query: 447 GMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKD------GEFCGEELVSWAVDQQS 500
++V+EG+PV+++ L ++ G L+ ++ T + G+FCGEEL++WA+D S
Sbjct: 510 ESYIVREGDPVDEM-LFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHS 568
Query: 501 DSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDG-QLPKCFRYGSEKWRNWAA 559
S+ P STRTV A+ +V+AF+++A DLK +Q R+ QL FRY S++W+ WAA
Sbjct: 569 SSN--LPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRYYSQQWKTWAA 626
Query: 560 VIIQQAWCRQRKKKFQTSL 578
IQ AW R KKK + SL
Sbjct: 627 CFIQAAWRRYIKKKLEESL 645
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039114 CNGC12 "cyclic nucleotide-gated channel 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00120158 | hypothetical protein (709 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.36 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.33 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.28 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.26 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.19 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.18 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.15 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.13 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.12 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.12 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.11 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.11 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.07 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.01 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.01 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 98.9 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 98.89 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 98.82 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.82 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 98.79 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 98.75 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 98.65 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 97.83 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 97.82 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 97.79 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 97.71 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.58 | |
| PF08412 | 77 | Ion_trans_N: Ion transport protein N-terminal; Int | 97.48 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.06 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.03 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 96.8 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 96.41 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 94.94 | |
| KOG2302 | 1956 | consensus T-type voltage-gated Ca2+ channel, pore- | 94.84 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 94.8 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 92.09 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 91.4 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 90.83 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 89.91 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 88.54 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 87.54 | |
| PF08006 | 181 | DUF1700: Protein of unknown function (DUF1700); In | 86.74 | |
| COG4709 | 195 | Predicted membrane protein [Function unknown] | 82.57 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-111 Score=927.69 Aligned_cols=519 Identities=31% Similarity=0.535 Sum_probs=467.2
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHhhcceeeEEEEEeccceeEeecCCchhhHHHHHHHHHHHHHHHHHHhhcccee
Q 007545 28 APRNSPSSSRSFDNWNLIFVAACWLSISLDGSFFYILYIDDYRKCLVLAKDLTFTLVVLRTVLDSFQIVYVYIRAHTHVP 107 (599)
Q Consensus 28 ~~~ii~P~s~~~~~Wd~~~~~~~~~~~~v~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~DI~l~F~tay~ 107 (599)
..+++||.|++++.||.+++++|+++++++|++||+|..++...| +|..+...++++++++|++|++||++||||||+
T Consensus 66 ~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv 143 (727)
T KOG0498|consen 66 RKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV 143 (727)
T ss_pred cceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence 334999999999999999999999999999999999999888888 899999999999999999999999999999999
Q ss_pred ccccccCCCcc-cCHHHHHHHhHH--HHHHHHHhcchhhhhheeeecCcccchhhhhhhHHHHHHHHhhhhHHHHHHHHH
Q 007545 108 VPDFINGRGFH-TSKWTFAKKFFC--LLNGIVSVLPLPQAVIYLVVPKMRGHKFLSAMSLLKFVLVAQFLPRFVRMYQLF 184 (599)
Q Consensus 108 ~~~~v~~~G~l-~d~~~Ia~~Ylk--F~~Dlls~lPl~~i~~~~~~~~~~~~~~~~~~~~lrl~~l~~~l~rl~ri~~l~ 184 (599)
+++ .-++ .||++||+||++ |++|++|++|+|++++|.++ +..........+..+.++|++||++|+++++
T Consensus 144 ~~~----s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~ 216 (727)
T KOG0498|consen 144 DPS----SYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVIPLF 216 (727)
T ss_pred CCC----CceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 983 1267 999999999999 99999999999999999876 1111222233566666778889999999999
Q ss_pred HHhhhchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhcCCCCCCcccccCCCccccccCCCCCC
Q 007545 185 TKAASSSGAVH--GLASGIFHFLVYLLVSHSFGALWYFLAIVRVSVCWRQACLHAGCSSHDSFYCDDDKSLNAFCPAKLR 262 (599)
Q Consensus 185 ~~~~~~~~~~~--~~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~~~~~~~~~~~~sW~~~~~~~~~~ 262 (599)
+++++.+|++. +|+++++++++|++++||.||+||++|.++.+.||+++ +|+...+..-..
T Consensus 217 ~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~-----------------tw~~~l~~~~~~ 279 (727)
T KOG0498|consen 217 ARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA-----------------TWLGSLGRLLSC 279 (727)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-----------------cccccccccccc
Confidence 99999999998 99998899999999999999999999999888888764 344331100011
Q ss_pred CCCCCccccchhhhccCcccccchhhHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 263 DPTSFDFGMFHDALQSGIVEVTNFLQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFL 341 (599)
Q Consensus 263 ~~~~f~~giy~~a~~~~~~~~~~~~~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il 341 (599)
.+..|+||+|.+ +.+|++|+|||++||| +||||++|+|..|++|+|++|++|+++||++||||+++|
T Consensus 280 ~~~~~~fg~~s~------------~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~i 347 (727)
T KOG0498|consen 280 YNLSFTFGIYSL------------ALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALL 347 (727)
T ss_pred CcccccccchhH------------HHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhH
Confidence 234477888754 4599999999999999 999999999999999999999999999999999999999
Q ss_pred HHhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcchhhhcCC
Q 007545 342 QHINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCLPVLKEV 421 (599)
Q Consensus 342 ~~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v 421 (599)
|+++.+.++|+.| ++++++||++|+||++||+||++|+||+|+.++|+||+++|++||++||+||++|+|.++|+++
T Consensus 348 qs~tsR~~~~r~k---~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~v 424 (727)
T KOG0498|consen 348 QSLTSRTEEMRDK---MRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKV 424 (727)
T ss_pred HHHhHHHHHHHHH---HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhC
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCc--cee--eeCCCCCeechhhhHhhhc
Q 007545 422 PMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSST--SVF--TPRKDGEFCGEELVSWAVD 497 (599)
Q Consensus 422 plF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~--g~~--~~l~~G~~fGE~~l~~~l~ 497 (599)
|+|+++|++++++||.++|+.+|+|||+|++|||+.++||||++| .+++...+ |.. ..|++||+|||+.++||++
T Consensus 425 pLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG-~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~ 503 (727)
T KOG0498|consen 425 PLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRG-SLESITTDGGGFFVVAILGPGDFFGEELLTWCLD 503 (727)
T ss_pred chhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEee-eEEEEEccCCceEEEEEecCCCccchHHHHHHhc
Confidence 999999999999999999999999999999999999999999999 99999433 333 3399999999998889985
Q ss_pred cCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc-hhchhhHHhhccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 007545 498 QQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVIIQQAWCRQRKKKFQT 576 (599)
Q Consensus 498 ~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~-~~~~l~~~~r~~~~~~~~~~~~~~q~~~~~~~~r~~~~ 576 (599)
. |+++||+|+|+||++.|+++||+.++++||+ +++++++++|+||++||+|++++||++|++|.+||.++
T Consensus 504 ~---------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~ 574 (727)
T KOG0498|consen 504 L---------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEE 574 (727)
T ss_pred C---------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccc
Confidence 2 4489999999999999999999999999999 99999999999999999999999999999999999776
Q ss_pred hhh---------------------hhhhhhhhhhhccCcCCC
Q 007545 577 SLL---------------------AVTPSRFAVSSLRPIRPE 597 (599)
Q Consensus 577 ~~~---------------------~~~~~~~~~~~~~~~~~~ 597 (599)
++. +.+|+|||+|+.++++.+
T Consensus 575 ~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 616 (727)
T KOG0498|consen 575 ELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTA 616 (727)
T ss_pred hhhhhcchhhhccccccchhhhhcccccccccccCCCccccc
Confidence 553 568999999999998753
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT) | Back alignment and domain information |
|---|
| >COG4709 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 599 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 4e-18 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 4e-28
Identities = 30/184 (16%), Positives = 71/184 (38%), Gaps = 11/184 (5%)
Query: 348 SERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSF 407
R+ ++ ++++ + H L L Q++ + Q+ + G ++ + D P EL
Sbjct: 8 YSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRA 67
Query: 408 AMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGG 467
+ L +L+ +P+ + + ++ G FL+++G+ + + V G
Sbjct: 68 DIAMHLNKELLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAI-YFVCSG 125
Query: 468 DTLSWSSTSVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAG 527
+V G+ G + ++ ++ V+A+T D I
Sbjct: 126 SMEVLKDNTVLAILGKGDLIGSDSLTKEQV---------IKTNANVKALTYCDLQYISLK 176
Query: 528 DLKE 531
L+E
Sbjct: 177 GLRE 180
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 100.0 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 100.0 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.98 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.97 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.84 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.8 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.71 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.7 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.66 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.64 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.64 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.63 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.61 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.59 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.59 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.58 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.57 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.57 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.57 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.57 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.53 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.52 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.52 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.51 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.51 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.51 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.5 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.5 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.5 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.49 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.47 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.47 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.46 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.46 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.45 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.44 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.44 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.42 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.39 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.38 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.38 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.38 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.38 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.38 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.36 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.36 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.35 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.35 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.32 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.3 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.29 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.27 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.26 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.24 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.2 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.19 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.13 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.08 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.05 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 98.94 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 98.92 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 98.91 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 98.89 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 98.8 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 98.73 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.67 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.64 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.59 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.42 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.34 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.3 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.25 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.13 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.12 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.99 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 97.96 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 97.08 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 94.99 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 92.48 | |
| 2l53_B | 31 | CAM, voltage-gated sodium channel type V alpha iso | 91.68 | |
| 2kxw_B | 27 | Sodium channel protein type 2 subunit alpha; actio | 91.16 |
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=274.11 Aligned_cols=187 Identities=16% Similarity=0.301 Sum_probs=162.8
Q ss_pred HHHHHHhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcchhh
Q 007545 338 MQFLQHINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCLPV 417 (599)
Q Consensus 338 ~~il~~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~ 417 (599)
|+|+++++++.++|+++ |+.+++||++++||++||.||++||+|.|.++++.|++++++.||++||.++..+++..+
T Consensus 1 g~ii~~~~~~~~~~~~~---~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l 77 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTR---TKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKEL 77 (212)
T ss_dssp -----------CHHHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGG
T ss_pred ChHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 46889999999999999 999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhhc
Q 007545 418 LKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAVD 497 (599)
Q Consensus 418 l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l~ 497 (599)
+ ++|+|++++++++..++..+++..|.|||+|+++||+++++|||.+| .|+++.++.....+++|++|||..+ +.
T Consensus 78 ~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G-~v~v~~~~~~~~~l~~G~~fGe~~~---~~ 152 (212)
T 3ukn_A 78 L-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSG-SMEVLKDNTVLAILGKGDLIGSDSL---TK 152 (212)
T ss_dssp G-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEEC-CEEEESSSCEEEEECTTCEEECSCC---SS
T ss_pred H-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEec-EEEEEECCeEEEEecCCCCcCcHHh---cc
Confidence 8 89999999999999999999999999999999999999999999999 9999964444455999999999877 22
Q ss_pred cCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 498 QQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 498 ~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+.. +++++|++|+++|+++.|++++|.++++++|+
T Consensus 153 ~~~------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~ 187 (212)
T 3ukn_A 153 EQV------IKTNANVKALTYCDLQYISLKGLREVLRLYPE 187 (212)
T ss_dssp SSC------CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred CCC------CCcceEEEEcccEEEEEEeHHHHHHHHHHChH
Confidence 111 15689999999999999999999999999977
|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
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| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
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| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
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| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
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| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
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| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
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| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
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| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
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| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
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| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
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| >2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} | Back alignment and structure |
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| >2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} | Back alignment and structure |
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 599 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 7e-09 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 2e-06 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 52.3 bits (124), Expect = 7e-09
Identities = 44/127 (34%), Positives = 78/127 (61%), Gaps = 7/127 (5%)
Query: 417 VLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSS-- 474
++ VP+ + MDE+ ++AI +T+ +LV+EG+PVN++ I+ G +
Sbjct: 7 GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGG 66
Query: 475 ---TSVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKE 531
+ K+G+FCG+EL++WA+D +S + P STRTV+A+T+V+AF++ A +LK
Sbjct: 67 RSGFYNRSLLKEGDFCGDELLTWALDPKS--GSNLPSSTRTVKALTEVEAFALIADELKF 124
Query: 532 FVNQCRQ 538
+Q R+
Sbjct: 125 VASQFRR 131
|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.98 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.83 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.73 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.69 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.69 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.69 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.68 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.68 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.67 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.58 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.52 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.46 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.41 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.41 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.36 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.35 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.23 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.2 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.09 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 98.92 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.7 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 93.0 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 92.91 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 85.19 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=6.5e-32 Score=258.07 Aligned_cols=184 Identities=20% Similarity=0.355 Sum_probs=167.9
Q ss_pred hhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcchhhhcCCCcc
Q 007545 345 NGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCLPVLKEVPML 424 (599)
Q Consensus 345 ~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~vplF 424 (599)
|+++++|+++ ++.+++||+.++||++|+.||++|++|.|.. ++.+++++++.||++|+.++..+++.++++++|+|
T Consensus 1 ds~~~~f~~~---~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F 76 (193)
T d1q3ea_ 1 DSSRRQYQEK---YKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLF 76 (193)
T ss_dssp CHHHHHHHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHH
T ss_pred ChhHHHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHH
Confidence 4567899999 9999999999999999999999999999975 78899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhhccCCCCCC
Q 007545 425 QRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAVDQQSDSST 504 (599)
Q Consensus 425 ~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l~~~~~~~~ 504 (599)
+++++.++..|+..+++..|.|||+|+++||++++||||.+| .|++...++....+++|++|||..+ +.+ .
T Consensus 77 ~~~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G-~v~v~~~~~~~~~l~~G~~fGe~~~---~~~--~--- 147 (193)
T d1q3ea_ 77 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGNKEMKLSDGSYFGEICL---LTR--G--- 147 (193)
T ss_dssp HTSCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEEC-CEEEEC-CCCEEEECTTCEECHHHH---HHC--S---
T ss_pred HhhhHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeee-eEEeecCCcceeeeccceeeeeeec---cCC--C---
Confidence 999999999999999999999999999999999999999999 9999966666667999999999977 221 1
Q ss_pred CcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhchhh
Q 007545 505 VFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQLP 544 (599)
Q Consensus 505 ~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~~l~ 544 (599)
+++.|++|.++|+++.|++++|.+++++||+..+.+.
T Consensus 148 ---~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~ 184 (193)
T d1q3ea_ 148 ---RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFE 184 (193)
T ss_dssp ---BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHH
T ss_pred ---cccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 5689999999999999999999999999987444443
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|