Citrus Sinensis ID: 007546

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------60
MAKGSGLSIDHNISDPIAGKNKNFFLCHQPAVLNSFSDDHHHFHKFHYLMDAKRSPATTPSTIQFPVCLNHDEDSPQQSSDDHHHHNKRKVIDEMDFFTDKNTHSRDHHHYKDSKLELNVNTGLNLLTTNTSSDHSTVDDGISTNMEDKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHNAKAADENSDGRQVEEKKGQLAAPRRFIDLGLGVNTADTADEPALSSSEGRSRDLGGSPVNGNSNNNEESNVLFGQDKKEFVQRDDSPDRNYGPNKVPKFSSSSKNVDQTEATMRKARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTSSAARLLLSGSMSSADGLMNANFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPSNVQRSPNQFQVPFPNPSHNFANGAAAAAAGSLLPQIFGQALYNQSKFSGLQMSQDMDPSQLGNQSQLPSPAMQQGQQHNSLADSVSAATAAIAADPNFTAALAAAITSIINGGTPQSNNVTNNENTDDLATTTNGNVKFSQSS
cccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHccccccccccccccccccccccccccccHHHHcccccEEEEEEEccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccEEccccEEEEcccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccEEEcccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccEEEEEEEcccccccccccHHHcccEEEccccccccEEEEccccccccHHHHEEcccccEEEEEEEcccccccccHcHHccccccccHHHHccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
makgsglsidhnisdpiagknknfflchqpavlnsfsddhhhfHKFHylmdakrspattpstiqfpvclnhdedspqqssddhhhhnkrkvidemdfftdknthsrdhhhykdsklelnvNTGLNllttntssdhstvddgistnmedkkaKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHnakaadensdgrqveekkgqlaaprrfidlglgvntadtadepalsssegrsrdlggspvngnsnnneesnvlfgqdkkefvqrddspdrnygpnkvpkfssssknvdqtEATMRKARVSVrarseapmindgcqwrkygqkmakgnpcprayyrctmaagcpvrkqvqRCAEDRTILITtyegnhnhplppaamAMASTTSSAARLLLSGsmssadglMNANFLArtllpcsssmatisasapfptvtldltqtpnpsnvqrspnqfqvpfpnpshnfanGAAAAAAGSLLPQIFGQALYnqskfsglqmsqdmdpsqlgnqsqlpspamqqgqqhnslADSVSAATAAIAADPNFTAALAAAITSIinggtpqsnnvtnnentddlatttngnvkfsqss
makgsglsidhniSDPIAGKNKNFFLCHQPAVLNSFSDDHHHFHKFHYLMDAKRSPATTPSTIQFPVCLNHDEDSPQQSSDDHHHHNKRKVIDEMDFFTDKNThsrdhhhykdsklelNVNTGLNLLttntssdhstvdDGISTNMEDKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHNAKaadensdgrqVEEKkgqlaaprrfidlglgvntadtadepalsssegrsrdlggspvngnsnnneesnVLFGQDKKEFvqrddspdrnygpnkvpkfssssknvdqteaTMRKArvsvrarseapmindgcqwrkygQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTSSAARLLLSGSMSSADGLMNANFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPSNVQRSPNQFQVPFPNPSHNFANGAAAAAAGSLLPQIFGQALYNQSKFSGLQMSQDMDPSQLGNQSQLPSPAMQQGQQHNSLADSVSAATAAIAADPNFTAALAAAITSIINGGTPQSNNVTNNEntddlatttngnvkfsqss
MAKGSGLSIDHNISDPIAGKNKNFFLCHQPAVLNsfsddhhhfhkfhYLMDAKRSPATTPSTIQFPVCLNhdedspqqssddhhhhNKRKVIDEMDFFTDKNTHSRDHHHYKDSKLElnvntglnllttntSSDHSTVDDGISTNMEDKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHNAKAADENSDGRQVEEKKGQLAAPRRFIDLGLGVNTADTADEPALSSSEGRSRDLggspvngnsnnneesnvLFGQDKKEFVQRDDSPDRNYGPNKVPKFSSSSKNVDQTEATMRKARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPaamamasttssaarlllsgsmssaDGLMNANFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPSNVQRSPNQFQVPFPNPSHNFangaaaaaagSLLPQIFGQALYNQSKFSGLQMSQDMDPSQLGNQSQLPSPAMQQGQQHNSLadsvsaataaiaadpnftaalaaaITSIINGGTPQSNNVTNNENTDDLATTTNGNVKFSQSS
****************IAGKNKNFFLCHQPAVLNSFSDDHHHFHKFHYLMDA**********IQFPVCL**************************************************VNTGLNL**********************************************KDMVNEVTNNYNALQLQLMAFM*****************************FIDLGLGV***********************************************************************************************INDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEG**********************************LMNANFLARTLLPCS***************************************************AAAAGSLLPQIFGQALYN**********************************************AAIAADPNFTAALAAAITSIIN********************************
***GSG**IDHNISDPIAGKNKNFFLCHQPAVLNSFSDD******************************************************EM***********************NVNTGLN*************************************************MVNEVTNNYNALQLQLM********************************************************************************************************************************ARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHP***********************************************************************************************************************************************************SAATAAIAADPNFTAALAAAITS***********************************
MAKGSGLSIDHNISDPIAGKNKNFFLCHQPAVLNSFSDDHHHFHKFHYLMDAKRSPATTPSTIQFPVCLNHD**************NKRKVIDEMDFFTDK***********DSKLELNVNTGLNLLTTNTSSDHSTVDDGISTNMEDKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHH********************LAAPRRFIDLGLGVNTADTA****************GSPVNGNSNNNEESNVLFGQDKKEFVQRDDSPDRNYGPNKV****************************EAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTSSAARLLLSGSMSSADGLMNANFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPSNVQRSPNQFQVPFPNPSHNFANGAAAAAAGSLLPQIFGQALYNQSKFSGLQMS********************************SAATAAIAADPNFTAALAAAITSIINGGTPQSNNVTNNENTDDLATTTNGNVKFSQSS
*********DHNISDPIAGKNKNFFLCHQPAVLNSFSD**********************STIQFP**L******************KRKVIDEMDFFTDK***************ELNVNTGLNLLTTN*************TN*EDKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHN****************************************************************************************************************MRKARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPL***************************************************SAPFPTVTLDLTQTPNP*NVQRSPNQFQVPFPNPSHNFANGAAAAAAGSLLPQIFGQALYN*SKFSG******************************SLADSVSAATAAIAADPNFTAALAAAITSIING*******************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKGSGLSIDHNISDPIAGKNKNFFLCHQPAVLNSFSDDHHHFHKFHYLMDAKRSPATTPSTIQFPVCLNHDEDSPQQSSDDHHHHNKRKVIDEMDFFTDKNTHSRDHHHYKDSKLELNVNTGLNLLTTNTSSDHSTVDDGISTNMExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLMAFMQHHNAKAADENSDGRQVEEKKGQLAAPRRFIDLGLGVNTADTADEPALSSSEGRSRDLGGSPVNGNSNNNEESNVLFGQDKKEFVQRDDSPDRNYGPNKVPKFSSSSKNVDQTEATMRKARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTSSAARLLLSGSMSSADGLMNANFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPSNVQRSPNQFQVPFPNPSHNFANGAAAAAAGSLLPQIFGQALYNQSKFSGLQMSQDMDPSQLGNQSQLPSPAMQQGQQHNSLADSVSAATAAIAADPNFTAALAAAITSIINGGTPQSNNVTNNENTDDLATTTNGNVKFSQSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query599 2.2.26 [Sep-21-2011]
Q9XEC3528 Probable WRKY transcripti yes no 0.752 0.854 0.495 1e-116
Q9C519553 WRKY transcription factor no no 0.791 0.857 0.496 1e-116
Q93WT0538 Probable WRKY transcripti no no 0.784 0.873 0.520 1e-109
Q9ZSI7489 Probable WRKY transcripti no no 0.661 0.809 0.380 3e-57
Q8VWV6480 Probable WRKY transcripti no no 0.692 0.864 0.325 3e-46
Q9C9F0374 Probable WRKY transcripti no no 0.350 0.561 0.431 5e-44
Q9LXG8548 Probable WRKY transcripti no no 0.398 0.436 0.424 4e-42
Q9CAR4387 Probable WRKY transcripti no no 0.507 0.785 0.356 8e-40
Q9SAH7302 Probable WRKY transcripti no no 0.429 0.850 0.276 2e-23
Q9C5T4310 WRKY transcription factor no no 0.337 0.651 0.284 5e-22
>sp|Q9XEC3|WRK42_ARATH Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1 Back     alignment and function desciption
 Score =  420 bits (1080), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 275/555 (49%), Positives = 346/555 (62%), Gaps = 104/555 (18%)

Query: 63  IQFPVCLNHDEDSPQQSSDDHHHHNKRKVIDEMDFF-----------TDKNTHSRDHH-- 109
            +FPV L        + SD+ H   +R V++E+DFF            ++N  + + H  
Sbjct: 2   FRFPVSLGGGPRENLKPSDEQH---QRAVVNEVDFFRSAEKRDRVSREEQNIIADETHRV 58

Query: 110 HYK---------DSKLELNVNTGLNLLTTNTSSDHSTVDDGISTNMEDKKAKNEYAVVQA 160
           H K         D +   ++N GLNLLT NT SD S VDDG+S +ME+K+ K E A ++ 
Sbjct: 59  HVKRENSRVDDHDDRSTDHINIGLNLLTANTGSDESMVDDGLSVDMEEKRTKCENAQLRE 118

Query: 161 ELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH---HNAKAADENSDGRQVEEKKGQ 217
           EL++ + +NQRLK M+++ TNN+N+LQ+QL+A M+    H+  A  EN+D  +   +  +
Sbjct: 119 ELKKASEDNQRLKQMLSQTTNNFNSLQMQLVAVMRQQEDHHHLATTENNDNVKNRHEVPE 178

Query: 218 LAAPRRFIDLGLGVNTADTADEPALSSSEGRSRDLGGSPVNGNSNNNEESNVLFGQDKKE 277
           +  PR+FIDLG        +DE    SSE R+    GSP +    ++        Q+ K 
Sbjct: 179 MV-PRQFIDLG------PHSDE---VSSEERTTVRSGSPPSLLEKSSSR------QNGKR 222

Query: 278 FVQRDDSPD------RNYGPNKVPKF-------------SSSSKNVDQT--EATMRKARV 316
            + R++SP+      RN  PNKVPK              ++SSK ++Q   EATMRKARV
Sbjct: 223 VLVREESPETESNGWRN--PNKVPKHHASSSICGGNGSENASSKVIEQAAAEATMRKARV 280

Query: 317 SVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILI 376
           SVRARSEAPM++DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDRTILI
Sbjct: 281 SVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILI 340

Query: 377 TTYEGNHNHPLPPAAMAMASTTSSAARLLLSGS-MSSADGLMN-ANFLARTLLPCSSSMA 434
           TTYEGNHNHPLPPAAM MASTT++AA +LLSGS MS+ DGLMN  N LART+LPCSSSMA
Sbjct: 341 TTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLARTILPCSSSMA 400

Query: 435 TISASAPFPTVTLDLTQTPNPSNVQRSP-NQFQVPFPNPSHNFANGAAAAAAGSLLPQIF 493
           TISASAPFPT+TLDLT++PN +N   +P  QF                     S+LP + 
Sbjct: 401 TISASAPFPTITLDLTESPNGNNPTNNPLMQFS----------QRSGLVELNQSVLPHMM 450

Query: 494 GQALY--NQSKFSGLQMSQDMDPSQLGNQSQLPSPAMQQGQQHNSLADSVSAATAAIAAD 551
           GQALY   QSKFSGL M               PS  +  G       +SVSAATAAIA++
Sbjct: 451 GQALYYNQQSKFSGLHM---------------PSQPLNAG-------ESVSAATAAIASN 488

Query: 552 PNFTAALAAAITSII 566
           PNF AALAAAITSII
Sbjct: 489 PNFAAALAAAITSII 503
Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1 Back     alignment and function description
>sp|Q93WT0|WRK31_ARATH Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSI7|WRK47_ARATH Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2 Back     alignment and function description
>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9F0|WRKY9_ARATH Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1 Back     alignment and function description
>sp|Q9CAR4|WRK36_ARATH Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1 Back     alignment and function description
>sp|Q9SAH7|WRK40_ARATH Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5T4|WRK18_ARATH WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query599
359485613593 PREDICTED: WRKY transcription factor 6-l 0.904 0.913 0.644 0.0
147841888620 hypothetical protein VITISV_024690 [Viti 0.898 0.867 0.638 0.0
224131614571 predicted protein [Populus trichocarpa] 0.879 0.922 0.620 1e-177
255567719652 WRKY transcription factor, putative [Ric 0.914 0.840 0.648 1e-175
224068990613 predicted protein [Populus trichocarpa] 0.914 0.893 0.594 1e-169
356547095614 PREDICTED: WRKY transcription factor 6 [ 0.928 0.905 0.565 1e-169
356544798614 PREDICTED: WRKY transcription factor 6-l 0.889 0.868 0.543 1e-153
356515294628 PREDICTED: probable WRKY transcription f 0.884 0.843 0.565 1e-151
209867508556 WRKY transcription factor [Picrorhiza ku 0.796 0.857 0.606 1e-150
449453702469 PREDICTED: probable WRKY transcription f 0.742 0.948 0.608 1e-149
>gi|359485613|ref|XP_002269696.2| PREDICTED: WRKY transcription factor 6-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/580 (64%), Positives = 432/580 (74%), Gaps = 38/580 (6%)

Query: 1   MAKGSGLSIDHNISDPIAGKNKNFFLCHQPAVLNSFSDDHHHFHKFHYLMDAKRSPATTP 60
           MAKGSGLS     SDPI      FFL H+P V+NSF +DH    K    MDA ++ +TT 
Sbjct: 1   MAKGSGLSFG---SDPI------FFL-HKPIVINSFPEDHS---KRFAAMDATKNQSTT- 46

Query: 61  STIQFPVCLN-HDEDSPQQSSDDHHHHNKRKVIDEMDFFTDKNTHSRD-HHHYKDSKLEL 118
            TIQFPV LN    DSP    DD     K +++DEMDFF DKN  S+      K+S    
Sbjct: 47  -TIQFPVNLNCAHPDSP--VPDDE----KPRIVDEMDFFADKNRDSKPPTTDNKNSPYYF 99

Query: 119 NVNTGLNLLTTNTSSDHSTVDDGIST-NMEDKKAKNEYAVVQAELERVNAENQRLKDMVN 177
           NVNTGL+LLT NTSSD S VDDG+S  N++DK+ KNE  V+QAE+ER++AEN+RL+ M+N
Sbjct: 100 NVNTGLHLLTANTSSDQSMVDDGMSPPNVDDKRVKNELVVLQAEIERMHAENERLRSMLN 159

Query: 178 EVTNNYNALQLQLMAFMQHHNAKAADENSDGRQVEEKKGQLAAPRRFIDLGLGVNTADTA 237
           +VTNNYNALQ+ ++A MQ   A+  +E+ D +      G +  PR+FIDLGL        
Sbjct: 160 QVTNNYNALQVHMVALMQDQKAENNEEH-DQKHSGNNNGGVVVPRQFIDLGLAAKA--EV 216

Query: 238 DEPALSSSEGRSRDLGGSPVNGNSNNNEESNVLFGQDKKEF---VQRDDSPDRN--YGPN 292
           +EP+LSSSEGRS D  GSP+N     ++E   L   +KKE+   + R++SPD+   +G N
Sbjct: 217 EEPSLSSSEGRSGDRSGSPINNGEVGSKELE-LRKNEKKEYSSGIGREESPDQGSQWGAN 275

Query: 293 KVPKFSSSSKNVDQTEATMRKARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYR 352
           KVP+ + S KNVDQTEATMRKARVSVRARSEAPMI DGCQWRKYGQKMAKGNPCPRAYYR
Sbjct: 276 KVPRLNPS-KNVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYR 334

Query: 353 CTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTSSAARLLLSGSMSS 412
           CTMAAGCPVRKQVQRCAEDR+ILITTYEGNHNHPLPPAAMAMASTTSSAAR+LLSGSM S
Sbjct: 335 CTMAAGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMPS 394

Query: 413 ADGLMNANFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPSNVQRSPNQFQVPFPNP 472
           ADGLMN+NFLART+LPCSSSMATISASAPFPTVTLDLTQ PNP   QR P+QF VP PNP
Sbjct: 395 ADGLMNSNFLARTVLPCSSSMATISASAPFPTVTLDLTQNPNPLQFQRPPSQFYVPSPNP 454

Query: 473 SHNFANGAAAAAAGSLLPQIFGQALYNQSKFSGLQMSQDMDPSQLGNQSQLPSPAMQQGQ 532
           + N A G AAA   SLLPQIF QALYNQSKFSGLQMSQDM+ +QL    Q    + QQ  
Sbjct: 455 TQNLA-GPAAATPSSLLPQIFNQALYNQSKFSGLQMSQDMEAAQLPTHHQP---SSQQQS 510

Query: 533 QHNSLADSVSAATAAIAADPNFTAALAAAITSIINGGTPQ 572
           Q NSLA++VSAATAAI ADPNFTAALAAAITSII G  PQ
Sbjct: 511 QQNSLAETVSAATAAITADPNFTAALAAAITSIIGGAQPQ 550

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147841888|emb|CAN65218.1| hypothetical protein VITISV_024690 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131614|ref|XP_002321134.1| predicted protein [Populus trichocarpa] gi|222861907|gb|EEE99449.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255567719|ref|XP_002524838.1| WRKY transcription factor, putative [Ricinus communis] gi|223535898|gb|EEF37558.1| WRKY transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224068990|ref|XP_002302873.1| predicted protein [Populus trichocarpa] gi|222844599|gb|EEE82146.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356547095|ref|XP_003541953.1| PREDICTED: WRKY transcription factor 6 [Glycine max] Back     alignment and taxonomy information
>gi|356544798|ref|XP_003540834.1| PREDICTED: WRKY transcription factor 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356515294|ref|XP_003526336.1| PREDICTED: probable WRKY transcription factor 31-like [Glycine max] Back     alignment and taxonomy information
>gi|209867508|gb|ACI90292.1| WRKY transcription factor [Picrorhiza kurrooa] Back     alignment and taxonomy information
>gi|449453702|ref|XP_004144595.1| PREDICTED: probable WRKY transcription factor 42-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query599
TAIR|locus:2120623538 WRKY31 "WRKY DNA-binding prote 0.619 0.689 0.494 2e-98
TAIR|locus:2137179528 WRKY42 [Arabidopsis thaliana ( 0.671 0.761 0.453 3e-89
TAIR|locus:2018052553 WRKY6 [Arabidopsis thaliana (t 0.732 0.793 0.398 1.3e-75
TAIR|locus:2133432489 WRKY47 [Arabidopsis thaliana ( 0.383 0.470 0.445 1.1e-60
TAIR|locus:2034964480 WRKY61 "WRKY DNA-binding prote 0.535 0.668 0.324 3.2e-39
TAIR|locus:2196779387 WRKY36 "WRKY DNA-binding prote 0.537 0.832 0.318 3.9e-37
TAIR|locus:2150876548 WRKY72 "WRKY DNA-binding prote 0.594 0.649 0.311 1.7e-36
TAIR|locus:2199317374 WRKY9 "WRKY DNA-binding protei 0.383 0.614 0.376 4.6e-34
UNIPROTKB|Q6IEL0348 WRKY71 "Transcription factor W 0.106 0.183 0.671 4.6e-29
TAIR|locus:2025687302 WRKY40 "WRKY DNA-binding prote 0.138 0.274 0.511 2.7e-28
TAIR|locus:2120623 WRKY31 "WRKY DNA-binding protein 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 893 (319.4 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
 Identities = 206/417 (49%), Positives = 257/417 (61%)

Query:   133 SDHSTVDDGISTNMEDKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192
             SD STVDDG+S +MEDK+AK E A +Q EL+++  ENQRL+DM+++ T N+NALQ+QL+A
Sbjct:    89 SDESTVDDGLSMDMEDKRAKIENAQLQEELKKMKIENQRLRDMLSQATTNFNALQMQLVA 148

Query:   193 FMQHHNAK--------AADENSDGRQVEEKKGQLAAPRRFIDLGLGVNTADTADEPALSS 244
              M+    +        A +  ++GR+ +E   Q+  PR+F+DLG    ++  A+  A  S
Sbjct:   149 VMRQQEQRNSSQDHLLAQESKAEGRKRQEL--QIMVPRQFMDLG---PSSGAAEHGAEVS 203

Query:   245 SEGRS--RDLXXXXXXXXXXXXXXXXXLFGQDKKEFVQRDDSPDRNYG-PNKVPKFSSSS 301
             SE R+  R                   L G+++      ++S    +G PNKVPK + SS
Sbjct:   204 SEERTTVRSGSPPSLLESSNPRENGKRLLGREESS----EESESNAWGNPNKVPKHNPSS 259

Query:   302 KN---------VDQT--EATMRKARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAY 350
              N         +DQ+  EATMRKARVSVRARSEA MI+DGCQWRKYGQKMAKGNPCPRAY
Sbjct:   260 SNSNGNRNGNVIDQSAAEATMRKARVSVRARSEAAMISDGCQWRKYGQKMAKGNPCPRAY 319

Query:   351 YRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPXXXXXXXXXXXXXXXXXXXXX 410
             YRCTMA GCPVRKQVQRCAEDR+ILITTYEGNHNHPLPP                     
Sbjct:   320 YRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSM 379

Query:   411 XXXDGLMN-ANFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPSNVQRSPNQFQVPF 469
                DGLMN  N LAR +LPCSSSMATISASAPFPT+TLDLT +PN +N   + N      
Sbjct:   380 SSQDGLMNPTNLLARAILPCSSSMATISASAPFPTITLDLTNSPNGNNPNMTTN------ 433

Query:   470 PNPSHNFXXXXXXXXXXSLLPQIFGQALYN---QSKFSGLQMSQDMDPSQLGNQSQL 523
              NP   F          ++LPQ+ GQA+YN   QSKFSGLQ+     P Q+   S +
Sbjct:   434 -NPLMQFAQRPGFNP--AVLPQVVGQAMYNNQQQSKFSGLQLPAQ--PLQIAATSSV 485
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
TAIR|locus:2137179 WRKY42 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018052 WRKY6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133432 WRKY47 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034964 WRKY61 "WRKY DNA-binding protein 61" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196779 WRKY36 "WRKY DNA-binding protein 36" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150876 WRKY72 "WRKY DNA-binding protein 72" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199317 WRKY9 "WRKY DNA-binding protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IEL0 WRKY71 "Transcription factor WRKY71" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2025687 WRKY40 "WRKY DNA-binding protein 40" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XIV3374
SubName- Full=Putative uncharacterized protein; (571 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query599
smart0077459 smart00774, WRKY, DNA binding domain 2e-34
pfam0310660 pfam03106, WRKY, WRKY DNA -binding domain 5e-34
>gnl|CDD|214815 smart00774, WRKY, DNA binding domain Back     alignment and domain information 
 Score =  124 bits (313), Expect = 2e-34
 Identities = 35/58 (60%), Positives = 44/58 (75%)

Query: 328 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNH 385
           +DG QWRKYGQK+ KG+P PR+YYRCT   GCP +KQVQR  +D +++  TYEG H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59
>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 599
smart0077459 WRKY DNA binding domain. The WRKY domain is a DNA 99.96
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 99.95
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 92.68
PF0450062 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 88.84
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 88.84
TIGR00219283 mreC rod shape-determining protein MreC. MreC (mur 87.02
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 86.94
KOG0646476 consensus WD40 repeat protein [General function pr 85.71
PRK11677134 hypothetical protein; Provisional 85.34
COG4026290 Uncharacterized protein containing TOPRIM domain, 84.23
PF06295128 DUF1043: Protein of unknown function (DUF1043); In 82.05
PF14645116 Chibby: Chibby family 81.81
PRK13922276 rod shape-determining protein MreC; Provisional 80.95
>smart00774 WRKY DNA binding domain Back     alignment and domain information 
Probab=99.96  E-value=9.6e-30  Score=205.89  Aligned_cols=59  Identities=59%  Similarity=1.223  Sum_probs=57.2

Q ss_pred             CCCchhHhHhccccccCCCCCCCcccccCCCCCccccceeeecCCCcEEEEEecccCCC
Q 007546          327 INDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNH  385 (599)
Q Consensus       327 ~~DGy~WRKYGQK~iKgnp~PRsYYrCt~a~gCpvkKqVQr~~~D~si~~tTY~G~HnH  385 (599)
                      ++|||+|||||||.|+|+++||+||||++.++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999789999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>TIGR00219 mreC rod shape-determining protein MreC Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK11677 hypothetical protein; Provisional Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>PF14645 Chibby: Chibby family Back     alignment and domain information
>PRK13922 rod shape-determining protein MreC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query599
2ayd_A76 Crystal Structure Of The C-Terminal Wrky Domainof A 1e-19
1wj2_A78 Solution Structure Of The C-Terminal Wrky Domain Of 1e-18
>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76 Back     alignment and structure 
Iteration: 1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 314 ARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRT 373
           +R+ V  ++   ++NDG +WRKYGQK  KG+P PR+YYRC+ + GCPV+K V+R + D  
Sbjct: 1   SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTK 59
Query: 374 ILITTYEGNHNHPLPP 389
           +LITTYEG H+H +PP
Sbjct: 60  LLITTYEGKHDHDMPP 75
>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query599
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 1e-46
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 1e-45
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76 Back     alignment and structure
 Score =  157 bits (399), Expect = 1e-46
 Identities = 40/77 (51%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 314 ARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRT 373
           +R+ V  ++   ++NDG +WRKYGQK  KG+P PR+YYRC+ + GCPV+K V+R + D  
Sbjct: 1   SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTK 59

Query: 374 ILITTYEGNHNHPLPPA 390
           +LITTYEG H+H +PP 
Sbjct: 60  LLITTYEGKHDHDMPPG 76
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query599
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 99.98
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 99.97
2zxx_A79 Geminin; coiled-coil, cell cycle, coiled coil, DNA 92.05
1wlq_A83 Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z 86.83
1uii_A83 Geminin; human, DNA replication, cell cycle; 2.00A 86.27
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 85.33
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 84.69
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 82.3
2wvr_A209 Geminin; DNA replication license, DNA replication 80.96
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 80.5
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
Probab=99.98  E-value=1.4e-33  Score=237.13  Aligned_cols=75  Identities=53%  Similarity=1.128  Sum_probs=72.0

Q ss_pred             eeEEEEecCCCCCCCCchhHhHhccccccCCCCCCCcccccCCCCCccccceeeecCCCcEEEEEecccCCCCCCh
Q 007546          314 ARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  389 (599)
Q Consensus       314 ~rVsv~t~s~~~~~~DGy~WRKYGQK~iKgnp~PRsYYrCt~a~gCpvkKqVQr~~~D~si~~tTY~G~HnH~~p~  389 (599)
                      .||+|++.++..+++|||+|||||||.|||+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            389999999999999999999999999999999999999998 699999999999999999999999999999875
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus} Back     alignment and structure
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A* Back     alignment and structure
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1 Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 599
d1wj2a_71 g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr 8e-34
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71 Back     information, alignment and structure

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  121 bits (304), Expect = 8e-34
 Identities = 41/71 (57%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 318 VRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILIT 377
           V+  SE  +++DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D   ++T
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVT 59

Query: 378 TYEGNHNHPLP 388
           TYEG HNH LP
Sbjct: 60  TYEGKHNHDLP 70

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query599
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 99.97
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=2.6e-33  Score=230.53  Aligned_cols=70  Identities=59%  Similarity=1.146  Sum_probs=66.4

Q ss_pred             EEecCCCCCCCCchhHhHhccccccCCCCCCCcccccCCCCCccccceeeecCCCcEEEEEecccCCCCCC
Q 007546          318 VRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLP  388 (599)
Q Consensus       318 v~t~s~~~~~~DGy~WRKYGQK~iKgnp~PRsYYrCt~a~gCpvkKqVQr~~~D~si~~tTY~G~HnH~~p  388 (599)
                      |++.++.++++|||+|||||||.|||+++||+||||+. ++|+|+|+|||+++|+.+++|||+|+|||+.|
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            45678888999999999999999999999999999998 69999999999999999999999999999976