Citrus Sinensis ID: 007553
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 599 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZG8 | 1045 | Probable LRR receptor-lik | yes | no | 0.836 | 0.479 | 0.338 | 4e-72 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.833 | 0.445 | 0.339 | 1e-69 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.826 | 0.512 | 0.379 | 4e-69 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.804 | 0.437 | 0.368 | 1e-68 | |
| Q9LYN8 | 1192 | Leucine-rich repeat recep | no | no | 0.901 | 0.453 | 0.311 | 2e-67 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.799 | 0.382 | 0.338 | 1e-66 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.803 | 0.385 | 0.355 | 7e-65 | |
| Q6XAT2 | 967 | LRR receptor-like serine/ | no | no | 0.828 | 0.512 | 0.352 | 2e-64 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.794 | 0.431 | 0.361 | 3e-64 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.808 | 0.430 | 0.336 | 1e-62 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 273 bits (697), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 192/567 (33%), Positives = 290/567 (51%), Gaps = 66/567 (11%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
LSG IP E G ++ L L L N+LTG IPS +G+++ L L+L N LNGSIP E G +
Sbjct: 274 LSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEM 333
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
+ + DL + NKL G +P S G LT L L L NQLSG +P + N L L LD NN
Sbjct: 334 ESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNN 393
Query: 152 L------------------------TGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNL 187
GP+P +L L + N+ G + + G
Sbjct: 394 FTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVY 453
Query: 188 KNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQ 247
L+ + L+ NN G + + L LS+N + G IPP I N+T L+ LDLSSN+
Sbjct: 454 PTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNR 513
Query: 248 LSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNC 307
++G LP + N+ + L L+ N L G IP I LTNL L+L N+ +S IPP L N
Sbjct: 514 ITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNL 573
Query: 308 SQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNN 367
+L + ++ N L +IP + L L+ LDLS+N ++G I SQ + N+ +D+S NN
Sbjct: 574 PRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNN 633
Query: 368 LSGVIP---KSVFRVPGLKWSENNLE--VENPVISENAPPPQTQHFKGNK---------- 412
LSG IP K + + + S NNL+ + + NAPP F+GNK
Sbjct: 634 LSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPP---DAFEGNKDLCGSVNTTQ 690
Query: 413 ----------GKNQKIVTPLVTIILPMVA---FLALIFGILFVHRRMDEKINPNTREMKK 459
K+ K ++ I++P++ L++ GI R+ ++I +T + +
Sbjct: 691 GLKPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHT-DSES 749
Query: 460 CADEFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSE 519
+ SI+ +DG++ ++E+I+AT +F KY IGTGG+G VY+A+L + ++A+KKL+ +
Sbjct: 750 GGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA-IMAVKKLNETT 808
Query: 520 TEELAFLETSS---------TDFRHYN 537
++ T T+ RH N
Sbjct: 809 DSSISNPSTKQEFLNEIRALTEIRHRN 835
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 200/589 (33%), Positives = 289/589 (49%), Gaps = 90/589 (15%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L+G IPS G L L +L L N LTG IP E+G++ +++L L+ N L GSIP FGNL
Sbjct: 330 LTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNL 389
Query: 92 K------------------------DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQ 127
K + +L L NKL G +P S GN T L L L +N
Sbjct: 390 KNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNH 449
Query: 128 LSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNL 187
LSG +P V N +L +L LD NN TG P T+ +L + L YN+L GP+PK + +
Sbjct: 450 LSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDC 509
Query: 188 KNLDSLLLNRNNLTGPIPSTIGF---LNLLD---------------------ELRLSHNR 223
K+L N TG I G LN +D L +S+N
Sbjct: 510 KSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNN 569
Query: 224 LDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYL 283
+ G IP I N+T L LDLS+N L G LP +GNL L L L+ N L G +P + +L
Sbjct: 570 ITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFL 629
Query: 284 TNLTSLNLGYNQLNSSIP-----------------------PELMNCSQLQNLAVNHNSL 320
TNL SL+L N +S IP P L +QL L ++HN L
Sbjct: 630 TNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPRLSKLTQLTQLDLSHNQL 689
Query: 321 SGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKS-VFRV 379
G IPS++ +L L +LDLSHN ++G IP+ + ++ VD+S N L G +P + FR
Sbjct: 690 DGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFR- 748
Query: 380 PGLKWSENNLEVENPVISENAPPPQTQHFKGNKGKNQKIVTPLVTIILPMVAFLAL--IF 437
K + + LE EN + N P + + + K K +K +V I++P++ L + I
Sbjct: 749 ---KATADALE-ENIGLCSNIPKQRLKPCRELK-KPKKNGNLVVWILVPILGVLVILSIC 803
Query: 438 GILFVHRRMDEKINPNTREMKKCADEFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYG 497
F + K+ + + SI+ DG+ ++++I++T +F + IGTGGY
Sbjct: 804 ANTFTYCIRKRKLQNGRNTDPETGENMSIFSVDGKFKYQDIIESTNEFDPTHLIGTGGYS 863
Query: 498 SVYRAQLSSGRVVALKKLHRSETEELA-------FLE--TSSTDFRHYN 537
VYRA L ++A+K+LH + EE++ FL + T+ RH N
Sbjct: 864 KVYRANLQD-TIIAVKRLHDTIDEEISKPVVKQEFLNEVKALTEIRHRN 911
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 195/514 (37%), Positives = 280/514 (54%), Gaps = 19/514 (3%)
Query: 31 FLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGN 90
L+G + S+ L+ L D+ N LTGTIP IG+ L++SYN + G IP G
Sbjct: 202 MLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQITGEIPYNIGF 261
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
L+ + L LQGN+L G IP IG + L LDLS N+L G +P +GNL L+L N
Sbjct: 262 LQ-VATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPILGNLSFTGKLYLHGN 320
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGF 210
LTGPIPS L ++++LS L L N LVG +P E+G L+ L L L N L GPIPS I
Sbjct: 321 MLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISS 380
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
L++ + N L G IP NL LT L+LSSN G +P E+G++ LD L L N
Sbjct: 381 CAALNQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGN 440
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN 330
N G IP T+G L +L LNL N L+ +P E N +Q + V+ N LSG IP+E+G
Sbjct: 441 NFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQ 500
Query: 331 LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP--KSVFRVPGLKWSENN 388
L +L L L++N ++G IP QL + ++VS NNLSG++P K+ R + N
Sbjct: 501 LQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLSGIVPPMKNFSRFAPASFVGNP 560
Query: 389 LEVENPVISENAPPPQTQHFKGNKGKNQKIVTPLVTIILPMVAFLALIFGILFVHRRMDE 448
N V S P P+++ F ++G L+ I+L ++ L +IF L V++ M +
Sbjct: 561 YLCGNWVGSICGPLPKSRVF--SRGA-------LICIVLGVITLLCMIF--LAVYKSMQQ 609
Query: 449 -KINPNTREMKKCADEFSIWDYDGRI-TFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSS 506
KI + + + + I D I TF+++++ TE+ + K+ IG G +VY+ L S
Sbjct: 610 KKILQGSSKQAEGLTKLVILHMDMAIHTFDDIMRVTENLNEKFIIGYGASSTVYKCALKS 669
Query: 507 GRVVALKKLHRSETEELAFLET---SSTDFRHYN 537
R +A+K+L+ L ET + RH N
Sbjct: 670 SRPIAIKRLYNQYPHNLREFETELETIGSIRHRN 703
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 190/515 (36%), Positives = 280/515 (54%), Gaps = 33/515 (6%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L+G IP E G + LK+L L N L G IP E+G L L +L+LS N LNG+IP E L
Sbjct: 319 LTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFL 378
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
L DL+L N+L+G IP IG +N + LD+S N LSG +P + L+ L L +N
Sbjct: 379 PYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNK 438
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFL 211
L+G IP L L+ L L N L G LP E+ NL+NL +L L++N L+G I + +G L
Sbjct: 439 LSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKL 498
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGN------------- 258
L+ LRL++N G IPP IGNLT + ++SSNQL+G +P+E+G+
Sbjct: 499 KNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNK 558
Query: 259 -----------LKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNC 307
L YL+ L L N L G IP + G LT L L LG N L+ +IP EL
Sbjct: 559 FSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKL 618
Query: 308 SQLQ-NLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKN 366
+ LQ +L ++HN+LSG+IP +GNL L L L+ N ++G IP+ +G + ++ ++S N
Sbjct: 619 TSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNN 678
Query: 367 NLSGVIP-KSVFRVPGLKWSENNLEVENPVISENAP-PPQTQ---HFKGNKGKNQKIVTP 421
NL G +P +VF+ N + N S P P + ++ N + QKI+T
Sbjct: 679 NLVGTVPDTAVFQRMDSSNFAGNHGLCNSQRSHCQPLVPHSDSKLNWLINGSQRQKILT- 737
Query: 422 LVTIILPMVAFLALIFGILFVHRRMDEKINPNTREMKKCADEFSIWDYDGRITFEEMIQA 481
+T I+ FL G+ + +R + + K + + G T++ ++ A
Sbjct: 738 -ITCIVIGSVFLITFLGLCWTIKRREPAFVALEDQTKPDVMDSYYFPKKG-FTYQGLVDA 795
Query: 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLH 516
T +F +G G G+VY+A++S G V+A+KKL+
Sbjct: 796 TRNFSEDVVLGRGACGTVYKAEMSGGEVIAVKKLN 830
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 197/633 (31%), Positives = 312/633 (49%), Gaps = 93/633 (14%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
++G IP + L L LDL N TG IP + +L+E SYN L G +P E GN
Sbjct: 413 INGSIPEDLWKLP-LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNA 471
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
L L L N+L G IP IG LT+L+ L+L+ N G++P E+G+ +L +L L +NN
Sbjct: 472 ASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNN 531
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPK------------EVGNLKNLDSLLLNRNN 199
L G IP + L QL L L+YNNL G +P ++ L++ L+ N
Sbjct: 532 LQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNR 591
Query: 200 LTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGN- 258
L+GPIP +G +L E+ LS+N L G IP ++ LT LT LDLS N L+G +P+E+GN
Sbjct: 592 LSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNS 651
Query: 259 -----------------------LKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQ 295
L L L+L +N L GP+P ++G L LT ++L +N
Sbjct: 652 LKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNN 711
Query: 296 LNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKI 355
L+ + EL +L L + N +G IPSE+GNL L LD+S N ++G IP+++ +
Sbjct: 712 LSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGL 771
Query: 356 PNVSEVDVSKNNLSGVIPK-SVFRVPGLKWSENNLEVENPVISENAPPPQTQHFKGNKGK 414
PN+ ++++KNNL G +P V + P N E+ V+ + +G K +
Sbjct: 772 PNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDC------KIEGTKLR 825
Query: 415 NQKIVTPLVTIILPMVAFLALIFGILF------VHRRMDEKINPNTRE---MKKCADE-- 463
+ + L M+ F ++F +F + +R+ ++ +P E +K D+
Sbjct: 826 SAWGIAGL------MLGFTIIVFVFVFSLRRWAMTKRVKQRDDPERMEESRLKGFVDQNL 879
Query: 464 -------------FSIWDYDG---RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSG 507
+I ++ ++ ++++AT+ F K IG GG+G+VY+A L
Sbjct: 880 YFLSGSRSREPLSINIAMFEQPLLKVRLGDIVEATDHFSKKNIIGDGGFGTVYKACLPGE 939
Query: 508 RVVALKKLHRSET----EELAFLETSSTDFRH--------YNSHTDNDDSSDEHLANN-- 553
+ VA+KKL ++T E +A +ET +H Y S ++ E++ N
Sbjct: 940 KTVAVKKLSEAKTQGNREFMAEMETLG-KVKHPNLVSLLGYCSFSEEKLLVYEYMVNGSL 998
Query: 554 EHFLSAPENY-ERVDFSPDFSIADQSKKGFKLL 585
+H+L E +D+S IA + +G L
Sbjct: 999 DHWLRNQTGMLEVLDWSKRLKIAVGAARGLAFL 1031
|
Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 186/550 (33%), Positives = 280/550 (50%), Gaps = 71/550 (12%)
Query: 26 IWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIP 85
++ RF SG +P E G +RL+ +D NRL+G IPS IG L+DL L+L N L G+IP
Sbjct: 440 LYENRF-SGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIP 498
Query: 86 LEFGNLKDLYDLRLQGNKLDGLIPSSIG------------------------NLTNLTHL 121
GN + + L N+L G IPSS G NL NLT +
Sbjct: 499 ASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRI 558
Query: 122 DLSLNQLSGRL-----------------------PQEVGNLKNLVSLFLDNNNLTGPIPS 158
+ S N+ +G + P E+G NL L L N TG IP
Sbjct: 559 NFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPR 618
Query: 159 TLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELR 218
T +++LS L ++ N+L G +P E+G K L + LN N L+G IP+ +G L LL EL+
Sbjct: 619 TFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELK 678
Query: 219 LSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP 278
LS N+ G +P I +LT + +L L N L+G +P+E+GNL+ L++L+L+ N L GP+P
Sbjct: 679 LSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPS 738
Query: 279 TIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQN-LAVNHNSLSGSIPSEIGNLIHLRQL 337
TIG L+ L L L N L IP E+ LQ+ L +++N+ +G IPS I L L L
Sbjct: 739 TIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESL 798
Query: 338 DLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVENPVIS 397
DLSHN + G +P Q+G + ++ +++S NNL G + K R + N +P+
Sbjct: 799 DLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRWQADAFVGNAGLCGSPL-- 856
Query: 398 ENAPPPQTQHFKGNKGKNQKIVTPLVTIILPMVAFLALI-----FGILFVHRRMD--EKI 450
H KNQ+ ++P +I+ ++ LA I ILF + D +K+
Sbjct: 857 --------SHCNRAGSKNQRSLSPKTVVIISAISSLAAIALMVLVIILFFKQNHDLFKKV 908
Query: 451 NPNTREMKKC-----ADEFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLS 505
A FS I ++++++AT + ++ IG+GG G VY+A+L
Sbjct: 909 RGGNSAFSSNSSSSQAPLFSNGGAKSDIKWDDIMEATHYLNEEFMIGSGGSGKVYKAELK 968
Query: 506 SGRVVALKKL 515
+G +A+KK+
Sbjct: 969 NGETIAVKKI 978
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 201/565 (35%), Positives = 279/565 (49%), Gaps = 84/565 (14%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L G++P E AL +L+VL L NR +G IP EIG+ L +++ N G IP G L
Sbjct: 420 LEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRL 479
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
K+L L L+ N+L G +P+S+GN L LDL+ NQLSG +P G LK L L L NN+
Sbjct: 480 KELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNS 539
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVG-----------------------PLPKEVGNLK 188
L G +P +L L L+ + L++N L G +P E+GN +
Sbjct: 540 LQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQ 599
Query: 189 NLDSLLLNRNNLTGPIPSTIGF---LNLLD---------------------ELRLSHNRL 224
NLD L L +N LTG IP T+G L+LLD + L++N L
Sbjct: 600 NLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFL 659
Query: 225 DGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLT 284
GPIPP +G L+ L L LSSNQ LP E+ N L LSLD N+L G IP IG L
Sbjct: 660 SGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLG 719
Query: 285 NLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ-LDLSHNF 343
L LNL NQ + S+P + S+L L ++ NSL+G IP EIG L L+ LDLS+N
Sbjct: 720 ALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNN 779
Query: 344 INGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENNLEVENPVISENA 400
G IPS +G + + +D+S N L+G +P SV + L + S NNL +
Sbjct: 780 FTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQFSRW 839
Query: 401 PPPQTQHFKGNKG----------------KNQKIVTPLVTIILPMVAFLALIFGIL---- 440
P F GN G K Q + V II + A A+ IL
Sbjct: 840 P---ADSFLGNTGLCGSPLSRCNRVRSNNKQQGLSARSVVIISAISALTAIGLMILVIAL 896
Query: 441 FVHRRMD--EKINPNTREMKKCADE--------FSIWDYDGRITFEEMIQATEDFHIKYC 490
F +R D +K+ + + F I +E++++AT + ++
Sbjct: 897 FFKQRHDFFKKVGHGSTAYTSSSSSSQATHKPLFRNGASKSDIRWEDIMEATHNLSEEFM 956
Query: 491 IGTGGYGSVYRAQLSSGRVVALKKL 515
IG+GG G VY+A+L +G VA+KK+
Sbjct: 957 IGSGGSGKVYKAELENGETVAVKKI 981
|
Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 181/514 (35%), Positives = 275/514 (53%), Gaps = 18/514 (3%)
Query: 31 FLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGN 90
L+G + + L+ L D+ N LTGTIP IG+ L++SYN + G IP G
Sbjct: 204 MLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVSYNQITGVIPYNIGF 263
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
L+ + L LQGNKL G IP IG + L LDLS N+L+G +P +GNL L+L N
Sbjct: 264 LQ-VATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPILGNLSFTGKLYLHGN 322
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGF 210
LTG IP L ++++LS L L N LVG +P E+G L+ L L L NNL G IPS I
Sbjct: 323 KLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFELNLANNNLVGLIPSNISS 382
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
L++ + N L G +P NL LT L+LSSN G +P E+G++ LD+L L N
Sbjct: 383 CAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSGN 442
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN 330
N G IP T+G L +L LNL N LN ++P E N +Q + V+ N L+G IP+E+G
Sbjct: 443 NFSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQIIDVSFNFLAGVIPTELGQ 502
Query: 331 LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP--KSVFRVPGLKWSENN 388
L ++ L L++N I+G IP QL +++ +++S NNLSG+IP K+ R + N
Sbjct: 503 LQNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPPMKNFTRFSPASFFGNP 562
Query: 389 LEVENPVISENAPP-PQTQHFKGNKGKNQKIVTPLVTIILPMVAFLALIFGILFVHRRMD 447
N V S P P++Q F ++ ++L + + +IF ++ ++
Sbjct: 563 FLCGNWVGSICGPSLPKSQVFTR---------VAVICMVLGFITLICMIFIAVYKSKQQK 613
Query: 448 EKINPNTREMKKCADEFSIWDYDGRI-TFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSS 506
+ ++++ + + + I D I TF+++++ TE+ KY IG G +VY+ +
Sbjct: 614 PVLKGSSKQ-PEGSTKLVILHMDMAIHTFDDIMRVTENLDEKYIIGYGASSTVYKCTSKT 672
Query: 507 GRVVALKKLHRSETEELAFLET---SSTDFRHYN 537
R +A+K+++ ET + RH N
Sbjct: 673 SRPIAIKRIYNQYPSNFREFETELETIGSIRHRN 706
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 187/518 (36%), Positives = 277/518 (53%), Gaps = 42/518 (8%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L+G IP E G + L++L L N+LTGTIP E+ +L++L +L+LS N L G IPL F L
Sbjct: 325 LTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYL 384
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
+ L+ L+L N L G IP +G ++L LD+S N LSGR+P + N++ L L NN
Sbjct: 385 RGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNN 444
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVG------------------------PLPKEVGNL 187
L+G IP+ + L L LA NNLVG +P+EVGN
Sbjct: 445 LSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNC 504
Query: 188 KNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQ 247
L L L N TG +P IG L+ L L +S N+L G +P I N L LD+ N
Sbjct: 505 SALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNN 564
Query: 248 LSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNC 307
SG LP EVG+L L+ L L NNL G IP +G L+ LT L +G N N SIP EL +
Sbjct: 565 FSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSL 624
Query: 308 SQLQ-NLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKN 366
+ LQ L +++N L+G IP E+ NL+ L L L++N ++G IPS + ++ + S N
Sbjct: 625 TGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYN 684
Query: 367 NLSGVIPKSVFRVPGLKWSENNLEVENPVISENAPPPQTQHFK-----GNKG--KNQKIV 419
+L+G IP + R + N + P +++ QTQ F G G ++ KI+
Sbjct: 685 SLTGPIP--LLRNISMSSFIGNEGLCGPPLNQCI---QTQPFAPSQSTGKPGGMRSSKII 739
Query: 420 TPLVTIILPMVAFLALIFGILFVHRRMDEKINPNTREMKKCADEFSIW--DYDGRITFEE 477
+I + L LI I+++ RR + + ++ + I+ +G TF++
Sbjct: 740 AITAAVIGGVS--LMLIALIVYLMRRPVRTVASSAQDGQPSEMSLDIYFPPKEG-FTFQD 796
Query: 478 MIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKL 515
++ AT++F + +G G G+VY+A L +G +A+KKL
Sbjct: 797 LVAATDNFDESFVVGRGACGTVYKAVLPAGYTLAVKKL 834
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 174/517 (33%), Positives = 263/517 (50%), Gaps = 33/517 (6%)
Query: 31 FLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGN 90
LSG IP E +S L++L L N+LTG IP+E+ LR+L +L+LS N L G IP F N
Sbjct: 336 LLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQN 395
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
L + L+L N L G+IP +G + L +D S NQLSG++P + NL+ L L +N
Sbjct: 396 LTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSN 455
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGF 210
+ G IP + L L + N L G P E+ L NL ++ L++N +GP+P IG
Sbjct: 456 RIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGT 515
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
L L L+ N+ +P I L+ L + ++SSN L+G +P E+ N K L L L RN
Sbjct: 516 CQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRN 575
Query: 271 NLIGPIPP------------------------TIGYLTNLTSLNLGYNQLNSSIPPELMN 306
+ IG +PP TIG LT+LT L +G N + SIPP+L
Sbjct: 576 SFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGL 635
Query: 307 CSQLQ-NLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSK 365
S LQ + +++N SG IP EIGNL L L L++N ++G IP+ + ++ + S
Sbjct: 636 LSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSY 695
Query: 366 NNLSGVIPKS-VFRVPGLKWSENNLEVENPVISENAPP----PQTQHFKGNKGKNQKIVT 420
NNL+G +P + +F+ L N + + P P K + +I+
Sbjct: 696 NNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSCDPSHSSWPHISSLKAGSARRGRIII 755
Query: 421 PLVTIILPMVAFLALIFGILFVHRRMDEKINPNTREMKKCADEFSIWDY-DGRITFEEMI 479
+ + L LI ++ R E P + + E I+ R T ++++
Sbjct: 756 --IVSSVIGGISLLLIAIVVHFLRNPVEPTAPYVHDKEPFFQESDIYFVPKERFTVKDIL 813
Query: 480 QATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLH 516
+AT+ FH Y +G G G+VY+A + SG+ +A+KKL
Sbjct: 814 EATKGFHDSYIVGRGACGTVYKAVMPSGKTIAVKKLE 850
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 599 | ||||||
| 225452751 | 878 | PREDICTED: probable leucine-rich repeat | 0.871 | 0.594 | 0.430 | 7e-99 | |
| 296085303 | 789 | unnamed protein product [Vitis vinifera] | 0.849 | 0.645 | 0.422 | 2e-97 | |
| 359484066 | 843 | PREDICTED: probable LRR receptor-like se | 0.849 | 0.603 | 0.422 | 4e-97 | |
| 147852997 | 661 | hypothetical protein VITISV_031965 [Viti | 0.777 | 0.704 | 0.427 | 5e-97 | |
| 225465647 | 820 | PREDICTED: probable LRR receptor-like se | 0.814 | 0.595 | 0.414 | 7e-94 | |
| 296085307 | 874 | unnamed protein product [Vitis vinifera] | 0.826 | 0.566 | 0.437 | 5e-93 | |
| 359484068 | 868 | PREDICTED: probable leucine-rich repeat | 0.826 | 0.570 | 0.437 | 7e-93 | |
| 224110038 | 964 | predicted protein [Populus trichocarpa] | 0.858 | 0.533 | 0.380 | 6e-91 | |
| 224065673 | 964 | predicted protein [Populus trichocarpa] | 0.858 | 0.533 | 0.380 | 7e-91 | |
| 357451683 | 1029 | Receptor protein kinase-like protein [Me | 0.848 | 0.493 | 0.370 | 7e-90 |
| >gi|225452751|ref|XP_002277606.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 242/562 (43%), Positives = 327/562 (58%), Gaps = 40/562 (7%)
Query: 1 MDNNGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTI 60
D+ ELS+L F+ FP+LV + L+G IP + G L++L +L L N LTG +
Sbjct: 76 FDSGKKLGELSKLEFSSFPSLVELFLSDCG-LNGSIPHQIGTLTQLIILYLPLNNLTGEL 134
Query: 61 PSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120
P + +L L L+L N L+GSIP E G +K+L L N L G+IPSS GNLTNLT+
Sbjct: 135 PLSLANLTQLEYLSLHSNRLHGSIPPEIGKMKNLIYFILHDNNLTGVIPSSFGNLTNLTY 194
Query: 121 LDLSLNQLSG------------------------RLPQEVGNLKNLVSLFLDNNNLTGPI 156
L L NQ+SG +P E+G L+NL LFLD NNLT I
Sbjct: 195 LYLGSNQISGFIPPQIGKMKNLEFLSLSYNGLHGSIPPEIGKLQNLNYLFLDYNNLTSVI 254
Query: 157 PSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDE 216
PS+ +L L+ LYL N + G +P ++G +KNL+ L L+ N L GPIP IG L L
Sbjct: 255 PSSFGNLTNLTYLYLDSNQISGFIPPQIGKIKNLELLELSYNGLHGPIPLEIGKLKNLKI 314
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L L +N L G IP + GNLT LT L L NQ+SG +P E+G +K L +L N+L G I
Sbjct: 315 LNLGYNNLIGVIPSSFGNLTNLTYLTLGGNQISGFIPPEIGKMKNLIFFNLGYNSLTGVI 374
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P + G LT+LTSL L NQ+N SIPPE+ L L +N N +SG IP EI NL L
Sbjct: 375 PSSFGNLTHLTSLILRGNQINGSIPPEIGYLLDLLYLDLNTNQISGFIPEEILNLKKLGH 434
Query: 337 LDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVENPVI 396
LD+S+N I+G IPS+LG + ++S+NN+SG IP S + W+ +L
Sbjct: 435 LDISNNLISGKIPSELGNLKEAIYFNLSRNNISGTIPLS---ISNNMWTLFDLSHNQLEG 491
Query: 397 SENAPPPQTQHFKG----------NKGKNQKIVTPLVTIILPMVAFLALIFGILFVHRRM 446
AP H KG K ++Q I+ +++ ++ +A + G LF +++
Sbjct: 492 QSTAPLEAFDHNKGLCDGIKGLSHCKKRHQIILIIAISLSATLLLSVA-VLGFLFRKQKI 550
Query: 447 DEKINPNTREMKKCADEFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSS 506
+ P T ++K D FSIWDYDG I ++++IQATEDF IKYCIGTGGYGSVYRAQL S
Sbjct: 551 RKNQLPKTTKVKN-GDLFSIWDYDGVIAYQDIIQATEDFDIKYCIGTGGYGSVYRAQLPS 609
Query: 507 GRVVALKKLHRSETEELAFLET 528
G+VVALKKLH E ++ +L++
Sbjct: 610 GKVVALKKLHGWERDDPTYLKS 631
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085303|emb|CBI29035.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 223/528 (42%), Positives = 328/528 (62%), Gaps = 19/528 (3%)
Query: 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSE 63
+G ELS+L F+ FP+L+ + + + GRIP E G L++L L +S + G +P
Sbjct: 31 DGKMVELSKLKFSSFPSLLHLNVSHSS-IYGRIPDEIGMLTKLTYLRISECDVHGELPVS 89
Query: 64 IGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN-KLDGLIPSSIGNLTNLTHLD 122
+G+L L EL+L+YN L+G IP G LK+L L L N L G+IPSS+G L NL +LD
Sbjct: 90 LGNLTLLEELDLAYNNLSGVIPSSLGYLKNLIHLDLSFNYGLSGVIPSSLGYLKNLKYLD 149
Query: 123 LSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPK 182
LS+N+++G +P ++GNLKNL L+L +N+L+G IPS+L +L+ L L+L +N + G +P
Sbjct: 150 LSINEINGSIPYQIGNLKNLTHLYLVSNSLSGVIPSSLANLSNLEYLFLNFNRINGSIPS 209
Query: 183 EVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLD 242
E+GNLKNL L + N+L G IP ++G L L L L +N++ G IP + G+LT LT L+
Sbjct: 210 EIGNLKNLVQLCFSHNSLIGTIPPSLGHLTNLTYLHLFNNQIQGGIPLSFGHLTKLTDLN 269
Query: 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPP 302
L NQ++G +P + NLK L L LD NNL G IP ++GYL +L N+ N++N IP
Sbjct: 270 LCDNQINGSIPPIIWNLKNLIHLRLDHNNLTGVIPSSLGYLIHLNEFNISGNRINGHIPS 329
Query: 303 ELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVD 362
+ N + L L ++ N + G IPS++ NL L L+LSHN ++G+IP+ L +D
Sbjct: 330 TIGNLNNLTRLDLSANLIHGKIPSQVQNLKRLTYLNLSHNKLSGSIPTLLIYDHIKPSLD 389
Query: 363 VSKNNLSGVIPKSVFRVPGLKWSENNLEVENPVISENAPPPQTQHFKGNKGKNQKIVTPL 422
+S N+L G IP F + K+S+ + + + + P K + T +
Sbjct: 390 LSHNDLEGHIP---FELQS-KFSQGSFDNNKGLCGDIKGLPHC--------KEEYKTTRI 437
Query: 423 VTIILPMVAFL-ALIFGILFVHRRMDEKINPNTREM-KKCADEFSIWDYDGRITFEEMIQ 480
+ I L FL ++ G L + R+ KI T+E+ K D FS+W+YDG+I +E++I+
Sbjct: 438 IVISLSTTLFLFFVVLGFLLLSRK-TRKI--QTKEIPTKNGDIFSVWNYDGKIAYEDIIK 494
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLET 528
ATEDF IKYCIGTGGYGSVY+AQL +G VVALKKLH E +E +L++
Sbjct: 495 ATEDFDIKYCIGTGGYGSVYKAQLPTGNVVALKKLHGWERDEAIYLKS 542
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484066|ref|XP_002271307.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 223/528 (42%), Positives = 328/528 (62%), Gaps = 19/528 (3%)
Query: 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSE 63
+G ELS+L F+ FP+L+ + + + GRIP E G L++L L +S + G +P
Sbjct: 85 DGKMVELSKLKFSSFPSLLHLNVSHSS-IYGRIPDEIGMLTKLTYLRISECDVHGELPVS 143
Query: 64 IGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK-LDGLIPSSIGNLTNLTHLD 122
+G+L L EL+L+YN L+G IP G LK+L L L N L G+IPSS+G L NL +LD
Sbjct: 144 LGNLTLLEELDLAYNNLSGVIPSSLGYLKNLIHLDLSFNYGLSGVIPSSLGYLKNLKYLD 203
Query: 123 LSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPK 182
LS+N+++G +P ++GNLKNL L+L +N+L+G IPS+L +L+ L L+L +N + G +P
Sbjct: 204 LSINEINGSIPYQIGNLKNLTHLYLVSNSLSGVIPSSLANLSNLEYLFLNFNRINGSIPS 263
Query: 183 EVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLD 242
E+GNLKNL L + N+L G IP ++G L L L L +N++ G IP + G+LT LT L+
Sbjct: 264 EIGNLKNLVQLCFSHNSLIGTIPPSLGHLTNLTYLHLFNNQIQGGIPLSFGHLTKLTDLN 323
Query: 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPP 302
L NQ++G +P + NLK L L LD NNL G IP ++GYL +L N+ N++N IP
Sbjct: 324 LCDNQINGSIPPIIWNLKNLIHLRLDHNNLTGVIPSSLGYLIHLNEFNISGNRINGHIPS 383
Query: 303 ELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVD 362
+ N + L L ++ N + G IPS++ NL L L+LSHN ++G+IP+ L +D
Sbjct: 384 TIGNLNNLTRLDLSANLIHGKIPSQVQNLKRLTYLNLSHNKLSGSIPTLLIYDHIKPSLD 443
Query: 363 VSKNNLSGVIPKSVFRVPGLKWSENNLEVENPVISENAPPPQTQHFKGNKGKNQKIVTPL 422
+S N+L G IP F + K+S+ + + + + P K + T +
Sbjct: 444 LSHNDLEGHIP---FELQS-KFSQGSFDNNKGLCGDIKGLPHC--------KEEYKTTRI 491
Query: 423 VTIILPMVAFL-ALIFGILFVHRRMDEKINPNTREM-KKCADEFSIWDYDGRITFEEMIQ 480
+ I L FL ++ G L + R+ KI T+E+ K D FS+W+YDG+I +E++I+
Sbjct: 492 IVISLSTTLFLFFVVLGFLLLSRK-TRKI--QTKEIPTKNGDIFSVWNYDGKIAYEDIIK 548
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLET 528
ATEDF IKYCIGTGGYGSVY+AQL +G VVALKKLH E +E +L++
Sbjct: 549 ATEDFDIKYCIGTGGYGSVYKAQLPTGNVVALKKLHGWERDEAIYLKS 596
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147852997|emb|CAN79070.1| hypothetical protein VITISV_031965 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 218/510 (42%), Positives = 293/510 (57%), Gaps = 44/510 (8%)
Query: 24 FRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS 83
F I L+G I + G+L++L +LDLS+N+LT IP +IGSL L L+LS+N L G
Sbjct: 99 FLILSRMGLNGSISDQIGSLTKLTILDLSHNQLTDPIPHQIGSLTKLTHLDLSFNQLTGP 158
Query: 84 IPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLV 143
IP + G L +L L L N L +IPSS+G LT LTHLDLS NQL+G +P ++G L L
Sbjct: 159 IPHQIGTLTELTYLNLSSNVLTDVIPSSLGRLTKLTHLDLSFNQLTGPIPHQIGTLTELT 218
Query: 144 SLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGP 203
L L +N LT IPS+L L +L+ L L N L+G +P ++G+L L L L+ N LTGP
Sbjct: 219 YLPLSSNVLTDVIPSSLGRLTKLTHLDLYCNKLIGSIPHQIGSLTKLTHLDLSSNQLTGP 278
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
I + IG L L L S N L G IP ++G LT LT L L NQL+G +P ++G L L
Sbjct: 279 ILNQIGTLIELTYLEFSGNELTGVIPSSLGRLTKLTHLGLFYNQLNGSIPHQIGTLTELT 338
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGS 323
L + N L G +P ++G LT L SL+L NQ+N SIPPE+ N L L ++ N +SG
Sbjct: 339 YLHISGNELTGAMPSSLGCLTKLISLDLCKNQINGSIPPEIGNIKSLVTLDLSDNLISGE 398
Query: 324 IPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLK 383
IPS + NL L +LDLS+N ++G +PS + + +++S+N+
Sbjct: 399 IPSSLKNLKKLGRLDLSYNRLSGNLPSFITNNCKQTTINLSQND---------------- 442
Query: 384 WSENNLEVENPVISENAPPPQTQHFKGNKG-----KNQKIVTPLVTIILPMVAFLALIFG 438
H +G G + I L+ + + F+ LI G
Sbjct: 443 -----------------------HLEGYAGYSICTRGHTISLTLIISLSLTLFFVTLILG 479
Query: 439 ILFVHRRMDEKINPNTREMKKCADEFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYGS 498
F ++ P + KK D FSIWDYDGRI FE+MI ATEDF I+YCIG GGYGS
Sbjct: 480 FAFGLWWKKRQLQPESMAAKKNGDLFSIWDYDGRIAFEDMISATEDFDIRYCIGVGGYGS 539
Query: 499 VYRAQLSSGRVVALKKLHRSETEELAFLET 528
VYRAQL SG+VVA+KKLHRSE +E +L +
Sbjct: 540 VYRAQLPSGKVVAVKKLHRSEIDEPTYLRS 569
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465647|ref|XP_002270862.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 218/526 (41%), Positives = 318/526 (60%), Gaps = 38/526 (7%)
Query: 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSE 63
+G ELS+L F+ FP+L+ + + + GRIP E G L++L L +S + G +P
Sbjct: 85 DGKMVELSKLKFSSFPSLLHLYVSHSS-IYGRIPDEIGMLTKLTYLRISECDVYGELPVS 143
Query: 64 IGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN-KLDGLIPSSIGNLTNLTHLD 122
+G+L L EL+L+YN L+G IP G LK+L L L N L G+IP S+G L NL +LD
Sbjct: 144 LGNLTLLEELDLAYNNLSGVIPSSLGYLKNLIHLDLSFNYGLSGVIPPSLGYLKNLKYLD 203
Query: 123 LSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPK 182
LS+N+++G +P ++GNLKNL L+L +N+L+G IPS L +L+ L L+L +N + G +P
Sbjct: 204 LSINEINGSIPSQIGNLKNLTHLYLVSNSLSGVIPSPLANLSNLEYLFLNFNRINGSIPS 263
Query: 183 EVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLD 242
E+GNLKNL L L+ N+L G IPS++G L L L L +N++ G IP + G+LT LT L
Sbjct: 264 EIGNLKNLVQLCLSHNSLIGAIPSSLGHLTNLTYLHLFNNQIQGGIPLSFGHLTNLTDLY 323
Query: 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPP 302
L NQ++G +P + NLK L L LD NNL G IP ++GYL +L N+ NQ++ IP
Sbjct: 324 LCYNQINGSIPPIIWNLKNLIHLRLDHNNLTGVIPSSLGYLIHLHEFNISGNQISGQIPS 383
Query: 303 ELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVD 362
+ N + L L ++ N + G IPS++ NL L L+LSHN ++G+IP+ L +D
Sbjct: 384 SIGNLNNLTRLDLSDNLIHGKIPSQVQNLKRLVYLNLSHNKLSGSIPTLLIYDHIRPSLD 443
Query: 363 VSKNNLSGVIPKSVFRVPGLKWSENNLEVENPVISENAPPPQTQHFKGNKGKNQKIVTPL 422
+S N+L G IP F + K+S+ + + + + P + + K +I+T
Sbjct: 444 LSYNDLEGHIP---FELQS-KFSQGSFDNNKGLCGDIKGLPHCK----EEYKTTRIIT-- 493
Query: 423 VTIILPMVAFLALIFGILFVHRRMDEKINPNTREMKKCADEFSIWDYDGRITFEEMIQAT 482
R++ K P K D FS+W+YDG+I +E++I+AT
Sbjct: 494 ---------------------RKIQTKEIPT-----KNGDIFSVWNYDGKIAYEDIIKAT 527
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLET 528
EDF IKYCIGTGGYGSVY+AQL +G VVALKKLH ET+E +L++
Sbjct: 528 EDFDIKYCIGTGGYGSVYKAQLPTGNVVALKKLHGWETDEATYLKS 573
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085307|emb|CBI29039.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 234/535 (43%), Positives = 317/535 (59%), Gaps = 40/535 (7%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNI-LNGSIPLEFGN 90
L G +P G L+ L L L++NR+ G+IPSEIG+L++L+ L+LSYN L+G+IP G
Sbjct: 95 LDGELPVSLGNLTLLVYLSLNFNRINGSIPSEIGNLKNLIHLDLSYNYYLSGAIPSSLGY 154
Query: 91 LKDLYDLRL-QGNKLDGLIPSSIGNLTNLTHLDLSLNQ-LSGRLPQEVGNLKNLVSLFLD 148
LK+L L L L G IPSS+G L NL HLDLS N L G +P +GNL NLV L L+
Sbjct: 155 LKNLIHLDLSHCYSLYGAIPSSLGYLKNLIHLDLSHNSDLYGVIPSSLGNLTNLVYLSLN 214
Query: 149 NNNLTGPIPSTLYHLNQLSTLYLAYNN-LVGPLPKEVGNLKNLDSLLLNRNNLTGPIPST 207
N + G IPS + +L L L L+YN L G +P +G LKNL L L N+L+ IPS+
Sbjct: 215 FNRINGSIPSEIGNLKNLIHLDLSYNYYLSGAIPSSIGYLKNLIHLDLGSNSLSSVIPSS 274
Query: 208 IGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
+G L L+ L L+ NR++G IP IGNL L L LS N L G +P +GNL L L
Sbjct: 275 LGSLTNLEYLYLNFNRINGSIPSEIGNLKNLVQLSLSHNALLGTIPSSLGNLINLTYFHL 334
Query: 268 DRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLS------ 321
N + G IP + G LTNLT L L YNQ+N SIPP + N L +L ++HN+L+
Sbjct: 335 IDNQIQGLIPLSFGNLTNLTHLYLRYNQINGSIPPVIWNLKNLIHLRLDHNNLTGVIPSL 394
Query: 322 -----------------GSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVS 364
G IPS+IGNL +L LDLS N I+G IPSQL + ++ +++S
Sbjct: 395 GYLIHLNVFNIRRNRIRGHIPSKIGNLNNLTSLDLSDNLIDGKIPSQLQNLKSLESLNLS 454
Query: 365 KNNLSGVIPK-SVFRVPG--LKWSENNLEVENPVISENAPPPQT-QHFKGNKGKNQKI-- 418
N LSG IP S++ G + +S N+ E P + PP+ H KG G+ + +
Sbjct: 455 HNKLSGHIPPLSIYIHKGSSIDFSHNDFEGHIPHELQFVYPPRVFGHNKGLCGEREGLPH 514
Query: 419 ----VTPLVTIILPMVAFLALI-FGILFVHRRMDEKINPNTREMKKCADEFSIWDYDGRI 473
++ I L + FL+ + GIL + R+ + N K D FS+W+YDG+I
Sbjct: 515 CKRGHKTILIISLSTILFLSFVALGILLLSRK--TRRNQTKATSTKNGDIFSVWNYDGKI 572
Query: 474 TFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLET 528
+E++I+ATEDF IKYCIGTGGYGSVY+AQL +G VVALKKLH E +E +L++
Sbjct: 573 AYEDIIEATEDFDIKYCIGTGGYGSVYKAQLPTGNVVALKKLHGWERDEATYLKS 627
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484068|ref|XP_002271708.2| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 234/535 (43%), Positives = 317/535 (59%), Gaps = 40/535 (7%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNI-LNGSIPLEFGN 90
L G +P G L+ L L L++NR+ G+IPSEIG+L++L+ L+LSYN L+G+IP G
Sbjct: 89 LDGELPVSLGNLTLLVYLSLNFNRINGSIPSEIGNLKNLIHLDLSYNYYLSGAIPSSLGY 148
Query: 91 LKDLYDLRL-QGNKLDGLIPSSIGNLTNLTHLDLSLNQ-LSGRLPQEVGNLKNLVSLFLD 148
LK+L L L L G IPSS+G L NL HLDLS N L G +P +GNL NLV L L+
Sbjct: 149 LKNLIHLDLSHCYSLYGAIPSSLGYLKNLIHLDLSHNSDLYGVIPSSLGNLTNLVYLSLN 208
Query: 149 NNNLTGPIPSTLYHLNQLSTLYLAYNN-LVGPLPKEVGNLKNLDSLLLNRNNLTGPIPST 207
N + G IPS + +L L L L+YN L G +P +G LKNL L L N+L+ IPS+
Sbjct: 209 FNRINGSIPSEIGNLKNLIHLDLSYNYYLSGAIPSSIGYLKNLIHLDLGSNSLSSVIPSS 268
Query: 208 IGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
+G L L+ L L+ NR++G IP IGNL L L LS N L G +P +GNL L L
Sbjct: 269 LGSLTNLEYLYLNFNRINGSIPSEIGNLKNLVQLSLSHNALLGTIPSSLGNLINLTYFHL 328
Query: 268 DRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLS------ 321
N + G IP + G LTNLT L L YNQ+N SIPP + N L +L ++HN+L+
Sbjct: 329 IDNQIQGLIPLSFGNLTNLTHLYLRYNQINGSIPPVIWNLKNLIHLRLDHNNLTGVIPSL 388
Query: 322 -----------------GSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVS 364
G IPS+IGNL +L LDLS N I+G IPSQL + ++ +++S
Sbjct: 389 GYLIHLNVFNIRRNRIRGHIPSKIGNLNNLTSLDLSDNLIDGKIPSQLQNLKSLESLNLS 448
Query: 365 KNNLSGVIPK-SVFRVPG--LKWSENNLEVENPVISENAPPPQT-QHFKGNKGKNQKI-- 418
N LSG IP S++ G + +S N+ E P + PP+ H KG G+ + +
Sbjct: 449 HNKLSGHIPPLSIYIHKGSSIDFSHNDFEGHIPHELQFVYPPRVFGHNKGLCGEREGLPH 508
Query: 419 ----VTPLVTIILPMVAFLALI-FGILFVHRRMDEKINPNTREMKKCADEFSIWDYDGRI 473
++ I L + FL+ + GIL + R+ + N K D FS+W+YDG+I
Sbjct: 509 CKRGHKTILIISLSTILFLSFVALGILLLSRK--TRRNQTKATSTKNGDIFSVWNYDGKI 566
Query: 474 TFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLET 528
+E++I+ATEDF IKYCIGTGGYGSVY+AQL +G VVALKKLH E +E +L++
Sbjct: 567 AYEDIIEATEDFDIKYCIGTGGYGSVYKAQLPTGNVVALKKLHGWERDEATYLKS 621
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110038|ref|XP_002333164.1| predicted protein [Populus trichocarpa] gi|222835017|gb|EEE73466.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 236/620 (38%), Positives = 329/620 (53%), Gaps = 106/620 (17%)
Query: 9 ELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLR 68
+ ++NF+CF NLV + LSG IP + L +L+ L+LS N L G +PS +G+L
Sbjct: 92 KFGKMNFSCFSNLVRLHL-ANHELSGSIPPQISILPQLRYLNLSSNNLAGELPSSLGNLS 150
Query: 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL 128
L+EL+ S N L SIP E GNLK+L L L N G IPS++ +L NL HL + N L
Sbjct: 151 RLVELDFSSNNLTNSIPPELGNLKNLVTLSLSDNIFSGPIPSALCHLENLRHLFMDHNSL 210
Query: 129 SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLK 188
G LP+E+GN+KNL L + N L GPIP T+ L +L +L L+ N + G +P E+GNL
Sbjct: 211 EGALPREIGNMKNLEILDVSYNTLNGPIPRTMGSLAKLRSLILSRNAIDGSIPLEIGNLT 270
Query: 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSL------- 241
NL+ L L N L G IPST+G L L L L N + G IP IGNLT L L
Sbjct: 271 NLEDLNLCSNILVGSIPSTMGLLPNLISLFLCENHIQGSIPLKIGNLTNLEYLVLGSNIL 330
Query: 242 -----------------DLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLT 284
D+SSNQ++G +P E+GNL L L+LD N + G IP ++G L
Sbjct: 331 GGSIPSTSGFLSNLIFVDISSNQINGPIPLEIGNLTNLQYLNLDGNKITGLIPFSLGNLR 390
Query: 285 NLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFI 344
NLT+L L +NQ+N SIP E+ N ++L+ L + N++SGSIP+ +G L LR L L N I
Sbjct: 391 NLTTLYLSHNQINGSIPLEIQNLTKLEELYLYSNNISGSIPTTMGRLTSLRFLSLYDNQI 450
Query: 345 NGTIPSQL-----------------GKIP----------------------------NVS 359
NG+IP ++ G IP N++
Sbjct: 451 NGSIPLEIQNLTKLEELYLYSNNISGSIPTIMGSLRELNLSRNQMNGPISSSLKNCNNLT 510
Query: 360 EVDVSKNNLSGVIPKSVFRVPGLK---WSENNLEVENPV-------------------IS 397
+D+S NNLS IP +++ + L+ +S NNL P+ I+
Sbjct: 511 LLDLSCNNLSEEIPYNLYNLTSLQKANFSYNNLSGPVPLNLKPPFDFYFTCDLLLHGHIT 570
Query: 398 ENAPPPQTQHFKGNK------------GKNQKIVTPLVTIILPMVAFLALIFGILFVHRR 445
++ + F+GNK K +++ + I LP+ + + +
Sbjct: 571 NDSATFKATAFEGNKDLHPDLSNCSLPSKTNRMIHS-IKIFLPISTISLCLLCLGCCYLS 629
Query: 446 MDEKINPNTREMKKCADEFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLS 505
+ P +K D FSIW+YDGRI +E++I ATE+F ++YCIG+GGYGSVYRAQL
Sbjct: 630 RCKATQPEPTSLKN-GDLFSIWNYDGRIAYEDIIAATENFDLRYCIGSGGYGSVYRAQLP 688
Query: 506 SGRVVALKKLHRSETEELAF 525
SG++VALKKLH E EE AF
Sbjct: 689 SGKLVALKKLHHREAEEPAF 708
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065673|ref|XP_002301914.1| predicted protein [Populus trichocarpa] gi|222843640|gb|EEE81187.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 236/620 (38%), Positives = 330/620 (53%), Gaps = 106/620 (17%)
Query: 9 ELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLR 68
+ ++NF+CF NLV + LSG IP + L +L+ L+LS N L G +PS +G+L
Sbjct: 92 KFGKMNFSCFSNLVRLHL-ANHELSGSIPPQISILPQLRYLNLSSNNLAGELPSSLGNLS 150
Query: 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL 128
L+EL+ S N L SIP E GNLK+L L L N G IPS++ +L NL HL + N L
Sbjct: 151 RLVELDFSSNNLTNSIPPELGNLKNLVTLSLSDNIFSGPIPSALCHLENLRHLFMDHNSL 210
Query: 129 SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLK 188
G LP+E+GN+KNL L + N L GPIP T+ L +L +L L+ N + +P E+GNL
Sbjct: 211 EGALPREIGNMKNLEILDVSYNTLNGPIPRTMGSLAKLRSLILSRNAINESIPLEIGNLT 270
Query: 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSL------- 241
NL+ L L N L G IPST+G L L L L N + G IP IGNLT L L
Sbjct: 271 NLEDLNLCSNILVGSIPSTMGLLPNLISLFLCENHIQGSIPLKIGNLTNLEYLVLGSNIL 330
Query: 242 -----------------DLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLT 284
D+SSNQ++G +P E+GNL L L+LD N + G IP ++G L
Sbjct: 331 GGSIPSTSGFLSNLIFVDISSNQINGPIPLEIGNLTNLQYLNLDGNKITGLIPFSLGNLR 390
Query: 285 NLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFI 344
NLT+L L +NQ+N SIP E+ N ++L+ L + N++SGSIP+ +G L LR L L N I
Sbjct: 391 NLTTLYLSHNQINGSIPLEIQNLTKLEELYLYSNNISGSIPTTMGRLTSLRFLSLYDNQI 450
Query: 345 NGTIPSQL-----------------GKIP----------------------------NVS 359
NG+IP ++ G IP N++
Sbjct: 451 NGSIPLEIQNLTKLEELYLYSNNISGSIPTIMGSLRKLNLSRNQMNGPISSSLKNCNNLT 510
Query: 360 EVDVSKNNLSGVIPKSVFRVPGLK---WSENNLEVENPV-------------------IS 397
+D+S NNLS IP +++ + L+ +S NNL P+ I+
Sbjct: 511 LLDLSCNNLSEEIPYNLYNLTSLQKANFSYNNLSGPVPLNLKPPFDFYFTCDLLLHGHIT 570
Query: 398 ENAPPPQTQHFKGNK------------GKNQKIVTPLVTIILPMVAFLALIFGILFVHRR 445
++ + F+GN+ K +++ + I LP+ A + + +
Sbjct: 571 NDSATFKATAFEGNRYLHPDFSNCSLPSKTNRMIHS-IKIFLPITAISLCLLCLGCCYLS 629
Query: 446 MDEKINPNTREMKKCADEFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLS 505
+ P +K D FSIW+YDGRI +E++I ATE+F ++YCIGTGGYG+VYRAQL
Sbjct: 630 RCKATQPEPTSLKN-GDLFSIWNYDGRIAYEDIIAATENFDLRYCIGTGGYGNVYRAQLP 688
Query: 506 SGRVVALKKLHRSETEELAF 525
SG++VALKKLHR E EE AF
Sbjct: 689 SGKLVALKKLHRREAEEPAF 708
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357451683|ref|XP_003596118.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355485166|gb|AES66369.1| Receptor protein kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 227/612 (37%), Positives = 333/612 (54%), Gaps = 104/612 (16%)
Query: 5 GNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEI 64
GN ++L+ L+ + L G++P G LS+L LDLS N L+G +P +
Sbjct: 142 GNLSKLTHLDLS------------ANILKGQVPHSLGNLSKLTHLDLSDNILSGVVPHSL 189
Query: 65 GSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124
G+L L L+LS N+L+G +P GNL L L L N L G++P S+GNL+ LTHLDLS
Sbjct: 190 GNLSKLTHLDLSDNLLSGVVPHSLGNLSKLTHLDLSDNLLSGVVPPSLGNLSKLTHLDLS 249
Query: 125 LNQLSGRLPQEVGNLKNLVSL----------------------FLD--NNNLTGPIPSTL 160
+N L G++P +GNL L L +LD NNNL G IP L
Sbjct: 250 VNLLKGQVPHSLGNLSKLTHLDFSYNSLEGEIPNSLGNHRQLKYLDISNNNLNGSIPHEL 309
Query: 161 YHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLS 220
+ L +L L+ N + G +P +GNL L L++ N+L G IP +IG L L+ L +S
Sbjct: 310 GFIKYLGSLNLSTNRISGDIPPSLGNLVKLTHLVIYGNSLVGKIPPSIGNLRSLESLEIS 369
Query: 221 HNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI 280
N + G IPP +G L LT+L LS N++ G +P +GNLK L+ L + NN+ G +P +
Sbjct: 370 DNYIQGSIPPRLGLLKNLTTLRLSHNRIKGEIPPSLGNLKQLEELDISNNNIQGFLPFEL 429
Query: 281 GYLTNLTSLNLGYNQLNSSIPPEL--------MNCS------------------------ 308
G L NLT+L+L +N+LN ++P L +NCS
Sbjct: 430 GLLKNLTTLDLSHNRLNGNLPISLKNLTQLIYLNCSYNFFTGFLPYNFDQSTKLKVLLLS 489
Query: 309 ----------QLQNLAVNHNSLSGSIPSEIGNLI-HLRQLDLSHNFINGTIPSQLGKIPN 357
L+ L ++HN L G++PS + I ++ +DLSHN I+G IPS+LG
Sbjct: 490 RNSIGGIFPFSLKTLDISHNLLIGTLPSNLFPFIDYVTSMDLSHNLISGEIPSELGYF-- 547
Query: 358 VSEVDVSKNNLSGVIPKSVFRVPGLKWSENNL-----------EVENP-VISENAPPPQT 405
++ + NNL+G IP+S+ V + S N L ++EN + S N P +
Sbjct: 548 -QQLTLRNNNLTGTIPQSLCNVIYVDISYNCLKGPIPICLQTTKMENSDICSFNQFQPWS 606
Query: 406 QHFKGNKGKNQKIVTPLVTIILPMVAFLALIFGILF---VHRRMDEKINPNTREMKKCAD 462
H K NK K+ +V I++PM+ L ++F +L +H +K++ N+ ++K D
Sbjct: 607 PHKKNNKLKH------IVVIVIPMLIILVIVFLLLICFNLHHNSSKKLHGNSTKIKN-GD 659
Query: 463 EFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
F IW+YDG I ++++I+ATEDF ++YCIGTG YGSVY+AQL SG+VVALKKLH E E
Sbjct: 660 MFCIWNYDGMIAYDDIIKATEDFDMRYCIGTGAYGSVYKAQLPSGKVVALKKLHGYEAEV 719
Query: 523 LAFLETSSTDFR 534
+F E+ + R
Sbjct: 720 PSFDESFRNEVR 731
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 599 | ||||||
| TAIR|locus:2167948 | 966 | ERL1 "ERECTA-like 1" [Arabidop | 0.824 | 0.511 | 0.370 | 2.1e-70 | |
| TAIR|locus:2168907 | 966 | XIP1 "XYLEM INTERMIXED WITH PH | 0.834 | 0.517 | 0.367 | 9.2e-68 | |
| TAIR|locus:2020417 | 1101 | AT1G17230 [Arabidopsis thalian | 0.838 | 0.455 | 0.349 | 7.1e-65 | |
| TAIR|locus:2011339 | 1120 | AT1G35710 [Arabidopsis thalian | 0.626 | 0.334 | 0.406 | 9.9e-65 | |
| TAIR|locus:2182855 | 967 | ERL2 "ERECTA-like 2" [Arabidop | 0.824 | 0.510 | 0.344 | 1.8e-64 | |
| TAIR|locus:2160791 | 1102 | AT5G63930 [Arabidopsis thalian | 0.797 | 0.433 | 0.351 | 1.1e-63 | |
| TAIR|locus:2156349 | 1252 | GSO2 "GASSHO 2" [Arabidopsis t | 0.787 | 0.376 | 0.343 | 4e-63 | |
| TAIR|locus:2138268 | 1045 | AT4G08850 [Arabidopsis thalian | 0.816 | 0.467 | 0.332 | 2.8e-62 | |
| TAIR|locus:2182870 | 1192 | EMS1 "EXCESS MICROSPOROCYTES1" | 0.794 | 0.399 | 0.332 | 5.2e-62 | |
| TAIR|locus:2046525 | 1124 | AT2G33170 [Arabidopsis thalian | 0.803 | 0.427 | 0.345 | 5.2e-62 |
| TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 190/513 (37%), Positives = 273/513 (53%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L+G + S+ L+ L D+ N LTGTIP IG+ L++SYN + G IP G L
Sbjct: 203 LTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQITGEIPYNIGFL 262
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
+ + L LQGN+L G IP IG + L LDLS N+L G +P +GNL L+L N
Sbjct: 263 Q-VATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPILGNLSFTGKLYLHGNM 321
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
LTGPIPS L ++++LS L L N LVG +P E+G GPIPS I
Sbjct: 322 LTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSC 381
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
L++ + N L G IP NL LT L+LSSN G +P E+G++ LD L L NN
Sbjct: 382 AALNQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGNN 441
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNL 331
G IP T+G L +L LNL N L+ +P E N +Q + V+ N LSG IP+E+G L
Sbjct: 442 FSGSIPLTLGDLEHLLILNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQL 501
Query: 332 IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP--KSVFRVPGLKWSENNL 389
+L L L++N ++G IP QL + ++VS NNLSG++P K+ R + N
Sbjct: 502 QNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLSGIVPPMKNFSRFAPASFVGNPY 561
Query: 390 EVENPVISENAPPPQTQHFKGNKGKNQKIVTPLVTIILPMVAFLALIFGILFVHRRMDEK 449
N V S P P+++ F ++G L+ I+L ++ L +IF L V++ M +K
Sbjct: 562 LCGNWVGSICGPLPKSRVF--SRGA-------LICIVLGVITLLCMIF--LAVYKSMQQK 610
Query: 450 -INPNTREMKKCADEFSIWDYDGRI-TFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSG 507
I + + + + I D I TF+++++ TE+ + K+ IG G +VY+ L S
Sbjct: 611 KILQGSSKQAEGLTKLVILHMDMAIHTFDDIMRVTENLNEKFIIGYGASSTVYKCALKSS 670
Query: 508 RVVALKKLHRSETEELAFLETS-ST--DFRHYN 537
R +A+K+L+ L ET T RH N
Sbjct: 671 RPIAIKRLYNQYPHNLREFETELETIGSIRHRN 703
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| TAIR|locus:2168907 XIP1 "XYLEM INTERMIXED WITH PHLOEM 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 192/523 (36%), Positives = 270/523 (51%)
Query: 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNI-L 80
+T + T L G IP G L+ L L+LS N L+G IP EIG+L +L +L L YN L
Sbjct: 197 LTHMLLMTCMLHGNIPRSIGNLTSLVDLELSGNFLSGEIPKEIGNLSNLRQLELYYNYHL 256
Query: 81 NGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK 140
GSIP E GNLK+L D+ + ++L G IP SI +L NL L L N L+G +P+ +GN K
Sbjct: 257 TGSIPEEIGNLKNLTDIDISVSRLTGSIPDSICSLPNLRVLQLYNNSLTGEIPKSLGNSK 316
Query: 141 NLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXX 200
L L L +N LTG +P L + + L ++ N L GPLP V
Sbjct: 317 TLKILSLYDNYLTGELPPNLGSSSPMIALDVSENRLSGPLPAHVCKSGKLLYFLVLQNRF 376
Query: 201 TGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLK 260
TG IP T G L R++ NRL G IP + +L +++ +DL+ N LSG +P +GN
Sbjct: 377 TGSIPETYGSCKTLIRFRVASNRLVGTIPQGVMSLPHVSIIDLAYNSLSGPIPNAIGNAW 436
Query: 261 YLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSL 320
L L + N + G IP + + TNL L+L NQL+ IP E+ +L L + N L
Sbjct: 437 NLSELFMQSNRISGVIPHELSHSTNLVKLDLSNNQLSGPIPSEVGRLRKLNLLVLQGNHL 496
Query: 321 SGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVP 380
SIP + NL L LDLS N + G IP L ++ S ++ S N LSG IP S+ R
Sbjct: 497 DSSIPDSLSNLKSLNVLDLSSNLLTGRIPENLSELLPTS-INFSSNRLSGPIPVSLIR-G 554
Query: 381 GL--KWSEN-NLEVENPVISENAPPPQTQHFKGNKGKNQKIVTPLVTIILPMVAFLALIF 437
GL +S+N NL + S + P Q G K K I LV++ + L+
Sbjct: 555 GLVESFSDNPNLCIPPTAGSSDLKFPMCQEPHGKK-KLSSIWAILVSVFI-------LVL 606
Query: 438 GILFVHRRMDEKINPNTREMKKC-ADEFSIWDYDG--RITFEEMIQATEDFHIKYCIGTG 494
G++ + R N E + A F +D RI+F++ + E K +G G
Sbjct: 607 GVIMFYLRQRMSKNRAVIEQDETLASSFFSYDVKSFHRISFDQR-EILESLVDKNIVGHG 665
Query: 495 GYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSSTDFRHYN 537
G G+VYR +L SG VVA+KKL S++ + +++S D H N
Sbjct: 666 GSGTVYRVELKSGEVVAVKKLW-SQSNK----DSASEDKMHLN 703
|
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| TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 7.1e-65, P = 7.1e-65
Identities = 181/518 (34%), Positives = 271/518 (52%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L G IP E G L+ L+ LDLS NRL GTIP E+ L L++L L N L G IP G
Sbjct: 343 LLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFY 402
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
+ L + N L G IP+ L L L N+LSG +P+++ K+L L L +N
Sbjct: 403 SNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQ 462
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
LTG +P L++L L+ L L N L G + ++G TG IP IG L
Sbjct: 463 LTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNL 522
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
+ +S N+L G IP +G+ + LDLS N+ SG + +E+G L YL+ L L N
Sbjct: 523 TKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNR 582
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQ-NLAVNHNSLSGSIPSEIGN 330
L G IP + G LT L L LG N L+ +IP EL + LQ +L ++HN+LSG+IP +GN
Sbjct: 583 LTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGN 642
Query: 331 LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKS-VF-RVPGLKWSENN 388
L L L L+ N ++G IP+ +G + ++ ++S NNL G +P + VF R+ ++ N+
Sbjct: 643 LQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNH 702
Query: 389 LEVENPVISENAP-PPQTQ---HFKGNKGKNQKIVTPLVTIILPMVAFLALIFGILFVHR 444
+ N S P P + ++ N + QKI+T +T I+ FL G+ + +
Sbjct: 703 -GLCNSQRSHCQPLVPHSDSKLNWLINGSQRQKILT--ITCIVIGSVFLITFLGLCWTIK 759
Query: 445 RMDEKINPNTREMKKCADEFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQL 504
R + + K + + G T++ ++ AT +F +G G G+VY+A++
Sbjct: 760 RREPAFVALEDQTKPDVMDSYYFPKKG-FTYQGLVDATRNFSEDVVLGRGACGTVYKAEM 818
Query: 505 SSGRVVALKKLH-RSE--TEELAFLETSST--DFRHYN 537
S G V+A+KKL+ R E + + +F ST RH N
Sbjct: 819 SGGEVIAVKKLNSRGEGASSDNSFRAEISTLGKIRHRN 856
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| TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 9.9e-65, P = 9.9e-65
Identities = 153/376 (40%), Positives = 203/376 (53%)
Query: 1 MDNNGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTI 60
+ N G F NL + LSG IP + G LS+L DLS N LTG I
Sbjct: 84 LTNTGIEGTFQDFPFISLSNLAYVDL-SMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEI 142
Query: 61 PSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120
+G+L++L L L N L IP E GN++ + DL L NKL G IPSS+GNL NL
Sbjct: 143 SPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMV 202
Query: 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPL 180
L L N L+G +P E+GN++++ L L N LTG IPSTL +L L LYL N L G +
Sbjct: 203 LYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVI 262
Query: 181 PKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTS 240
P E+G TG IPS++G L L L L N L G IPP +GN+ +
Sbjct: 263 PPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMID 322
Query: 241 LDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI 300
L+LS+N+L+G +P +GNLK L L L N L G IPP +G + ++ L L N+L SI
Sbjct: 323 LELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSI 382
Query: 301 PPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSE 360
P N L L + N L+G IP E+GN+ + LDLS N + G++P G +
Sbjct: 383 PSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLES 442
Query: 361 VDVSKNNLSGVIPKSV 376
+ + N+LSG IP V
Sbjct: 443 LYLRVNHLSGAIPPGV 458
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| TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 177/514 (34%), Positives = 269/514 (52%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L+G + + L+ L D+ N LTGTIP IG+ L++SYN + G IP G L
Sbjct: 205 LTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVSYNQITGVIPYNIGFL 264
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
+ + L LQGNKL G IP IG + L LDLS N+L+G +P +GNL L+L N
Sbjct: 265 Q-VATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPILGNLSFTGKLYLHGNK 323
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
LTG IP L ++++LS L L N LVG +P E+G G IPS I
Sbjct: 324 LTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFELNLANNNLVGLIPSNISSC 383
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
L++ + N L G +P NL LT L+LSSN G +P E+G++ LD+L L NN
Sbjct: 384 AALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSGNN 443
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNL 331
G IP T+G L +L LNL N LN ++P E N +Q + V+ N L+G IP+E+G L
Sbjct: 444 FSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQIIDVSFNFLAGVIPTELGQL 503
Query: 332 IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP--KSVFRVPGLKWSENNL 389
++ L L++N I+G IP QL +++ +++S NNLSG+IP K+ R + N
Sbjct: 504 QNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPPMKNFTRFSPASFFGNPF 563
Query: 390 EVENPVISENAPP-PQTQHFKGNKGKNQKIVTPLVTIILPMVAFLALIFGILFVHRRMDE 448
N V S P P++Q F ++ ++ ++L + + +IF + V++ +
Sbjct: 564 LCGNWVGSICGPSLPKSQVFT-------RVA--VICMVLGFITLICMIF--IAVYKSKQQ 612
Query: 449 K-INPNTREMKKCADEFSIWDYDGRI-TFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSS 506
K + + + + + + I D I TF+++++ TE+ KY IG G +VY+ +
Sbjct: 613 KPVLKGSSKQPEGSTKLVILHMDMAIHTFDDIMRVTENLDEKYIIGYGASSTVYKCTSKT 672
Query: 507 GRVVALKKLHRSETEELAFLETS-ST--DFRHYN 537
R +A+K+++ ET T RH N
Sbjct: 673 SRPIAIKRIYNQYPSNFREFETELETIGSIRHRN 706
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| TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 657 (236.3 bits), Expect = 1.1e-63, P = 1.1e-63
Identities = 173/492 (35%), Positives = 255/492 (51%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L+G IP E L L LDLS N LTG IP LR L L L N L+G+IP + G
Sbjct: 349 LTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWY 408
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
DL+ L + N L G IPS + +N+ L+L N LSG +P + K LV L L NN
Sbjct: 409 SDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNN 468
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
L G PS L ++ + L N G +P+EVG TG +P IG L
Sbjct: 469 LVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGML 528
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
+ L L +S N+L G +P I N L LD+ N SG LP EVG+L L+ L L NN
Sbjct: 529 SQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNN 588
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVN--HNSLSGSIPSEIG 329
L G IP +G L+ LT L +G N N SIP EL + + LQ +A+N +N L+G IP E+
Sbjct: 589 LSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQ-IALNLSYNKLTGEIPPELS 647
Query: 330 NLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNL 389
NL+ L L L++N ++G IPS + ++ + S N+L+G IP + R + N
Sbjct: 648 NLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP--LLRNISMSSFIGNE 705
Query: 390 EVENPVISE--NAPPPQTQHFKGNKG--KNQKIVTPLVTIILPMVAFLALIFGILFVHRR 445
+ P +++ P G G ++ KI+ + ++ V+ L LI I+++ RR
Sbjct: 706 GLCGPPLNQCIQTQPFAPSQSTGKPGGMRSSKIIA-ITAAVIGGVS-LMLIALIVYLMRR 763
Query: 446 MDEKINPNTREMKKCADEFSIW--DYDGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQ 503
+ + ++ + I+ +G TF++++ AT++F + +G G G+VY+A
Sbjct: 764 PVRTVASSAQDGQPSEMSLDIYFPPKEG-FTFQDLVAATDNFDESFVVGRGACGTVYKAV 822
Query: 504 LSSGRVVALKKL 515
L +G +A+KKL
Sbjct: 823 LPAGYTLAVKKL 834
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| TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 4.0e-63, P = 4.0e-63
Identities = 171/498 (34%), Positives = 268/498 (53%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYN-ILNGSIPLEFGN 90
L G IP+ G ++ V+DL+ N+L+G+IPS G L LEL + YN L G++P N
Sbjct: 493 LVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLT-ALELFMIYNNSLQGNLPDSLIN 551
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
LK+L + NK +G I G+ + L+ D++ N G +P E+G NL L L N
Sbjct: 552 LKNLTRINFSSNKFNGSISPLCGSSSYLS-FDVTENGFEGDIPLELGKSTNLDRLRLGKN 610
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGF 210
TG IP T +++LS L ++ N+L G +P E+G +G IP+ +G
Sbjct: 611 QFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK 670
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
L LL EL+LS N+ G +P I +LT + +L L N L+G +P+E+GNL+ L++L+L+ N
Sbjct: 671 LPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEEN 730
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQN-LAVNHNSLSGSIPSEIG 329
L GP+P TIG L+ L L L N L IP E+ LQ+ L +++N+ +G IPS I
Sbjct: 731 QLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTIS 790
Query: 330 NLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNL 389
L L LDLSHN + G +P Q+G + ++ +++S NNL G + K R W +
Sbjct: 791 TLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSR-----WQADAF 845
Query: 390 EVENPVISENAPPPQTQHFKGNKGKNQKIVTPLVTIILPMVAFLALI-----FGILFVHR 444
V N + +P H KNQ+ ++P +I+ ++ LA I ILF +
Sbjct: 846 -VGNAGLC-GSP---LSHCNRAGSKNQRSLSPKTVVIISAISSLAAIALMVLVIILFFKQ 900
Query: 445 RMD--EKINP-----NTREMKKCADEFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYG 497
D +K+ ++ A FS I ++++++AT + ++ IG+GG G
Sbjct: 901 NHDLFKKVRGGNSAFSSNSSSSQAPLFSNGGAKSDIKWDDIMEATHYLNEEFMIGSGGSG 960
Query: 498 SVYRAQLSSGRVVALKKL 515
VY+A+L +G +A+KK+
Sbjct: 961 KVYKAELKNGETIAVKKI 978
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| TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 2.8e-62, P = 2.8e-62
Identities = 165/496 (33%), Positives = 257/496 (51%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L+G IP E G + + L++S N+LTG +P G L L L L N L+G IP N
Sbjct: 322 LNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANS 381
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
+L L+L N G +P +I L +L L N G +P+ + + K+L+ + N+
Sbjct: 382 TELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNS 441
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
+G I L+ + L+ NN G L TG IP I +
Sbjct: 442 FSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNM 501
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
L +L LS NR+ G +P +I N+ ++ L L+ N+LSG +P + L L+ L L N
Sbjct: 502 TQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNR 561
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNL 331
IPPT+ L L +NL N L+ +IP L SQLQ L +++N L G I S+ +L
Sbjct: 562 FSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSL 621
Query: 332 IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP-KSVFRVPGLKWSENNLE 390
+L +LDLSHN ++G IP + ++ VDVS NNL G IP + FR E N +
Sbjct: 622 QNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKD 681
Query: 391 VENPVISENAPPPQ--TQHFKGNKGKNQKIVTPLVTIILPMVAFLALIFGILFVHRRMDE 448
+ V + P T K +K +N I+ LV II ++ L++ GI R+ +
Sbjct: 682 LCGSVNTTQGLKPCSITSSKKSHKDRNL-IIYILVPIIGAII-ILSVCAGIFICFRKRTK 739
Query: 449 KINPNTREMKKCADEFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGR 508
+I +T + + + SI+ +DG++ ++E+I+AT +F KY IGTGG+G VY+A+L +
Sbjct: 740 QIEEHT-DSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA- 797
Query: 509 VVALKKLHRSETEELA 524
++A+KKL+ + ++
Sbjct: 798 IMAVKKLNETTDSSIS 813
|
|
| TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 5.2e-62, P = 5.2e-62
Identities = 176/530 (33%), Positives = 268/530 (50%)
Query: 33 SGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLK 92
+G IP + L SYNRL G +P+EIG+ L L LS N L G IP E G L
Sbjct: 437 TGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLT 496
Query: 93 DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNL 152
L L L N G IP +G+ T+LT LDL N L G++P ++ L L L L NNL
Sbjct: 497 SLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNL 556
Query: 153 TGPIPS---TLYH---LNQLSTLY------LAYNNLVGPLPKEVGXXXXXXXXXXXXXXX 200
+G IPS +H + LS L L+YN L GP+P+E+G
Sbjct: 557 SGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHL 616
Query: 201 TGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLK 260
+G IP+++ L L L LS N L G IP +GN L L+L++NQL+G +P G L
Sbjct: 617 SGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLG 676
Query: 261 YLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSL 320
L L+L +N L GP+P ++G L LT ++L +N L+ + EL +L L + N
Sbjct: 677 SLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKF 736
Query: 321 SGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKS-VFRV 379
+G IPSE+GNL L LD+S N ++G IP+++ +PN+ ++++KNNL G +P V +
Sbjct: 737 TGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQD 796
Query: 380 PGLKWSENNLEVENPVISENAPPPQTQHFKGNKGKNQKIVTPLVTIILPMVAFLALIFGI 439
P N E+ V+ + +G K ++ + L M+ F ++F
Sbjct: 797 PSKALLSGNKELCGRVVGSDCK------IEGTKLRSAWGIAGL------MLGFTIIVFVF 844
Query: 440 LFVHRR--MDEKI----NPNTRE---MKKCADEFSIWDYDG------------------- 471
+F RR M +++ +P E +K D+ +++ G
Sbjct: 845 VFSLRRWAMTKRVKQRDDPERMEESRLKGFVDQ-NLYFLSGSRSREPLSINIAMFEQPLL 903
Query: 472 RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE 521
++ ++++AT+ F K IG GG+G+VY+A L + VA+KKL ++T+
Sbjct: 904 KVRLGDIVEATDHFSKKNIIGDGGFGTVYKACLPGEKTVAVKKLSEAKTQ 953
|
|
| TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 5.2e-62, P = 5.2e-62
Identities = 170/492 (34%), Positives = 250/492 (50%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L+G IP+E L L LDLS N LTG IP +L + +L L +N L+G IP G
Sbjct: 361 LTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLY 420
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
L+ + N+L G IP I +NL L+L N++ G +P V K+L+ L + N
Sbjct: 421 SPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNR 480
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
LTG P+ L L LS + L N GPLP E+G + +P+ I L
Sbjct: 481 LTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKL 540
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
+ L +S N L GPIP I N L LDLS N G LP E+G+L L+ L L N
Sbjct: 541 SNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENR 600
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVN--HNSLSGSIPSEIG 329
G IP TIG LT+LT L +G N + SIPP+L S LQ +A+N +N SG IP EIG
Sbjct: 601 FSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQ-IAMNLSYNDFSGEIPPEIG 659
Query: 330 NLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKS-VFRVPGLKWSENN 388
NL L L L++N ++G IP+ + ++ + S NNL+G +P + +F+ L N
Sbjct: 660 NLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGN 719
Query: 389 LEVENPVISENAPP----PQTQHFKGNKGKNQKIVTPLVTIILPMVAFLALIFGILFVHR 444
+ + P P K + +I+ +V+ ++ ++ L + + F+ R
Sbjct: 720 KGLCGGHLRSCDPSHSSWPHISSLKAGSARRGRIII-IVSSVIGGISLLLIAIVVHFL-R 777
Query: 445 RMDEKINPNTREMKKCADEFSIWDYDG-RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQ 503
E P + + E I+ R T +++++AT+ FH Y +G G G+VY+A
Sbjct: 778 NPVEPTAPYVHDKEPFFQESDIYFVPKERFTVKDILEATKGFHDSYIVGRGACGTVYKAV 837
Query: 504 LSSGRVVALKKL 515
+ SG+ +A+KKL
Sbjct: 838 MPSGKTIAVKKL 849
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 599 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-66 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-65 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-64 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-61 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-58 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-49 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-46 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-28 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-19 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 7e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-15 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-14 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-11 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 9e-11 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-09 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-06 | |
| PRK15370 | 754 | PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl | 3e-06 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 4e-05 | |
| cd05122 | 253 | cd05122, PKc_STE, Catalytic domain of STE family P | 5e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 9e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-04 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 2e-04 | |
| cd07838 | 287 | cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc | 2e-04 | |
| cd06612 | 256 | cd06612, STKc_MST1_2, Catalytic domain of the Prot | 3e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 5e-04 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 6e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 8e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| pfam00069 | 260 | pfam00069, Pkinase, Protein kinase domain | 0.001 | |
| cd07840 | 287 | cd07840, STKc_CDK9_like, Catalytic domain of Cycli | 0.002 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.003 | |
| cd07835 | 283 | cd07835, STKc_CDK1_like, Catalytic domain of Cycli | 0.003 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 233 bits (595), Expect = 2e-66
Identities = 146/394 (37%), Positives = 202/394 (51%), Gaps = 28/394 (7%)
Query: 28 GTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE 87
G L G+IP+ L+ L+ L L+ N+L G IP E+G ++ L + L YN L+G IP E
Sbjct: 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231
Query: 88 FGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFL 147
G L L L L N L G IPSS+GNL NL +L L N+LSG +P + +L+ L+SL L
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291
Query: 148 DNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPST 207
+N+L+G IP + L L L+L NN G +P + +L L L L N +G IP
Sbjct: 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351
Query: 208 IGFLNLLDELRLSHNRLDGPIPPTI---GNLTYL----TSLD-----------------L 243
+G N L L LS N L G IP + GNL L SL+ L
Sbjct: 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411
Query: 244 SSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPE 303
N SG LP E L + L + NNL G I + +L L+L N+ + P+
Sbjct: 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL-PD 470
Query: 304 LMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDV 363
+L+NL ++ N SG++P ++G+L L QL LS N ++G IP +L + +D+
Sbjct: 471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530
Query: 364 SKNNLSGVIPKSVFRVP---GLKWSENNLEVENP 394
S N LSG IP S +P L S+N L E P
Sbjct: 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 1e-65
Identities = 147/362 (40%), Positives = 203/362 (56%), Gaps = 6/362 (1%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSL-RDLLELNLSYNILNGSIPLEFGN 90
+SG+I S L ++ ++LS N+L+G IP +I + L LNLS N GSIP G+
Sbjct: 81 ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GS 138
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
+ +L L L N L G IP+ IG+ ++L LDL N L G++P + NL +L L L +N
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGF 210
L G IP L + L +YL YNNL G +P E+G L +L+ L L NNLTGPIPS++G
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
L L L L N+L GPIPP+I +L L SLDLS N LSG +P V L+ L+ L L N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN 330
N G IP + L L L L N+ + IP L + L L ++ N+L+G IP + +
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378
Query: 331 LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVP---GLKWSEN 387
+L +L L N + G IP LG ++ V + N+ SG +P ++P L S N
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438
Query: 388 NL 389
NL
Sbjct: 439 NL 440
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 227 bits (579), Expect = 4e-64
Identities = 142/370 (38%), Positives = 198/370 (53%), Gaps = 7/370 (1%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
+G IP G++ L+ LDLS N L+G IP++IGS L L+L N+L G IP NL
Sbjct: 130 FTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
L L L N+L G IP +G + +L + L N LSG +P E+G L +L L L NN
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFL 211
LTGPIPS+L +L L L+L N L GP+P + +L+ L SL L+ N+L+G IP + L
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
L+ L L N G IP + +L L L L SN+ SG +P+ +G L L L NN
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNL 331
L G IP + NL L L N L IP L C L+ + + NS SG +PSE L
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427
Query: 332 IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEV 391
+ LD+S+N + G I S+ +P++ + +++N G +P S F L+ NL++
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLE----NLDL 482
Query: 392 ENPVISENAP 401
S P
Sbjct: 483 SRNQFSGAVP 492
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 3e-61
Identities = 134/342 (39%), Positives = 192/342 (56%), Gaps = 1/342 (0%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L+G IPS G L L+ L L N+L+G IP I SL+ L+ L+LS N L+G IP L
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
++L L L N G IP ++ +L L L L N+ SG +P+ +G NL L L NN
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFL 211
LTG IP L L L L N+L G +PK +G ++L + L N+ +G +PS L
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
L+ L +S+N L G I ++ L L L+ N+ G LP G+ K L++L L RN
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQ 486
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNL 331
G +P +G L+ L L L N+L+ IP EL +C +L +L ++HN LSG IP+ +
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546
Query: 332 IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373
L QLDLS N ++G IP LG + ++ +V++S N+L G +P
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 7e-58
Identities = 138/334 (41%), Positives = 187/334 (55%), Gaps = 3/334 (0%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQGN 102
SR+ +DLS ++G I S I L + +NLS N L+G IP + F L L L N
Sbjct: 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
G IP G++ NL LDLS N LSG +P ++G+ +L L L N L G IP++L +
Sbjct: 129 NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHN 222
L L L LA N LVG +P+E+G +K+L + L NNL+G IP IG L L+ L L +N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246
Query: 223 RLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGY 282
L GPIP ++GNL L L L N+LSG +P + +L+ L SL L N+L G IP +
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306
Query: 283 LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
L NL L+L N IP L + +LQ L + N SG IP +G +L LDLS N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366
Query: 343 FINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSV 376
+ G IP L N+ ++ + N+L G IPKS+
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 1e-49
Identities = 113/286 (39%), Positives = 162/286 (56%), Gaps = 8/286 (2%)
Query: 114 NLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL-NQLSTLYLA 172
N + + +DLS +SG++ + L + ++ L NN L+GPIP ++ + L L L+
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126
Query: 173 YNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI 232
NN G +P+ G++ NL++L L+ N L+G IP+ IG + L L L N L G IP ++
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184
Query: 233 GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG 292
NLT L L L+SNQL G +PRE+G +K L + L NNL G IP IG LT+L L+L
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 352
YN L IP L N LQ L + N LSG IP I +L L LDLS N ++G IP +
Sbjct: 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304
Query: 353 GKIPNVSEVDVSKNNLSGVIPKSVFRVPGLK----WSENNLEVENP 394
++ N+ + + NN +G IP ++ +P L+ WS N E P
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS-NKFSGEIP 349
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 5e-46
Identities = 108/296 (36%), Positives = 153/296 (51%), Gaps = 1/296 (0%)
Query: 31 FLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGN 90
LSG IP L L++L L N TG IP + SL L L L N +G IP G
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
+L L L N L G IP + + NL L L N L G +P+ +G ++L + L +N
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGF 210
+ +G +PS L + L ++ NNL G + ++ +L L L RN G +P + G
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
L + L LS N+ G +P +G+L+ L L LS N+LSG +P E+ + K L SL L N
Sbjct: 475 KRL-ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPS 326
L G IP + + L+ L+L NQL+ IP L N L + ++HN L GS+PS
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-28
Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 1/180 (0%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
SG +PSE L + LD+S N L G I S + L L+L+ N G +P FG+
Sbjct: 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS- 474
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
K L +L L N+ G +P +G+L+ L L LS N+LSG +P E+ + K LVSL L +N
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFL 211
L+G IP++ + LS L L+ N L G +PK +GN+++L + ++ N+L G +PST FL
Sbjct: 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 3e-19
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 6/168 (3%)
Query: 231 TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLT-NLTSL 289
T N + + S+DLS +SG + + L Y+ +++L N L GPIP I + +L L
Sbjct: 64 TCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYL 123
Query: 290 NLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIP 349
NL N SIP + L+ L +++N LSG IP++IG+ L+ LDL N + G IP
Sbjct: 124 NLSNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181
Query: 350 SQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENNLEVENP 394
+ L + ++ + ++ N L G IP+ + ++ LKW NNL E P
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229
|
Length = 968 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 7e-17
Identities = 89/248 (35%), Positives = 129/248 (52%), Gaps = 11/248 (4%)
Query: 49 LDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLI 108
LDL+ NRL I SE+ L +L L+L N + PL +L +L L NK+ +
Sbjct: 98 LDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESL 155
Query: 109 PSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLST 168
PS + NL NL +LDLS N LS LP+ + NL NL +L L N ++ +P + L+ L
Sbjct: 156 PSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEE 213
Query: 169 LYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPI 228
L L+ N+++ L + NLKNL L L+ N L +P +IG L+ L+ L LS+N++
Sbjct: 214 LDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--S 269
Query: 229 PPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTS 288
++G+LT L LDLS N LS LP L L L N L+ + + L +
Sbjct: 270 ISSLGSLTNLRELDLSGNSLSNALPL---IALLLLLLELLLNLLLTLKALELKLNSILLN 326
Query: 289 LNLGYNQL 296
N+ N
Sbjct: 327 NNILSNGE 334
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-16
Identities = 39/107 (36%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 237 YLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQL 296
++ L L + L G +P ++ L++L S++L N++ G IPP++G +T+L L+L YN
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 297 NSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN-LIHLRQLDLSHN 342
N SIP L + L+ L +N NSLSG +P+ +G L+H + + N
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 4e-16
Identities = 47/111 (42%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 49 LDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLI 108
L L L G IP++I LR L +NLS N + G+IP G++ L L L N +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 109 PSSIGNLTNLTHLDLSLNQLSGRLPQEVGN--LKNLVSLFLDNNNLTGPIP 157
P S+G LT+L L+L+ N LSGR+P +G L F DN L G IP
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG-IP 532
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 6e-16
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 261 YLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSL 320
++D L LD L G IP I L +L S+NL N + +IPP L + + L+ L +++NS
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 321 SGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIP 356
+GSIP +G L LR L+L+ N ++G +P+ LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 37/92 (40%), Positives = 54/92 (58%)
Query: 190 LDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLS 249
+D L L+ L G IP+ I L L + LS N + G IPP++G++T L LDLS N +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 250 GLLPREVGNLKYLDSLSLDRNNLIGPIPPTIG 281
G +P +G L L L+L+ N+L G +P +G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 36/82 (43%), Positives = 49/82 (59%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L G IP++ L L+ ++LS N + G IP +GS+ L L+LSYN NGSIP G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 92 KDLYDLRLQGNKLDGLIPSSIG 113
L L L GN L G +P+++G
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 4e-13
Identities = 35/88 (39%), Positives = 53/88 (60%)
Query: 73 LNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 132
L L L G IP + L+ L + L GN + G IP S+G++T+L LDLS N +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 133 PQEVGNLKNLVSLFLDNNNLTGPIPSTL 160
P+ +G L +L L L+ N+L+G +P+ L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 9e-13
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 176 LVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNL 235
L G +P ++ L++L S+ L+ N++ G IP ++G + L+ L LS+N +G IP ++G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 236 TYLTSLDLSSNQLSGLLPREVG 257
T L L+L+ N LSG +P +G
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 4e-11
Identities = 32/89 (35%), Positives = 53/89 (59%)
Query: 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPL 180
L L L G +P ++ L++L S+ L N++ G IP +L + L L L+YN+ G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 181 PKEVGNLKNLDSLLLNRNNLTGPIPSTIG 209
P+ +G L +L L LN N+L+G +P+ +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 9e-11
Identities = 67/191 (35%), Positives = 104/191 (54%), Gaps = 8/191 (4%)
Query: 180 LPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTY-L 238
+ + NL L SL LN N L I S + L L L L +N + IPP IG L L
Sbjct: 85 GSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNL 142
Query: 239 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 298
LDLS N++ LP + NL L +L L N + +P + L+NL +L+L N++ S
Sbjct: 143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLS-FNDLSDLPKLLSNLSNLNNLDLSGNKI-S 199
Query: 299 SIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNV 358
+PPE+ S L+ L +++NS+ + S + NL +L L+LS+N + +P +G + N+
Sbjct: 200 DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL 257
Query: 359 SEVDVSKNNLS 369
+D+S N +S
Sbjct: 258 ETLDLSNNQIS 268
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 87/247 (35%), Positives = 130/247 (52%), Gaps = 11/247 (4%)
Query: 107 LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQL 166
L+PSS+ L +L L S S + + NL L SL L+ N L I S L L L
Sbjct: 61 LLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNL 118
Query: 167 STLYLAYNNLVGPLPKEVGNLK-NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD 225
++L L NN + +P +G LK NL L L+ N + +PS + L L L LS N L
Sbjct: 119 TSLDL-DNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS 176
Query: 226 GPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTN 285
+P + NL+ L +LDLS N++S LP E+ L L+ L L N++I + ++ L N
Sbjct: 177 D-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN 233
Query: 286 LTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
L+ L L N+L + N S L+ L +++N +S S +G+L +LR+LDLS N ++
Sbjct: 234 LSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLS 290
Query: 346 GTIPSQL 352
+P
Sbjct: 291 NALPLIA 297
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 313 LAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVI 372
L +++ L G IP++I L HL+ ++LS N I G IP LG I ++ +D+S N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 373 PKSVFRVPGLK 383
P+S+ ++ L+
Sbjct: 483 PESLGQLTSLR 493
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 31 FLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFG 89
+ G IP G+++ L+VLDLSYN G+IP +G L L LNL+ N L+G +P G
Sbjct: 453 SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
L L L G IP+ I L +L ++LS N + G +P +G++ +L L L N+ G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 157 PSTLYHLNQLSTLYLAYNNLVGPLPKEVG 185
P +L L L L L N+L G +P +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 72/238 (30%), Positives = 110/238 (46%), Gaps = 8/238 (3%)
Query: 35 RIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94
+PS L LK LDLS+N L+ +P + +L +L L+LS N ++ +P E L L
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL 211
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG 154
+L L N + + SS+ NL NL+ L+LS N+L LP+ +GNL NL +L L NN ++
Sbjct: 212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS- 268
Query: 155 PIPSTLYHLNQLSTLYLAYNNLVGPLP--KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLN 212
S+L L L L L+ N+L LP + L L LL ++I N
Sbjct: 269 -SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNN 327
Query: 213 LLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
+ + + I ++ NL L + SN ++ LD + N
Sbjct: 328 NILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVKKHVN 385
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNL 152
L L L N+L + + L NL LDLS N L+ P+ L +L SL L NNL
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 7/174 (4%)
Query: 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLT 287
+P ++ L L L S + NL L SL L+ N L I + LTNLT
Sbjct: 62 LPSSLSRLLSLDLLSPSGISSLDGS-ENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLT 119
Query: 288 SLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGT 347
SL+L N + P + S L+ L ++ N + S+PS + NL +L+ LDLS N ++
Sbjct: 120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-D 177
Query: 348 IPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLK--WSENNLEVENPVISEN 399
+P L + N++ +D+S N +S +P + + L+ NN +E N
Sbjct: 178 LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSN 230
|
Length = 394 |
| >gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 79/257 (30%), Positives = 119/257 (46%), Gaps = 41/257 (15%)
Query: 140 KNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLK-NLDSLLLNRN 198
N L L LT IP+ Q++TL L N L LP+ NL+ N+ +L N N
Sbjct: 178 NNKTELRLKILGLT-TIPA--CIPEQITTLILDNNELKS-LPE---NLQGNIKTLYANSN 230
Query: 199 NLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL---LPRE 255
LT IP+T+ + + E+ LS NR+ +P + + L SLDL N++S L LP E
Sbjct: 231 QLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLPEE 284
Query: 256 VGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAV 315
L+YL L +P I T+L + L ++PP L+ L
Sbjct: 285 ---LRYLSVYDNSIRTLPAHLPSGI---THLNVQSNSLTALPETLPP------GLKTLEA 332
Query: 316 NHNSLS---GSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVI 372
N+L+ S+P E L+ LD+S N I +P L P ++ +DVS+N L+ +
Sbjct: 333 GENALTSLPASLPPE------LQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLP 383
Query: 373 PKSVFRVPGLKWSENNL 389
+ ++ S NNL
Sbjct: 384 ENLPAALQIMQASRNNL 400
|
Length = 754 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 75/289 (25%), Positives = 131/289 (45%), Gaps = 54/289 (18%)
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK---NLVSLFLD 148
++L L++QG+KL+ L + +LT L ++DL + S L +E+ +L NL +L L
Sbjct: 611 ENLVKLQMQGSKLEKLW-DGVHSLTGLRNIDL---RGSKNL-KEIPDLSMATNLETLKLS 665
Query: 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLN---RNNLTGPIP 205
+ + +PS++ +LN+L L ++ + LP + NLK+L L L+ R I
Sbjct: 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS 724
Query: 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSL 265
+ I +L+ LDE + + P + NL L ++ S +L
Sbjct: 725 TNISWLD-LDETAIE----EFPSNLRLENLDELILCEMKSEKL----------------- 762
Query: 266 SLDRNNLIGP----IPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLS 321
+R + P + P+ LT L L +P + N +L++L + +
Sbjct: 763 -WERVQPLTPLMTMLSPS------LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815
Query: 322 GSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSG 370
++P+ I NL L LDLS S+L P++S ++S NLS
Sbjct: 816 ETLPTGI-NLESLESLDLSGC-------SRLRTFPDIS-TNISDLNLSR 855
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 18/75 (24%)
Query: 484 DFHIKYCIGTGGYGSVYRA-QLSSGRVVALKKL-HRSETE------ELAFLETSSTDFRH 535
F I IG GG+G VY+A +G+ VA+K + S+ + E+ L+ +H
Sbjct: 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILK----KCKH 56
Query: 536 ------YNSHTDNDD 544
Y S+ D+
Sbjct: 57 PNIVKYYGSYLKKDE 71
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 9e-05
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 117 NLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNN 175
NL LDLS N+L+ +P L NL L L NNLT P L L +L L+ NN
Sbjct: 1 NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 176 L 176
L
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 26/60 (43%), Positives = 28/60 (46%)
Query: 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKL 104
LK LDLS NRLT L +L L+LS N L P F L L L L GN L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 485 FHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+ I +G G +G VY A+ +G++VA+K + + + ++
Sbjct: 1 YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKK 39
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 491 IGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
IG G YG+VY+A+ L++GR VALKK+ +EE
Sbjct: 7 IGEGAYGTVYKARDLNTGRFVALKKVRVPLSEE 39
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287 |
| >gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRA-QLSSGRVVALKKL 515
E F I +G G YGSVY+A +G+VVA+K +
Sbjct: 3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVV 36
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 5e-04
Identities = 24/59 (40%), Positives = 27/59 (45%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
L L LS+NRL L L LDLS N L+ + P L L SL L NNL
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 59/215 (27%), Positives = 90/215 (41%), Gaps = 24/215 (11%)
Query: 18 FPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSY 77
L + G++ L IP + A + L+ L LS +PS I L L +L++S
Sbjct: 633 LTGLRNIDLRGSKNLK-EIPDLSMATN-LETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690
Query: 78 NILNGSIPLEFGNLKDLYDLRLQG-NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV 136
+P NLK LY L L G ++L S TN++ LDL + P +
Sbjct: 691 CENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS----TNISWLDLDETAIE-EFPSNL 744
Query: 137 GNLKNLVSLFL---------DNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNL 187
L+NL L L + P+ + L L+ L+L+ + LP + NL
Sbjct: 745 -RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP--SLTRLFLSDIPSLVELPSSIQNL 801
Query: 188 KNLDSL-LLNRNNLTGPIPSTIGFLNLLDELRLSH 221
L+ L + N NL +P+ I L+ L LS
Sbjct: 802 HKLEHLEIENCINLE-TLPTGINL-ESLESLDLSG 834
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 8e-04
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 165 QLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNR 223
L +L L+ N L +P L NL L L+ NNLT P L L L LS N
Sbjct: 1 NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 224 L 224
L
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.001
Identities = 25/60 (41%), Positives = 26/60 (43%)
Query: 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQL 248
NL SL L+ N LT L L L LS N L P L L SLDLS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 485 FHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+ + +G+G +G+VY+A+ +G++VA+K L + +
Sbjct: 1 YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKS 39
|
Length = 260 |
| >gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 491 IGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAF 525
IG G YG VY+A+ +G +VALKK+ R E E+ F
Sbjct: 7 IGEGTYGQVYKARNKKTGELVALKKI-RMENEKEGF 41
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.003
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 285 NLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
NL SL+L N+L + IP L+ L ++ N+L+ P L LR LDLS N
Sbjct: 1 NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
|
Length = 60 |
| >gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 491 IGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
IG G YG VY+A+ +G +VALKK+ R ETE+
Sbjct: 7 IGEGTYGVVYKARDKLTGEIVALKKI-RLETED 38
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 44 SRLKVLDLSYNRLTGT----IPSEIGSLRDLLELNLSYNILNGS-IPLEFGNLKD---LY 95
L+ L L NRL G + + + RDL ELNL+ N + + I LK L
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196
Query: 96 DLRLQGNKL----DGLIPSSIGNLTNLTHLDLSLNQLSGR-----LPQEVGNLKNLVSLF 146
L L N L + ++ +L +L L+L N L+ + +L++L
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256
Query: 147 LDNNNLT 153
L N++T
Sbjct: 257 LSCNDIT 263
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 599 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.96 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 99.95 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.94 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.93 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.91 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.85 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.82 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.81 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.81 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.81 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.8 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.78 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.77 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.77 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.77 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.75 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.73 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.71 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.69 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.69 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.69 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 99.67 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 99.65 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.64 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.63 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.62 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 99.62 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.61 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 99.6 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.6 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.59 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.58 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.57 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.56 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 99.55 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.55 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.54 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.54 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 99.53 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 99.53 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.53 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.53 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.52 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.51 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.51 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.51 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.5 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.5 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.5 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.5 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.5 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.5 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.5 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 99.5 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.5 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.5 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 99.49 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.49 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.49 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.49 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.48 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.48 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.48 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.48 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 99.48 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 99.48 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.48 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.47 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.47 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.47 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.47 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.47 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.47 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 99.47 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.47 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.46 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.46 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 99.46 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 99.46 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.46 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.46 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.46 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.46 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.46 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.45 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.45 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.45 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.45 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.45 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.45 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.45 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.45 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.45 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.45 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.45 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.45 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.45 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 99.45 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.45 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.45 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.45 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.45 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.44 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.44 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.44 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 99.44 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.44 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.44 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 99.44 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.44 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.44 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.43 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 99.43 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.43 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.43 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.43 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.43 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 99.43 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.43 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.43 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.43 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.43 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.43 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.43 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.43 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.43 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.43 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.43 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.42 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.42 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 99.42 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.42 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.42 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.42 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 99.42 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.42 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.42 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 99.42 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.42 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.42 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.42 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.42 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.41 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.41 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.41 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.41 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 99.41 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.41 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.41 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.41 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.41 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 99.4 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.4 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.4 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.4 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 99.4 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 99.4 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.4 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.4 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 99.4 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.4 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.4 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.4 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.4 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.4 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.4 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.39 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.39 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.39 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.39 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.39 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.39 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.39 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 99.39 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.39 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.39 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.38 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.38 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.38 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 99.38 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.38 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.38 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.38 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.38 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.38 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.38 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.38 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 99.38 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.38 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.38 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.37 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.37 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 99.37 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.37 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.37 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.37 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.37 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.37 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 99.37 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 99.37 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.37 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.37 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.37 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 99.37 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 99.37 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.36 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.36 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 99.36 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 99.36 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 99.36 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.36 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 99.36 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 99.36 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.36 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.36 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.36 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.36 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.36 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.35 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.35 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.35 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 99.35 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.35 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.35 | |
| PTZ00284 | 467 | protein kinase; Provisional | 99.35 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.35 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 99.35 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.35 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.35 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 99.35 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.35 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.35 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 99.35 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.34 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.34 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.34 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.34 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.34 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 99.34 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 99.34 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.34 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.34 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 99.34 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 99.34 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.34 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.34 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 99.34 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.34 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 99.34 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.34 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.34 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.33 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.33 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.33 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.33 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.33 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 99.33 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.33 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.33 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.33 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 99.33 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.33 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.33 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 99.33 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.32 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.32 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 99.32 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.32 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.32 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.32 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 99.32 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.32 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.32 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 99.32 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 99.32 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.32 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.32 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.32 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.32 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.32 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 99.32 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.31 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.31 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 99.31 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.31 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.31 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 99.31 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 99.31 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 99.31 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.31 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.31 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 99.31 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.31 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.31 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.31 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.31 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.3 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 99.3 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 99.3 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.3 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 99.3 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 99.3 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 99.3 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 99.3 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 99.3 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 99.29 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 99.29 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.29 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 99.29 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 99.29 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.29 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 99.28 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 99.28 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.28 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 99.28 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.28 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 99.28 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 99.28 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 99.28 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.28 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.27 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 99.27 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 99.27 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 99.27 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 99.27 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.27 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.27 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.27 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.26 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 99.26 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 99.26 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 99.26 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 99.26 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.26 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.26 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 99.25 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 99.25 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.25 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.25 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.25 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 99.25 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 99.25 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 99.25 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 99.24 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 99.24 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.24 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 99.24 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.24 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.24 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 99.24 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 99.24 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 99.23 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 99.23 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 99.23 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 99.23 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 99.23 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 99.23 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 99.22 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 99.22 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 99.22 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.22 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 99.22 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.21 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 99.21 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 99.21 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 99.21 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 99.21 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 99.2 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 99.2 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 99.2 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 99.2 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 99.2 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 99.2 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 99.19 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 99.19 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 99.19 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.17 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 99.17 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 99.17 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 99.17 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 99.17 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.17 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.17 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 99.16 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 99.15 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.15 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 99.15 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.14 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 99.14 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.14 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 99.13 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.13 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.13 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 99.13 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 99.12 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.12 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 99.11 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 99.09 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 99.09 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 99.08 | |
| smart00090 | 237 | RIO RIO-like kinase. | 99.07 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 99.06 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 99.04 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 99.03 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 99.03 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 99.02 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 99.02 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 99.01 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 99.01 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 99.0 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 98.99 | |
| cd05144 | 198 | RIO2_C RIO kinase family; RIO2, C-terminal catalyt | 98.99 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 98.97 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 98.96 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 98.95 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 98.94 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.94 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 98.93 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 98.91 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 98.91 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.91 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 98.91 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 98.9 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 98.9 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 98.89 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 98.87 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.87 | |
| PRK10345 | 210 | hypothetical protein; Provisional | 98.87 | |
| cd05119 | 187 | RIO RIO kinase family, catalytic domain. The RIO k | 98.85 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 98.81 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 98.77 | |
| cd05120 | 155 | APH_ChoK_like Aminoglycoside 3'-phosphotransferase | 98.67 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 98.67 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 98.64 | |
| PRK10359 | 232 | lipopolysaccharide core biosynthesis protein; Prov | 98.64 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.59 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 98.59 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 98.58 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 98.57 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.51 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.5 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 98.49 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 98.48 | |
| PRK12274 | 218 | serine/threonine protein kinase; Provisional | 98.47 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 98.43 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 98.42 | |
| PRK01723 | 239 | 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | 98.38 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.37 | |
| TIGR01982 | 437 | UbiB 2-polyprenylphenol 6-hydroxylase. This model | 98.37 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 98.32 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 98.28 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 98.28 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 98.2 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.19 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 98.03 | |
| KOG1165 | 449 | consensus Casein kinase (serine/threonine/tyrosine | 98.01 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.96 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.95 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.94 | |
| cd05151 | 170 | ChoK Choline Kinase (ChoK). The ChoK subfamily is | 97.91 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.9 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.87 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.87 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.86 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.86 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.82 | |
| PRK04750 | 537 | ubiB putative ubiquinone biosynthesis protein UbiB | 97.8 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.79 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.79 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 97.73 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.72 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.7 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 97.67 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.57 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.54 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| cd05146 | 197 | RIO3_euk RIO kinase family; eukaryotic RIO3, catal | 97.49 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.49 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.47 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.45 | |
| cd05154 | 223 | ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an | 97.41 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.4 | |
| KOG1266 | 458 | consensus Protein kinase [Signal transduction mech | 97.37 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 97.14 | |
| KOG4158 | 598 | consensus BRPK/PTEN-induced protein kinase [Signal | 96.53 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-67 Score=597.98 Aligned_cols=574 Identities=31% Similarity=0.426 Sum_probs=399.1
Q ss_pred cccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCC
Q 007553 10 LSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFG 89 (599)
Q Consensus 10 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 89 (599)
.....++++++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..|+
T Consensus 179 ~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLAS-NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred cCChhhhhCcCCCeeeccC-CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 3334577888888888887 777777888888888888888888888777887788888888888888888777777788
Q ss_pred CCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCee
Q 007553 90 NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTL 169 (599)
Q Consensus 90 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 169 (599)
++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 88888888888888777777777777888888888887777777777777777777777777777777777777777777
Q ss_pred ecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCC------------------------CCCEEeCCCCcCc
Q 007553 170 YLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLN------------------------LLDELRLSHNRLD 225 (599)
Q Consensus 170 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~------------------------~L~~L~l~~n~l~ 225 (599)
++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+..++ +|+.|++++|.++
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 7777777766666666677777777777666655555554444 4555555555555
Q ss_pred ccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCc
Q 007553 226 GPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305 (599)
Q Consensus 226 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 305 (599)
+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|++.+..|..+.
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhh
Confidence 4455555555555555555555555555555555666666666666665555543 346778888888888888888888
Q ss_pred CCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCCC---CCee
Q 007553 306 NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR---VPGL 382 (599)
Q Consensus 306 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---~~~l 382 (599)
.+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+.. +..+
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 8899999999999999999999999999999999999999999999999999999999999999999977654 4778
Q ss_pred ecccCccceeCCCCCCCCCCCCcccccCCCC------------C----CCceecceEeehHHHHHHHHHHHHHhhhhhcc
Q 007553 383 KWSENNLEVENPVISENAPPPQTQHFKGNKG------------K----NQKIVTPLVTIILPMVAFLALIFGILFVHRRM 446 (599)
Q Consensus 383 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~ 446 (599)
++++|++.+..|... .+.......+.||+. + +......+++++++++++++++++.++++|++
T Consensus 577 ~ls~N~l~~~~p~~~-~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (968)
T PLN00113 577 NISHNHLHGSLPSTG-AFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGR 655 (968)
T ss_pred eccCCcceeeCCCcc-hhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999988777422 111111112222210 0 00111112222222222222222222222222
Q ss_pred cccCCCCcccccccCCCcccc--cCCccccHHHHHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhH
Q 007553 447 DEKINPNTREMKKCADEFSIW--DYDGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEEL 523 (599)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~ 523 (599)
++.. .+..+........... .....++++++. ..+...+.||+|+||.||+|.. .+|..||||++........
T Consensus 656 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~ 731 (968)
T PLN00113 656 NNLE-LKRVENEDGTWELQFFDSKVSKSITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPS 731 (968)
T ss_pred hccc-ccccccccccccccccccccchhhhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccccH
Confidence 2111 1111110000000000 111224455544 3466778899999999999996 5789999999875433222
Q ss_pred HHHHHhhc--cccccC--------CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCc
Q 007553 524 AFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYR 591 (599)
Q Consensus 524 ~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~ 591 (599)
+|++. +++||| ...+..++|||||++| +++++. ++|.++.+||.|||+||+|||+.+.+
T Consensus 732 ---~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~------l~~~~~~~i~~~ia~~L~yLH~~~~~ 802 (968)
T PLN00113 732 ---SEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN------LSWERRRKIAIGIAKALRFLHCRCSP 802 (968)
T ss_pred ---HHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhc------CCHHHHHHHHHHHHHHHHHhccCCCC
Confidence 33444 899999 4667789999999999 888862 89999999999999999999999999
Q ss_pred cccccccC
Q 007553 592 KSYYQRLY 599 (599)
Q Consensus 592 ~i~Hrdl~ 599 (599)
+|+|||++
T Consensus 803 ~iiH~dlk 810 (968)
T PLN00113 803 AVVVGNLS 810 (968)
T ss_pred CeecCCCC
Confidence 99999986
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=423.82 Aligned_cols=389 Identities=36% Similarity=0.550 Sum_probs=337.6
Q ss_pred cccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCC
Q 007553 6 NAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIP 85 (599)
Q Consensus 6 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 85 (599)
.+.......++.+++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..++.+++|++|+|++|.+++.+|
T Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 151 MLSGEIPNDIGSFSSLKVLDLGG-NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred cccccCChHHhcCCCCCEEECcc-CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 34433445688999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCC
Q 007553 86 LEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165 (599)
Q Consensus 86 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 165 (599)
..|+++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccC
Q 007553 166 LSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS 245 (599)
Q Consensus 166 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 245 (599)
|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 310 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888888888888
Q ss_pred CcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCC------------------
Q 007553 246 NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNC------------------ 307 (599)
Q Consensus 246 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l------------------ 307 (599)
|.+.+..|..+..+++|+.|++++|.+++.+|..+..++.|+.|++++|.+.+.+|..+..+
T Consensus 390 n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred CEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 88877777777777777777777777777777666666666666666666665555433333
Q ss_pred -----CCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCCC---C
Q 007553 308 -----SQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR---V 379 (599)
Q Consensus 308 -----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---~ 379 (599)
++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+.. +
T Consensus 470 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 549 (968)
T PLN00113 470 DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549 (968)
T ss_pred cccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence 45666666677777777777778888888888888888888888888889999999999999888876654 4
Q ss_pred CeeecccCccceeCCC
Q 007553 380 PGLKWSENNLEVENPV 395 (599)
Q Consensus 380 ~~l~~~~n~~~~~~~~ 395 (599)
..+++++|++.+..|.
T Consensus 550 ~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 550 SQLDLSQNQLSGEIPK 565 (968)
T ss_pred CEEECCCCcccccCCh
Confidence 7788899998877763
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=315.88 Aligned_cols=356 Identities=23% Similarity=0.248 Sum_probs=270.8
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeec
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 101 (599)
++|++++ |.+....+..|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|+..-..++..++.|+.|||+.
T Consensus 81 ~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccc-cccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 4588887 7777777777777888888888888877 6776555556688888888888766666777778888888888
Q ss_pred CcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCc
Q 007553 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLP 181 (599)
Q Consensus 102 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 181 (599)
|.|+.+...+|..-.++++|+|++|.|+....+.|.++.+|..|.|++|+++...+..|+++++|+.|+|..|.+...--
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 88775554666666778888888888887777778888888888888888876666677778888888888887765434
Q ss_pred cccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCC
Q 007553 182 KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKY 261 (599)
Q Consensus 182 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 261 (599)
-.|.++++|+.|.+..|++.......|-.+.+++.|+|+.|++......++-++++|+.|++++|.|...-++.+.-.++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 56777888888888888887766677777888888888888887766677778888888888888887777777777788
Q ss_pred CCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCC---ccccCCCCCCEEe
Q 007553 262 LDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP---SEIGNLIHLRQLD 338 (599)
Q Consensus 262 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ 338 (599)
|++|+|+.|.++...+.+|..+..|++|+|++|.+...-...|..+++|+.|||++|.+++.+. ..|.++++|+.|.
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 8888888888876667777777888888888888876666677778888888888887776544 3456677888888
Q ss_pred CCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCCCC
Q 007553 339 LSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRV 379 (599)
Q Consensus 339 l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 379 (599)
+.+|++..+.-..|..++.|+.||+.+|.+..+-|+.|..+
T Consensus 399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 88888876555677788888888888888877777766654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=316.69 Aligned_cols=367 Identities=24% Similarity=0.250 Sum_probs=331.2
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS 83 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 83 (599)
+|.+.++...-|.++++|+.+++-+ |.++ .+|.......+|+.|+|.+|.|+..-.+.++.++.||+|||+.|.|+.+
T Consensus 87 nNkl~~id~~~f~nl~nLq~v~l~~-N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i 164 (873)
T KOG4194|consen 87 NNKLSHIDFEFFYNLPNLQEVNLNK-NELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEI 164 (873)
T ss_pred ccccccCcHHHHhcCCcceeeeecc-chhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcc
Confidence 5667778888889999999999998 7776 8888667777899999999999987778899999999999999999966
Q ss_pred CCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCC
Q 007553 84 IPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163 (599)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 163 (599)
....|..-.++++|+|++|+|+...-..|..+.+|.+|.|+.|+++...+..|.+|++|+.|+|..|+|.-.....|.++
T Consensus 165 ~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 165 PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred cCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 66788888899999999999998888999999999999999999998778889999999999999999986556689999
Q ss_pred CCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEc
Q 007553 164 NQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDL 243 (599)
Q Consensus 164 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 243 (599)
++|+.|.|..|++...-...|..+.++++|+|..|.+...-..++.+++.|+.|++++|.+...-++.++.+++|++|+|
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 99999999999999888889999999999999999999888889999999999999999999888888999999999999
Q ss_pred cCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCc---cCcCCCCCCEEEcccCcC
Q 007553 244 SSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPP---ELMNCSQLQNLAVNHNSL 320 (599)
Q Consensus 244 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~---~~~~l~~L~~L~l~~n~l 320 (599)
++|+++...+..|..+..|++|+|++|.+...-...|..+.+|+.|||++|.++..+.+ .|.++++|+.|++.+|++
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 99999998899999999999999999999876667889999999999999999876543 578899999999999999
Q ss_pred ccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCC
Q 007553 321 SGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373 (599)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 373 (599)
......+|.+++.|++|+|.+|.|..+-|..|..+ .|+.|.+..-.+-|.+.
T Consensus 405 k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 405 KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 96666799999999999999999998889999888 88888887666555443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-34 Score=284.18 Aligned_cols=363 Identities=29% Similarity=0.419 Sum_probs=278.3
Q ss_pred cCCCCCcEEeeCCCCCCe-ecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCC
Q 007553 16 TCFPNLVTFRIWGTRFLS-GRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94 (599)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 94 (599)
+-+|..|-.++++ |.|+ +.+|....+|+.++.|.|.+..+. .+|+.++.+.+|+.|.+++|+++ .+...+..|+.|
T Consensus 4 gVLpFVrGvDfsg-NDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSG-NDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRL 80 (1255)
T ss_pred cccceeecccccC-CcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhh
Confidence 4577888899999 8888 579999999999999999999987 88999999999999999999988 455678889999
Q ss_pred cEEEeecCcCCcc-CCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccc
Q 007553 95 YDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAY 173 (599)
Q Consensus 95 ~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 173 (599)
+.+.++.|++... +|..+..+..|..|++|+|++. ..|..+...+++-+|+|++|+|..+....|-+++.|-.|+||+
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 9999999988644 6778889999999999999998 6788899999999999999999754334567888888999999
Q ss_pred ccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcC-cccCcccCCCCCCCCEEEccCCcCCCCC
Q 007553 174 NNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRL-DGPIPPTIGNLTYLTSLDLSSNQLSGLL 252 (599)
Q Consensus 174 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 252 (599)
|++. .+|..+..+..|++|+|++|.+.......+..+++|+.|.+++.+- ...+|.++..+.+|..+|++.|++. .+
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 9887 4566778888899999999887654444555667777777777543 2456777788888888888888877 67
Q ss_pred CcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCcc-CCCccccCC
Q 007553 253 PREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG-SIPSEIGNL 331 (599)
Q Consensus 253 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l 331 (599)
|..+-.+++|+.|+|++|.|+ .+....+...+|++|++|.|+++ .+|.++..+++|+.|.+.+|+++- -+|..++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 788888888888888888876 33444455567778888888776 577777777777777777777652 366677777
Q ss_pred CCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccC---CCCCeeecccCc
Q 007553 332 IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSV---FRVPGLKWSENN 388 (599)
Q Consensus 332 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---~~~~~l~~~~n~ 388 (599)
..|+.+..++|.+. .+|..++.+..|+.|.++.|.+- ..|+.+ ..+..+++..|+
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 77777777777776 66777777777777777777664 234433 233445555554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-33 Score=275.92 Aligned_cols=349 Identities=28% Similarity=0.396 Sum_probs=306.3
Q ss_pred ccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccc-cCCccCCCCCC
Q 007553 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNG-SIPLEFGNLKD 93 (599)
Q Consensus 15 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~ 93 (599)
...++.++.|.+.. ..+. .+|+.++.|.+|++|.+++|++. .+.+.++.++.|+.+++..|++.. -+|..+-.+..
T Consensus 28 v~qMt~~~WLkLnr-t~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNR-TKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred HHHhhheeEEEech-hhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhccccc
Confidence 34678889999986 6655 79999999999999999999998 677779999999999999997753 56778889999
Q ss_pred CcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccc
Q 007553 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAY 173 (599)
Q Consensus 94 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 173 (599)
|..|||++|++. ..|..+..-.++-+|++|+|+|..+....+-+|+-|-.|||++|++. .+|..+..+..|++|.|++
T Consensus 105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCC
Confidence 999999999998 68999999999999999999999666666889999999999999987 5777889999999999999
Q ss_pred ccccccCccccCCCCCCCEEEccCCccc-ccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCC
Q 007553 174 NNLVGPLPKEVGNLKNLDSLLLNRNNLT-GPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLL 252 (599)
Q Consensus 174 n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 252 (599)
|.+.-.....+..+++|++|.+++..-+ ..+|.++..+.+|..++++.|.+. .+|+.+-.+++|+.|+|++|.|+. +
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L 260 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-L 260 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-e
Confidence 9886554455667788888888886543 468889999999999999999998 889999999999999999999984 4
Q ss_pred CcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccC-CCccCcCCCCCCEEEcccCcCccCCCccccCC
Q 007553 253 PREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSS-IPPELMNCSQLQNLAVNHNSLSGSIPSEIGNL 331 (599)
Q Consensus 253 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 331 (599)
....+...+|++|+|++|+++ .+|..+..++.|+.|.+.+|.++-. +|..++.+.+|+.+..++|.+. ..|+.++.|
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC 338 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC 338 (1255)
T ss_pred eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh
Confidence 555666788999999999998 7899999999999999999987633 8899999999999999999998 899999999
Q ss_pred CCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCC
Q 007553 332 IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373 (599)
Q Consensus 332 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 373 (599)
..|+.|.|+.|.+- .+|+.+.-++.|+.||+..|+---..|
T Consensus 339 ~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 99999999999998 899999999999999999997544444
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-34 Score=266.26 Aligned_cols=344 Identities=32% Similarity=0.478 Sum_probs=217.4
Q ss_pred cCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccC
Q 007553 35 RIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGN 114 (599)
Q Consensus 35 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 114 (599)
.+|..++...+++.|+++.|.+. .+|+.++.+..|+.|+..+|+++ ..|.++..+.+|..|++.+|++....|..+.
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~- 181 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA- 181 (565)
T ss_pred hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-
Confidence 34555555555555555555555 44445555556666666666665 4455555555666666666666544333333
Q ss_pred CCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEE
Q 007553 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLL 194 (599)
Q Consensus 115 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 194 (599)
++.|++|++..|.+. .+|..++++.+|+.|++..|++.. .| .|.++..|++|+++.|++.....+....++++..||
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 666666666666665 556667777777777777777763 44 566777777777777766643333445777777777
Q ss_pred ccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCC------------------------
Q 007553 195 LNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSG------------------------ 250 (599)
Q Consensus 195 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------ 250 (599)
+.+|++. ..|..++.+.+|.+||+++|.++ .+|..++++ .|+.|.+.+|.+..
T Consensus 259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 259 LRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred ccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 7777776 46677777777777777777776 445566666 66666666665310
Q ss_pred ----------------------------------------CCCccc-C--CCCCCCEEeccCccee--------------
Q 007553 251 ----------------------------------------LLPREV-G--NLKYLDSLSLDRNNLI-------------- 273 (599)
Q Consensus 251 ----------------------------------------~~~~~l-~--~l~~L~~L~L~~n~l~-------------- 273 (599)
.+|... . .-.-...++++.|++.
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 011110 0 0011233455555443
Q ss_pred ---------ecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccc
Q 007553 274 ---------GPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFI 344 (599)
Q Consensus 274 ---------~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 344 (599)
+-+|..+..+++|..|+|++|-+. .+|..++.+-.|+.|+++.|.+. .+|..+-.+..++.+-.++|++
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc
Confidence 123334566788999999988876 67888888888999999999887 6777666666677777777888
Q ss_pred cccCCcccCCCCCCCEEECCCCcCcccCCccCCC---CCeeecccCccc
Q 007553 345 NGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR---VPGLKWSENNLE 390 (599)
Q Consensus 345 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---~~~l~~~~n~~~ 390 (599)
....|+.+..+.+|.+||+.+|.+..+ |..+.. ++.+.+.+|++.
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccChHHhhhhhhcceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence 755566677888888888888887644 333443 366777777776
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-33 Score=261.45 Aligned_cols=387 Identities=32% Similarity=0.468 Sum_probs=317.7
Q ss_pred cccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCC
Q 007553 12 QLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91 (599)
Q Consensus 12 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 91 (599)
..++.++..+.+|++.. |.+. ..|++++.+..++.|+.++|++. .+|..++.+..|+.|++++|.+. .+|.+++.+
T Consensus 61 ~~dl~nL~~l~vl~~~~-n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~ 136 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHD-NKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRL 136 (565)
T ss_pred cHhhhcccceeEEEecc-chhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHH
Confidence 44677899999999997 7776 78889999999999999999998 88999999999999999999998 678889999
Q ss_pred CCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeec
Q 007553 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYL 171 (599)
Q Consensus 92 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 171 (599)
..|+.|+..+|+++ ..|..+.++.+|..+++.+|.+....|+.+. ++.|++||...|.+. .+|..++.+.+|..|++
T Consensus 137 ~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 137 LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYL 213 (565)
T ss_pred hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHh
Confidence 99999999999998 5678899999999999999999966666555 999999999999876 68889999999999999
Q ss_pred ccccccccCccccCCCCCCCEEEccCCcccccCchh-ccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCC
Q 007553 172 AYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPST-IGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSG 250 (599)
Q Consensus 172 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 250 (599)
..|++.. .| .|.++..|.+|+++.|.+. .+|.+ ...+++|..||+..|++. ..|+.++-+++|..||+++|.+++
T Consensus 214 ~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 214 RRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred hhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence 9999984 55 7999999999999999997 45554 459999999999999998 889999999999999999999995
Q ss_pred CCCcccCCCCCCCEEeccCcceee-------------------------------------cCCc-Cc---cCCC-----
Q 007553 251 LLPREVGNLKYLDSLSLDRNNLIG-------------------------------------PIPP-TI---GYLT----- 284 (599)
Q Consensus 251 ~~~~~l~~l~~L~~L~L~~n~l~~-------------------------------------~~~~-~~---~~~~----- 284 (599)
.|.+++++ .|+.|-+.+|.+.. +.+. .+ ..+.
T Consensus 290 -Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL 367 (565)
T KOG0472|consen 290 -LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL 367 (565)
T ss_pred -CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence 78889999 89999999987610 0000 00 0011
Q ss_pred ---------------------CCCEEECCCCCCc-----------------------cCCCccCcCCCCCCEEEcccCcC
Q 007553 285 ---------------------NLTSLNLGYNQLN-----------------------SSIPPELMNCSQLQNLAVNHNSL 320 (599)
Q Consensus 285 ---------------------~L~~L~ls~n~~~-----------------------~~~~~~~~~l~~L~~L~l~~n~l 320 (599)
-.+..+++.|++. +.+|..+..+++|..|++++|.+
T Consensus 368 ~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L 447 (565)
T KOG0472|consen 368 DVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLL 447 (565)
T ss_pred cccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchh
Confidence 1344555555543 22334455678999999999999
Q ss_pred ccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCC---CCCeeecccCccceeCCCCC
Q 007553 321 SGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF---RVPGLKWSENNLEVENPVIS 397 (599)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~---~~~~l~~~~n~~~~~~~~~~ 397 (599)
. .+|..++.+..|+.|+++.|++. .+|.++..+..++++-.++|++...-|+.+. .+..+++.+|.+...+|. -
T Consensus 448 n-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-L 524 (565)
T KOG0472|consen 448 N-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-L 524 (565)
T ss_pred h-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-h
Confidence 8 68889999999999999999998 8899988888899998999999877766444 447889999988866653 2
Q ss_pred CCCCCCCcccccCCCCC
Q 007553 398 ENAPPPQTQHFKGNKGK 414 (599)
Q Consensus 398 ~~~~~~~~~~~~~~~~~ 414 (599)
+...........||+..
T Consensus 525 gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 525 GNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccceeEEEecCCccC
Confidence 44444555566777754
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-28 Score=242.18 Aligned_cols=129 Identities=26% Similarity=0.395 Sum_probs=117.6
Q ss_pred CccccHHHHHHHhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------C
Q 007553 470 DGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------S 538 (599)
Q Consensus 470 ~~~~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~ 538 (599)
...|++.++..||++|...+.||+|+||.||+|.+++|+.||||++.....+ ..+|..|+++ +++||| .
T Consensus 62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~ 141 (361)
T KOG1187|consen 62 LRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCL 141 (361)
T ss_pred cceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEe
Confidence 4568999999999999999999999999999999999999999999887665 6779999999 999999 4
Q ss_pred CCC-Ccceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 HTD-NDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 ~~~-~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+.+ ..++|||||++| +++|+.+... +++|.+|++||.|||+||+|||+.|.++|||||||
T Consensus 142 e~~~~~~LVYEym~nGsL~d~L~~~~~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiK 204 (361)
T KOG1187|consen 142 EGGEHRLLVYEYMPNGSLEDHLHGKKGE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIK 204 (361)
T ss_pred cCCceEEEEEEccCCCCHHHHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCC
Confidence 455 499999999999 8999975544 79999999999999999999999999999999996
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=259.71 Aligned_cols=343 Identities=23% Similarity=0.284 Sum_probs=276.0
Q ss_pred ccccccccCCCCCcEEeeCCCCC------CeecCCcccCCCC-CCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccc
Q 007553 9 ELSQLNFTCFPNLVTFRIWGTRF------LSGRIPSETGALS-RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILN 81 (599)
Q Consensus 9 ~~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~ 81 (599)
.++..+|.++++|+.|.++. +. ....+|..+..++ +|+.|.+.++.++ .+|..| ...+|++|++.+|++.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~-~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYT-KKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eecHHHHhcCccccEEEEec-ccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc
Confidence 45667799999999999975 32 3345777777664 6999999999987 778777 5789999999999988
Q ss_pred ccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCccccc
Q 007553 82 GSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161 (599)
Q Consensus 82 ~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~ 161 (599)
.++..+..+++|+.|+|+++.....+| .+..+++|+.|++++|.....+|..+.++++|+.|++++|.....+|..+
T Consensus 625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 625 -KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred -ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 677788899999999999986555666 48889999999999998777889999999999999999987666777665
Q ss_pred CCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCc-------ccCcccCCC
Q 007553 162 HLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD-------GPIPPTIGN 234 (599)
Q Consensus 162 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~ 234 (599)
++++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|+.|.+.++... ...+..+..
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 7899999999999776666543 468999999999986 455544 5788888888764321 111222334
Q ss_pred CCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEE
Q 007553 235 LTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLA 314 (599)
Q Consensus 235 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~ 314 (599)
.++|+.|++++|...+.+|.+++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~ 852 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLN 852 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeE
Confidence 5789999999998877899999999999999999987666777665 6899999999998766555543 36799999
Q ss_pred cccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCc
Q 007553 315 VNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNN 367 (599)
Q Consensus 315 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 367 (599)
|++|.++ .+|..+..+++|+.|++++|+-...+|..+..++.|+.+++++|.
T Consensus 853 Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 853 LSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9999998 678889999999999999965544677778888999999998884
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=246.56 Aligned_cols=325 Identities=22% Similarity=0.280 Sum_probs=261.6
Q ss_pred CcccCCCCCCCEEEcccCc------CcccCCcCCCCCC-CCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCC
Q 007553 37 PSETGALSRLKVLDLSYNR------LTGTIPSEIGSLR-DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIP 109 (599)
Q Consensus 37 ~~~~~~~~~L~~L~l~~n~------~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~ 109 (599)
+..|..|++|+.|.+..+. +...+|..|..++ +|+.|.+.++.+. .+|..| ...+|++|+|.+|++. .+|
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 4457889999999996653 3345677777765 6999999999987 678777 5789999999999987 567
Q ss_pred ccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCC
Q 007553 110 SSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKN 189 (599)
Q Consensus 110 ~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 189 (599)
..+..+++|+.|+++++.....+|+ ++.+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 8889999999999998875556665 8899999999999998777889999999999999999987776777655 7899
Q ss_pred CCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCC-------CCCCcccCCCCCC
Q 007553 190 LDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLS-------GLLPREVGNLKYL 262 (599)
Q Consensus 190 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~l~~l~~L 262 (599)
|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|++|.+.++... ...+.....+++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 999999999765555543 467999999999986 566554 6788999988874322 1122223345789
Q ss_pred CEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCc
Q 007553 263 DSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342 (599)
Q Consensus 263 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 342 (599)
+.|+|++|...+.+|.+++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n 856 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT 856 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence 999999998888899999999999999999987666778766 7899999999998766556543 368999999999
Q ss_pred cccccCCcccCCCCCCCEEECCCCcCcccCCccC
Q 007553 343 FINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSV 376 (599)
Q Consensus 343 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 376 (599)
.++ .+|..+..+++|+.|++++|.--..+|...
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 998 788889999999999999954333344433
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-28 Score=252.50 Aligned_cols=354 Identities=32% Similarity=0.426 Sum_probs=243.9
Q ss_pred CCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEE
Q 007553 19 PNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLR 98 (599)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 98 (599)
-+|++|++++ |. .+..|..+..+.+|+.|+++.|.|. ..|.+.+.+.+|++|.|.+|.+. ..|.++..+++|+.|+
T Consensus 45 v~L~~l~lsn-n~-~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 45 VKLKSLDLSN-NQ-ISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLD 120 (1081)
T ss_pred eeeEEeeccc-cc-cccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccc
Confidence 3377777774 33 3466666666677777777777776 55666666777777777777666 5666666777777777
Q ss_pred eecCcCCccCCccccCCCcCCEEeeecc-------------------cccccCCccccCCCcccEEecccCccC------
Q 007553 99 LQGNKLDGLIPSSIGNLTNLTHLDLSLN-------------------QLSGRLPQEVGNLKNLVSLFLDNNNLT------ 153 (599)
Q Consensus 99 L~~n~~~~~~~~~~~~l~~L~~L~l~~n-------------------~i~~~~~~~l~~l~~L~~L~l~~n~i~------ 153 (599)
+++|++. ..|..+..+..+..+..++| .+.+.++.++..++. .|+|++|++.
T Consensus 121 lS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 121 LSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSN 197 (1081)
T ss_pred cchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhh
Confidence 7777664 33444433333333333322 222222222222222 2333333322
Q ss_pred -----------------------------------CCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCC
Q 007553 154 -----------------------------------GPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRN 198 (599)
Q Consensus 154 -----------------------------------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 198 (599)
...+. ..-.+|+.++++.|++.. +|++++.+.+|+.++...|
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHN 274 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccch
Confidence 11110 011256777777777764 5688899999999999999
Q ss_pred cccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCccc----------------------
Q 007553 199 NLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV---------------------- 256 (599)
Q Consensus 199 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---------------------- 256 (599)
.+. .+|..+....+|+.|.+..|.+. -+|+....++.|++|+|..|++.. .|..+
T Consensus 275 ~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 275 RLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred hHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccc
Confidence 985 67777788888888888888887 667677788889999998888863 33211
Q ss_pred ----CCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCC
Q 007553 257 ----GNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLI 332 (599)
Q Consensus 257 ----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 332 (599)
...+.|+.|++.+|.+++..-+.+.++..|+.|+|++|++.......+..+..|+.|+||+|+++ .+|..+.++.
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~ 430 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG 430 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh
Confidence 12345777899999999887778889999999999999998544456788999999999999998 6788888999
Q ss_pred CCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCccc-CCccC--CCCCeeecccCc
Q 007553 333 HLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV-IPKSV--FRVPGLKWSENN 388 (599)
Q Consensus 333 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~--~~~~~l~~~~n~ 388 (599)
.|++|...+|++. .+| .+..++.|+.+|+|.|.++.. +|... ..++.+++++|.
T Consensus 431 ~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 9999999999998 677 678889999999999988754 33322 356778888876
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-27 Score=244.97 Aligned_cols=392 Identities=30% Similarity=0.386 Sum_probs=290.7
Q ss_pred ccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCc
Q 007553 7 AAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL 86 (599)
Q Consensus 7 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 86 (599)
...||..-+.. ..+..|++.. |.+-....+....+-+|++||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|.
T Consensus 10 l~~ip~~i~~~-~~~~~ln~~~-N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~ 85 (1081)
T KOG0618|consen 10 LELIPEQILNN-EALQILNLRR-NSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPS 85 (1081)
T ss_pred CcccchhhccH-HHHHhhhccc-cccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCch
Confidence 33444443333 3378888887 6654333334455667999999999997 78888999999999999999998 6788
Q ss_pred cCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccC----------------
Q 007553 87 EFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN---------------- 150 (599)
Q Consensus 87 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n---------------- 150 (599)
+..++++|++|+|.+|.+. ..|.++..+.+|+.|++++|... .+|..+..++.+.++..++|
T Consensus 86 s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l 163 (1081)
T KOG0618|consen 86 SCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDL 163 (1081)
T ss_pred hhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhh
Confidence 8899999999999999987 67999999999999999999987 56666766766666666666
Q ss_pred ---ccCCCCcccccCCCCCCeeecccccccccCccc---------------------------------------cCCCC
Q 007553 151 ---NLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKE---------------------------------------VGNLK 188 (599)
Q Consensus 151 ---~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~---------------------------------------l~~l~ 188 (599)
.+.+.++..+..+.. .|+|.+|.+....... -..-.
T Consensus 164 ~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~ 241 (1081)
T KOG0618|consen 164 RLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPL 241 (1081)
T ss_pred hhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccc
Confidence 222333333322222 3555555443100000 01113
Q ss_pred CCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEecc
Q 007553 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 268 (599)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 268 (599)
+|+++++++|.++ .+|++++.+.+|+.|+...|.++ .+|..+....+|+.|.+..|.+. -+|..+.++..|++|+|.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 5777777777777 46699999999999999999996 77888888999999999999998 577788889999999999
Q ss_pred CcceeecCCcCc--------------------------cCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCcc
Q 007553 269 RNNLIGPIPPTI--------------------------GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322 (599)
Q Consensus 269 ~n~l~~~~~~~~--------------------------~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 322 (599)
.|++.. .|..+ ..++.|+.|++.+|.+++..-+.+.+..+|+.|+|++|.+..
T Consensus 319 ~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 999853 22110 124567888999999998877888899999999999999986
Q ss_pred CCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCc--cCCCCCeeecccCccceeCCCCCCCC
Q 007553 323 SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPK--SVFRVPGLKWSENNLEVENPVISENA 400 (599)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~~~l~~~~n~~~~~~~~~~~~~ 400 (599)
.....+.++..|++|+|++|+++ .+|..+..+..|++|..-+|++... |+ .+..+..++++.|+++...-......
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-Pe~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-PELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-hhhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 55567889999999999999999 7889999999999999999998754 32 13344778899998864322111112
Q ss_pred CCCCcccccCCC
Q 007553 401 PPPQTQHFKGNK 412 (599)
Q Consensus 401 ~~~~~~~~~~~~ 412 (599)
+..+...++||.
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 344444555554
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-25 Score=206.03 Aligned_cols=130 Identities=28% Similarity=0.344 Sum_probs=90.1
Q ss_pred CCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeec-CcCCccCCccccCCCcCCEEeee
Q 007553 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG-NKLDGLIPSSIGNLTNLTHLDLS 124 (599)
Q Consensus 46 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~ 124 (599)
-..++|..|+|+...|.+|+.+++||+|||++|.|+.+-|.+|.+++.|-+|.+-+ |+|+++....|+++..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 35667777777766666777777777777777777777777777777776666665 67776555667777777777777
Q ss_pred cccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccc
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNN 175 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 175 (599)
-|.+.-+..+.|..+++|..|.+..|.+.......|..+..++++.+..|.
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 777776666677777777777777777664433466666677777666555
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=203.94 Aligned_cols=263 Identities=29% Similarity=0.360 Sum_probs=138.2
Q ss_pred CCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEee
Q 007553 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDL 123 (599)
Q Consensus 44 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 123 (599)
..-..|+|+.+.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++. +|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 34556777777776 5665553 36777777777776 3443 24667777777777663 3432 356667777
Q ss_pred ecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCccccc
Q 007553 124 SLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGP 203 (599)
Q Consensus 124 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 203 (599)
++|.+.. +|.. .++|+.|++++|+++. +|. ..++|+.|++++|++.+ +|.. ..+|+.|++++|.+++
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 7776652 3332 2456666666666653 332 13456666666666654 2221 2345556666665553
Q ss_pred CchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCC
Q 007553 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYL 283 (599)
Q Consensus 204 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 283 (599)
+|. ...+|+.|+|++|++++ +|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.+.+ +|.. .
T Consensus 337 LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~ 401 (788)
T PRK15387 337 LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---P 401 (788)
T ss_pred ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---c
Confidence 332 11355666666666552 3321 2345555666665553 3322 1345555555555542 3321 2
Q ss_pred CCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCc
Q 007553 284 TNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPS 350 (599)
Q Consensus 284 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 350 (599)
++|+.|++++|.+.+ +|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+.
T Consensus 402 s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 345555555555543 3322 124455555555554 3455555555555555555555544443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-21 Score=204.02 Aligned_cols=266 Identities=27% Similarity=0.336 Sum_probs=212.1
Q ss_pred CCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEec
Q 007553 68 RDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFL 147 (599)
Q Consensus 68 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 147 (599)
.+-..|+|+++.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++. +|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 45778999999998 6777765 489999999999985 554 25899999999999994 4542 478999999
Q ss_pred ccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCccc
Q 007553 148 DNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGP 227 (599)
Q Consensus 148 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 227 (599)
++|.++. +|.. .++|+.|++++|++.. +|. ..++|+.|++++|.+.+ +|.. ...|+.|++++|.+++
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 9999874 4443 3578899999999885 443 24789999999999985 4432 3468899999999984
Q ss_pred CcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCC
Q 007553 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNC 307 (599)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 307 (599)
+|. ...+|+.|++++|.+++ +|.. .++|+.|++++|.+.+ +|.. +.+|+.|++++|.+++ +|.. .
T Consensus 337 LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~ 401 (788)
T PRK15387 337 LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---P 401 (788)
T ss_pred ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---c
Confidence 453 12589999999999985 5543 3578899999999984 5543 3679999999999985 5543 3
Q ss_pred CCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCC
Q 007553 308 SQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377 (599)
Q Consensus 308 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 377 (599)
++|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|..+..++.|+.|++++|++++..+..+.
T Consensus 402 s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 679999999999984 6653 347889999999998 7899999999999999999999998877653
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-23 Score=194.13 Aligned_cols=310 Identities=21% Similarity=0.218 Sum_probs=199.2
Q ss_pred EEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeec-cc
Q 007553 49 LDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL-NQ 127 (599)
Q Consensus 49 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~-n~ 127 (599)
.+.++-.++ .+|..+- +.-..++|..|.|+.+.|.+|+.+++|++|||++|.|+.+-|+.|..+.+|..|-+-+ |+
T Consensus 51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 345555555 4453321 3556777777777766667777777777777777777777777777777766665544 77
Q ss_pred ccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchh
Q 007553 128 LSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPST 207 (599)
Q Consensus 128 i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 207 (599)
|+....+.|.+|..|+.|.+.-|++.-.....|..+++|..|.+..|.+...-...|..+..++.+.+..|.+. .
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i-----c 202 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI-----C 202 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc-----c
Confidence 77666667777777777777777777666667777777777777777766444446777777777777776632 1
Q ss_pred ccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCC-CCCCEEeccCcceeecCCc-CccCCCC
Q 007553 208 IGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNL-KYLDSLSLDRNNLIGPIPP-TIGYLTN 285 (599)
Q Consensus 208 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~-~~~~~~~ 285 (599)
.++++.+.... ...|..+++.+-+.-..+.+.++....+..|... ..+..=..+.+...+..|. .|..+++
T Consensus 203 dCnL~wla~~~-------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~ 275 (498)
T KOG4237|consen 203 DCNLPWLADDL-------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPN 275 (498)
T ss_pred ccccchhhhHH-------hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhccc
Confidence 12222222110 1122233333333333444444443333322211 1111111122323333332 3677888
Q ss_pred CCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCC
Q 007553 286 LTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSK 365 (599)
Q Consensus 286 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~ 365 (599)
|+.|+|++|.++++-+.+|.....+++|.|..|++...-...|.++..|++|+|.+|+|+...|..|..+.+|.+|++-.
T Consensus 276 L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 276 LRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred ceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 88888888888887778888888888888888888766666778888888888888888888888888888888888888
Q ss_pred CcCcccCC
Q 007553 366 NNLSGVIP 373 (599)
Q Consensus 366 n~l~~~~~ 373 (599)
|++.+.+-
T Consensus 356 Np~~CnC~ 363 (498)
T KOG4237|consen 356 NPFNCNCR 363 (498)
T ss_pred CcccCccc
Confidence 88876654
|
|
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-20 Score=179.24 Aligned_cols=105 Identities=23% Similarity=0.320 Sum_probs=89.9
Q ss_pred cceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc----cccccC------------CCCCCcceeecccc
Q 007553 488 KYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST----DFRHYN------------SHTDNDDSSDEHLA 551 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~----~l~H~n------------~~~~~~~lv~e~~~ 551 (599)
..++|+|+||.||||.+. ++.||||++.... .+.|..|-.+ .|+|+| ..+.++++|+||.+
T Consensus 215 ~eli~~Grfg~V~KaqL~-~~~VAVKifp~~~--kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~ 291 (534)
T KOG3653|consen 215 LELIGRGRFGCVWKAQLD-NRLVAVKIFPEQE--KQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHP 291 (534)
T ss_pred HHHhhcCccceeehhhcc-CceeEEEecCHHH--HHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeecc
Confidence 456999999999999994 7999999997643 4557777666 999999 23558899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhC------CCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLAD------RKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~------~~~~~i~Hrdl~ 599 (599)
.| .+||..+. ++|....+||..+|+||+|||+ +.+|+|+||||+
T Consensus 292 kGsL~dyL~~nt----isw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlk 343 (534)
T KOG3653|consen 292 KGSLCDYLKANT----ISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLK 343 (534)
T ss_pred CCcHHHHHHhcc----ccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCcccccccc
Confidence 99 99999644 9999999999999999999995 466899999996
|
|
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-20 Score=191.63 Aligned_cols=126 Identities=25% Similarity=0.328 Sum_probs=108.3
Q ss_pred cCCccccHHHHHHHhhhccc---------cceecccCCceEEEEEeC----CCCEEEEEEecCCch--hhHHHHHHhhc-
Q 007553 468 DYDGRITFEEMIQATEDFHI---------KYCIGTGGYGSVYRAQLS----SGRVVALKKLHRSET--EELAFLETSST- 531 (599)
Q Consensus 468 ~~~~~~~~~~l~~at~~~~~---------~~~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~~--~~~~f~~e~~~- 531 (599)
.+...++|+|--.|.+.|.. +.+||.|.||+||+|+++ ....||||.|+..-. ++.+|+.|+.+
T Consensus 605 ~YiDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIM 684 (996)
T KOG0196|consen 605 TYIDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIM 684 (996)
T ss_pred eecCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhc
Confidence 34456888888777776643 478999999999999974 246899999987643 47899999999
Q ss_pred -cccccC--------CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 532 -DFRHYN--------SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 532 -~l~H~n--------~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
.++||| ....+.++|+|||+|| +.||+.+.+ +++|.|.+.|..|||.||.||. ...+|||||
T Consensus 685 GQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DG--qftviQLVgMLrGIAsGMkYLs---dm~YVHRDL 757 (996)
T KOG0196|consen 685 GQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDG--QFTVIQLVGMLRGIASGMKYLS---DMNYVHRDL 757 (996)
T ss_pred ccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCC--ceEeehHHHHHHHHHHHhHHHh---hcCchhhhh
Confidence 999999 6788999999999999 999997654 4999999999999999999999 899999998
|
|
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-20 Score=177.46 Aligned_cols=110 Identities=18% Similarity=0.221 Sum_probs=94.3
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc----cccccC------------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST----DFRHYN------------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~----~l~H~n------------~~~~~~~lv 546 (599)
+.....+.||+|+||+||+|.|+ |+.||||++.. .+++.|.+|.++ -+||+| ..-.++|||
T Consensus 211 rqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~s--rdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLv 287 (513)
T KOG2052|consen 211 RQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSS--RDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLV 287 (513)
T ss_pred heeEEEEEecCccccceeecccc-CCceEEEEecc--cchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEe
Confidence 45666788999999999999995 99999999964 345667888887 889999 234568999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhh-----CCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLA-----DRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH-----~~~~~~i~Hrdl~ 599 (599)
+||.|+| ++||... .++-...+++|..+|.||+||| .+-+|.|+|||||
T Consensus 288 TdYHe~GSL~DyL~r~----tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlK 343 (513)
T KOG2052|consen 288 TDYHEHGSLYDYLNRN----TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLK 343 (513)
T ss_pred eecccCCcHHHHHhhc----cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccc
Confidence 9999999 9999953 4899999999999999999999 4578999999997
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-20 Score=197.74 Aligned_cols=120 Identities=24% Similarity=0.416 Sum_probs=56.2
Q ss_pred CCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECC
Q 007553 213 LLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG 292 (599)
Q Consensus 213 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls 292 (599)
.|+.|++++|.+.. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+ .++|+.|+++
T Consensus 305 sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs 375 (754)
T PRK15370 305 GITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVS 375 (754)
T ss_pred hHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECC
Confidence 34445555555542 22221 1345555555555543 333332 45555555555554 233333 2455555555
Q ss_pred CCCCccCCCccCcCCCCCCEEEcccCcCccCCCccc----cCCCCCCEEeCCCcccc
Q 007553 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEI----GNLIHLRQLDLSHNFIN 345 (599)
Q Consensus 293 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~ 345 (599)
+|++. .+|..+. .+|+.|++++|++. .+|..+ ..++.+..|++.+|.++
T Consensus 376 ~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 376 RNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 55555 2333332 24555556665555 233322 22345556666666554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-20 Score=196.54 Aligned_cols=245 Identities=28% Similarity=0.427 Sum_probs=132.4
Q ss_pred CCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeec
Q 007553 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125 (599)
Q Consensus 46 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 125 (599)
...|+++++.++ .+|..+. ++|+.|+|++|+++ .+|..+. .+|++|++++|+++ .+|..+. ++|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 455555555555 3443331 34555555555555 3343332 35555555555555 2343332 3455566665
Q ss_pred ccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCc
Q 007553 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIP 205 (599)
Q Consensus 126 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 205 (599)
|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++.. +|..+. ++|+.|++++|.++. +|
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence 5555 3343332 35566666666555 2344332 356666666665553 333221 356666666666653 33
Q ss_pred hhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCC
Q 007553 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTN 285 (599)
Q Consensus 206 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 285 (599)
..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|.+. .+|..+. ++|+.|+|++|.+. .+|..+. ..
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~s 389 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AA 389 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HH
Confidence 322 2456666677666663 444332 56777777777766 3454442 56777777777776 3444442 35
Q ss_pred CCEEECCCCCCccCCCccC----cCCCCCCEEEcccCcCc
Q 007553 286 LTSLNLGYNQLNSSIPPEL----MNCSQLQNLAVNHNSLS 321 (599)
Q Consensus 286 L~~L~ls~n~~~~~~~~~~----~~l~~L~~L~l~~n~l~ 321 (599)
|+.|++++|++. .+|..+ ..++.+..|++.+|++.
T Consensus 390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 777777777776 344433 33466777788777775
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=180.00 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=89.2
Q ss_pred ceecccCCceEEEEEeCCCCE-EEEEEecCCchh---hHHHHHHhhc--cccccC-------CCCC--Ccceeecccccc
Q 007553 489 YCIGTGGYGSVYRAQLSSGRV-VALKKLHRSETE---ELAFLETSST--DFRHYN-------SHTD--NDDSSDEHLANN 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~g~~-vavK~l~~~~~~---~~~f~~e~~~--~l~H~n-------~~~~--~~~lv~e~~~~G 553 (599)
..+|+|+||+||+|.++ |+. ||||++...... ..+|.+|+.+ +++||| ...+ .+++|||||++|
T Consensus 47 ~~iG~G~~g~V~~~~~~-g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~G 125 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKWR-GTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGG 125 (362)
T ss_pred hhcccCCceeEEEEEeC-CceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCC
Confidence 34999999999999996 665 999999765432 4589999999 899999 3333 589999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++++.+ ....++|..+++||.|||+||.|||+. .+ |||||||
T Consensus 126 sL~~~l~~~-~~~~l~~~~~l~~aldiArGm~YLH~~-~~-iIHrDLK 170 (362)
T KOG0192|consen 126 SLSVLLHKK-RKRKLPLKVRLRIALDIARGMEYLHSE-GP-IIHRDLK 170 (362)
T ss_pred cHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHhcC-CC-eeecccC
Confidence 8899864 345699999999999999999999933 22 9999997
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-21 Score=191.13 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=25.7
Q ss_pred CCCCEEECCCCCCcc----CCCccCcCCCCCCEEEcccCcCccC----CCccccCC-CCCCEEeCCCcc
Q 007553 284 TNLTSLNLGYNQLNS----SIPPELMNCSQLQNLAVNHNSLSGS----IPSEIGNL-IHLRQLDLSHNF 343 (599)
Q Consensus 284 ~~L~~L~ls~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~ 343 (599)
+.|++|++++|.++. .+...+..+++|+.+++++|.+... ....+... +.|+.+++.+|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 345555555554431 1112233334555555555555422 22222222 455555555553
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-20 Score=188.40 Aligned_cols=136 Identities=22% Similarity=0.282 Sum_probs=78.3
Q ss_pred CCCCCCCEEEccCCcCCCC----CCcccCCCCCCCEEeccCcceeec----CCcCccCCCCCCEEECCCCCCccCCCccC
Q 007553 233 GNLTYLTSLDLSSNQLSGL----LPREVGNLKYLDSLSLDRNNLIGP----IPPTIGYLTNLTSLNLGYNQLNSSIPPEL 304 (599)
Q Consensus 233 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 304 (599)
..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+. +...+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 3344455555555554421 122233344566666666555422 22334556777777777777764211111
Q ss_pred -----cCCCCCCEEEcccCcCcc----CCCccccCCCCCCEEeCCCcccccc----CCcccCCC-CCCCEEECCCCcC
Q 007553 305 -----MNCSQLQNLAVNHNSLSG----SIPSEIGNLIHLRQLDLSHNFINGT----IPSQLGKI-PNVSEVDVSKNNL 368 (599)
Q Consensus 305 -----~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~-~~L~~L~ls~n~l 368 (599)
...+.|+.|++++|.++. .+...+..+++|+.+++++|.++.. +...+... +.++.+++.+|++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 124688888888888862 2334455667888888888888744 33334344 6788888887764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-19 Score=167.79 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=95.0
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc--hh-hHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE--TE-ELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~--~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
.+|.....||+|+||+||+|+.+ ++..||||.+.... .. ......||++ +++||| ..++.+++|||
T Consensus 10 ~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVME 89 (429)
T KOG0595|consen 10 GDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVME 89 (429)
T ss_pred ccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEE
Confidence 34555556999999999999964 68999999997763 22 3457789998 999999 57888999999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||.+| .+|++.++ .++......+..|+|.||+||| +..|||||||
T Consensus 90 yC~gGDLs~yi~~~~---~l~e~t~r~Fm~QLA~alq~L~---~~~IiHRDLK 136 (429)
T KOG0595|consen 90 YCNGGDLSDYIRRRG---RLPEATARHFMQQLASALQFLH---ENNIIHRDLK 136 (429)
T ss_pred eCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCC
Confidence 99999 99999653 4899999999999999999999 9999999997
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-19 Score=175.37 Aligned_cols=107 Identities=18% Similarity=0.278 Sum_probs=95.2
Q ss_pred cceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--cc
Q 007553 488 KYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--EH 555 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~~ 555 (599)
.+.||+|.||+||.|.+.....||||.++........|.+|+.+ +++|++ ..+++++||||||++| .+
T Consensus 211 ~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~ 290 (468)
T KOG0197|consen 211 IRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLD 290 (468)
T ss_pred HHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHHH
Confidence 34599999999999999767799999998876667889999999 999999 4556799999999999 99
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 556 FLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 556 ~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
||+.+ .+..+...+.+.||.|||+||+||+ ++.+|||||
T Consensus 291 yLr~~-~~~~l~~~~Ll~~a~qIaeGM~YLe---s~~~IHRDL 329 (468)
T KOG0197|consen 291 YLRTR-EGGLLNLPQLLDFAAQIAEGMAYLE---SKNYIHRDL 329 (468)
T ss_pred Hhhhc-CCCccchHHHHHHHHHHHHHHHHHH---hCCccchhh
Confidence 99963 3456899999999999999999999 999999998
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-18 Score=180.32 Aligned_cols=113 Identities=23% Similarity=0.279 Sum_probs=95.5
Q ss_pred hhccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
.+....+.||+|.||+||+|... +.+.||||.++..+.+ ..+|.+|+++ .++||| ..+++++
T Consensus 486 ~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~ 565 (774)
T KOG1026|consen 486 SDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLC 565 (774)
T ss_pred hheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeE
Confidence 34444556999999999999863 3468999999876543 6789999999 999999 6899999
Q ss_pred eeecccccc--cccccCCCC-----------CCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 545 SSDEHLANN--EHFLSAPEN-----------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~-----------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
||+|||.+| ++||+.++. ..+|+-.+.+.||.|||.||+||- ...++||||
T Consensus 566 MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs---~~~FVHRDL 629 (774)
T KOG1026|consen 566 MVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLS---SHHFVHRDL 629 (774)
T ss_pred EEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCcccccch
Confidence 999999999 999985321 234889999999999999999999 899999998
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-20 Score=152.86 Aligned_cols=155 Identities=35% Similarity=0.572 Sum_probs=98.7
Q ss_pred CCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEE
Q 007553 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHL 121 (599)
Q Consensus 42 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 121 (599)
++.+++.|.|++|.++ .+|..++.+.+|+.|++.+|+++ .+|.+++.+++|+.|++.-|++. ..|.+|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4555666666666666 55555666666666666666666 55666666666666666666665 556666666666666
Q ss_pred eeecccccc-cCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcc
Q 007553 122 DLSLNQLSG-RLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200 (599)
Q Consensus 122 ~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 200 (599)
++.+|++.. .+|+.|-.++.|+.|.++.|.+. .+|..++.+++|+.|.+..|.+. ..|..++.+..|++|++.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 666666543 35666666666666666666664 45556666666666666666655 3556666666666666666666
Q ss_pred c
Q 007553 201 T 201 (599)
Q Consensus 201 ~ 201 (599)
+
T Consensus 186 ~ 186 (264)
T KOG0617|consen 186 T 186 (264)
T ss_pred e
Confidence 5
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-19 Score=150.70 Aligned_cols=162 Identities=36% Similarity=0.606 Sum_probs=108.5
Q ss_pred CCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEE
Q 007553 66 SLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSL 145 (599)
Q Consensus 66 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 145 (599)
.+.+.+.|.|++|+++ ..|..+..+.+|+.|++++|++. .+|.++..+++|+.|+++-|++. ..|.+|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3556666777777776 45556667777777777777776 45666777777777777777666 566677777777777
Q ss_pred ecccCccCC-CCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcC
Q 007553 146 FLDNNNLTG-PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRL 224 (599)
Q Consensus 146 ~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 224 (599)
|+.+|++.. .+|..|..++.|+.|+++.|.+. .+|..++.+++|+.|.+.+|++. .+|..++.+..|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 777776654 35556666667777777777665 45666777777777777777665 4666677777777777777777
Q ss_pred cccCcccCC
Q 007553 225 DGPIPPTIG 233 (599)
Q Consensus 225 ~~~~~~~~~ 233 (599)
+ .+|+.++
T Consensus 186 ~-vlppel~ 193 (264)
T KOG0617|consen 186 T-VLPPELA 193 (264)
T ss_pred e-ecChhhh
Confidence 6 4444433
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-17 Score=162.67 Aligned_cols=115 Identities=23% Similarity=0.311 Sum_probs=95.2
Q ss_pred HHHHhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC-------CCCCCcce
Q 007553 478 MIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN-------SHTDNDDS 545 (599)
Q Consensus 478 l~~at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n-------~~~~~~~l 545 (599)
+....+++.....||+|+||+||+|.|. | .||||.+.... .+.++|..|+.+ +-||.| ...+.+++
T Consensus 387 WeIp~~ev~l~~rIGsGsFGtV~Rg~wh-G-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~AI 464 (678)
T KOG0193|consen 387 WEIPPEEVLLGERIGSGSFGTVYRGRWH-G-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPLAI 464 (678)
T ss_pred cccCHHHhhccceeccccccceeecccc-c-ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCceee
Confidence 3333334444566999999999999985 3 59999997643 335789999998 999999 56677799
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+.|+++- +.+||..+ ..++..+...||.|||+||.||| .+.|||||||
T Consensus 465 iTqwCeGsSLY~hlHv~e--tkfdm~~~idIAqQiaqGM~YLH---AK~IIHrDLK 515 (678)
T KOG0193|consen 465 ITQWCEGSSLYTHLHVQE--TKFDMNTTIDIAQQIAQGMDYLH---AKNIIHRDLK 515 (678)
T ss_pred eehhccCchhhhhccchh--hhhhHHHHHHHHHHHHHhhhhhh---hhhhhhhhcc
Confidence 99999988 88998643 45899999999999999999999 9999999996
|
|
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-17 Score=160.05 Aligned_cols=108 Identities=28% Similarity=0.309 Sum_probs=93.4
Q ss_pred ccceecccCCceEEEEEeCCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecccccc-
Q 007553 487 IKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
..+.||+|.||+|..+....+..||||+++..+.. ..+|.+||++ +++||| ...++++||+|||++|
T Consensus 542 ~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGD 621 (807)
T KOG1094|consen 542 FKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGD 621 (807)
T ss_pred hhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCc
Confidence 34569999999999999977799999999887644 5789999998 999999 5688999999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
.+|+..+.... ++-.+-++||.|||.||+||. +..++||||
T Consensus 622 LnqFl~aheapt-~~t~~~vsi~tqiasgmaYLe---s~nfVHrd~ 663 (807)
T KOG1094|consen 622 LNQFLSAHELPT-AETAPGVSICTQIASGMAYLE---SLNFVHRDL 663 (807)
T ss_pred HHHHHHhccCcc-cccchhHHHHHHHHHHHHHHH---hhchhhccc
Confidence 99999754222 455567889999999999999 899999997
|
|
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-17 Score=164.41 Aligned_cols=108 Identities=17% Similarity=0.299 Sum_probs=92.3
Q ss_pred cccceecccCCceEEEEEeCC--C--CE-EEEEEecCC----chhhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 486 HIKYCIGTGGYGSVYRAQLSS--G--RV-VALKKLHRS----ETEELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 486 ~~~~~lg~g~~g~v~~~~~~~--g--~~-vavK~l~~~----~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
.....||+|.||.||+|++.. + .. ||||..... ..+..+|++|+.+ .++||| ...+++++|
T Consensus 160 ~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~iv 239 (474)
T KOG0194|consen 160 ELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLV 239 (474)
T ss_pred cccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEE
Confidence 334679999999999999742 3 23 899998752 2235789999999 999999 788999999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
||+|+|| .+||+..++ .+++.+++.++.|+|+||+||| ++.+|||||
T Consensus 240 mEl~~gGsL~~~L~k~~~--~v~~~ek~~~~~~AA~Gl~YLh---~k~~IHRDI 288 (474)
T KOG0194|consen 240 MELCNGGSLDDYLKKNKK--SLPTLEKLRFCYDAARGLEYLH---SKNCIHRDI 288 (474)
T ss_pred EEecCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHhHHHHHH---HCCCcchhH
Confidence 9999999 999996433 5999999999999999999999 999999997
|
|
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9e-17 Score=156.72 Aligned_cols=110 Identities=23% Similarity=0.286 Sum_probs=92.3
Q ss_pred ccccceecccCCceEEEEE-eCCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC----------CCCCCcceeec
Q 007553 485 FHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN----------SHTDNDDSSDE 548 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n----------~~~~~~~lv~e 548 (599)
|.....||+|.||.||+|+ ..+|+.||+|++.....+ .....+||.+ +++||| .....+|||+|
T Consensus 119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFe 198 (560)
T KOG0600|consen 119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFE 198 (560)
T ss_pred HHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEe
Confidence 4444559999999999999 678999999999765422 3557789998 999999 23578999999
Q ss_pred ccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||++. .-++... ...++..+..-++.|+..||+|+| ..+|+|||||
T Consensus 199 YMdhDL~GLl~~p--~vkft~~qIKc~mkQLl~Gl~~cH---~~gvlHRDIK 245 (560)
T KOG0600|consen 199 YMDHDLSGLLSSP--GVKFTEPQIKCYMKQLLEGLEYCH---SRGVLHRDIK 245 (560)
T ss_pred cccchhhhhhcCC--CcccChHHHHHHHHHHHHHHHHHh---hcCeeecccc
Confidence 99999 7777742 345899999999999999999999 9999999997
|
|
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-16 Score=141.15 Aligned_cols=110 Identities=21% Similarity=0.244 Sum_probs=95.1
Q ss_pred ccccceecccCCceEEEEE-eCCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|...+.+|+|.||.||+|+ ..+|+.||||+++..... ...-++||+. +++||| ...+.+.+|+|||
T Consensus 4 Y~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm 83 (318)
T KOG0659|consen 4 YEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFM 83 (318)
T ss_pred hhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEec
Confidence 3345669999999999999 567999999999876433 4678899998 999999 5788899999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+.. +..++++ ...++-++...++.++.+|++|+| ..-|+|||||
T Consensus 84 ~tdLe~vIkd~--~i~l~pa~iK~y~~m~LkGl~y~H---~~~IlHRDlK 128 (318)
T KOG0659|consen 84 PTDLEVVIKDK--NIILSPADIKSYMLMTLKGLAYCH---SKWILHRDLK 128 (318)
T ss_pred cccHHHHhccc--ccccCHHHHHHHHHHHHHHHHHHH---hhhhhcccCC
Confidence 999 8888763 456899999999999999999999 9999999997
|
|
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.8e-17 Score=164.40 Aligned_cols=108 Identities=18% Similarity=0.263 Sum_probs=91.0
Q ss_pred cccceecccCCceEEEEEe-CCC----CEEEEEEecCCchh--hHHHHHHhhc--cccccC-------CCCCCcceeecc
Q 007553 486 HIKYCIGTGGYGSVYRAQL-SSG----RVVALKKLHRSETE--ELAFLETSST--DFRHYN-------SHTDNDDSSDEH 549 (599)
Q Consensus 486 ~~~~~lg~g~~g~v~~~~~-~~g----~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~ 549 (599)
....+||+|.||+||||.| +.| .+||+|.+...... ..++++|+-. +++||| .....+.+|++|
T Consensus 699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlvtq~ 778 (1177)
T KOG1025|consen 699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLSTLQLVTQL 778 (1177)
T ss_pred hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccchHHHHHHh
Confidence 3456799999999999996 444 47899998665433 5789999877 999999 455569999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
||.| .+|++.++.. +.....+.++.|||+||.||| ..+++||||
T Consensus 779 mP~G~LlDyvr~hr~~--igsq~lLnw~~QIAkgM~YLe---~qrlVHrdL 824 (1177)
T KOG1025|consen 779 MPLGCLLDYVREHRDN--IGSQDLLNWCYQIAKGMKYLE---EQRLVHRDL 824 (1177)
T ss_pred cccchHHHHHHHhhcc--ccHHHHHHHHHHHHHHHHHHH---hcchhhhhh
Confidence 9999 9999976544 888889999999999999999 999999998
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-16 Score=155.08 Aligned_cols=110 Identities=19% Similarity=0.216 Sum_probs=95.9
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
.|...++||+|+|+.||.++- ..|+.||+|++.... .+.....+||++ +|+||| .+.+..|||.|
T Consensus 19 ~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLE 98 (592)
T KOG0575|consen 19 RYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLE 98 (592)
T ss_pred eeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEE
Confidence 466678899999999999995 889999999997632 335678899999 999999 57888999999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|++| .+++. .+++++..+...+..||..||.||| ..+|+|||||
T Consensus 99 LC~~~sL~el~K---rrk~ltEpEary~l~QIv~GlkYLH---~~~IiHRDLK 145 (592)
T KOG0575|consen 99 LCHRGSLMELLK---RRKPLTEPEARYFLRQIVEGLKYLH---SLGIIHRDLK 145 (592)
T ss_pred ecCCccHHHHHH---hcCCCCcHHHHHHHHHHHHHHHHHH---hcCceecccc
Confidence 99999 66666 2456999999999999999999999 8899999997
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-16 Score=166.32 Aligned_cols=111 Identities=23% Similarity=0.314 Sum_probs=95.0
Q ss_pred ccccceecccCCceEEEEEeCC--CC----EEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 485 FHIKYCIGTGGYGSVYRAQLSS--GR----VVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~~--g~----~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
....+.||+|.||.||.|++.+ |. .||||.+.... .+..+|.+|..+ +++||| .++.+.+++
T Consensus 694 v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~ 773 (1025)
T KOG1095|consen 694 VTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLIL 773 (1025)
T ss_pred eEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEE
Confidence 3445779999999999999743 33 48999998764 336789999988 999999 678899999
Q ss_pred ecccccc--cccccCCC----CCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 547 DEHLANN--EHFLSAPE----NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~----~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
+|||++| ..||+..+ +...++..+.+.||.|||+||.||+ ++++|||||
T Consensus 774 leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe---~~~fvHRDL 828 (1025)
T KOG1095|consen 774 LEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE---SKHFVHRDL 828 (1025)
T ss_pred ehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH---hCCCcCcch
Confidence 9999999 99999742 2456899999999999999999999 999999998
|
|
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-16 Score=144.65 Aligned_cols=112 Identities=24% Similarity=0.258 Sum_probs=93.7
Q ss_pred hhccccceecccCCceEEEEE-eCCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC----------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN----------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n----------~~~~~~~lv 546 (599)
++|..-+.|++|.||.||+|+ -++++.||.|+++..... .-.-++||.+ +++||| .+-+..|||
T Consensus 76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~V 155 (419)
T KOG0663|consen 76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIV 155 (419)
T ss_pred HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeee
Confidence 345556779999999999999 467899999999775422 3467889988 999999 566779999
Q ss_pred ecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||++. +..++.-+ .++...+..-+..|+.+|++||| ..-|+|||||
T Consensus 156 Me~~EhDLksl~d~m~--q~F~~~evK~L~~QlL~glk~lH---~~wilHRDLK 204 (419)
T KOG0663|consen 156 MEYVEHDLKSLMETMK--QPFLPGEVKTLMLQLLRGLKHLH---DNWILHRDLK 204 (419)
T ss_pred HHHHHhhHHHHHHhcc--CCCchHHHHHHHHHHHHHHHHHh---hceeEecccc
Confidence 9999999 88887533 34778888889999999999999 8999999997
|
|
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-16 Score=152.24 Aligned_cols=110 Identities=21% Similarity=0.206 Sum_probs=92.4
Q ss_pred ccccceecccCCceEEEEE-eCCCCEEEEEEecCCchhhHH--HHHHhhc--ccc-ccC--------CCCC-Ccceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELA--FLETSST--DFR-HYN--------SHTD-NDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~~~~--f~~e~~~--~l~-H~n--------~~~~-~~~lv~e~ 549 (599)
|...+.+|.|.||.||+|+ ...|..||||+++..-..+++ -++|+.. +++ ||| .+.+ .+++||||
T Consensus 12 Y~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~ 91 (538)
T KOG0661|consen 12 YTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEF 91 (538)
T ss_pred HHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHh
Confidence 3334569999999999999 467999999999775444443 5568876 999 999 3444 89999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+.. ++.+.++ +..++..++..|+.||.+||+|+| ..|++|||||
T Consensus 92 Md~NLYqLmK~R--~r~fse~~irnim~QilqGL~hiH---k~GfFHRDlK 137 (538)
T KOG0661|consen 92 MDCNLYQLMKDR--NRLFSESDIRNIMYQILQGLAHIH---KHGFFHRDLK 137 (538)
T ss_pred hhhhHHHHHhhc--CCcCCHHHHHHHHHHHHHHHHHHH---hcCcccccCC
Confidence 9999 9988865 567999999999999999999999 8999999997
|
|
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.4e-16 Score=136.06 Aligned_cols=114 Identities=22% Similarity=0.208 Sum_probs=96.6
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
.++|...+.+|+|.||.||.|+.+ ++-.||+|.+..+... ..++.+||++ .++||| ++....|++
T Consensus 21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi 100 (281)
T KOG0580|consen 21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI 100 (281)
T ss_pred hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence 456777888999999999999964 5778999999765422 5678999999 999999 788889999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||.+.| ...|+..+ ..+++......+..|+|.|+.|+| .+.|||||+|
T Consensus 101 lEya~~gel~k~L~~~~-~~~f~e~~~a~Yi~q~A~Al~y~h---~k~VIhRdiK 151 (281)
T KOG0580|consen 101 LEYAPRGELYKDLQEGR-MKRFDEQRAATYIKQLANALLYCH---LKRVIHRDIK 151 (281)
T ss_pred EEecCCchHHHHHHhcc-cccccccchhHHHHHHHHHHHHhc---cCCcccCCCC
Confidence 9999999 77787432 345778888889999999999999 9999999986
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-15 Score=143.00 Aligned_cols=116 Identities=17% Similarity=0.211 Sum_probs=93.7
Q ss_pred cccHHHHHHHhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------C
Q 007553 472 RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------S 538 (599)
Q Consensus 472 ~~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~ 538 (599)
.++..|++. .+.||+|..|+|||+..+ +++.+|.|.+...... .++..+|+++ +.+||+ .
T Consensus 75 ~i~~~dle~-------~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~ 147 (364)
T KOG0581|consen 75 GISLSDLER-------LGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFY 147 (364)
T ss_pred ccCHHHhhh-------hhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEE
Confidence 356666654 355999999999999974 6889999999544332 5788999999 889999 3
Q ss_pred CCC-Ccceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 HTD-NDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 ~~~-~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
... +..++||||.+| ++++..- ..++....-+||.+|.+||.|||+ ..+|||||+|
T Consensus 148 ~~~~~isI~mEYMDgGSLd~~~k~~---g~i~E~~L~~ia~~VL~GL~YLh~--~~~IIHRDIK 206 (364)
T KOG0581|consen 148 SNGEEISICMEYMDGGSLDDILKRV---GRIPEPVLGKIARAVLRGLSYLHE--ERKIIHRDIK 206 (364)
T ss_pred eCCceEEeehhhcCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhh--ccCeeeccCC
Confidence 444 699999999999 6666632 348889999999999999999994 3999999997
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-16 Score=153.21 Aligned_cols=119 Identities=22% Similarity=0.277 Sum_probs=101.7
Q ss_pred HHHHHHhhhccccceecccCCceEEEEEeCC-CCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 476 EEMIQATEDFHIKYCIGTGGYGSVYRAQLSS-GRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 476 ~~l~~at~~~~~~~~lg~g~~g~v~~~~~~~-g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
++++-...++...+.+|-|.||.||.|.|+. ...||||.++....+..+|++|..+ .++||| ..+.+.|
T Consensus 260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFY 339 (1157)
T KOG4278|consen 260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFY 339 (1157)
T ss_pred chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeE
Confidence 4444444566777889999999999999864 5689999999887788999999998 999999 5677889
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
+|+|||.+| -+||+.. ++..+.-...+.||.||+.||+||. .+-+|||||
T Consensus 340 IiTEfM~yGNLLdYLRec-nr~ev~avvLlyMAtQIsSaMeYLE---kknFIHRDL 391 (1157)
T KOG4278|consen 340 IITEFMCYGNLLDYLREC-NRSEVPAVVLLYMATQISSAMEYLE---KKNFIHRDL 391 (1157)
T ss_pred EEEecccCccHHHHHHHh-chhhcchhHHHHHHHHHHHHHHHHH---Hhhhhhhhh
Confidence 999999999 9999963 2345677789999999999999999 999999998
|
|
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-15 Score=143.36 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=86.9
Q ss_pred cccceecccCCceEEEEE-eCCCCEEEEEEecCCch--------hhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 486 HIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSET--------EELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 486 ~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~--------~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
...+.+|+|+||.|-+|. -.+|+.||||++..... ......+|+++ +++||| ...+..|||
T Consensus 175 ii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~YmV 254 (475)
T KOG0615|consen 175 IISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSYMV 254 (475)
T ss_pred EeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCceEEE
Confidence 345679999999999998 46799999999965321 12335689998 999999 466777999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|||++| .+++-.. ..+....-..++.|+..|+.||| +.+|+|||||
T Consensus 255 lE~v~GGeLfd~vv~n---k~l~ed~~K~~f~Qll~avkYLH---~~GI~HRDiK 303 (475)
T KOG0615|consen 255 LEYVEGGELFDKVVAN---KYLREDLGKLLFKQLLTAVKYLH---SQGIIHRDIK 303 (475)
T ss_pred EEEecCccHHHHHHhc---cccccchhHHHHHHHHHHHHHHH---HcCcccccCC
Confidence 9999999 5555532 23666667889999999999999 9999999997
|
|
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-15 Score=143.86 Aligned_cols=112 Identities=22% Similarity=0.297 Sum_probs=93.5
Q ss_pred hhccccceecccCCceEEEEEeC----CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS----SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
++|...+.||+|+||.||+|++. .+..||+|+++.... ....|.+|+.+ .++||| ..++..++|
T Consensus 5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 84 (266)
T cd05064 5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV 84 (266)
T ss_pred HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence 45666788999999999999863 356899999976532 24578899988 899999 466789999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++..+. ..++|.+.+.++.||++||+||| ..+++||||+
T Consensus 85 ~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~~i~~al~~lH---~~~iiH~dik 134 (266)
T cd05064 85 TEYMSNGALDSFLRKHE--GQLVAGQLMGMLPGLASGMKYLS---EMGYVHKGLA 134 (266)
T ss_pred EEeCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccc
Confidence 9999999 88887532 35899999999999999999999 8899999986
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-15 Score=150.37 Aligned_cols=107 Identities=22% Similarity=0.246 Sum_probs=86.4
Q ss_pred ccHHHHHHHhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCC
Q 007553 473 ITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDN 542 (599)
Q Consensus 473 ~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~ 542 (599)
+.|+++.+- .-+|.|.-|.||.|+++ ++.||||+++.... .+|+. +++||| .....
T Consensus 121 iPFe~IsEL-------eWlGSGaQGAVF~Grl~-netVAVKKV~elkE------TdIKHLRkLkH~NII~FkGVCtqsPc 186 (904)
T KOG4721|consen 121 IPFEEISEL-------EWLGSGAQGAVFLGRLH-NETVAVKKVRELKE------TDIKHLRKLKHPNIITFKGVCTQSPC 186 (904)
T ss_pred CCHHHhhhh-------hhhccCcccceeeeecc-CceehhHHHhhhhh------hhHHHHHhccCcceeeEeeeecCCce
Confidence 455655543 23999999999999995 88999998854321 24444 999999 56778
Q ss_pred cceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++||||++.| .+.|+. +.+++..-.+++..|||.||.||| ..+|||||||
T Consensus 187 yCIiMEfCa~GqL~~VLka---~~~itp~llv~Wsk~IA~GM~YLH---~hKIIHRDLK 239 (904)
T KOG4721|consen 187 YCIIMEFCAQGQLYEVLKA---GRPITPSLLVDWSKGIAGGMNYLH---LHKIIHRDLK 239 (904)
T ss_pred eEEeeeccccccHHHHHhc---cCccCHHHHHHHHHHhhhhhHHHH---HhhHhhhccC
Confidence 89999999999 888884 345777888999999999999999 8899999997
|
|
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-14 Score=141.33 Aligned_cols=112 Identities=17% Similarity=0.197 Sum_probs=91.8
Q ss_pred hhccccceecccCCceEEEEE-eCCCCEEEEEEecCCchh---------------hHHHHHHhhc--cccccC-------
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE---------------ELAFLETSST--DFRHYN------- 537 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~---------------~~~f~~e~~~--~l~H~n------- 537 (599)
+.|.....||+|.||.|-+|. ..+++.||+|.+...... -+...+||.+ +++|||
T Consensus 97 Nqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEv 176 (576)
T KOG0585|consen 97 NQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEV 176 (576)
T ss_pred hheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEe
Confidence 345555669999999999998 457999999998543211 1367889998 999999
Q ss_pred ---CCCCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 ---SHTDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ---~~~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+.+|||+|||..| -+|.-..+ ..++..++.++..||..||.||| ..+|||||||
T Consensus 177 LDDP~s~~~YlVley~s~G~v~w~p~d~--~els~~~Ar~ylrDvv~GLEYLH---~QgiiHRDIK 237 (576)
T KOG0585|consen 177 LDDPESDKLYLVLEYCSKGEVKWCPPDK--PELSEQQARKYLRDVVLGLEYLH---YQGIIHRDIK 237 (576)
T ss_pred ecCcccCceEEEEEeccCCccccCCCCc--ccccHHHHHHHHHHHHHHHHHHH---hcCeeccccc
Confidence 4678899999999999 77766432 23899999999999999999999 9999999997
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-15 Score=148.41 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=90.5
Q ss_pred hhhccccceecccCCceEEEEEe------CCCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC---------CCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSET--EELAFLETSST--DF-RHYN---------SHTD 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n---------~~~~ 541 (599)
.++|...+.||+|+||.||+|.. .++..||||++..... ....+.+|+.+ .+ +||| ....
T Consensus 6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~ 85 (338)
T cd05102 6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNG 85 (338)
T ss_pred hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCC
Confidence 45676678899999999999974 2356899999975432 24568889888 77 8999 2244
Q ss_pred Ccceeecccccc--cccccCCCC---------------------------------------------------------
Q 007553 542 NDDSSDEHLANN--EHFLSAPEN--------------------------------------------------------- 562 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~~--------------------------------------------------------- 562 (599)
..++||||+++| .+++.....
T Consensus 86 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
T cd05102 86 PLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDD 165 (338)
T ss_pred ceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccc
Confidence 678999999999 777764210
Q ss_pred --CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 563 --YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 563 --~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..+++|.+.+.++.||++||+||| ..+|+|||||
T Consensus 166 ~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDiK 201 (338)
T cd05102 166 LWKSPLTMEDLICYSFQVARGMEFLA---SRKCIHRDLA 201 (338)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCc
Confidence 134888999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=144.64 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=89.6
Q ss_pred ceecccCCceEEEEE-eCCCCEEEEEEecCCchhh-HHHHHHhhc--cccccC--------CCCCCcceeecccccc--c
Q 007553 489 YCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE-LAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--E 554 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~~-~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~ 554 (599)
..||+|..|.||.+. ..+++.||||++....+.. +-.++|+.+ ..+|+| ...+++|+|||||++| .
T Consensus 279 ~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLT 358 (550)
T KOG0578|consen 279 KKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLT 358 (550)
T ss_pred hhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCchh
Confidence 459999999999988 5678999999998766553 447788888 999999 5679999999999999 6
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 555 HFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 555 ~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+.+.. ..++..++..|+.++..||+||| ..+|+|||||
T Consensus 359 DvVt~----~~~~E~qIA~Icre~l~aL~fLH---~~gIiHrDIK 396 (550)
T KOG0578|consen 359 DVVTK----TRMTEGQIAAICREILQGLKFLH---ARGIIHRDIK 396 (550)
T ss_pred hhhhc----ccccHHHHHHHHHHHHHHHHHHH---hcceeeeccc
Confidence 65553 23899999999999999999999 9999999996
|
|
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=138.97 Aligned_cols=112 Identities=16% Similarity=0.243 Sum_probs=94.8
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
.+|.....||+|+||.||++.+.++..+|+|.+.........|.+|+.+ +++||| ...+..++||||+++
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~ 83 (256)
T cd05114 4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMEN 83 (256)
T ss_pred HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCC
Confidence 3466667799999999999998888899999987654445678889888 999999 456778999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .++++... ..++|..+..++.||+.||+||| ..+|+||||+
T Consensus 84 ~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~ 127 (256)
T cd05114 84 GCLLNYLRQRQ--GKLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLA 127 (256)
T ss_pred CcHHHHHHhCc--cCCCHHHHHHHHHHHHHHHHHHH---HCCccccccC
Confidence 9 77777433 24899999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-15 Score=150.22 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=94.5
Q ss_pred cceecccCCceEEEEE-eCCCCEEEEEEecCCc--hhhHHHHHHhhc--cccccC------C--------CCCCcceeec
Q 007553 488 KYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSE--TEELAFLETSST--DFRHYN------S--------HTDNDDSSDE 548 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n------~--------~~~~~~lv~e 548 (599)
...+|+|+||.||+|+ -..|..||||..+... .....+.+|+++ +++||| . ......+|||
T Consensus 18 ~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmE 97 (732)
T KOG4250|consen 18 DERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVME 97 (732)
T ss_pred hhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEe
Confidence 4569999999999999 5689999999997754 235678899999 999999 1 1344579999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| +.+|....+...|...+.+.+..+++.||.||| ..+|+|||||
T Consensus 98 yC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~Lr---En~IvHRDlK 147 (732)
T KOG4250|consen 98 YCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLR---ENGIVHRDLK 147 (732)
T ss_pred ecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHH---HcCceeccCC
Confidence 99999 999998777778999999999999999999999 8899999997
|
|
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-14 Score=133.09 Aligned_cols=106 Identities=21% Similarity=0.173 Sum_probs=87.0
Q ss_pred ceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeecccccc-
Q 007553 489 YCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
..+|+|+||+|||++- ++|+.||||++-.+..+ ..--++||++ .++||| -....+++|+||++.-
T Consensus 8 gkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~dhTv 87 (396)
T KOG0593|consen 8 GKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCDHTV 87 (396)
T ss_pred hccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecchHH
Confidence 4589999999999995 46999999999765443 3457889998 999999 4667789999999988
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
-+-|.....+ ++.....+++.|+++|+.|+| +..|||||+|
T Consensus 88 L~eLe~~p~G--~~~~~vk~~l~Q~l~ai~~cH---k~n~IHRDIK 128 (396)
T KOG0593|consen 88 LHELERYPNG--VPSELVKKYLYQLLKAIHFCH---KNNCIHRDIK 128 (396)
T ss_pred HHHHHhccCC--CCHHHHHHHHHHHHHHhhhhh---hcCeecccCC
Confidence 4345433333 777788999999999999999 8889999996
|
|
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-14 Score=141.42 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=84.9
Q ss_pred eecccCCceEEEEEeCC-------------------------CCEEEEEEecCCchh-hHHHHHHhhc--cccccC----
Q 007553 490 CIGTGGYGSVYRAQLSS-------------------------GRVVALKKLHRSETE-ELAFLETSST--DFRHYN---- 537 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~-------------------------g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n---- 537 (599)
.||+|+||.||+|.+.. ...||+|.+...... ..+|.+|+.+ .++|||
T Consensus 2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~ 81 (274)
T cd05076 2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV 81 (274)
T ss_pred CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence 48999999999998521 135899998764433 4568888877 899999
Q ss_pred ----CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 ----SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ----~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+..++||||+++| ..++... ...++|..++.++.|||+||+||| ..+|+||||+
T Consensus 82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlk 144 (274)
T cd05076 82 HGVCVRGSENIMVEEFVEHGPLDVCLRKE--KGRVPVAWKITVAQQLASALSYLE---DKNLVHGNVC 144 (274)
T ss_pred EEEEEeCCceEEEEecCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---cCCccCCCCC
Confidence 4567789999999999 7777642 235889999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-14 Score=141.94 Aligned_cols=113 Identities=22% Similarity=0.263 Sum_probs=90.4
Q ss_pred hccccceecccCCceEEEEEeCC-----------------CCEEEEEEecCCch--hhHHHHHHhhc--cccccC-----
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSS-----------------GRVVALKKLHRSET--EELAFLETSST--DFRHYN----- 537 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~-----------------g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n----- 537 (599)
+|...+.||+|+||.||+|..++ +..||+|.+..... ...+|.+|+.+ +++|||
T Consensus 6 ~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~ 85 (304)
T cd05096 6 HLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLL 85 (304)
T ss_pred hCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEE
Confidence 45566789999999999997532 34799999876432 24578999988 999999
Q ss_pred ---CCCCCcceeecccccc--cccccCCC----------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccc
Q 007553 538 ---SHTDNDDSSDEHLANN--EHFLSAPE----------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQ 596 (599)
Q Consensus 538 ---~~~~~~~lv~e~~~~G--~~~l~~~~----------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hr 596 (599)
...+..++||||+++| .+++.... ....++|.+...++.|||+||+||| ..+|+||
T Consensus 86 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~ivH~ 162 (304)
T cd05096 86 GVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLS---SLNFVHR 162 (304)
T ss_pred EEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH---HCCcccc
Confidence 4567789999999999 77775321 1235789999999999999999999 7899999
Q ss_pred ccC
Q 007553 597 RLY 599 (599)
Q Consensus 597 dl~ 599 (599)
||+
T Consensus 163 dlk 165 (304)
T cd05096 163 DLA 165 (304)
T ss_pred Ccc
Confidence 996
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-14 Score=146.33 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=91.5
Q ss_pred hhhccccceecccCCceEEEEEe------CCCCEEEEEEecCCc--hhhHHHHHHhhc--cc-cccC--------CCCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSE--TEELAFLETSST--DF-RHYN--------SHTDN 542 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~--~~~~~f~~e~~~--~l-~H~n--------~~~~~ 542 (599)
.++|...+.||+|+||.||+|+. ..+..||||+++... .....+.+|+.+ .+ +||| ..++.
T Consensus 34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~ 113 (375)
T cd05104 34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGP 113 (375)
T ss_pred hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCc
Confidence 34566678899999999999973 235689999997543 224568889988 67 8999 46778
Q ss_pred cceeecccccc--cccccCCC-----------------------------------------------------------
Q 007553 543 DDSSDEHLANN--EHFLSAPE----------------------------------------------------------- 561 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~----------------------------------------------------------- 561 (599)
.++||||+++| .++++.+.
T Consensus 114 ~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (375)
T cd05104 114 TLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGS 193 (375)
T ss_pred ceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccce
Confidence 89999999999 77775321
Q ss_pred -------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 562 -------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 562 -------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
....++|.+..+++.|||+||+||| ..+|+||||+
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlk 241 (375)
T cd05104 194 YIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLA---SKNCIHRDLA 241 (375)
T ss_pred ecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCc
Confidence 0125789999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-14 Score=140.66 Aligned_cols=110 Identities=19% Similarity=0.157 Sum_probs=91.5
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|+||.||+|... +|+.||+|++..... ....+.+|+.+ .++||| .+.+..++|||
T Consensus 2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 81 (291)
T cd05612 2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLME 81 (291)
T ss_pred CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEe
Confidence 4556678999999999999964 689999999865321 23457788887 999999 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++..+ ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk 128 (291)
T cd05612 82 YVPGGELFSYLRNS---GRFSNSTGLFYASEIVCALEYLH---SKEIVYRDLK 128 (291)
T ss_pred CCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence 99999 8888743 34889999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-15 Score=134.22 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=91.6
Q ss_pred ccccceecccCCceEEEEE-eCCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC---------C-CCCCcceeec
Q 007553 485 FHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN---------S-HTDNDDSSDE 548 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n---------~-~~~~~~lv~e 548 (599)
|.....||+|+||+|||+. +.+|..||.|.+.-.. ...+..++||.+ .++||| . +.+.+.+|||
T Consensus 21 y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE 100 (375)
T KOG0591|consen 21 YQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVME 100 (375)
T ss_pred HHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHH
Confidence 3344569999999999988 6789999999987432 235679999999 999999 2 3344899999
Q ss_pred ccccc--cccccC-CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcc--ccccccC
Q 007553 549 HLANN--EHFLSA-PENYERVDFSPDFSIADQSKKGFKLLADRKYRK--SYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~-~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~--i~Hrdl~ 599 (599)
|+..| .+.++. ++....+......++..|.++||.++|. .-++ |+|||||
T Consensus 101 ~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~-~~~r~~VmHRDIK 155 (375)
T KOG0591|consen 101 LCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHS-KIPRGTVMHRDIK 155 (375)
T ss_pred hhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhc-cccccceeeccCc
Confidence 99999 666664 3345568889999999999999999994 2366 9999997
|
|
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-14 Score=139.53 Aligned_cols=108 Identities=28% Similarity=0.308 Sum_probs=88.1
Q ss_pred cceecccCCceEEEEEeC-----CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 488 KYCIGTGGYGSVYRAQLS-----SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~-----~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
...||.|.||.||+|.+. .+..|+||.+..... ...+|.+|+.. +++||| ...+..++||||+
T Consensus 4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~ 83 (259)
T PF07714_consen 4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYC 83 (259)
T ss_dssp EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--
T ss_pred eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence 356999999999999985 257899999965432 25789999988 899999 4566789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .++|+.+ ....++|.++.+|+.|||+||+||| ..+|+||||.
T Consensus 84 ~~g~L~~~L~~~-~~~~~~~~~~~~i~~~i~~~l~~Lh---~~~iiH~~l~ 130 (259)
T PF07714_consen 84 PGGSLDDYLKSK-NKEPLSEQQRLSIAIQIAEALSYLH---SNNIIHGNLS 130 (259)
T ss_dssp TTEBHHHHHHHT-CTTTSBHHHHHHHHHHHHHHHHHHH---HTTEEEST-S
T ss_pred cccccccccccc-ccccccccccccccccccccccccc---cccccccccc
Confidence 999 8899864 2345899999999999999999999 6789999984
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-14 Score=141.35 Aligned_cols=111 Identities=17% Similarity=0.275 Sum_probs=90.7
Q ss_pred hccccceecccCCceEEEEEeC-CCC----EEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCcceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGR----VVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~----~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~ 547 (599)
+|...+.||+|+||.||+|.+. +|+ .||||.+..... ...+|.+|+.+ .++||| ...+..++|+
T Consensus 8 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~v~ 87 (316)
T cd05108 8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT 87 (316)
T ss_pred hceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCceeee
Confidence 5777788999999999999863 344 389999875432 24678888887 999999 3445678999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++.... ..++|...+.++.|||+||+||| +.+|+||||+
T Consensus 88 e~~~~g~l~~~l~~~~--~~~~~~~~~~~~~qi~~~L~~LH---~~~iiH~dlk 136 (316)
T cd05108 88 QLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLE---ERRLVHRDLA 136 (316)
T ss_pred ecCCCCCHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHH---hcCeeccccc
Confidence 999999 88887533 34889999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-14 Score=135.66 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=90.9
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh-hHHHHHHhhc--cccccC---C-----CCC--Ccceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE-ELAFLETSST--DFRHYN---S-----HTD--NDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n---~-----~~~--~~~lv~e~~ 550 (599)
+...+.||+|+||.||.+... +|...|||........ .....+|+.+ +++||| . ..+ .+.+.|||+
T Consensus 19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~ 98 (313)
T KOG0198|consen 19 WSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYA 98 (313)
T ss_pred hhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeecc
Confidence 444567999999999999964 4899999998765322 3457889988 999999 1 222 588999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++...++ .++.......+.||.+||+||| +++|+|||||
T Consensus 99 ~~GsL~~~~~~~g~--~l~E~~v~~ytr~iL~GL~ylH---s~g~vH~DiK 144 (313)
T KOG0198|consen 99 PGGSLSDLIKRYGG--KLPEPLVRRYTRQILEGLAYLH---SKGIVHCDIK 144 (313)
T ss_pred CCCcHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHH---hCCEeccCcc
Confidence 999 888885433 5999999999999999999999 9999999997
|
|
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-14 Score=144.18 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=90.9
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|+||.||++.. .+|+.||||.+..... ....+.+|+.+ .++||+ ...+..++|||
T Consensus 2 ~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E 81 (363)
T cd05628 2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIME 81 (363)
T ss_pred CceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEc
Confidence 566678899999999999985 4689999999965321 13456678777 899999 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++..+ ..+++.+...++.||+.||+||| +.+|+||||+
T Consensus 82 ~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~lH---~~givHrDlK 128 (363)
T cd05628 82 FLPGGDMMTLLMKK---DTLTEEETQFYIAETVLAIDSIH---QLGFIHRDIK 128 (363)
T ss_pred CCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCC
Confidence 99999 7777642 35899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-14 Score=135.94 Aligned_cols=113 Identities=20% Similarity=0.283 Sum_probs=95.8
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
++|...+.||+|+||.||+|...+++.||+|.+.........|.+|+.+ .++||| ...+..++||||+++
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 85 (261)
T cd05072 6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAK 85 (261)
T ss_pred HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCC
Confidence 4566677899999999999998888899999987655445678889888 999999 566778999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .++++... ...++|.+++.++.|+++|++||| ..+++||||+
T Consensus 86 ~~L~~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~ 130 (261)
T cd05072 86 GSLLDFLKSDE-GGKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLR 130 (261)
T ss_pred CcHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccc
Confidence 9 88886432 335899999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.1e-15 Score=145.28 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=90.7
Q ss_pred cceecccCCceEEEEE-eCCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 488 KYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
-+.||.|+||.||-++ .++.++||||++..+..+ |...++|+.- +++||| ......|+|||||-|
T Consensus 31 LrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYClG 110 (948)
T KOG0577|consen 31 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCLG 110 (948)
T ss_pred HHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHhc
Confidence 3449999999999988 457889999999776443 6788899987 999999 456677999999998
Q ss_pred c-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
. .+.|.-++ +++....+..|+.|+..||+||| +.+.||||+|
T Consensus 111 SAsDlleVhk--KplqEvEIAAi~~gaL~gLaYLH---S~~~IHRDiK 153 (948)
T KOG0577|consen 111 SASDLLEVHK--KPLQEVEIAAITHGALQGLAYLH---SHNRIHRDIK 153 (948)
T ss_pred cHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHH---HhhHHhhhcc
Confidence 8 88876533 45888899999999999999999 8899999996
|
|
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-14 Score=136.21 Aligned_cols=114 Identities=17% Similarity=0.242 Sum_probs=96.7
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
.++|...+.||+|++|.||+|...+++.||||.++.......+|.+|+.+ +++||| ...+..++||||++
T Consensus 5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 84 (261)
T cd05068 5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMK 84 (261)
T ss_pred hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeeccc
Confidence 34577778899999999999998778889999997655445678889887 999999 45677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.... ...++|.+...++.|++.|++||| ..+|+||||+
T Consensus 85 ~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~ 130 (261)
T cd05068 85 YGSLLEYLQGGA-GRALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLA 130 (261)
T ss_pred CCcHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCC
Confidence 99 88887533 345899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-14 Score=138.93 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=90.4
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
|...+.||+|+||.||+|.. .+|+.||||.+...... ...+.+|+.+ .++|++ ...+..++||||
T Consensus 2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~ 81 (285)
T cd05631 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI 81 (285)
T ss_pred ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence 45567899999999999985 57999999998654321 3457788888 999999 466778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++.... ...+++.+...++.|++.||+||| ..+|+||||+
T Consensus 82 ~~~g~L~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dik 129 (285)
T cd05631 82 MNGGDLKFHIYNMG-NPGFDEQRAIFYAAELCCGLEDLQ---RERIVYRDLK 129 (285)
T ss_pred cCCCcHHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCC
Confidence 9999 55665322 335899999999999999999999 8899999996
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-14 Score=134.62 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=90.7
Q ss_pred ccccceecccCCceEEEEE-eCCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC---------CCCC------Cc
Q 007553 485 FHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN---------SHTD------ND 543 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n---------~~~~------~~ 543 (599)
|..-+.+|+|.||+||+|+ ..+|+.||+|+++....+ ...-++|+.+ +++|+| ...+ .+
T Consensus 13 ~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l 92 (323)
T KOG0594|consen 13 YEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKL 92 (323)
T ss_pred HHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceE
Confidence 3334459999999999999 467999999999776442 4567889988 999999 2333 67
Q ss_pred ceeecccccc-cccccCCCCC-CCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN-EHFLSAPENY-ERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G-~~~l~~~~~~-~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|+||+... .+|+...... ..++-.....+..|+.+||+||| +.+|+|||||
T Consensus 93 ~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H---~~~IlHRDLK 147 (323)
T KOG0594|consen 93 YLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLH---SHGILHRDLK 147 (323)
T ss_pred EEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCC
Confidence 8999999999 9999864321 34666788999999999999999 8999999997
|
|
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-14 Score=144.81 Aligned_cols=110 Identities=16% Similarity=0.123 Sum_probs=91.7
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+|+.+ .++||| ...+..++|||
T Consensus 2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E 81 (364)
T cd05599 2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIME 81 (364)
T ss_pred CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEEC
Confidence 566678899999999999985 468999999996532 123456778888 999999 46778899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++..+ ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 82 ~~~~g~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlk 128 (364)
T cd05599 82 YLPGGDMMTLLMKK---DTFTEEETRFYIAETILAIDSIH---KLGYIHRDIK 128 (364)
T ss_pred CCCCcHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCC
Confidence 99999 7777642 34899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-14 Score=135.19 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=93.3
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
+|.....||+|+||.||+|...++..+|||.+........+|.+|+.+ +++||| ...+..++||||+++|
T Consensus 5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~ 84 (256)
T cd05113 5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNG 84 (256)
T ss_pred HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCC
Confidence 455567799999999999998777789999987654445678899888 999999 4566789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... ..++|.+++.++.||+.|++||| ..+++||||+
T Consensus 85 ~l~~~i~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~ 127 (256)
T cd05113 85 CLLNYLREHG--KRFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLA 127 (256)
T ss_pred cHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccC
Confidence 77886432 25899999999999999999999 8899999985
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-14 Score=149.38 Aligned_cols=113 Identities=17% Similarity=0.101 Sum_probs=91.8
Q ss_pred ccccceecccCCceEEEEEeCCC-CEEEEEEecCCchh-hHHHHHHhhc--ccc-ccC----C---------C--CCCcc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLSSG-RVVALKKLHRSETE-ELAFLETSST--DFR-HYN----S---------H--TDNDD 544 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~~g-~~vavK~l~~~~~~-~~~f~~e~~~--~l~-H~n----~---------~--~~~~~ 544 (599)
...++.|.+|||+.||.+....+ ..+|+|++-..+.+ -....+||.+ .++ |+| + . .-+.+
T Consensus 39 v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~Evl 118 (738)
T KOG1989|consen 39 VTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVL 118 (738)
T ss_pred EEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEE
Confidence 34467799999999999997655 99999998665444 4567889998 776 999 1 1 24568
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+.||||++| -+|+..+... .|+..+.++|+.|+++|+++|| .+.+||||||||
T Consensus 119 lLmEyC~gg~Lvd~mn~Rlq~-~lte~eVLkIf~dv~~AVa~mH-~~~pPiIHRDLK 173 (738)
T KOG1989|consen 119 LLMEYCKGGSLVDFMNTRLQT-RLTEDEVLKIFYDVCEAVAAMH-YLKPPIIHRDLK 173 (738)
T ss_pred eehhhccCCcHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHh-cCCCccchhhhh
Confidence 899999976 7777754322 3999999999999999999999 789999999997
|
|
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=134.96 Aligned_cols=112 Identities=24% Similarity=0.336 Sum_probs=93.3
Q ss_pred hhccccceecccCCceEEEEEeC----CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS----SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
++|...+.||+|+||.||+|.+. +...||||.+...... ..+|.+|+.+ +++||| ...+..++|
T Consensus 4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv 83 (266)
T cd05033 4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII 83 (266)
T ss_pred HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence 46777888999999999999974 2457999998754322 4578889888 999999 456778999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++.... ..++|.+...++.|++.|++||| ..+|+||||+
T Consensus 84 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~di~ 133 (266)
T cd05033 84 TEYMENGSLDKFLREND--GKFTVGQLVGMLRGIASGMKYLS---EMNYVHRDLA 133 (266)
T ss_pred EEcCCCCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 9999999 88887533 25899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.5e-14 Score=135.07 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=93.3
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
+|...+.||+|+||.||+|...++..+|+|.+........+|.+|+.+ .++||| ...+..++||||+++|
T Consensus 5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~ 84 (256)
T cd05059 5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANG 84 (256)
T ss_pred HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCC
Confidence 455567799999999999998777789999987654445678889888 899999 4566789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++..+. ..++|.....++.||+.|++||| ..+|+||||+
T Consensus 85 ~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~ 127 (256)
T cd05059 85 CLLNYLRERK--GKLGTEWLLDMCSDVCEAMEYLE---SNGFIHRDLA 127 (256)
T ss_pred CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCccccccc
Confidence 88887533 25899999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.4e-14 Score=134.72 Aligned_cols=113 Identities=20% Similarity=0.311 Sum_probs=95.5
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeecccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G 553 (599)
++|...+.||+|+||.||+|...+++.||+|.+.........|.+|+.+ +++||| ...+..++||||+++|
T Consensus 6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~ 85 (260)
T cd05067 6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMENG 85 (260)
T ss_pred HHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCCCC
Confidence 3455667899999999999998889999999997655555678899988 999999 4456789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... ...++|.+.+.++.|++.|++||| ..+++||||+
T Consensus 86 ~L~~~~~~~~-~~~~~~~~~~~i~~~i~~al~~LH---~~~i~H~dl~ 129 (260)
T cd05067 86 SLVDFLKTPE-GIKLTINKLIDMAAQIAEGMAFIE---RKNYIHRDLR 129 (260)
T ss_pred CHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHh---cCCeeccccc
Confidence 77776432 345899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-14 Score=140.28 Aligned_cols=104 Identities=19% Similarity=0.160 Sum_probs=86.1
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc-
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
.||+|+||.||++.. .+|+.||+|.+.... .....+.+|+.+ .++||| ...+..++||||+++|
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~ 81 (323)
T cd05595 2 LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGE 81 (323)
T ss_pred eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCCc
Confidence 589999999999985 468999999997532 123456778877 999999 4556789999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 82 L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlk 122 (323)
T cd05595 82 LFFHLSRE---RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIK 122 (323)
T ss_pred HHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCC
Confidence 6667632 35899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-14 Score=140.25 Aligned_cols=104 Identities=19% Similarity=0.131 Sum_probs=86.8
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc-
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
.||+|+||.||++.. .+|+.||||.+.... .+...+.+|+.+ +++||| ...+..++||||+++|
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~ 81 (323)
T cd05571 2 LLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGGE 81 (323)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCCc
Confidence 589999999999985 578999999987532 123457778887 999999 4567789999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.. ...+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 L~~~l~~---~~~~~~~~~~~~~~qi~~~L~~lH---~~~ivHrDlk 122 (323)
T cd05571 82 LFFHLSR---ERVFSEDRARFYGAEIVSALGYLH---SCDVVYRDLK 122 (323)
T ss_pred HHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCC
Confidence 777764 235899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=136.23 Aligned_cols=111 Identities=27% Similarity=0.332 Sum_probs=91.1
Q ss_pred hccccceecccCCceEEEEEeC-----CCCEEEEEEecCCchh-hHHHHHHhhc--cccccC----------CCCCCcce
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-----SGRVVALKKLHRSETE-ELAFLETSST--DFRHYN----------SHTDNDDS 545 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-----~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n----------~~~~~~~l 545 (599)
+|.....||+|+||.||++.+. ++..||+|++...... ...|.+|+.+ .++||| ......++
T Consensus 5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 84 (284)
T cd05081 5 HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRL 84 (284)
T ss_pred cceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEE
Confidence 4555677999999999999752 5789999998765433 5678889988 999999 22345789
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+||+++| .+++...+ ..++|.++..++.|+++||+||| ..+|+||||+
T Consensus 85 v~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~~l~~aL~~LH---~~~i~H~dlk 135 (284)
T cd05081 85 VMEYLPYGSLRDYLQKHR--ERLDHRKLLLYASQICKGMEYLG---SKRYVHRDLA 135 (284)
T ss_pred EEEecCCCCHHHHHHhcC--cCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCC
Confidence 99999999 88887432 34899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-14 Score=136.45 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=97.7
Q ss_pred HHHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 477 EMIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 477 ~l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
|++.++.++.....||+|+||.||+|.. +++..||+|.+..... ....+.+|+.+ .++||| ..++..+
T Consensus 2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~ 81 (268)
T cd06624 2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFK 81 (268)
T ss_pred CcccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEE
Confidence 3456777887788999999999999985 4678899999876543 35678889888 999999 4567789
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|+||+++| .++++.+......++.+...++.||++||+||| ..+|+||||+
T Consensus 82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~h~dl~ 135 (268)
T cd06624 82 IFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLH---DNQIVHRDIK 135 (268)
T ss_pred EEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH---HCCEeecCCC
Confidence 999999999 888875322212278889999999999999999 7899999986
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-14 Score=136.09 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=81.5
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC----------CCC-C--Ccceeec
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN----------SHT-D--NDDSSDE 548 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n----------~~~-~--~~~lv~e 548 (599)
+...+++|.|+||.||+|.+. +++.||||+.-+.... --+|..+ .++||| ..+ + .+.+|||
T Consensus 26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~---knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVle 102 (364)
T KOG0658|consen 26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY---KNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLE 102 (364)
T ss_pred EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc---CcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHH
Confidence 445678999999999999964 5789999998654332 1134544 899999 222 2 4568999
Q ss_pred ccccc-cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN-EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G-~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||.- .++++.. ..+..++.....-+..|+.+||+||| ..+|+|||||
T Consensus 103 ymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh---~~~IcHRDIK 152 (364)
T KOG0658|consen 103 YMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLH---SHGICHRDIK 152 (364)
T ss_pred hchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHH---hcCcccCCCC
Confidence 99999 6666631 12334666667778899999999999 7999999997
|
|
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-14 Score=142.50 Aligned_cols=113 Identities=16% Similarity=0.097 Sum_probs=92.7
Q ss_pred HHhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
...++|...+.||+|+||.||++... +++.+|+|.+.... .....+.+|+.+ .++||| ..++..+
T Consensus 40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~ 119 (370)
T cd05621 40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLY 119 (370)
T ss_pred CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEE
Confidence 34567777888999999999999964 58899999986422 123457778887 899999 4667789
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++... .+++.+...++.||+.||+||| ..+|+||||+
T Consensus 120 lv~Ey~~gg~L~~~l~~~----~~~~~~~~~~~~qil~aL~~LH---~~~IvHrDLK 169 (370)
T cd05621 120 MVMEYMPGGDLVNLMSNY----DVPEKWAKFYTAEVVLALDAIH---SMGLIHRDVK 169 (370)
T ss_pred EEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCC
Confidence 999999999 7777642 3788889999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=7e-14 Score=143.46 Aligned_cols=110 Identities=12% Similarity=0.024 Sum_probs=90.6
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
.|.....||+|+||.||+|.. .+++.||||++.... .....+.+|+.+ .++||| ...+..++|||
T Consensus 2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E 81 (381)
T cd05626 2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD 81 (381)
T ss_pred CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence 355667899999999999985 568999999996532 123467888887 999999 46677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ..+++.....++.||+.||+||| ..+|+|||||
T Consensus 82 ~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDlK 128 (381)
T cd05626 82 YIPGGDMMSLLIRM---EVFPEVLARFYIAELTLAIESVH---KMGFIHRDIK 128 (381)
T ss_pred cCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCc
Confidence 99999 7777642 34788888889999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.2e-14 Score=139.84 Aligned_cols=104 Identities=21% Similarity=0.160 Sum_probs=86.5
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc-
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
.||+|+||.||++.- .+|+.||||.+.... .....+.+|+.+ .++||| ...+..++||||+++|
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~ 81 (328)
T cd05593 2 LLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGE 81 (328)
T ss_pred eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCCC
Confidence 589999999999985 468999999997532 123567788877 999999 4567789999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.. ...+++.+...++.||+.||+||| ..+|+||||+
T Consensus 82 L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDik 122 (328)
T cd05593 82 LFFHLSR---ERVFSEDRTRFYGAEIVSALDYLH---SGKIVYRDLK 122 (328)
T ss_pred HHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccC
Confidence 666663 235899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.5e-14 Score=138.30 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=92.0
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
++|...+.||+|+||.||+|... +|+.||||.+...... ...+.+|+.+ .++||| ...+..++||||
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 84 (303)
T cd07869 5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEY 84 (303)
T ss_pred ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEEC
Confidence 45666778999999999999964 6899999998754322 3457788887 999999 456778999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++ .+++.... ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 85 ~~~~l~~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlk 130 (303)
T cd07869 85 VHTDLCQYMDKHP--GGLHPENVKLFLFQLLRGLSYIH---QRYILHRDLK 130 (303)
T ss_pred CCcCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 9887 77776432 34888999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.8e-14 Score=136.73 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=90.9
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|...+.||+|+||.||+|... +++.||+|.++.... ....+.+|+.+ .++||| ...+..++||||+
T Consensus 6 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 85 (288)
T cd07871 6 TYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYL 85 (288)
T ss_pred cceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCC
Confidence 4666778999999999999854 689999999865432 23467788888 999999 4566789999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++. .+++.... ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 86 ~~~l~~~l~~~~--~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlk 130 (288)
T cd07871 86 DSDLKQYLDNCG--NLMSMHNVKIFMFQLLRGLSYCH---KRKILHRDLK 130 (288)
T ss_pred CcCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 977 77776432 34788999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-14 Score=138.62 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=86.0
Q ss_pred ecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--
Q 007553 491 IGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN-- 553 (599)
Q Consensus 491 lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G-- 553 (599)
||+|+||.||+|... +++.||+|.+.... .....+.+|+.+ .++||| ...+..++||||+++|
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L 80 (312)
T cd05585 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL 80 (312)
T ss_pred CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence 699999999999964 58899999986532 223567788887 999999 4567789999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 81 ~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~HrDlk 120 (312)
T cd05585 81 FHHLQRE---GRFDLSRARFYTAELLCALENLH---KFNVIYRDLK 120 (312)
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCC
Confidence 7788642 34899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-13 Score=134.21 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=84.5
Q ss_pred eecccCCceEEEEEeCC-------------CCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 490 CIGTGGYGSVYRAQLSS-------------GRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~-------------g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
.||+|+||.||+|.+.+ ...||+|.+...... ...|.+|+.+ .++||| ......++
T Consensus 2 ~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~l 81 (262)
T cd05077 2 HLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENIM 81 (262)
T ss_pred ccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCEE
Confidence 48999999999998632 235889988664433 3567788777 899999 35567899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| ..+++.+. ..+++..+.++|.|||+||+||| +.+|+||||+
T Consensus 82 v~e~~~~~~l~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlk 132 (262)
T cd05077 82 VEEFVEFGPLDLFMHRKS--DVLTTPWKFKVAKQLASALSYLE---DKDLVHGNVC 132 (262)
T ss_pred EEecccCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHhh---hCCeECCCCC
Confidence 99999999 66666432 34899999999999999999999 8899999996
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-13 Score=135.97 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=85.5
Q ss_pred ecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceeecccccc--
Q 007553 491 IGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN-- 553 (599)
Q Consensus 491 lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G-- 553 (599)
||+|+||+||++.. .+|+.||||.+...... ...+..|+.+ .++||| ...+..++|||||++|
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L 80 (280)
T cd05608 1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL 80 (280)
T ss_pred CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence 69999999999985 46899999998653221 2456778877 899999 4566789999999999
Q ss_pred cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++... .....+++.+...++.||++||+||| +.+|+||||+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk 124 (280)
T cd05608 81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLH---QRRIIYRDLK 124 (280)
T ss_pred HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 6666432 22345899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-14 Score=143.36 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=91.5
Q ss_pred HhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
..++|...+.||+|+||.||++.. .+|+.||+|.+.... .....+.+|+.+ .++||| ..++..++
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l 120 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM 120 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence 456788788899999999999985 468999999996432 123446778887 899999 45677899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .+++... .++......++.||++||+||| ..+|+||||+
T Consensus 121 v~Ey~~gg~L~~~l~~~----~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLk 169 (370)
T cd05596 121 VMEYMPGGDLVNLMSNY----DIPEKWARFYTAEVVLALDAIH---SMGFIHRDVK 169 (370)
T ss_pred EEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 99999999 7777642 3677778889999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-14 Score=139.94 Aligned_cols=111 Identities=17% Similarity=0.110 Sum_probs=91.6
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|.....||+|+||.||++.. .+|+.||+|++..... ....+.+|+.+ .++||| ...+..++|||
T Consensus 2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e 81 (330)
T cd05601 2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVME 81 (330)
T ss_pred CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEEC
Confidence 466677899999999999985 4689999999975432 23457778877 889999 35667899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.... ..+++.....++.||++||.||| ..+|+||||+
T Consensus 82 ~~~~~~L~~~l~~~~--~~l~~~~~~~~~~qi~~aL~~lH---~~~i~H~Dlk 129 (330)
T cd05601 82 YQPGGDLLSLLNRYE--DQFDEDMAQFYLAELVLAIHSVH---QMGYVHRDIK 129 (330)
T ss_pred CCCCCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeEcccCc
Confidence 99999 88887532 35899999999999999999999 8899999996
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=133.17 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=93.8
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeecccccc-
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G- 553 (599)
+|...+.||+|+||.||+|...++..||+|.+.........|.+|+.+ +++||+ ...+..++||||+++|
T Consensus 7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~~ 86 (260)
T cd05070 7 SLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYMSKGS 86 (260)
T ss_pred HhhhhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEecCCCc
Confidence 345566799999999999998888889999997654445678899988 999999 4556689999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++++... ...++|.++..++.|++.|++||| ..+|+||||+
T Consensus 87 L~~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~ 129 (260)
T cd05070 87 LLDFLKDGE-GRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLR 129 (260)
T ss_pred HHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCc
Confidence 88887432 235899999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=133.33 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=93.6
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeecccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G 553 (599)
++|.....||+|+||.||+|...+...||+|.+.........|.+|+.+ .++||| ...+..++||||+++|
T Consensus 6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~ 85 (262)
T cd05071 6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKG 85 (262)
T ss_pred HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcCCCC
Confidence 3456667799999999999997666789999997644444678889888 899999 4456678999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++++... ...++|.++..++.|+++||+||| ..+|+||||+
T Consensus 86 ~L~~~~~~~~-~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~ 129 (262)
T cd05071 86 SLLDFLKGEM-GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLR 129 (262)
T ss_pred cHHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccC
Confidence 88887532 235799999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=142.07 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=90.2
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|+||.||++.. .+|+.||||.+..... ....+.+|+.+ .++||| ...+..++|||
T Consensus 2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E 81 (377)
T cd05629 2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIME 81 (377)
T ss_pred CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEe
Confidence 456667899999999999985 5789999999865321 13457778887 999999 46677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ..+++.....++.|++.||+||| ..+|+||||+
T Consensus 82 ~~~gg~L~~~l~~~---~~~~~~~~~~~~~ql~~aL~~LH---~~givHrDlk 128 (377)
T cd05629 82 FLPGGDLMTMLIKY---DTFSEDVTRFYMAECVLAIEAVH---KLGFIHRDIK 128 (377)
T ss_pred CCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence 99999 7777642 34788888899999999999999 8899999996
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=139.22 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=90.4
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|+||.||++.. .+++.||||.+.... .....|.+|+.+ .++||| ...+..++|||
T Consensus 2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e 81 (331)
T cd05597 2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMD 81 (331)
T ss_pred CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEe
Confidence 455667899999999999996 468999999986422 123457778777 889999 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.... ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 82 ~~~g~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk 129 (331)
T cd05597 82 YYVGGDLLTLLSKFE--DRLPEDMARFYLAEMVLAIDSVH---QLGYVHRDIK 129 (331)
T ss_pred cCCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeEECCCC
Confidence 99999 78886422 34788899999999999999999 8899999996
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-13 Score=132.94 Aligned_cols=113 Identities=21% Similarity=0.271 Sum_probs=94.8
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
.+|...+.||+|+||.||+|... .++.||+|.+........++.+|+++ .++||| ...+..++||||++
T Consensus 6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 85 (263)
T cd05052 6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT 85 (263)
T ss_pred HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCC
Confidence 34666788999999999999964 58899999987655445678899888 999999 45677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.... ...++|.+++.++.|+++||+||| ..+++||||+
T Consensus 86 ~~~L~~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlk 131 (263)
T cd05052 86 YGNLLDYLRECN-RQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLA 131 (263)
T ss_pred CCcHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccC
Confidence 99 88886432 345899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=141.47 Aligned_cols=116 Identities=20% Similarity=0.265 Sum_probs=91.2
Q ss_pred HhhhccccceecccCCceEEEEEe------CCCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCC
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTD 541 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~ 541 (599)
.-++|...+.||+|+||.||+|.. .++..||||++..... ....+.+|+.+ .+ +||| ...+
T Consensus 36 ~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~ 115 (374)
T cd05106 36 PRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGG 115 (374)
T ss_pred cHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCC
Confidence 345677778899999999999873 2345899999975432 23568889888 67 8999 4567
Q ss_pred Ccceeecccccc--cccccCCC----------------------------------------------------------
Q 007553 542 NDDSSDEHLANN--EHFLSAPE---------------------------------------------------------- 561 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~---------------------------------------------------------- 561 (599)
..++||||+++| .++++.+.
T Consensus 116 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (374)
T cd05106 116 PVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSS 195 (374)
T ss_pred CeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccc
Confidence 889999999999 76664311
Q ss_pred ---------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 562 ---------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 562 ---------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+++|.+..+|+.||++||+||| ..+|+||||+
T Consensus 196 ~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~giiHrDLk 239 (374)
T cd05106 196 DSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLA---SKNCIHRDVA 239 (374)
T ss_pred cccchhccCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCEEeccCc
Confidence 1135788999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=141.80 Aligned_cols=110 Identities=11% Similarity=0.043 Sum_probs=90.4
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|.....||+|+||.||++.. .+|+.||||.+..... ....+.+|+.+ +++||| ...+..++|||
T Consensus 2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E 81 (376)
T cd05598 2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD 81 (376)
T ss_pred CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence 456667899999999999985 4689999999865321 23457788887 999999 45678899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ..++......++.||++||+||| ..+|+||||+
T Consensus 82 ~~~~g~L~~~i~~~---~~~~~~~~~~~~~qi~~al~~lH---~~~ivHrDlk 128 (376)
T cd05598 82 YIPGGDMMSLLIRL---GIFEEDLARFYIAELTCAIESVH---KMGFIHRDIK 128 (376)
T ss_pred CCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCC
Confidence 99999 7888742 24778888889999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-13 Score=138.83 Aligned_cols=103 Identities=22% Similarity=0.213 Sum_probs=84.1
Q ss_pred ccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 487 IKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
..+.||+|+||.||+|.. .+|+.||||.+...... ...+.+|+++ .++||| ...+..++||||+++|
T Consensus 78 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~ 157 (353)
T PLN00034 78 RVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGG 157 (353)
T ss_pred hhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCC
Confidence 345699999999999985 46899999998654322 4568889988 999999 4567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+.. ..++.....++.||++||+||| ..+|+||||+
T Consensus 158 ~L~~~~-------~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlk 195 (353)
T PLN00034 158 SLEGTH-------IADEQFLADVARQILSGIAYLH---RRHIVHRDIK 195 (353)
T ss_pred cccccc-------cCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCC
Confidence 3322 2456778899999999999999 7899999996
|
|
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=139.36 Aligned_cols=111 Identities=22% Similarity=0.187 Sum_probs=90.4
Q ss_pred hhccccceecccCCceEEEEEeCC--CCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSS--GRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~--g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
++|.....||+|+||.||+|.... +..||+|++.... .....+.+|+.+ .++||| ..++..++|
T Consensus 30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 109 (340)
T PTZ00426 30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLV 109 (340)
T ss_pred hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEE
Confidence 356667789999999999998532 3689999986432 123467788888 999999 456778999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++... ..+++.....++.|++.||+||| ..+|+||||+
T Consensus 110 ~Ey~~~g~L~~~i~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLk 158 (340)
T PTZ00426 110 LEFVIGGEFFTFLRRN---KRFPNDVGCFYAAQIVLIFEYLQ---SLNIVYRDLK 158 (340)
T ss_pred EeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCC
Confidence 9999999 7788742 34889999999999999999999 8899999996
|
|
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.5e-14 Score=139.39 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=93.6
Q ss_pred hccccceecccCCceEEEEEeCC---C--CEEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCcceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSS---G--RVVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~---g--~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~ 547 (599)
.....++||.|.||.||+|.+.+ | ..||||.-+.... ..+.|+.|..+ .++||| ....+.|+||
T Consensus 390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P~Wivm 469 (974)
T KOG4257|consen 390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIVM 469 (974)
T ss_pred hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccceeEEE
Confidence 34456789999999999999732 3 3588898876432 35679999988 999999 7889999999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
|.++.| ++||+..+. .|+......+|.||+.||+||| +.+++||||
T Consensus 470 EL~~~GELr~yLq~nk~--sL~l~tL~ly~~Qi~talaYLe---SkrfVHRDI 517 (974)
T KOG4257|consen 470 ELAPLGELREYLQQNKD--SLPLRTLTLYCYQICTALAYLE---SKRFVHRDI 517 (974)
T ss_pred ecccchhHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHH---hhchhhhhh
Confidence 999999 999997543 4889999999999999999999 999999997
|
|
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=137.73 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=87.2
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC---------CCCCCcceeec
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN---------SHTDNDDSSDE 548 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n---------~~~~~~~lv~e 548 (599)
|...+.||+|+||.||+|... +++.||||.+.... .....+..|+.+ .++|++ ...+..++|||
T Consensus 2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E 81 (324)
T cd05587 2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVME 81 (324)
T ss_pred ceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEc
Confidence 555678999999999999864 57899999986532 123456777776 677765 35677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~~~~g~L~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlk 128 (324)
T cd05587 82 YVNGGDLMYHIQQV---GKFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLK 128 (324)
T ss_pred CCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCC
Confidence 99999 7777632 34789999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-13 Score=139.27 Aligned_cols=110 Identities=20% Similarity=0.197 Sum_probs=91.3
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|.....||+|+||.||+|... +|+.||||++..... ....+.+|+.+ .++||| ..++..++|||
T Consensus 2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e 81 (333)
T cd05600 2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAME 81 (333)
T ss_pred CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEe
Confidence 4566678999999999999964 589999999865421 23567788887 889999 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 82 ~~~g~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk 128 (333)
T cd05600 82 YVPGGDFRTLLNNL---GVLSEDHARFYMAEMFEAVDALH---ELGYIHRDLK 128 (333)
T ss_pred CCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 99999 8888642 34889999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-13 Score=131.13 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=90.6
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
.++|..-+.||+|+||+||.++- +.++.+|+|.++.... +.+...+|..+ +++||. -+++.+|+|
T Consensus 24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV 103 (357)
T KOG0598|consen 24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV 103 (357)
T ss_pred hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence 45788889999999999999985 5689999999976532 23445667666 999998 578899999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||++|| .-.|++. ..++.....=.+.+|+.||.||| +.+|||||||
T Consensus 104 ld~~~GGeLf~hL~~e---g~F~E~~arfYlaEi~lAL~~LH---~~gIiyRDlK 152 (357)
T KOG0598|consen 104 LDYLNGGELFYHLQRE---GRFSEDRARFYLAEIVLALGYLH---SKGIIYRDLK 152 (357)
T ss_pred EeccCCccHHHHHHhc---CCcchhHHHHHHHHHHHHHHHHH---hCCeeeccCC
Confidence 9999999 5556632 23677766667779999999999 9999999997
|
|
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=138.69 Aligned_cols=114 Identities=22% Similarity=0.272 Sum_probs=89.3
Q ss_pred hhccccceecccCCceEEEEEe------CCCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC---------CCCCC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSET--EELAFLETSST--DF-RHYN---------SHTDN 542 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n---------~~~~~ 542 (599)
++|...+.||+|+||.||+|.. .+++.||||+++.... ....+.+|+.+ ++ +||| ..+..
T Consensus 7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~ 86 (343)
T cd05103 7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP 86 (343)
T ss_pred hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCc
Confidence 4566677899999999999973 3578999999976432 24567888888 77 7898 23456
Q ss_pred cceeecccccc--cccccCCCC----------------------------------------------------------
Q 007553 543 DDSSDEHLANN--EHFLSAPEN---------------------------------------------------------- 562 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~---------------------------------------------------------- 562 (599)
.++||||+++| .++++.+..
T Consensus 87 ~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (343)
T cd05103 87 LMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEA 166 (343)
T ss_pred eEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhh
Confidence 78999999999 777753210
Q ss_pred ------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 563 ------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 563 ------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...++|.+...++.||++||+||| +.+|+||||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dik 206 (343)
T cd05103 167 EQEDLYKKVLTLEDLICYSFQVAKGMEFLA---SRKCIHRDLA 206 (343)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCc
Confidence 124788999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-13 Score=138.33 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=91.8
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
.+|...+.||+|+||.||+|... +|+.||||.+..... ....+.+|+.+ +++||| ...+..++||
T Consensus 18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 97 (329)
T PTZ00263 18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL 97 (329)
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence 35666788999999999999964 689999999865321 23467888887 999999 4667889999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.....++.||+.||+||| ..+|+||||+
T Consensus 98 e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlk 145 (329)
T PTZ00263 98 EFVVGGELFTHLRKA---GRFPNDVAKFYHAELVLAFEYLH---SKDIIYRDLK 145 (329)
T ss_pred cCCCCChHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence 999999 7777742 24788888999999999999999 7899999996
|
|
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=140.67 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=90.5
Q ss_pred hhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCch--hhHHHHHHhhc--ccc-ccC--------CCCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSET--EELAFLETSST--DFR-HYN--------SHTDN 542 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~-H~n--------~~~~~ 542 (599)
.+.|...+.||+|+||.||+|+.. .+..||||++..... ....|.+|+.+ .+. ||| ...+.
T Consensus 36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~ 115 (400)
T cd05105 36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGP 115 (400)
T ss_pred ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCc
Confidence 345666678999999999999852 134699999975432 24578899998 785 999 46678
Q ss_pred cceeecccccc--cccccCCC-----------------------------------------------------------
Q 007553 543 DDSSDEHLANN--EHFLSAPE----------------------------------------------------------- 561 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~----------------------------------------------------------- 561 (599)
.++||||+++| .++++...
T Consensus 116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (400)
T cd05105 116 IYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIK 195 (400)
T ss_pred eEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhh
Confidence 99999999999 77765311
Q ss_pred ----------------------------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 562 ----------------------------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 562 ----------------------------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
....++|.++..++.|||+||+||| ..+|+||||+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dik 264 (400)
T cd05105 196 EASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLA---SKNCVHRDLA 264 (400)
T ss_pred hhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence 0134788999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-13 Score=134.02 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=97.5
Q ss_pred HHhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
++..+|...+.||.|+||.||+|...++..+|+|.+..... ....+..|+.+ .++||| ...+..++|||
T Consensus 3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e 82 (261)
T cd05148 3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITE 82 (261)
T ss_pred CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEe
Confidence 34556777788999999999999987799999999976544 34568888887 999999 46677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .++++... ...++|.+...++.||++|++||| ..+|+||||+
T Consensus 83 ~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~al~~lH---~~~i~h~dl~ 131 (261)
T cd05148 83 LMEKGSLLAFLRSPE-GQVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLA 131 (261)
T ss_pred ecccCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccC
Confidence 99999 88887533 345899999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=137.49 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=86.0
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccc-cC--------CCCCCcceeec
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRH-YN--------SHTDNDDSSDE 548 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H-~n--------~~~~~~~lv~e 548 (599)
|...+.||+|+||.||+|.. .+|+.||+|.+..... ....+..|+.+ .+.| |+ ...+..++|||
T Consensus 2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E 81 (323)
T cd05615 2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVME 81 (323)
T ss_pred ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEc
Confidence 55567899999999999985 4689999999865321 13456667666 5555 44 35567899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ..+++.+...+|.||+.||+||| ..+|+||||+
T Consensus 82 y~~~g~L~~~i~~~---~~l~~~~~~~i~~qi~~al~~lH---~~~ivHrDik 128 (323)
T cd05615 82 YVNGGDLMYHIQQV---GKFKEPQAVFYAAEISVGLFFLH---RRGIIYRDLK 128 (323)
T ss_pred CCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 99999 7777632 34899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-13 Score=134.72 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=89.7
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
|...+.||+|+||.||++.. .+++.||||.+...... ...+.+|+.+ .++||| ..++..++||||
T Consensus 2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (285)
T cd05605 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL 81 (285)
T ss_pred ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEec
Confidence 44557799999999999985 46899999999654321 2457788887 899999 355778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++... ....+++.+...++.|+++||.||| ..+|+||||+
T Consensus 82 ~~~~~L~~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk 129 (285)
T cd05605 82 MNGGDLKFHIYNM-GNPGFDEERAVFYAAEITCGLEDLH---RERIVYRDLK 129 (285)
T ss_pred cCCCcHHHHHHhc-CcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCC
Confidence 9999 6666532 2345899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-13 Score=133.32 Aligned_cols=117 Identities=13% Similarity=0.103 Sum_probs=91.9
Q ss_pred cccHHHHHHHhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------
Q 007553 472 RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN-------- 537 (599)
Q Consensus 472 ~~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n-------- 537 (599)
.++.+++. ......+|+|++|.||+|.+ +|+.||||+++..... ...|.+|+.+ +++|||
T Consensus 14 ~i~~~~i~-----~~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~ 87 (283)
T PHA02988 14 CIESDDID-----KYTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFI 87 (283)
T ss_pred ecCHHHcC-----CCCCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeE
Confidence 34555552 33346799999999999998 6899999999764332 3567799988 999999
Q ss_pred CC----CCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 SH----TDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ~~----~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.. ....++||||+++| .+++... ..++|.+..++|.|+|+||+|||+. .+++||||+
T Consensus 88 ~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~---~~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlk 150 (283)
T PHA02988 88 IDIVDDLPRLSLILEYCTRGYLREVLDKE---KDLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLT 150 (283)
T ss_pred EecccCCCceEEEEEeCCCCcHHHHHhhC---CCCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCC
Confidence 12 24578999999999 8888743 3589999999999999999999931 367799986
|
|
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-13 Score=137.22 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=85.4
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc-
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
.||+|+||.||++.- .+|+.||+|.+.... .....+..|+.+ .++||| ...+..++||||+++|
T Consensus 2 ~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~ 81 (325)
T cd05594 2 LLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGE 81 (325)
T ss_pred eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCCc
Confidence 589999999999984 478999999987532 123456778777 899999 4567789999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++.+...++.||+.||+|||+ ..+|+||||+
T Consensus 82 L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~lH~--~~~ivHrDik 123 (325)
T cd05594 82 LFFHLSRE---RVFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLK 123 (325)
T ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCC
Confidence 6666632 358999999999999999999993 2699999996
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-13 Score=138.04 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=90.9
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCC----ch-h-hHHHHHHhhc--ccc-ccC--------CCCCCc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRS----ET-E-ELAFLETSST--DFR-HYN--------SHTDND 543 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~----~~-~-~~~f~~e~~~--~l~-H~n--------~~~~~~ 543 (599)
.+.+...+.||+|.||.|+.|.. .+|..||||.+... .. . .....+|+.+ .++ ||| ......
T Consensus 16 ~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~ 95 (370)
T KOG0583|consen 16 IGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKI 95 (370)
T ss_pred cCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeE
Confidence 34566677899999999999974 56899999977653 11 1 2344568877 888 999 455669
Q ss_pred ceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+.+| .+++..+ .++...+...++.|++.|++|+| ..+|+|||||
T Consensus 96 ~ivmEy~~gGdL~~~i~~~---g~l~E~~ar~~F~Qlisav~y~H---~~gi~HRDLK 147 (370)
T KOG0583|consen 96 YIVMEYCSGGDLFDYIVNK---GRLKEDEARKYFRQLISAVAYCH---SRGIVHRDLK 147 (370)
T ss_pred EEEEEecCCccHHHHHHHc---CCCChHHHHHHHHHHHHHHHHHH---hCCEeeCCCC
Confidence 9999999999 8888862 34788899999999999999999 8999999997
|
|
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=138.03 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=90.4
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|+||.||++... +++.||+|.+.... .+...+.+|+.+ .++||+ ...+..++|||
T Consensus 2 ~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~E 81 (331)
T cd05624 2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMD 81 (331)
T ss_pred CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEe
Confidence 4566678999999999999864 67899999986532 113447777777 889998 46777899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.... ..+++.....++.||+.||+||| ..+|+||||+
T Consensus 82 y~~gg~L~~~l~~~~--~~l~~~~~~~~~~qi~~~L~~lH---~~~iiHrDlk 129 (331)
T cd05624 82 YYVGGDLLTLLSKFE--DRLPEDMARFYIAEMVLAIHSIH---QLHYVHRDIK 129 (331)
T ss_pred CCCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCc
Confidence 99999 88887422 34888999999999999999999 8999999996
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-13 Score=139.77 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=91.7
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|+||.||+|... +|+.||||++.... .....+.+|+.+ .++||| ...+..++|||
T Consensus 2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e 81 (350)
T cd05573 2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVME 81 (350)
T ss_pred CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEc
Confidence 4556678999999999999964 68999999987532 224567788887 899999 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ..+++.....++.||+.||+||| ..+|+||||+
T Consensus 82 ~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~giiH~Dlk 128 (350)
T cd05573 82 YMPGGDLMNLLIRK---DVFPEETARFYIAELVLALDSVH---KLGFIHRDIK 128 (350)
T ss_pred CCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 99999 7787743 35889999999999999999999 7999999996
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-13 Score=132.17 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=86.5
Q ss_pred ecccCCceEEEEEeC---CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC-------CCCCCcceeecccccc--c
Q 007553 491 IGTGGYGSVYRAQLS---SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN--E 554 (599)
Q Consensus 491 lg~g~~g~v~~~~~~---~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G--~ 554 (599)
||+|+||.||+|.+. .+..||||.+...... ..+|.+|+.+ +++||| ...+..++||||+++| .
T Consensus 3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~~L~ 82 (257)
T cd05115 3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGGPLN 82 (257)
T ss_pred cCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCCCHH
Confidence 899999999999863 3557999998765322 4568889888 999999 4566789999999999 8
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 555 HFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 555 ~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++..+. ..+++.++++++.||++||+||| ..+++||||+
T Consensus 83 ~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk 122 (257)
T cd05115 83 KFLSGKK--DEITVSNVVELMHQVSMGMKYLE---GKNFVHRDLA 122 (257)
T ss_pred HHHHhCC--CCCCHHHHHHHHHHHHHHHHHHH---hcCeeecccc
Confidence 8887432 35899999999999999999999 7799999986
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-14 Score=137.54 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=92.5
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|..-..||+|+||.||||+- .+++.||+|.+.+.... -+...+|+++ +++||| .+...+|+|+||+
T Consensus 4 yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~a 83 (808)
T KOG0597|consen 4 YHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEYA 83 (808)
T ss_pred hhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehhh
Confidence 33345699999999999995 46899999999765433 3568889999 999999 4678899999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+. +.+|.+. ..+...+...||.|...||.||| +.+|+|||+|
T Consensus 84 ~g~L~~il~~d---~~lpEe~v~~~a~~LVsaL~yLh---s~rilhrd~k 127 (808)
T KOG0597|consen 84 VGDLFTILEQD---GKLPEEQVRAIAYDLVSALYYLH---SNRILHRDMK 127 (808)
T ss_pred hhhHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHH---hcCcccccCC
Confidence 998 9999853 34888999999999999999999 8999999985
|
|
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-13 Score=132.90 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=92.6
Q ss_pred hccccceecccCCceEEEEE-eCCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|.....||.|..++||+|. .+.++.||||++.....+ ..+..+|+.. -++||| ..+..+|+||.||
T Consensus 27 ~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfM 106 (516)
T KOG0582|consen 27 DYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFM 106 (516)
T ss_pred ceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhh
Confidence 45555679999999999998 467899999999765433 4667788887 899999 5789999999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+| .+.+...- ...++...+..|..++.+||.||| ..|.||||+|
T Consensus 107 a~GS~ldIik~~~-~~Gl~E~~Ia~iLre~LkaL~YLH---~~G~IHRdvK 153 (516)
T KOG0582|consen 107 AGGSLLDIIKTYY-PDGLEEASIATILREVLKALDYLH---QNGHIHRDVK 153 (516)
T ss_pred cCCcHHHHHHHHc-cccccHHHHHHHHHHHHHHHHHHH---hcCceecccc
Confidence 999 66665321 123888999999999999999999 8999999997
|
|
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-13 Score=134.48 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=90.1
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
+|...+.||+|+||.||+|+.. +++.||||++..... ....+.+|+.+ .++||| ...+..++||||
T Consensus 2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (287)
T cd07848 2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEY 81 (287)
T ss_pred CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEec
Confidence 3555678999999999999974 688999999875432 13567788888 999999 456678999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+.+... ...+++.+...++.||+.||+||| ..+|+||||+
T Consensus 82 ~~~~~l~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlk 127 (287)
T cd07848 82 VEKNMLELLEEM--PNGVPPEKVRSYIYQLIKAIHWCH---KNDIVHRDIK 127 (287)
T ss_pred CCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 9999 5555432 234889999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-13 Score=130.33 Aligned_cols=105 Identities=18% Similarity=0.299 Sum_probs=89.2
Q ss_pred eecccCCceEEEEEeCCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecccccc--cc
Q 007553 490 CIGTGGYGSVYRAQLSSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--EH 555 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~~ 555 (599)
.||+|+||.||+|...+++.||+|.+.....+ ...|.+|+.+ .++||| ...+..++||||+++| .+
T Consensus 2 ~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~ 81 (250)
T cd05085 2 LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLS 81 (250)
T ss_pred ccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHH
Confidence 58999999999999888999999998764332 3468889887 999999 4567789999999999 77
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 556 FLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 556 ~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++.... ..++|.+.+.++.||+.||.||| ..+++||||+
T Consensus 82 ~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~~~H~dl~ 120 (250)
T cd05085 82 FLRKKK--DELKTKQLVKFALDAAAGMAYLE---SKNCIHRDLA 120 (250)
T ss_pred HHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccC
Confidence 776432 34899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-13 Score=130.62 Aligned_cols=105 Identities=19% Similarity=0.316 Sum_probs=88.2
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--c
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--E 554 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~ 554 (599)
.||+|+||.||+|.. .+|+.||+|....... ....|.+|+++ .++||| ...+..++||||+++| .
T Consensus 2 ~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~ 81 (252)
T cd05084 2 RIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFL 81 (252)
T ss_pred ccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcHH
Confidence 489999999999986 4789999998764322 24568889887 999999 4667789999999999 8
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 555 HFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 555 ~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++.+. ..++|.+...++.|++.||+||| ..+|+||||+
T Consensus 82 ~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~ 121 (252)
T cd05084 82 TFLRTEG--PRLKVKELIQMVENAAAGMEYLE---SKHCIHRDLA 121 (252)
T ss_pred HHHHhCC--CCCCHHHHHHHHHHHHHHHHHHH---hCCccccccc
Confidence 7886432 35899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-13 Score=140.93 Aligned_cols=110 Identities=11% Similarity=0.020 Sum_probs=90.3
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
.|...+.||+|+||.||+|.. .+++.||+|.+..... ....+.+|+.+ .++||| ...+..++|||
T Consensus 2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E 81 (382)
T cd05625 2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD 81 (382)
T ss_pred CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence 356677899999999999985 4688999999865321 23467788887 999999 46677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||++| .+++... ..+++.....++.||+.||+||| ..+|+||||+
T Consensus 82 ~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~al~~lH---~~~ivHrDlK 128 (382)
T cd05625 82 YIPGGDMMSLLIRM---GIFPEDLARFYIAELTCAVESVH---KMGFIHRDIK 128 (382)
T ss_pred CCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 99999 7777642 24778888899999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-13 Score=137.76 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=87.5
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC---C----------CCCCcce
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN---S----------HTDNDDS 545 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n---~----------~~~~~~l 545 (599)
|.....||+|+||.||+|.- .+|+.||||++.... .....+.+|+.+ .++||| . .....++
T Consensus 2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~l 81 (338)
T cd07859 2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYV 81 (338)
T ss_pred eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEE
Confidence 44456799999999999984 468999999986432 224568889988 999999 0 1124799
Q ss_pred eecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||||+++ .+++.. ...++|.+...++.||++||+||| +.+|+||||+
T Consensus 82 v~e~~~~~L~~~l~~---~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlk 130 (338)
T cd07859 82 VFELMESDLHQVIKA---NDDLTPEHHQFFLYQLLRALKYIH---TANVFHRDLK 130 (338)
T ss_pred EEecCCCCHHHHHHh---cccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 99999877 777763 234899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-13 Score=136.43 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=83.7
Q ss_pred eecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc---cccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST---DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|... +++.||||.++... .....+..|..+ .++||| ...+..++||||+++|
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~g 81 (316)
T cd05619 2 MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNGG 81 (316)
T ss_pred eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCCC
Confidence 5899999999999964 57899999997542 123345555555 469999 4567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~LH---~~~ivHrdik 123 (316)
T cd05619 82 DLMFHIQSC---HKFDLPRATFYAAEIICGLQFLH---SKGIVYRDLK 123 (316)
T ss_pred cHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCC
Confidence 7777642 34899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-13 Score=139.36 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=90.6
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|+||.||++.. .+|+.||+|.+..... ....+..|+.+ .++||+ ...+..++|||
T Consensus 2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E 81 (360)
T cd05627 2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIME 81 (360)
T ss_pred CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEe
Confidence 466678899999999999986 4689999999965321 13456678777 899999 46677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++..+ ..+++.....++.||+.||+||| ..+|+||||+
T Consensus 82 ~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~~L~~lH---~~givHrDLk 128 (360)
T cd05627 82 FLPGGDMMTLLMKK---DTLSEEATQFYIAETVLAIDAIH---QLGFIHRDIK 128 (360)
T ss_pred CCCCccHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCC
Confidence 99999 7777642 34888999999999999999999 8999999996
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-13 Score=130.66 Aligned_cols=114 Identities=22% Similarity=0.319 Sum_probs=96.4
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
.++|...+.||+|+||.||+|...+++.||||.+........++.+|+.+ +++||| ......++||||++
T Consensus 5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~ 84 (261)
T cd05034 5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMS 84 (261)
T ss_pred hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccC
Confidence 34566678899999999999998778889999998655545678899888 999999 34577899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.... ...++|.+...++.|++.|++||| ..+++||||+
T Consensus 85 ~~~L~~~i~~~~-~~~~~~~~~~~~~~~i~~al~~lh---~~~i~h~di~ 130 (261)
T cd05034 85 KGSLLDFLKSGE-GKKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLA 130 (261)
T ss_pred CCCHHHHHhccc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcc
Confidence 99 88887532 235899999999999999999999 7799999985
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-13 Score=130.70 Aligned_cols=112 Identities=18% Similarity=0.260 Sum_probs=92.8
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeecccccc-
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G- 553 (599)
++.....||+|++|.||+|...++..||+|.+.........|.+|+.+ .++||| ...+..++||||+++|
T Consensus 7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~ 86 (260)
T cd05069 7 SLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMGKGS 86 (260)
T ss_pred HeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCCCCC
Confidence 355566799999999999998777789999987654445668889888 999999 4566789999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++++... ...++|..+..++.|++.|++||| ..+|+||||+
T Consensus 87 L~~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dl~ 129 (260)
T cd05069 87 LLDFLKEGD-GKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLR 129 (260)
T ss_pred HHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccC
Confidence 88887532 335899999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-13 Score=132.98 Aligned_cols=113 Identities=20% Similarity=0.235 Sum_probs=90.8
Q ss_pred hccccceecccCCceEEEEEe-----CCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-----SSGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-----~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
+|.....||+|+||.||+|.. .++..||+|.+..... ...+|.+|+++ .++||| ..++..++|
T Consensus 6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 85 (283)
T cd05090 6 AVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCML 85 (283)
T ss_pred hceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEE
Confidence 455567799999999999984 2467899999975332 23568889887 999999 466788999
Q ss_pred ecccccc--cccccCCC--------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPE--------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~--------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++..+. ....++|.+.+.++.|+++||+||| ..+|+||||+
T Consensus 86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlk 151 (283)
T cd05090 86 FEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLS---SHFFVHKDLA 151 (283)
T ss_pred EEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hcCeehhccc
Confidence 9999999 77775321 1235789999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.2e-14 Score=132.63 Aligned_cols=105 Identities=18% Similarity=0.181 Sum_probs=89.9
Q ss_pred ceecccCCceEEEEEe-CCCCEEEEEEecCCchh-h---HHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 489 YCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-E---LAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~---~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
..+|+|.||.|-++.- ..|+.||||.++..... + --..+||++ .++||| .+.+...+||||..+|
T Consensus 59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYaS~G 138 (668)
T KOG0611|consen 59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYASGG 138 (668)
T ss_pred HHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEecCCc
Confidence 3489999999999983 57999999999776433 1 235678998 999999 4677889999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|+..++ .|+..+...|+.||..|+.|+| +.+++|||||
T Consensus 139 eLYDYiSer~---~LsErEaRhfFRQIvSAVhYCH---knrVvHRDLK 180 (668)
T KOG0611|consen 139 ELYDYISERG---SLSEREARHFFRQIVSAVHYCH---KNRVVHRDLK 180 (668)
T ss_pred cHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHh---hccceecccc
Confidence 99999643 4899999999999999999999 8999999996
|
|
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-13 Score=138.20 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=90.5
Q ss_pred hhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh--hHHHHHHhhc--ccc-ccC--------CCCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE--ELAFLETSST--DFR-HYN--------SHTDN 542 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~-H~n--------~~~~~ 542 (599)
.+++.....||+|+||.||+|..+ .+..||||++...... ...+.+|+.+ .+. ||| ...+.
T Consensus 36 ~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~ 115 (401)
T cd05107 36 RDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGP 115 (401)
T ss_pred HHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCC
Confidence 344555677999999999999863 2358999999764322 3568889988 787 999 45577
Q ss_pred cceeecccccc--cccccCCC-----------------------------------------------------------
Q 007553 543 DDSSDEHLANN--EHFLSAPE----------------------------------------------------------- 561 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~----------------------------------------------------------- 561 (599)
.++|+||+++| .++++..+
T Consensus 116 ~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (401)
T cd05107 116 IYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDM 195 (401)
T ss_pred cEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcc
Confidence 89999999999 77775321
Q ss_pred ------------------------------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 562 ------------------------------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 562 ------------------------------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
....++|.+...++.||++||+||| .++|+||||+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrdlk 266 (401)
T cd05107 196 KGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLA---SKNCVHRDLA 266 (401)
T ss_pred hhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcCcccCC
Confidence 1124788889999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-13 Score=131.96 Aligned_cols=107 Identities=20% Similarity=0.166 Sum_probs=85.7
Q ss_pred eecccCCceEEEEEeCC---CCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecccccc-
Q 007553 490 CIGTGGYGSVYRAQLSS---GRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~---g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
.||+|+||.||+|...+ ...+|+|.+...... ...|.+|+.+ .++||| ...+..++||||+++|
T Consensus 2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~ 81 (269)
T cd05042 2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD 81 (269)
T ss_pred cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence 48999999999997533 357889987654322 4568889887 899999 4567789999999999
Q ss_pred -cccccCCCC--CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPEN--YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~--~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++..... ....++.....++.||++|++||| ..+|+||||+
T Consensus 82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk 127 (269)
T cd05042 82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLH---QADFIHSDLA 127 (269)
T ss_pred HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHH---hcCEeccccc
Confidence 888875332 223568888999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-13 Score=136.03 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=86.3
Q ss_pred ceecccCCceEEEEEe----CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 489 YCIGTGGYGSVYRAQL----SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~----~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
+.||+|+||.||++.. .+|+.||+|++..... +...+..|+++ +++||| ...+..++||||++
T Consensus 2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~ 81 (318)
T cd05582 2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR 81 (318)
T ss_pred ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence 3589999999998874 3689999999975432 23456678877 999999 45677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.. ...+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~~~L~~~l~~---~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk 125 (318)
T cd05582 82 GGDLFTRLSK---EVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLK 125 (318)
T ss_pred CCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCC
Confidence 99 777763 234899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-13 Score=132.13 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=90.2
Q ss_pred hhccccceecccCCceEEEEEe-CCCC----EEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGR----VVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~----~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv 546 (599)
.+|...+.||+|+||+||+|.+ .+|. .||+|.+..... ...++.+|+.+ .++||| ......+++
T Consensus 7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l~ 86 (279)
T cd05109 7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQLV 86 (279)
T ss_pred hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEEE
Confidence 4566678899999999999985 3454 489999865432 24567888877 899999 234567899
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||+++| .++++... ..+++.+.+.++.||+.||+||| +.+|+||||+
T Consensus 87 ~~~~~~g~l~~~l~~~~--~~~~~~~~~~~~~qi~~~L~~lH---~~~iiH~dlk 136 (279)
T cd05109 87 TQLMPYGCLLDYVRENK--DRIGSQDLLNWCVQIAKGMSYLE---EVRLVHRDLA 136 (279)
T ss_pred EEcCCCCCHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccc
Confidence 9999999 77777432 35899999999999999999999 8899999996
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-13 Score=139.64 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=95.4
Q ss_pred HHHHHHHhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CC
Q 007553 475 FEEMIQATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SH 539 (599)
Q Consensus 475 ~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~ 539 (599)
+.++....++|...+.||+|+||.||++... +++.+|+|.+.... .....+.+|+.+ .++||| ..
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~ 114 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 114 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence 3445556678888899999999999999964 68899999986422 123457778877 889999 46
Q ss_pred CCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 540 TDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 540 ~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++..++||||+++| .+++... .++......++.||+.||+||| ..+|+||||+
T Consensus 115 ~~~~~lv~Ey~~gg~L~~~~~~~----~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLk 169 (371)
T cd05622 115 DRYLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVK 169 (371)
T ss_pred CCEEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCC
Confidence 67789999999999 7777642 3778888899999999999999 8899999996
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-13 Score=131.23 Aligned_cols=112 Identities=23% Similarity=0.291 Sum_probs=91.7
Q ss_pred hhccccceecccCCceEEEEEeC-C---CCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-S---GRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~---g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
.+|...+.||+|+||.||+|... + +..+|+|.++.... ....|.+|+.+ .++||| ...+..++|
T Consensus 4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 83 (267)
T cd05066 4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV 83 (267)
T ss_pred HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence 45666788999999999999852 2 34799999875432 24578888887 899999 467788999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++.... ..++|.+.+.++.||+.|++||| ..+++||||+
T Consensus 84 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH---~~~i~h~dlk 133 (267)
T cd05066 84 TEYMENGSLDAFLRKHD--GQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLA 133 (267)
T ss_pred EEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCEeehhhc
Confidence 9999999 88887532 35899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-13 Score=133.29 Aligned_cols=116 Identities=17% Similarity=0.227 Sum_probs=92.8
Q ss_pred HHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC--------CC------CC
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DF-RHYN--------SH------TD 541 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n--------~~------~~ 541 (599)
.+++.|...+.||+|+||.||+|.. .+++.||+|++.........+..|+.+ ++ +||| .. .+
T Consensus 3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~ 82 (272)
T cd06637 3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDD 82 (272)
T ss_pred ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCc
Confidence 3566677777899999999999986 468899999997655445667788877 66 7999 11 23
Q ss_pred Ccceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++| .+++.... ...++|.....++.||+.||+||| ..+|+||||+
T Consensus 83 ~~~iv~e~~~~~~L~~~l~~~~-~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivh~dl~ 138 (272)
T cd06637 83 QLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIK 138 (272)
T ss_pred EEEEEEEcCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCC
Confidence 478999999999 77777532 345899999999999999999999 7799999985
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-13 Score=136.40 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=83.8
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc---cccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST---DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||+||+|.. .+|+.||||.+..... +...+..|... .++||| ...+..++||||+++|
T Consensus 2 ~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g 81 (323)
T cd05575 2 VIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNGG 81 (323)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCCC
Confidence 589999999999996 4689999999865321 12345555443 799999 3567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++++. ...+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~L~~~l~~---~~~~~~~~~~~~~~qi~~~l~~lH---~~givH~dik 123 (323)
T cd05575 82 ELFFHLQR---ERSFPEPRARFYAAEIASALGYLH---SLNIIYRDLK 123 (323)
T ss_pred CHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCC
Confidence 777764 235888999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-13 Score=131.35 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=86.3
Q ss_pred eecccCCceEEEEEeCC---CCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecccccc-
Q 007553 490 CIGTGGYGSVYRAQLSS---GRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~---g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
.||+|+||.||+|...+ +..+|+|.++..... ...|.+|+.+ .++||| ......++||||+++|
T Consensus 2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~ 81 (269)
T cd05087 2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD 81 (269)
T ss_pred cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence 48999999999998643 357899998765422 3568888887 999999 4556789999999999
Q ss_pred -cccccCCC--CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPE--NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++++... .....+|.....++.|||+||+||| ..+++||||+
T Consensus 82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dlk 127 (269)
T cd05087 82 LKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLH---KNNFIHSDLA 127 (269)
T ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCEeccccC
Confidence 88887532 2235678888999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-13 Score=136.05 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=84.8
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cc-cccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DF-RHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||++.. .+++.||||.++.... ....+..|+.+ .+ +||| ...+..++||||+++|
T Consensus 2 ~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~g 81 (329)
T cd05588 2 VIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSGG 81 (329)
T ss_pred eEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence 589999999999986 4689999999975321 12346677776 55 7999 3567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++..+..++.||+.||+||| ..+|+||||+
T Consensus 82 ~L~~~~~~~---~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk 123 (329)
T cd05588 82 DLMFHMQRQ---RKLPEEHARFYSAEISLALNFLH---ERGIIYRDLK 123 (329)
T ss_pred CHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCC
Confidence 6677532 34899999999999999999999 8899999986
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-13 Score=134.90 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=90.8
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|...+.||+|+||.||+|+.. +++.||+|.++..... ...+.+|+.+ +++||| ...+..++||||+
T Consensus 7 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 86 (309)
T cd07872 7 TYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYL 86 (309)
T ss_pred ceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCC
Confidence 4556678999999999999854 6889999998754322 3457788887 899999 4567789999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++ .+++.... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 87 ~~~l~~~~~~~~--~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~dlk 131 (309)
T cd07872 87 DKDLKQYMDDCG--NIMSMHNVKIFLYQILRGLAYCH---RRKVLHRDLK 131 (309)
T ss_pred CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 988 77776432 34789999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-13 Score=131.66 Aligned_cols=116 Identities=20% Similarity=0.291 Sum_probs=93.4
Q ss_pred HhhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCC
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDN 542 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~ 542 (599)
++++|...+.||+|+||.||+|... .+..||||++.... ....+|.+|+.+ .++||| ..+..
T Consensus 4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~ 83 (277)
T cd05062 4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP 83 (277)
T ss_pred cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence 4567888888999999999998752 24679999986432 234568889887 899999 46677
Q ss_pred cceeecccccc--cccccCCCC-------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPEN-------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~-------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+++| .++++..+. ...++|.+...++.|+|+|++||| ..+++||||+
T Consensus 84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~vH~dlk 146 (277)
T cd05062 84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN---ANKFVHRDLA 146 (277)
T ss_pred eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCcc
Confidence 89999999999 888864221 234688999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-13 Score=129.46 Aligned_cols=112 Identities=22% Similarity=0.315 Sum_probs=95.2
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
++|...+.+|+|+||.||+|... |+.||||.+........++.+|+.+ +++|+| ...+..++||||+++
T Consensus 6 ~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~ 84 (256)
T cd05039 6 KELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAK 84 (256)
T ss_pred hhccceeeeecCCCceEEEEEec-CcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCC
Confidence 45666788999999999999874 8899999997765555678889888 999999 457788999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++.... ...++|.+...++.|++.|++||| ..+|+||||+
T Consensus 85 ~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~ 129 (256)
T cd05039 85 GSLVDYLRSRG-RAVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLA 129 (256)
T ss_pred CcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCccchhcc
Confidence 9 88887532 235899999999999999999999 8899999986
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-13 Score=148.26 Aligned_cols=113 Identities=23% Similarity=0.227 Sum_probs=91.7
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|+||.||+|.. .+|+.||||++..... ....|.+|+++ +++||| ...+..++|||
T Consensus 3 rYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVME 82 (932)
T PRK13184 3 RYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMP 82 (932)
T ss_pred CeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEE
Confidence 466677899999999999985 4689999999865321 14568899988 999999 45677899999
Q ss_pred ccccc--cccccCCC--------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPE--------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~--------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.... .....+|.+.++++.||++||+||| ..+|+||||+
T Consensus 83 Y~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLH---s~GIIHRDLK 140 (932)
T PRK13184 83 YIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVH---SKGVLHRDLK 140 (932)
T ss_pred cCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHH---HCCccccCCc
Confidence 99999 77775311 1234678889999999999999999 7899999996
|
|
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-13 Score=132.82 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=89.9
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
|...+.||+|+||.||+|.. .+++.||+|.+...... ...+.+|+.+ .++|++ ..++..++||||
T Consensus 2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~ 81 (285)
T cd05632 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI 81 (285)
T ss_pred ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence 34456799999999999986 46899999998654321 2356778887 899999 466778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++... ....++|.....++.|+++||.||| ..+|+||||+
T Consensus 82 ~~~~~L~~~~~~~-~~~~~~~~~~~~~~~ql~~~l~~lH---~~~iiH~dik 129 (285)
T cd05632 82 MNGGDLKFHIYNM-GNPGFEEERALFYAAEILCGLEDLH---RENTVYRDLK 129 (285)
T ss_pred ccCccHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCC
Confidence 9999 6666542 2335899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-13 Score=135.51 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=83.8
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc---cccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST---DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|.. .+|+.||||.+.... .....+..|... .++||| ...+..++||||+++|
T Consensus 2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~~ 81 (325)
T cd05604 2 VIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGG 81 (325)
T ss_pred ceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCCC
Confidence 589999999999985 578999999986532 123345555543 799999 4567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++.. ...+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~L~~~l~~---~~~~~~~~~~~~~~qi~~al~~lH---~~givH~Dlk 123 (325)
T cd05604 82 ELFFHLQR---ERSFPEPRARFYAAEIASALGYLH---SINIVYRDLK 123 (325)
T ss_pred CHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence 666653 235889999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-13 Score=135.32 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=83.8
Q ss_pred eecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc---cccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST---DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|... +|+.||||.+.... .....+..|+++ ..+||+ ...+..++||||+++|
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~ 81 (321)
T cd05591 2 VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNGG 81 (321)
T ss_pred ccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCCC
Confidence 5899999999999864 57899999986532 123456667766 348999 3567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDik 123 (321)
T cd05591 82 DLMFQIQRS---RKFDEPRSRFYAAEVTLALMFLH---RHGVIYRDLK 123 (321)
T ss_pred cHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 6666632 34889999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-13 Score=131.04 Aligned_cols=105 Identities=24% Similarity=0.354 Sum_probs=85.4
Q ss_pred eecccCCceEEEEEeCC-C----------CEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeecc
Q 007553 490 CIGTGGYGSVYRAQLSS-G----------RVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEH 549 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~-g----------~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~ 549 (599)
.||+|+||.||+|...+ + ..|++|.+.........|.+|+.+ .++||| ...+..++|+||
T Consensus 2 ~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~ 81 (259)
T cd05037 2 HLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVRDENIMVEEY 81 (259)
T ss_pred cccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEecCCcEEEEEc
Confidence 48999999999999753 3 257888776544335678888877 999999 122678999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++..... .+++..++.++.||+.||+||| ..+|+||||+
T Consensus 82 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dlk 128 (259)
T cd05037 82 VKFGPLDVFLHREKN--NVSLHWKLDVAKQLASALHYLE---DKKLVHGNVC 128 (259)
T ss_pred CCCCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHh---hCCeecccCc
Confidence 9999 888875332 5899999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-13 Score=137.44 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=89.2
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCC-----Ccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTD-----NDD 544 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~-----~~~ 544 (599)
+|...+.||+|+||.||++.. .+|+.||||++..... ....+.+|+++ .++||| ...+ ..+
T Consensus 1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 80 (372)
T cd07853 1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY 80 (372)
T ss_pred CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence 356677899999999999985 5799999999865321 23567889888 899999 1222 679
Q ss_pred eeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|+||++++ .+++.. ...+++.+...++.||++||+||| ..+|+||||+
T Consensus 81 lv~e~~~~~l~~~~~~---~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlk 130 (372)
T cd07853 81 VVTELMQSDLHKIIVS---PQPLSSDHVKVFLYQILRGLKYLH---SAGILHRDIK 130 (372)
T ss_pred EEeeccccCHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence 999999977 766653 235899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-13 Score=130.11 Aligned_cols=112 Identities=19% Similarity=0.284 Sum_probs=93.7
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeecccccc-
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G- 553 (599)
++...+.||+|+||.||+|...++..+|+|.+.........|.+|+.+ .++|+| ......++||||+++|
T Consensus 7 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~~~~~~ 86 (260)
T cd05073 7 SLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGS 86 (260)
T ss_pred ceeEEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEeCCCCc
Confidence 456677899999999999998778889999987654445678899887 999999 2336789999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... ...++|.+++.++.|++.|+.||| ..+++||||+
T Consensus 87 L~~~~~~~~-~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~ 129 (260)
T cd05073 87 LLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLR 129 (260)
T ss_pred HHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHH---hCCccccccC
Confidence 88887532 345899999999999999999999 6799999985
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-13 Score=134.77 Aligned_cols=105 Identities=20% Similarity=0.201 Sum_probs=84.4
Q ss_pred cceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc-----cccccC--------CCCCCcceeecc
Q 007553 488 KYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST-----DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~-----~l~H~n--------~~~~~~~lv~e~ 549 (599)
...||+|+||.||+|.. .+|+.||||.+..... +...+..|+.+ .++||| ...+..++||||
T Consensus 4 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~ 83 (324)
T cd05589 4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEY 83 (324)
T ss_pred EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcC
Confidence 46799999999999986 4689999999975321 12345555543 678999 456778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| ..+++. ..++|.+...++.||+.||+||| ..+|+||||+
T Consensus 84 ~~~~~L~~~~~~----~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrdlk 128 (324)
T cd05589 84 AAGGDLMMHIHT----DVFSEPRAVFYAACVVLGLQYLH---ENKIVYRDLK 128 (324)
T ss_pred CCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCC
Confidence 9999 656653 24899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-13 Score=136.27 Aligned_cols=111 Identities=19% Similarity=0.151 Sum_probs=90.2
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|+||.||++... +++.+|+|.+..... ....|.+|+.+ .++||+ ...+..++|||
T Consensus 2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e 81 (332)
T cd05623 2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMD 81 (332)
T ss_pred CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEe
Confidence 4566778999999999999964 578899999864221 12347777777 889998 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .++++.. ...+++.....++.||+.||+||| ..+|+||||+
T Consensus 82 y~~~g~L~~~l~~~--~~~l~~~~~~~~~~qi~~al~~lH---~~~iiHrDlk 129 (332)
T cd05623 82 YYVGGDLLTLLSKF--EDRLPEDMARFYLAEMVIAIDSVH---QLHYVHRDIK 129 (332)
T ss_pred ccCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCC
Confidence 99999 8888742 234889999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-13 Score=134.60 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=84.1
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc---cccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST---DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|.. .+++.||||.+.... .....+..|+.+ ..+||| ...+..++||||+++|
T Consensus 2 ~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g 81 (320)
T cd05590 2 VLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNGG 81 (320)
T ss_pred eeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCCc
Confidence 589999999999986 468999999986532 123456667666 347999 3567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 82 ~L~~~i~~~---~~l~~~~~~~~~~ql~~~L~~lH---~~~ivH~dlk 123 (320)
T cd05590 82 DLMFHIQKS---RRFDEARARFYAAEITSALMFLH---DKGIIYRDLK 123 (320)
T ss_pred hHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCC
Confidence 7777642 34889999999999999999999 8899999996
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-13 Score=129.86 Aligned_cols=113 Identities=22% Similarity=0.313 Sum_probs=93.1
Q ss_pred hhhccccceecccCCceEEEEEeC-CC---CEEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SG---RVVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g---~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
+.+|...+.||+|+||.||+|... ++ ..+|+|.+.... ....+|..|+++ .++||| ...+..++
T Consensus 4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 83 (268)
T cd05063 4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI 83 (268)
T ss_pred hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence 346777888999999999999864 33 379999987643 224678889887 899999 56677899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .+++..+. ..++|.+...++.|++.|++||| ..+++||||+
T Consensus 84 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dlk 134 (268)
T cd05063 84 ITEYMENGALDKYLRDHD--GEFSSYQLVGMLRGIAAGMKYLS---DMNYVHRDLA 134 (268)
T ss_pred EEEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccc
Confidence 99999999 77886533 35899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-13 Score=136.53 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=90.8
Q ss_pred HhhhccccceecccCCceEEEEE-eCCCCEEEEEEecCCc--hh--hHHHHHHhhc--cc-cccC--------CCCCCcc
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSE--TE--ELAFLETSST--DF-RHYN--------SHTDNDD 544 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~--~~--~~~f~~e~~~--~l-~H~n--------~~~~~~~ 544 (599)
...||.....||+|+|.+||+|+ ...++.+|||++...- .+ ..-...|-.+ .| .||. .+...+|
T Consensus 71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLY 150 (604)
T KOG0592|consen 71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLY 150 (604)
T ss_pred ChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceE
Confidence 34577778889999999999999 4578999999986531 11 1223334433 66 8998 6788899
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|+||++|| -+|+... ..++.....-+|++|..|++||| ..||||||||
T Consensus 151 FvLe~A~nGdll~~i~K~---Gsfde~caR~YAAeIldAleylH---~~GIIHRDlK 201 (604)
T KOG0592|consen 151 FVLEYAPNGDLLDLIKKY---GSFDETCARFYAAEILDALEYLH---SNGIIHRDLK 201 (604)
T ss_pred EEEEecCCCcHHHHHHHh---CcchHHHHHHHHHHHHHHHHHHH---hcCceeccCC
Confidence 999999999 8888843 34888888999999999999999 9999999997
|
|
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-13 Score=134.64 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=82.5
Q ss_pred eecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc---cccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST---DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|... +++.||||.++.... ....+..|..+ ..+||| ..++..++||||+++|
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg 81 (316)
T cd05592 2 VLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNGG 81 (316)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCC
Confidence 5899999999999964 588999999875321 12334445544 568999 3567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 82 ~L~~~~~~~---~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dlk 123 (316)
T cd05592 82 DLMFHIQSS---GRFDEARARFYAAEIICGLQFLH---KKGIIYRDLK 123 (316)
T ss_pred cHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCC
Confidence 6777642 34888999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-13 Score=130.92 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=94.1
Q ss_pred HhhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCC
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDN 542 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~ 542 (599)
++++|...+.||+|++|.||+|... .+..||+|....... ....|..|+.+ .++||| ...+.
T Consensus 4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~ 83 (277)
T cd05036 4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP 83 (277)
T ss_pred CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence 3566777888999999999999874 356789998865432 24568889887 999999 45667
Q ss_pred cceeecccccc--cccccCCCC----CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPEN----YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~----~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+++| .+++...+. ...++|.++++++.||++|++||| ..+++||||+
T Consensus 84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlk 143 (277)
T cd05036 84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE---ENHFIHRDIA 143 (277)
T ss_pred cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccc
Confidence 89999999999 888865321 235899999999999999999999 7789999986
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-13 Score=130.65 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=93.1
Q ss_pred hhccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
.+|.....+|+|+||.||+|+.. +...||+|.+.....+ ..+|.+|+.+ +++||| ...+..+
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 84 (275)
T cd05046 5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY 84 (275)
T ss_pred HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence 45666778999999999999863 3467999988664433 4578899988 999999 4567789
Q ss_pred eeecccccc--cccccCCCCC------CCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENY------ERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~------~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++...... ..++|.++..++.|+++|++||| ..+|+||||+
T Consensus 85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dlk 144 (275)
T cd05046 85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS---NARFVHRDLA 144 (275)
T ss_pred EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhh---hcCcccCcCc
Confidence 999999999 8888753321 25899999999999999999999 7789999986
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-13 Score=131.59 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=93.5
Q ss_pred hhhccccceecccCCceEEEEEeCC-----CCEEEEEEecCCch--hhHHHHHHhhc--cccccC---------CCCCCc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSS-----GRVVALKKLHRSET--EELAFLETSST--DFRHYN---------SHTDND 543 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~-----g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n---------~~~~~~ 543 (599)
.++|...+.||+|+||.||+|...+ +..||+|++..... +...+.+|+.+ +++||| ......
T Consensus 5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 84 (280)
T cd05043 5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP 84 (280)
T ss_pred hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence 4567777889999999999999754 68899999875432 24567888887 899999 235778
Q ss_pred ceeecccccc--cccccCCCCC-----CCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPENY-----ERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~~-----~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++||+++| .+++...+.. ..++|.+...++.||+.||+||| ..+++||||+
T Consensus 85 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~i~H~di~ 144 (280)
T cd05043 85 FVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIHKDIA 144 (280)
T ss_pred EEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccC
Confidence 9999999988 7888653221 56899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-13 Score=130.09 Aligned_cols=111 Identities=24% Similarity=0.334 Sum_probs=91.4
Q ss_pred hccccceecccCCceEEEEEeC-CC---CEEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SG---RVVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g---~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++...+.||+|+||.||+|... +| ..||||.+.... ....+|..|+.+ .++||| ..++..++||
T Consensus 5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~ 84 (269)
T cd05065 5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIIT 84 (269)
T ss_pred HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEE
Confidence 3555678999999999999964 33 369999987542 224678899888 999999 5677789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| ++++..+. ..++|.+++.++.|++.|++||| ..+++||||+
T Consensus 85 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~~l~~al~~lH---~~g~~H~dl~ 133 (269)
T cd05065 85 EFMENGALDSFLRQND--GQFTVIQLVGMLRGIAAGMKYLS---EMNYVHRDLA 133 (269)
T ss_pred ecCCCCcHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccC
Confidence 999999 77887533 35899999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-13 Score=134.77 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=83.0
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhh-c--cccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSS-T--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~-~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|+. .+|+.||+|.+..... ....+.+|.. + .++||| ...+..++||||+++|
T Consensus 2 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~ 81 (321)
T cd05603 2 VIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGG 81 (321)
T ss_pred eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCCC
Confidence 589999999999996 4689999999865321 1234555554 2 899999 3567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.. ...++..+...++.||++||+||| ..+|+||||+
T Consensus 82 ~L~~~l~~---~~~~~~~~~~~~~~qi~~~L~~lH---~~~ivH~Dlk 123 (321)
T cd05603 82 ELFFHLQR---ERCFLEPRARFYAAEVASAIGYLH---SLNIIYRDLK 123 (321)
T ss_pred CHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCC
Confidence 666653 234778888899999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-13 Score=139.57 Aligned_cols=106 Identities=22% Similarity=0.166 Sum_probs=89.1
Q ss_pred ceecccCCceEEEEEeC--CCC--EEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCcceeecccccc
Q 007553 489 YCIGTGGYGSVYRAQLS--SGR--VVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~--~g~--~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G 553 (599)
+.||+|.||.|++|.|. +|+ .||||.++.... ....|++|+.+ +|+||| .-+....||+|.++.|
T Consensus 116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV~ELaplG 195 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMVFELAPLG 195 (1039)
T ss_pred HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccchhhHHhhhcccc
Confidence 45999999999999984 344 589999976543 36789999998 999999 4558899999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
.+.|+.. ....+-......+|.|||.||+||. .+++|||||
T Consensus 196 SLldrLrka-~~~~llv~~Lcdya~QiA~aM~YLe---skrlvHRDL 238 (1039)
T KOG0199|consen 196 SLLDRLRKA-KKAILLVSRLCDYAMQIAKAMQYLE---SKRLVHRDL 238 (1039)
T ss_pred hHHHHHhhc-cccceeHHHHHHHHHHHHHHHHHHh---hhhhhhhhh
Confidence 8888862 2234667788999999999999999 999999998
|
|
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-13 Score=130.95 Aligned_cols=112 Identities=22% Similarity=0.256 Sum_probs=91.7
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|...+.||+|++|.||+|... +|+.||||.+...... ...+.+|+.+ +++||| ..++..++||||+
T Consensus 2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~ 81 (285)
T cd07861 2 YTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFL 81 (285)
T ss_pred ceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecC
Confidence 444567999999999999964 6899999998654221 3567788887 899999 4677889999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++ .++++.......+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~ 128 (285)
T cd07861 82 SMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCH---SRRVLHRDLK 128 (285)
T ss_pred CCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCC
Confidence 966 777765443456899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-13 Score=135.46 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=86.6
Q ss_pred ceeccc--CCceEEEEEe-CCCCEEEEEEecCCch--h-hHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 489 YCIGTG--GYGSVYRAQL-SSGRVVALKKLHRSET--E-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 489 ~~lg~g--~~g~v~~~~~-~~g~~vavK~l~~~~~--~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
.+||+| +|++||++.. .+|+.||+|++..... . ...+.+|+.+ .++||| ...+..++||||+++
T Consensus 4 ~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~ 83 (327)
T cd08227 4 TVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAY 83 (327)
T ss_pred hhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCC
Confidence 458998 6789999985 5789999999976432 2 3446668877 789999 456778999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++..+. ...++|.++..++.|+++||+||| ..+|+||||+
T Consensus 84 ~~l~~~~~~~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiH~dlk 128 (327)
T cd08227 84 GSAKDLICTHF-MDGMSELAIAYILQGVLKALDYIH---HMGYVHRSVK 128 (327)
T ss_pred CcHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCC
Confidence 9 77776432 234899999999999999999999 7899999996
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-13 Score=131.71 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=92.0
Q ss_pred HhhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCC
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDN 542 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~ 542 (599)
.+++|.....||+|+||.||+|... .+..||+|.+..... ....+.+|+.+ .++||| ...+.
T Consensus 4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~ 83 (288)
T cd05061 4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP 83 (288)
T ss_pred cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence 4556777788999999999998753 245899998865432 23467888877 889999 45677
Q ss_pred cceeecccccc--cccccCCC-------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPE-------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~-------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+++| .+++.... .....++....+++.|++.||+||| .++|+||||+
T Consensus 84 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dik 146 (288)
T cd05061 84 TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLA 146 (288)
T ss_pred cEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCCC
Confidence 89999999999 88886421 1234678889999999999999999 8899999986
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-13 Score=133.51 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=98.8
Q ss_pred ccHHHHHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC--------C--
Q 007553 473 ITFEEMIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DF-RHYN--------S-- 538 (599)
Q Consensus 473 ~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n--------~-- 538 (599)
++++++..++++|.....+|+|+||.||++.. .+++.+|+|.+........++.+|+.+ ++ +||| .
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~ 91 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKA 91 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEec
Confidence 45566777788899889999999999999986 568999999987644334556677776 66 8999 1
Q ss_pred ---CCCCcceeecccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 ---HTDNDDSSDEHLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 ---~~~~~~lv~e~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+...++|+||+++| .++++.. .....++|.....++.|++.||.||| ..+|+||||+
T Consensus 92 ~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlk 155 (291)
T cd06639 92 DKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLH---NNRIIHRDVK 155 (291)
T ss_pred cccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence 124579999999999 7776531 12345899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-13 Score=130.84 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=88.0
Q ss_pred hccccceecccCCceEEEEEe-CCCC----EEEEEEecCCchh--hHHHHHHhhc--cccccC-------CCCCCcceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGR----VVALKKLHRSETE--ELAFLETSST--DFRHYN-------SHTDNDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~----~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------~~~~~~~lv~ 547 (599)
+|...+.||+|+||.||+|.+ .+|+ .+++|.+...... ..++..|+.. +++||| ..+...++|+
T Consensus 8 ~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~~i~ 87 (279)
T cd05111 8 ELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQLVT 87 (279)
T ss_pred hceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCCccEEEE
Confidence 455667899999999999996 3454 4788887543222 3567777765 899999 3456678999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+. ..++|.....++.||+.||+||| ..+++||||+
T Consensus 88 e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlk 136 (279)
T cd05111 88 QLSPLGSLLDHVRQHR--DSLDPQRLLNWCVQIAKGMYYLE---EHRMVHRNLA 136 (279)
T ss_pred EeCCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCEeccccC
Confidence 999999 88887533 34899999999999999999999 7889999986
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.6e-13 Score=128.43 Aligned_cols=111 Identities=17% Similarity=0.243 Sum_probs=93.6
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
+|.....||+|+||.||+|...++..+|+|.+........+|.+|+.+ .++||+ ......++|+||+++|
T Consensus 5 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~ 84 (256)
T cd05112 5 ELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHG 84 (256)
T ss_pred HeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCC
Confidence 455667899999999999998778899999987654445678899988 999999 4566789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... ..++|.....++.|++.|++||| ..+++||||+
T Consensus 85 ~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~dl~ 127 (256)
T cd05112 85 CLSDYLRAQR--GKFSQETLLGMCLDVCEGMAYLE---SSNVIHRDLA 127 (256)
T ss_pred cHHHHHHhCc--cCCCHHHHHHHHHHHHHHHHHHH---HCCccccccc
Confidence 77877533 34789999999999999999999 7789999985
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-13 Score=140.41 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=87.2
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-CC-------------C--CC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN-SH-------------T--DN 542 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-~~-------------~--~~ 542 (599)
.++|...+.||+|+||.||+|.. .+++.||||++..... ...+|+.+ .++||| .. . ..
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~---~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 141 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQ---YKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIF 141 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCcc---hHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceE
Confidence 34677788899999999999986 4689999998854322 23357777 999999 10 1 12
Q ss_pred cceeecccccc-cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++||||++++ .+++... .....+++.....++.||++||+||| ..+|+|||||
T Consensus 142 l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH---~~~IiHrDLK 197 (440)
T PTZ00036 142 LNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIH---SKFICHRDLK 197 (440)
T ss_pred EEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCcC
Confidence 56899999988 7766531 23346899999999999999999999 7899999996
|
|
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-13 Score=130.46 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=89.7
Q ss_pred ccccceecccCCceEEEEEe-----CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC----------CCCCCcce
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-----SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN----------SHTDNDDS 545 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-----~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n----------~~~~~~~l 545 (599)
|.....||+|+||.||.+.+ .++..||+|.+...... ...|.+|+.+ .++||| ..+...++
T Consensus 6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 85 (284)
T cd05079 6 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKL 85 (284)
T ss_pred hhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEE
Confidence 45566799999999999974 25788999998755322 4578889888 999999 11356789
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .+++... ...++|.++..++.||+.||+||| ..+|+||||+
T Consensus 86 v~e~~~g~~L~~~l~~~--~~~~~~~~~~~i~~~i~~aL~~lH---~~gi~H~dlk 136 (284)
T cd05079 86 IMEFLPSGSLKEYLPRN--KNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLA 136 (284)
T ss_pred EEEccCCCCHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccc
Confidence 99999999 8888643 235899999999999999999999 8899999986
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.5e-13 Score=133.93 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=83.9
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--c-ccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--D-FRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~-l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|.. .+++.||+|.+..... ....+..|+.+ + .+||| ...+..++||||+++|
T Consensus 2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~~ 81 (329)
T cd05618 2 VIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGG 81 (329)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCCC
Confidence 589999999999996 4688999999975421 12346667766 3 48999 4567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++.. ...+++.....++.||+.||+||| ..+|+||||+
T Consensus 82 ~L~~~~~~---~~~l~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dik 123 (329)
T cd05618 82 DLMFHMQR---QRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLK 123 (329)
T ss_pred CHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCC
Confidence 666653 234899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-13 Score=130.91 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=84.5
Q ss_pred ecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--
Q 007553 491 IGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN-- 553 (599)
Q Consensus 491 lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G-- 553 (599)
||+|+||.||++.. .+|+.||+|++..... ....+..|+++ +++||| ......++||||+++|
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L 80 (277)
T cd05607 1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL 80 (277)
T ss_pred CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence 69999999999985 4689999999864321 12345567777 999999 4567789999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ....++|.++..++.||+.||+||| ..+|+||||+
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dik 122 (277)
T cd05607 81 KYHIYNV-GERGLEMERVIHYSAQITCGILHLH---SMDIVYRDMK 122 (277)
T ss_pred HHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHH---HCCEEEccCC
Confidence 5566432 2345899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-13 Score=134.27 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=84.5
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cc-cccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DF-RHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|.. .+++.||||.+..... ....+.+|+.+ ++ +||+ ...+..++||||+++|
T Consensus 2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~ 81 (327)
T cd05617 2 VIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGG 81 (327)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCCC
Confidence 589999999999986 4678999999975422 13446777776 55 6998 3567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++..+..++.||++||+||| ..+|+||||+
T Consensus 82 ~L~~~~~~~---~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlk 123 (327)
T cd05617 82 DLMFHMQRQ---RKLPEEHARFYAAEICIALNFLH---ERGIIYRDLK 123 (327)
T ss_pred cHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 6666532 34899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-13 Score=120.16 Aligned_cols=115 Identities=18% Similarity=0.121 Sum_probs=95.9
Q ss_pred hccccceecccCCceEEEEE-eCCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC-------------CCCCCccee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN-------------SHTDNDDSS 546 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n-------------~~~~~~~lv 546 (599)
.|...+.+|+|+|..||.++ +.++..+|+|++.....+ .....+|++. +++||| ....+.|++
T Consensus 22 Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll 101 (302)
T KOG2345|consen 22 RYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLL 101 (302)
T ss_pred eEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEE
Confidence 35556779999999999988 678999999999877644 5678899999 999999 234558999
Q ss_pred ecccccc--cccccCCC-CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPE-NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+.|...| .+++...+ .+..++..+.+.|+.||.+||.||| +..++++|||||
T Consensus 102 ~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH-~~~~~yAH~DiK 156 (302)
T KOG2345|consen 102 LPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALH-EKEPPYAHRDIK 156 (302)
T ss_pred eehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHh-ccCCcccccCCC
Confidence 9999999 77777532 3456899999999999999999999 556789999997
|
|
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-13 Score=135.38 Aligned_cols=114 Identities=24% Similarity=0.264 Sum_probs=88.6
Q ss_pred hhccccceecccCCceEEEEEeC------CCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC---------CCCCC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSET--EELAFLETSST--DF-RHYN---------SHTDN 542 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n---------~~~~~ 542 (599)
+.|...+.||+|+||.||+|... .++.||+|++..... ....+.+|+.+ .+ +||| ..+..
T Consensus 7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~ 86 (337)
T cd05054 7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGP 86 (337)
T ss_pred HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCC
Confidence 35666778999999999999642 247899999875432 23467788887 77 8999 24456
Q ss_pred cceeecccccc--cccccCCCC----------------------------------------------------------
Q 007553 543 DDSSDEHLANN--EHFLSAPEN---------------------------------------------------------- 562 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~---------------------------------------------------------- 562 (599)
+++|+||+++| .+++.....
T Consensus 87 ~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (337)
T cd05054 87 LMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELY 166 (337)
T ss_pred EEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHh
Confidence 78999999999 666643211
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 563 YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 563 ~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..+++|.++..++.||++||+||| ..+|+|||||
T Consensus 167 ~~~l~~~~~~~~~~qi~~aL~~lH---~~~ivHrDik 200 (337)
T cd05054 167 KEPLTLEDLISYSFQVARGMEFLA---SRKCIHRDLA 200 (337)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 136899999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-13 Score=129.57 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=90.6
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
+|.....||+|+||.||+|.. .+|+.||+|.+...... ...+.+|+.+ +++||| ...+..++||||++
T Consensus 10 ~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~ 89 (267)
T cd06646 10 DYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCG 89 (267)
T ss_pred hcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCC
Confidence 466667799999999999995 57899999998754322 3456778877 999999 35677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .++++.. ..+++.+...++.|+++||+||| ..+|+||||+
T Consensus 90 ~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~ 133 (267)
T cd06646 90 GGSLQDIYHVT---GPLSELQIAYVCRETLQGLAYLH---SKGKMHRDIK 133 (267)
T ss_pred CCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 99 7777632 35889999999999999999999 7899999985
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-13 Score=130.47 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=92.6
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
|...+.||.|++|.||+|+.. +|+.||||.+...... ...+.+|+.+ .++||| ...+..++||||++
T Consensus 2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 81 (284)
T cd07836 2 FKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMD 81 (284)
T ss_pred ceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCC
Confidence 555678999999999999964 6899999998764322 3457778887 999999 45677899999999
Q ss_pred cc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++ .+++........++|.+...++.||++||+||| ..+++||||+
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~h~dl~ 127 (284)
T cd07836 82 KDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCH---ENRVLHRDLK 127 (284)
T ss_pred ccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCC
Confidence 87 888875443456899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.3e-13 Score=133.27 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=83.2
Q ss_pred eecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc---cccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST---DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|... +|+.||||.++... .+...+..|+.+ ..+||+ ...+..++||||+++|
T Consensus 2 ~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g 81 (316)
T cd05620 2 VLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNGG 81 (316)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCCC
Confidence 5899999999999964 68999999997532 122345555555 468999 3567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++..+ ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~L~~~i~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlk 123 (316)
T cd05620 82 DLMFHIQDK---GRFDLYRATFYAAEIVCGLQFLH---SKGIIYRDLK 123 (316)
T ss_pred cHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCC
Confidence 6677642 34889999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.4e-13 Score=133.75 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=85.2
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cc-cccC--------CCCCCcceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DF-RHYN--------SHTDNDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~ 547 (599)
+|.....||+|+||.||+|... +++.||||.+..... ....+..|..+ .+ +||+ ...+..++||
T Consensus 1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (323)
T cd05616 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM 80 (323)
T ss_pred CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence 3555678999999999999854 578999999875321 12345555555 44 5666 3566789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.++..++.||+.||+||| ..+|+||||+
T Consensus 81 E~~~~g~L~~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlk 128 (323)
T cd05616 81 EYVNGGDLMYQIQQV---GRFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLK 128 (323)
T ss_pred cCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCEEecCCC
Confidence 999999 6666632 34889999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-13 Score=132.33 Aligned_cols=105 Identities=17% Similarity=0.263 Sum_probs=85.2
Q ss_pred eecccCCceEEEEEeCC--------CCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 490 CIGTGGYGSVYRAQLSS--------GRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~--------g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
.||+|+||.||+|.... ...||+|.+...... ..+|.+|+.+ .++||| ..++..++||||+
T Consensus 2 ~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~ 81 (258)
T cd05078 2 SLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEYV 81 (258)
T ss_pred CCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEecC
Confidence 48999999999998532 234888887654332 4567788877 899999 4557789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .++++.++ ..++|..++.++.||+.||+||| ..+|+||||+
T Consensus 82 ~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dlk 127 (258)
T cd05078 82 KFGSLDTYLKKNK--NLINISWKLEVAKQLAWALHFLE---DKGLTHGNVC 127 (258)
T ss_pred CCCcHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCc
Confidence 999 88887533 25899999999999999999999 8899999986
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.7e-13 Score=133.02 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=85.2
Q ss_pred ceecccCCceEEEEEe----CCCCEEEEEEecCCch-----hhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 489 YCIGTGGYGSVYRAQL----SSGRVVALKKLHRSET-----EELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~----~~g~~vavK~l~~~~~-----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
+.||+|+||.||++.. ..++.||||.+..... ....+.+|+.+ .++||| ..++..++||||
T Consensus 2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~ 81 (323)
T cd05584 2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY 81 (323)
T ss_pred ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence 3599999999999875 3578999999865321 13456778887 999999 456778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++... ..+.+.....++.||++||+||| ..+|+||||+
T Consensus 82 ~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk 127 (323)
T cd05584 82 LSGGELFMHLERE---GIFMEDTACFYLSEISLALEHLH---QQGIIYRDLK 127 (323)
T ss_pred CCCchHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 9999 7777642 34778888999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-13 Score=133.91 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=91.8
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
++|.....||+|+||.||++... +|..||+|.+...... ...+.+|+++ +++||| ...+..++||||
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 84 (331)
T cd06649 5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 84 (331)
T ss_pred ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeec
Confidence 45666778999999999999964 6889999998764322 4578899988 999999 356778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++... ..+++.....++.|++.||+|||+ ..+|+||||+
T Consensus 85 ~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~--~~~ivH~dlk 131 (331)
T cd06649 85 MDGGSLDQVLKEA---KRIPEEILGKVSIAVLRGLAYLRE--KHQIMHRDVK 131 (331)
T ss_pred CCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHhh--cCCEEcCCCC
Confidence 9999 8788742 348889999999999999999993 2369999996
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.7e-13 Score=128.48 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=86.8
Q ss_pred eecccCCceEEEEEe---CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC-------CCCCCcceeecccccc-
Q 007553 490 CIGTGGYGSVYRAQL---SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~---~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G- 553 (599)
.||+|+||.||+|.+ .++..+|+|++...... ..+|.+|+.+ .++||| ...+..++||||+++|
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~ 81 (257)
T cd05116 2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELGP 81 (257)
T ss_pred cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCCc
Confidence 489999999999975 35788999998654322 4578888887 999999 4567789999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++.....++.|++.||+||| ..+|+||||+
T Consensus 82 L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlk 122 (257)
T cd05116 82 LNKFLQKN---KHVTEKNITELVHQVSMGMKYLE---ETNFVHRDLA 122 (257)
T ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccc
Confidence 7888642 34899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-13 Score=131.21 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=92.5
Q ss_pred HhhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCC
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTD 541 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~ 541 (599)
..++|.....||+|+||.||++... ....+|+|.+..... ...++.+|+.+ ++ +||| ...+
T Consensus 10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 89 (293)
T cd05053 10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEG 89 (293)
T ss_pred CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCC
Confidence 3445666778999999999999863 236799999875432 23568888887 77 8999 4566
Q ss_pred Ccceeecccccc--cccccCC-------------CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAP-------------ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~-------------~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++| .++++.+ .....++|..+++++.|+|.|++||| ..+|+||||+
T Consensus 90 ~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~dlk 159 (293)
T cd05053 90 PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA---SKKCIHRDLA 159 (293)
T ss_pred CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCccccccc
Confidence 789999999999 7777532 12346899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-13 Score=130.16 Aligned_cols=114 Identities=22% Similarity=0.306 Sum_probs=92.7
Q ss_pred hhccccceecccCCceEEEEEeCC------CCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSS------GRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~------g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
++|...+.||+|+||.||+|...+ +..||||.+...... ...|.+|+++ +++||| ...+..+
T Consensus 5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~ 84 (280)
T cd05049 5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI 84 (280)
T ss_pred HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE
Confidence 345556779999999999998632 478999998765433 4678899988 999999 4567889
Q ss_pred eeecccccc--cccccCCC-----------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPE-----------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~-----------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++...+ ....++|.+...++.||+.|++||| ..+++||||+
T Consensus 85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~h~dlk 149 (280)
T cd05049 85 MVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLA---SQHFVHRDLA 149 (280)
T ss_pred EEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeeccccc
Confidence 999999999 88886432 2245889999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-13 Score=132.52 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=98.0
Q ss_pred ccHHHHHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC-------C---
Q 007553 473 ITFEEMIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DF-RHYN-------S--- 538 (599)
Q Consensus 473 ~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n-------~--- 538 (599)
+.++++..++++|.....||+|+||.||++.. .+++.+|+|.+........++.+|+.+ ++ +||| .
T Consensus 8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~ 87 (286)
T cd06638 8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKK 87 (286)
T ss_pred EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeec
Confidence 44566667788888888899999999999985 468899999886544334567778777 77 6999 1
Q ss_pred ---CCCCcceeecccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 ---HTDNDDSSDEHLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 ---~~~~~~lv~e~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++..++||||+++| .+++... .....+++.....++.|+++||.||| ..+|+||||+
T Consensus 88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk 151 (286)
T cd06638 88 DVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLH---VNKTIHRDVK 151 (286)
T ss_pred ccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHH---hCCccccCCC
Confidence 234579999999999 7776532 12345889999999999999999999 7899999985
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.2e-13 Score=129.52 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=87.6
Q ss_pred cccceecccCCceEEEEEe-----CCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC----------CCCCCccee
Q 007553 486 HIKYCIGTGGYGSVYRAQL-----SSGRVVALKKLHRSET--EELAFLETSST--DFRHYN----------SHTDNDDSS 546 (599)
Q Consensus 486 ~~~~~lg~g~~g~v~~~~~-----~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n----------~~~~~~~lv 546 (599)
.....||+|+||+||.+.+ .++..||+|.+..... ....|.+|+.+ +++||| ......++|
T Consensus 7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv 86 (283)
T cd05080 7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLI 86 (283)
T ss_pred eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEE
Confidence 4456799999999987653 3578999999876432 35678889988 999999 123457899
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++... .++|.++..++.|+++|++||| ..+|+||||+
T Consensus 87 ~e~~~~~~l~~~~~~~----~l~~~~~~~i~~~l~~~l~~lH---~~~i~H~dlk 134 (283)
T cd05080 87 MEYVPLGSLRDYLPKH----KLNLAQLLLFAQQICEGMAYLH---SQHYIHRDLA 134 (283)
T ss_pred ecCCCCCCHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccccC
Confidence 9999999 7777642 3899999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-13 Score=129.90 Aligned_cols=114 Identities=22% Similarity=0.266 Sum_probs=92.6
Q ss_pred hhccccceecccCCceEEEEEe------CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
.+|...+.+|+|+||.||++.. .++..+|+|.+...... ...+.+|+++ +++||| ...+..++
T Consensus 5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 84 (288)
T cd05093 5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 84 (288)
T ss_pred HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence 4566778899999999999974 23457899998765433 4578889888 999999 46678899
Q ss_pred eecccccc--cccccCCC----------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPE----------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~----------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .+++...+ ....++|.+.+.++.|++.||+||| ..+++||||+
T Consensus 85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH---~~~i~H~dlk 147 (288)
T cd05093 85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLA 147 (288)
T ss_pred EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccC
Confidence 99999999 77776422 1235899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.39 E-value=9e-13 Score=129.93 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=93.2
Q ss_pred hhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDND 543 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~ 543 (599)
.++|.....||+|+||.||++... ++..||+|.+..... ...+|.+|+.+ +++||| ..++..
T Consensus 4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~ 83 (288)
T cd05050 4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM 83 (288)
T ss_pred hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence 456777788999999999999853 467899999875432 24568889988 999999 456778
Q ss_pred ceeecccccc--cccccCCC-------------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPE-------------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~-------------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|+||+++| .+++.... ....++|.+++.++.|++.||+||| ..+++||||+
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH---~~~i~H~dl~ 157 (288)
T cd05050 84 CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLA 157 (288)
T ss_pred EEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCeeccccc
Confidence 9999999999 88886321 1134788999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=129.33 Aligned_cols=111 Identities=23% Similarity=0.315 Sum_probs=85.5
Q ss_pred ccccceecccCCceEEEEEe-C-CCCEEEEEEecCCchh---hHHHHHHhhc-----cccccC-------C------CCC
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-S-SGRVVALKKLHRSETE---ELAFLETSST-----DFRHYN-------S------HTD 541 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~-~g~~vavK~l~~~~~~---~~~f~~e~~~-----~l~H~n-------~------~~~ 541 (599)
|...+.||+|+||.||+|.. . +|+.||||++...... ...+.+|+.+ .++||| . ...
T Consensus 3 Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~ 82 (290)
T cd07862 3 YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRET 82 (290)
T ss_pred cceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCC
Confidence 44567799999999999985 2 4688999998654321 2345666654 457999 1 234
Q ss_pred Ccceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||++++ .+++.... ...+++.++..++.||+.||+||| ..+|+||||+
T Consensus 83 ~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH---~~~iiH~dlk 137 (290)
T cd07862 83 KLTLVFEHVDQDLTTYLDKVP-EPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLK 137 (290)
T ss_pred cEEEEEccCCCCHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCC
Confidence 578999999977 78886432 234899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.2e-13 Score=129.88 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=89.0
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCc--hhhHHHHHHhhc---cccccC--------CCCCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE--TEELAFLETSST---DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~--~~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~ 549 (599)
+|.....||+|+||.||+|.. .+|+.||+|++.... ....++..|+.. ..+||| ...+..++||||
T Consensus 2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~ 81 (283)
T cd06617 2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEV 81 (283)
T ss_pred CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhh
Confidence 466677899999999999986 469999999987643 223455556554 678999 356778999999
Q ss_pred cccc-cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCc-cccccccC
Q 007553 550 LANN-EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYR-KSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~-~i~Hrdl~ 599 (599)
|+++ .++++.. .....++|.....++.||+.||+||| +. +++||||+
T Consensus 82 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~~i~h~dlk 131 (283)
T cd06617 82 MDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLH---SKLSVIHRDVK 131 (283)
T ss_pred hcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCC
Confidence 9977 7777542 23356899999999999999999999 54 89999986
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.3e-13 Score=128.24 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=93.4
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||+|... +|+.||+|.++... .....+.+|+++ +++|++ ...+..++||
T Consensus 2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 81 (267)
T cd08224 2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL 81 (267)
T ss_pred CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence 35666788999999999999975 79999999886422 224578889988 999999 4567789999
Q ss_pred cccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... .....+++.+...++.|+++||+||| ..+|+||||+
T Consensus 82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~ 133 (267)
T cd08224 82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMH---SKRIMHRDIK 133 (267)
T ss_pred ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecCCcC
Confidence 999999 7777542 22345899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=130.19 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=90.6
Q ss_pred hhccccceecccCCceEEEEEeC-CCC--EEEEEEecCCc--hhhHHHHHHhhc--cc-cccC--------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGR--VVALKKLHRSE--TEELAFLETSST--DF-RHYN--------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~--~vavK~l~~~~--~~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv 546 (599)
++|...+.||+|+||.||+|... +|. .+|+|++.... .....|.+|+++ ++ +||| ..++..++|
T Consensus 7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv 86 (303)
T cd05088 7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 86 (303)
T ss_pred hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence 45666788999999999999864 454 45788776532 224578889887 77 8999 466778999
Q ss_pred ecccccc--cccccCCC-------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPE-------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||+++| .++++... ....+++.+++.++.||++|++||| ..+|+||||+
T Consensus 87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dlk 151 (303)
T cd05088 87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLA 151 (303)
T ss_pred EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH---hCCccccccc
Confidence 9999999 88876421 1235789999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-13 Score=130.17 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=89.6
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
|...+.||+|+||.||++.. .+++.||||.+...... ...+..|+.+ .++|++ ...+..++||||
T Consensus 2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~ 81 (285)
T cd05630 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL 81 (285)
T ss_pred ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence 44456799999999999985 46899999998654221 2456778887 999999 456778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++...+ ...+++.+...++.|++.||.||| ..+|+||||+
T Consensus 82 ~~g~~L~~~l~~~~-~~~l~~~~~~~~~~qi~~~l~~lH---~~~iiH~dik 129 (285)
T cd05630 82 MNGGDLKFHIYHMG-EAGFEEGRAVFYAAEICCGLEDLH---QERIVYRDLK 129 (285)
T ss_pred cCCCcHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCC
Confidence 9999 77775422 235889999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=129.24 Aligned_cols=114 Identities=23% Similarity=0.276 Sum_probs=92.5
Q ss_pred hhccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
++|...+.||+|+||.||+|... ++..+|+|.+...... ...|.+|+.+ +++||| ...+..++
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 84 (291)
T cd05094 5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM 84 (291)
T ss_pred HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence 35666778999999999999742 3457899998765433 4578889887 999999 56677899
Q ss_pred eecccccc--cccccCCC-------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPE-------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .+++.... ....++|.+++.++.||+.|++||| ..+|+||||+
T Consensus 85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlk 150 (291)
T cd05094 85 VFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA---SQHFVHRDLA 150 (291)
T ss_pred EEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccC
Confidence 99999999 88886432 1235899999999999999999999 8899999986
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.1e-13 Score=128.34 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=91.5
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|.....||+|+||.||+|.. .+++.||||.+.... .....|.+|+++ .++||| ...+..++|+
T Consensus 2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 81 (267)
T cd08228 2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL 81 (267)
T ss_pred cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence 3566677899999999999995 478999999875422 123568889888 999999 3567789999
Q ss_pred cccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... .....+++.+...++.||++||+||| ..+++||||+
T Consensus 82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~ 133 (267)
T cd08228 82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH---SRRVMHRDIK 133 (267)
T ss_pred EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCC
Confidence 999999 6666532 22345788899999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-13 Score=136.61 Aligned_cols=116 Identities=14% Similarity=0.186 Sum_probs=85.2
Q ss_pred HhhhccccceecccCCceEEEEEe-----------------CCCCEEEEEEecCCchh-hHHHHH--------------H
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL-----------------SSGRVVALKKLHRSETE-ELAFLE--------------T 528 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~-----------------~~g~~vavK~l~~~~~~-~~~f~~--------------e 528 (599)
..++|...+.||+|+||.||+|.. ..++.||||++...... ..+|.+ |
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE 222 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE 222 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence 356788899999999999999964 23568999998654322 233433 3
Q ss_pred hhc--cccccC---------------------CCCCCcceeecccccc--cccccCCC---------------------C
Q 007553 529 SST--DFRHYN---------------------SHTDNDDSSDEHLANN--EHFLSAPE---------------------N 562 (599)
Q Consensus 529 ~~~--~l~H~n---------------------~~~~~~~lv~e~~~~G--~~~l~~~~---------------------~ 562 (599)
+.+ +++|.+ ...+..++|||||++| .++++.+. .
T Consensus 223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~ 302 (507)
T PLN03224 223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP 302 (507)
T ss_pred HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence 333 565554 1235679999999999 77776321 1
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 563 YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 563 ~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...++|..+..++.|+++||+||| ..+|+||||+
T Consensus 303 ~~~~~~~~~~~i~~ql~~aL~~lH---~~~ivHrDLK 336 (507)
T PLN03224 303 QDKRDINVIKGVMRQVLTGLRKLH---RIGIVHRDIK 336 (507)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCc
Confidence 124678889999999999999999 7799999986
|
|
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.3e-13 Score=129.62 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=92.7
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
++|.....||.|+||.||+|... +++.||+|.+...... ...|.+|+++ +++||| ...+..++||||+
T Consensus 5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 84 (280)
T cd06611 5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFC 84 (280)
T ss_pred hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeecc
Confidence 34555566999999999999964 6899999998765433 4578889888 999999 4667789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.... ..+++.+...++.|+|.||+||| ..+|+||||+
T Consensus 85 ~~~~L~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~ 130 (280)
T cd06611 85 DGGALDSIMLELE--RGLTEPQIRYVCRQMLEALNFLH---SHKVIHRDLK 130 (280)
T ss_pred CCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 999 77776422 35899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.9e-13 Score=130.50 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=92.6
Q ss_pred hhhccccceecccCCceEEEEEe------CCCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTDN 542 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~~ 542 (599)
.++|...+.||+|+||.||+|.. ..+..||||.++.... ....+.+|+.+ ++ +||| ...+.
T Consensus 34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 113 (302)
T cd05055 34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGP 113 (302)
T ss_pred HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc
Confidence 35677788999999999999874 1345799999876432 24568889888 88 7999 45677
Q ss_pred cceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+++| .++++... ...++|.+...++.||+.|++||| ..+|+||||+
T Consensus 114 ~~lv~e~~~~~~L~~~i~~~~-~~~l~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlk 168 (302)
T cd05055 114 ILVITEYCCYGDLLNFLRRKR-ESFLTLEDLLSFSYQVAKGMAFLA---SKNCIHRDLA 168 (302)
T ss_pred eEEEEEcCCCCcHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeehhhhc
Confidence 89999999999 88887432 234899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-12 Score=132.39 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=86.4
Q ss_pred ccccceecccCCceEEEEEe----CCCCEEEEEEecCCch-----hhHHHHHHhhc--cc-cccC--------CCCCCcc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL----SSGRVVALKKLHRSET-----EELAFLETSST--DF-RHYN--------SHTDNDD 544 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~----~~g~~vavK~l~~~~~-----~~~~f~~e~~~--~l-~H~n--------~~~~~~~ 544 (599)
|...+.||+|+||.||++.. .+|+.||+|.+..... ....+..|+.+ .+ +||+ ...+..+
T Consensus 2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (332)
T cd05614 2 FELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLH 81 (332)
T ss_pred ceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEE
Confidence 45567799999999999874 3578999999864321 12346677776 66 5888 3566789
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++..+ ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 82 lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlk 132 (332)
T cd05614 82 LILDYVSGGEMFTHLYQR---DNFSEDEVRFYSGEIILALEHLH---KLGIVYRDIK 132 (332)
T ss_pred EEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCC
Confidence 999999999 7777642 34889999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=127.55 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=84.0
Q ss_pred eecccCCceEEEEEeCCC---CEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc-
Q 007553 490 CIGTGGYGSVYRAQLSSG---RVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~g---~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
.||+|+||.||+|...++ ..+++|.+..... ....|.+|+.+ .++||| ......++||||+++|
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~ 81 (268)
T cd05086 2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD 81 (268)
T ss_pred cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence 489999999999975333 3566777765432 24678889887 899999 4567789999999999
Q ss_pred -cccccCCC-CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPE-NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++++... .....++.....++.|||+||+||| +.+|+||||+
T Consensus 82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dik 126 (268)
T cd05086 82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMH---KHNFLHSDLA 126 (268)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCeeccCCc
Confidence 88887532 2234667778899999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-12 Score=130.45 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=90.7
Q ss_pred hhhccccceecccCCceEEEEEe--------CCCCEEEEEEecCCc--hhhHHHHHHhhc--cc-cccC--------CCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL--------SSGRVVALKKLHRSE--TEELAFLETSST--DF-RHYN--------SHT 540 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~--------~~g~~vavK~l~~~~--~~~~~f~~e~~~--~l-~H~n--------~~~ 540 (599)
..+|.....||+|+||.||+|.. .++..||+|.+.... .....+.+|+.+ .+ +||| ...
T Consensus 14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~ 93 (304)
T cd05101 14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 93 (304)
T ss_pred HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence 34566667899999999999974 134579999986532 224568888887 67 8999 456
Q ss_pred CCcceeecccccc--cccccCCC-------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN--EHFLSAPE-------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G--~~~l~~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...++||||+++| .+++..++ ....++|.+++.++.||++||+||| ..+|+||||+
T Consensus 94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~givH~dlk 164 (304)
T cd05101 94 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA---SQKCIHRDLA 164 (304)
T ss_pred CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH---HCCeeecccc
Confidence 6789999999999 88887532 1245889999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=128.49 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=91.0
Q ss_pred ccccceecccCCceEEEEEeC-----CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC----------CCCCCcce
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-----SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN----------SHTDNDDS 545 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-----~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n----------~~~~~~~l 545 (599)
|...+.||+|+||.||+|.+. ++..||||.+...... ...|.+|+.+ .++||| ..+...++
T Consensus 6 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~l 85 (284)
T cd05038 6 LKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRL 85 (284)
T ss_pred chhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEE
Confidence 444567999999999999863 3679999999765443 5678999987 999999 12456899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .+++.... ..++|.+.+.++.|++.||+||| ..+|+||||+
T Consensus 86 v~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~ 136 (284)
T cd05038 86 IMEYLPSGSLRDYLQRHR--DQINLKRLLLFSSQICKGMDYLG---SQRYIHRDLA 136 (284)
T ss_pred EEecCCCCCHHHHHHhCc--cccCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 99999999 88887533 24899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.3e-13 Score=132.06 Aligned_cols=104 Identities=19% Similarity=0.198 Sum_probs=83.8
Q ss_pred eecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cc-cccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DF-RHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|... +++.||||.+.... .....+..|+++ .+ +||| ...+..++||||+++|
T Consensus 2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~ 81 (318)
T cd05570 2 VLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNGG 81 (318)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCC
Confidence 5899999999999864 57899999997532 123456667666 44 7999 3566789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++... ..++|.+...++.||+.||+||| ..+|+||||+
T Consensus 82 ~L~~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlk 123 (318)
T cd05570 82 DLMFHIQRS---GRFDEPRARFYAAEIVLGLQFLH---ERGIIYRDLK 123 (318)
T ss_pred CHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeEccCCC
Confidence 6666532 34899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.2e-13 Score=126.40 Aligned_cols=112 Identities=17% Similarity=0.129 Sum_probs=86.9
Q ss_pred ccccceecccCCceEEEEEeCC-CCEEEEEEecCCchh------hHHHHHHhhccccccC--------CCCCCcceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLSS-GRVVALKKLHRSETE------ELAFLETSSTDFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~~-g~~vavK~l~~~~~~------~~~f~~e~~~~l~H~n--------~~~~~~~lv~e~ 549 (599)
|..-..||+|..|.||.+.+++ +...|+|.+...... +.++.+||-..++||- ...+..++||||
T Consensus 79 f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~mey 158 (459)
T KOG0610|consen 79 FRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEY 158 (459)
T ss_pred HHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEec
Confidence 3334559999999999999864 589999999765432 1233333333899998 467778999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+|| -.-|.++...+.++...+.=.|++|.-||+||| ..|||+||||
T Consensus 159 CpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLH---mlGivYRDLK 206 (459)
T KOG0610|consen 159 CPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLH---MLGIVYRDLK 206 (459)
T ss_pred CCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHH---hhceeeccCC
Confidence 9999 444554555667888888888999999999999 9999999997
|
|
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=127.54 Aligned_cols=109 Identities=19% Similarity=0.217 Sum_probs=84.4
Q ss_pred cceecccCCceEEEEEeCC-CC--EEEEEEecCCc---hhhHHHHHHhhc--cccccC----C----------CCCCcce
Q 007553 488 KYCIGTGGYGSVYRAQLSS-GR--VVALKKLHRSE---TEELAFLETSST--DFRHYN----S----------HTDNDDS 545 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~~-g~--~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n----~----------~~~~~~l 545 (599)
...||+|+||.||+|...+ +. .||||.++... .+...|..|+.+ .++||| . .....++
T Consensus 4 ~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~ 83 (272)
T cd05075 4 GKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVV 83 (272)
T ss_pred ccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEE
Confidence 4569999999999999753 33 58999886542 224568888887 999999 0 1234689
Q ss_pred eecccccc--cccccCC---CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAP---ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~---~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+|||++| .+++... .....++|.+...++.|++.|++||| ..+|+||||+
T Consensus 84 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk 139 (272)
T cd05075 84 ILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLS---SKSFIHRDLA 139 (272)
T ss_pred EEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccc
Confidence 99999999 6666321 12245899999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-12 Score=127.04 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=92.4
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|...+.||+|++|.||+|.. .+|+.|++|.+.... ....++.+|+++ .++||| ...+..++||||+
T Consensus 2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 81 (256)
T cd08529 2 FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYA 81 (256)
T ss_pred ceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeC
Confidence 55567899999999999986 468999999986432 235678888887 899999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .++++... ...+++.+...++.|+++||+||| ..+|+||||+
T Consensus 82 ~~~~L~~~l~~~~-~~~~~~~~~~~i~~~l~~al~~lH---~~~i~h~dl~ 128 (256)
T cd08529 82 ENGDLHKLLKMQR-GRPLPEDQVWRFFIQILLGLAHLH---SKKILHRDIK 128 (256)
T ss_pred CCCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 999 88887532 345899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=125.66 Aligned_cols=111 Identities=19% Similarity=0.236 Sum_probs=91.3
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC---------CCCCCcceeecccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN---------SHTDNDDSSDEHLA 551 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n---------~~~~~~~lv~e~~~ 551 (599)
.+|...+.+|+|+||.||+|..+ |..||+|.+.... ....|.+|+.+ .++||| ..++..++|+||++
T Consensus 6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~ 83 (256)
T cd05082 6 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA 83 (256)
T ss_pred HhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCc-hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCC
Confidence 35666778999999999999874 8889999886543 24568888888 999999 24456899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .++++.+. ...++|...+.++.||+.|++||| ..+|+||||+
T Consensus 84 ~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk 129 (256)
T cd05082 84 KGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDLA 129 (256)
T ss_pred CCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccccc
Confidence 99 88887532 234899999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=128.95 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=91.4
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
|...+.||+|+||.||++... +|+.||+|.+..... ....+.+|+.+ +++||| ...+..++||||++
T Consensus 3 ~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~ 82 (286)
T cd06622 3 IEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMD 82 (286)
T ss_pred hhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecC
Confidence 444566999999999999964 689999998865322 24578889888 999999 45677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++........+++.....++.|++.||.|||+ ..+|+||||+
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~ 130 (286)
T cd06622 83 AGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKE--EHNIIHRDVK 130 (286)
T ss_pred CCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh--cCCEeeCCCC
Confidence 99 7777653223458999999999999999999994 2589999985
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.9e-13 Score=131.98 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=81.9
Q ss_pred eecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc---cccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST---DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|... +++.||+|.+..... ....+..|... .++||| ...+..++||||+++|
T Consensus 2 ~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~ 81 (325)
T cd05602 2 VIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGG 81 (325)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCCC
Confidence 5899999999999864 678999999865321 12344444432 789999 4567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+...+...++.||++||+||| ..+|+||||+
T Consensus 82 ~L~~~~~~~---~~~~~~~~~~~~~qi~~~L~~lH---~~giiHrDlk 123 (325)
T cd05602 82 ELFYHLQRE---RCFLEPRARFYAAEIASALGYLH---SLNIVYRDLK 123 (325)
T ss_pred cHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCC
Confidence 7777642 24677888889999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-12 Score=132.26 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=91.9
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
++|...+.||+|+||.||++... +|+.+|+|.+...... ...+.+|+.+ .++||| ...+..++||||
T Consensus 5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 84 (333)
T cd06650 5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 84 (333)
T ss_pred hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEec
Confidence 45666778999999999999964 6889999988764322 4568899988 999999 466788999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++... ..+++.....++.|+++||+|||+ ..+|+||||+
T Consensus 85 ~~~~~L~~~l~~~---~~~~~~~~~~~~~~l~~~l~~lH~--~~~ivH~dlk 131 (333)
T cd06650 85 MDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVK 131 (333)
T ss_pred CCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCC
Confidence 9999 8888742 347888899999999999999993 2369999996
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-13 Score=139.93 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=91.3
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC---C-----CC-------
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN---S-----HT------- 540 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n---~-----~~------- 540 (599)
.+.|...+.||+|+||.||+|.. .+|+.||||.+.... .+...+.+|+.. .++|+| . ..
T Consensus 31 ~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~ 110 (496)
T PTZ00283 31 AKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPEN 110 (496)
T ss_pred CCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCccc
Confidence 45677788899999999999984 579999999986542 224567788877 889998 0 00
Q ss_pred -CCcceeecccccc--cccccCCC-CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 -DNDDSSDEHLANN--EHFLSAPE-NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 -~~~~lv~e~~~~G--~~~l~~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..+++||||+++| .+++..+. ....+++.....++.|++.||+||| ..+|+||||+
T Consensus 111 ~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH---~~~IiHrDLK 170 (496)
T PTZ00283 111 VLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVH---SKHMIHRDIK 170 (496)
T ss_pred ceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCC
Confidence 1257999999999 77886532 2346888999999999999999999 7899999996
|
|
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=127.22 Aligned_cols=111 Identities=19% Similarity=0.252 Sum_probs=90.4
Q ss_pred hccccceecccCCceEEEEEeCC----CCEEEEEEecCCc--hhhHHHHHHhhc--cccccC-------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSS----GRVVALKKLHRSE--TEELAFLETSST--DFRHYN-------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~----g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e 548 (599)
+|.....||+|+||.||+|...+ ...||||...... .....|.+|+.+ .++||| ...+..++|||
T Consensus 7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~e 86 (270)
T cd05056 7 DITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVME 86 (270)
T ss_pred hceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEEE
Confidence 35556789999999999998643 2468999886543 234678889888 899999 34566789999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.... ..++|.+++.++.|++.|++||| ..+++||||+
T Consensus 87 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~lH---~~~~~H~dl~ 134 (270)
T cd05056 87 LAPLGELRSYLQVNK--YSLDLASLILYSYQLSTALAYLE---SKRFVHRDIA 134 (270)
T ss_pred cCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccC
Confidence 99999 88887532 34899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=130.46 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=91.5
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|...+.||+|+||.||++.. .+|..+|+|.+...... ..++.+|+++ +++||| ...+..++||||+
T Consensus 2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~ 81 (308)
T cd06615 2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHM 81 (308)
T ss_pred CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeecc
Confidence 466678899999999999985 46888999988654222 3568889988 899999 4678889999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++... ..+++.....++.||++||+|||+ ..+++||||+
T Consensus 82 ~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~--~~~i~H~dl~ 127 (308)
T cd06615 82 DGGSLDQVLKKA---GRIPENILGKISIAVLRGLTYLRE--KHKIMHRDVK 127 (308)
T ss_pred CCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh--hCCEEECCCC
Confidence 999 8888742 348899999999999999999994 2589999985
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=129.25 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=91.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
.+|...+.||+|+||.||+|.. .+|+.||+|.+...... ...+.+|+.+ .++||| ..++..++||||+
T Consensus 19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~ 98 (297)
T cd06656 19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL 98 (297)
T ss_pred hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeeccc
Confidence 3456667799999999999984 57999999998754332 4557788887 899999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.. ..+++.++..++.|++.||+||| ..+|+||||+
T Consensus 99 ~~~~L~~~~~~----~~~~~~~~~~~~~~l~~~L~~LH---~~~i~H~dL~ 142 (297)
T cd06656 99 AGGSLTDVVTE----TCMDEGQIAAVCRECLQALDFLH---SNQVIHRDIK 142 (297)
T ss_pred CCCCHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 999 777763 23789999999999999999999 7899999996
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=129.04 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=92.1
Q ss_pred HHhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CC------
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SH------ 539 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~------ 539 (599)
.+.++|...+.+|+|+||.||+|... +|+.||||+++.... ....+.+|+.+ .++||| ..
T Consensus 4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~ 83 (302)
T cd07864 4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD 83 (302)
T ss_pred hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence 34567777888999999999999974 689999999965432 13456778887 899999 11
Q ss_pred ----CCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 540 ----TDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 540 ----~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
....++|+||++++ .+++..+ ...++|.+...++.||+.||+||| ..+|+||||+
T Consensus 84 ~~~~~~~~~lv~e~~~~~l~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~ 143 (302)
T cd07864 84 FKKDKGAFYLVFEYMDHDLMGLLESG--LVHFSEDHIKSFMKQLLEGLNYCH---KKNFLHRDIK 143 (302)
T ss_pred ccccCCcEEEEEcccCccHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 22678999999988 6666643 235899999999999999999999 7799999985
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=131.92 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=80.9
Q ss_pred ecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc---cc--cccC--------CCCCCcceeeccccc
Q 007553 491 IGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST---DF--RHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 491 lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~---~l--~H~n--------~~~~~~~lv~e~~~~ 552 (599)
||+|+||.||+|.. .+|+.||||++..... +...+..|..+ .. +||+ ...+..++||||+++
T Consensus 1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~ 80 (330)
T cd05586 1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG 80 (330)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence 69999999999985 4689999999864321 12234445544 23 7998 356778999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++.. ...+++.+...++.||++||+||| ..+|+||||+
T Consensus 81 g~L~~~l~~---~~~~~~~~~~~~~~qil~al~~LH---~~~ivHrDlk 123 (330)
T cd05586 81 GELFWHLQK---EGRFSEDRAKFYIAELVLALEHLH---KYDIVYRDLK 123 (330)
T ss_pred ChHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCC
Confidence 9 667763 234889999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=127.42 Aligned_cols=112 Identities=15% Similarity=0.250 Sum_probs=90.7
Q ss_pred hhccccceecccCCceEEEEEeC-CCC----EEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGR----VVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~----~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv 546 (599)
.+|...+.||+|+||.||+|... +|. .||+|.+..... ...++.+|+.+ +++||| ...+..++|
T Consensus 7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v 86 (279)
T cd05057 7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLI 86 (279)
T ss_pred HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCceEEE
Confidence 34555678999999999999863 333 689998876543 24578889888 999999 334788999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||+++| .+++.... ..++|...+.++.||++|++||| ..+|+||||+
T Consensus 87 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~di~ 136 (279)
T cd05057 87 TQLMPLGCLLDYVRNHK--DNIGSQYLLNWCVQIAKGMSYLE---EKRLVHRDLA 136 (279)
T ss_pred EecCCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCEEecccC
Confidence 9999999 88887533 34899999999999999999999 6899999986
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=129.41 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=90.7
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|.....||+|+||.||+|... +++.||+|.+...... ...+.+|+.+ +++||| ...+..++||||+
T Consensus 7 ~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~ 86 (301)
T cd07873 7 TYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYL 86 (301)
T ss_pred ceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEecc
Confidence 4566678999999999999864 6889999998654322 3457778887 999999 4567789999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++. .+++.... ..+++.....++.||++||+||| ..+|+||||+
T Consensus 87 ~~~l~~~l~~~~--~~~~~~~~~~~~~qi~~aL~~lH---~~~i~H~dlk 131 (301)
T cd07873 87 DKDLKQYLDDCG--NSINMHNVKLFLFQLLRGLNYCH---RRKVLHRDLK 131 (301)
T ss_pred ccCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence 977 77776532 34789999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-12 Score=127.94 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=97.9
Q ss_pred ccHHHHHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC--------C--
Q 007553 473 ITFEEMIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DF-RHYN--------S-- 538 (599)
Q Consensus 473 ~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n--------~-- 538 (599)
.++.++..+.+.|.....+|.|+||.||+|.. .+++.+|+|.+........++..|+.+ ++ +||| .
T Consensus 6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~ 85 (282)
T cd06636 6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKK 85 (282)
T ss_pred hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence 45666667778888888999999999999996 468999999987655445567777776 55 7999 1
Q ss_pred ----CCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 ----HTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 ----~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..+..++||||+++| .+++...+ ...+++.....++.||++||+||| ..+|+||||+
T Consensus 86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dl~ 148 (282)
T cd06636 86 SPPGHDDQLWLVMEFCGAGSVTDLVKNTK-GNALKEDWIAYICREILRGLAHLH---AHKVIHRDIK 148 (282)
T ss_pred cccCCCCEEEEEEEeCCCCcHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 234578999999999 77776432 234788889999999999999999 7899999985
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-12 Score=119.69 Aligned_cols=106 Identities=17% Similarity=0.084 Sum_probs=76.4
Q ss_pred ceecccCCceEEEEEeCCCCEEEEEEecCCchh----------hHHH-----------------HHHhhc--cccccC--
Q 007553 489 YCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE----------ELAF-----------------LETSST--DFRHYN-- 537 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~----------~~~f-----------------~~e~~~--~l~H~n-- 537 (599)
..||+|+||.||+|...+|+.||||.++..... ...| ..|+.. ++.|++
T Consensus 3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~ 82 (190)
T cd05147 3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIP 82 (190)
T ss_pred CccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 459999999999999878999999999654211 0111 236655 666554
Q ss_pred ----CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 ----SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ----~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
......++||||++++ ...... ...+++.+..+++.|++.||+|+|| ..+|+||||+
T Consensus 83 ~p~~~~~~~~~iVmE~i~g~~l~~~~~~---~~~~~~~~~~~i~~qi~~~L~~l~H--~~giiHrDlk 145 (190)
T cd05147 83 CPEPILLKSHVLVMEFIGDDGWAAPRLK---DAPLSESKARELYLQVIQIMRILYQ--DCRLVHADLS 145 (190)
T ss_pred CCcEEEecCCEEEEEEeCCCCCcchhhh---cCCCCHHHHHHHHHHHHHHHHHHHH--hCCcccCCCC
Confidence 2223348999999988 322221 2348899999999999999999932 5689999996
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=129.75 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=88.4
Q ss_pred HhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHh----hc--cccccC--------CCCCCcce
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETS----ST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~----~~--~l~H~n--------~~~~~~~l 545 (599)
..++|..-..||+|+||+||.++- .+|..+|+|+|+.+......-++.+ .+ ..++|. -+.+.+||
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL 218 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL 218 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence 456788888899999999999995 4699999999987654333323333 33 555665 57889999
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+||| ...|... ..|+.......+++...|+.-+| ..+|||||||
T Consensus 219 iMEylPGGD~mTLL~~~---~~L~e~~arfYiaE~vlAI~~iH---~~gyIHRDIK 268 (550)
T KOG0605|consen 219 IMEYLPGGDMMTLLMRK---DTLTEDWARFYIAETVLAIESIH---QLGYIHRDIK 268 (550)
T ss_pred EEEecCCccHHHHHHhc---CcCchHHHHHHHHHHHHHHHHHH---HcCcccccCC
Confidence 99999999 7777742 24777777777889999999999 9999999997
|
|
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=129.12 Aligned_cols=113 Identities=26% Similarity=0.277 Sum_probs=89.4
Q ss_pred hccccceecccCCceEEEEEeCC---------------CCEEEEEEecCCch--hhHHHHHHhhc--cccccC-------
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSS---------------GRVVALKKLHRSET--EELAFLETSST--DFRHYN------- 537 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~---------------g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n------- 537 (599)
+|...+.||+|+||.||++.... ...||||.+..... ....|.+|+++ +++|||
T Consensus 6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~ 85 (295)
T cd05097 6 QLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGV 85 (295)
T ss_pred hCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEE
Confidence 45556779999999999887532 23589999876432 24568899988 999999
Q ss_pred -CCCCCcceeecccccc--cccccCCC---------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 -SHTDNDDSSDEHLANN--EHFLSAPE---------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 -~~~~~~~lv~e~~~~G--~~~l~~~~---------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+..++||||+++| .+++..+. ....++|.+.+.++.|+++||+||| ..+++||||+
T Consensus 86 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlk 156 (295)
T cd05097 86 CVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLA---SLNFVHRDLA 156 (295)
T ss_pred EcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHH---hcCeeccccC
Confidence 5677889999999999 77775421 1124789999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-12 Score=129.25 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=90.5
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
.|.....+|+|++|.||+|.. .+++.||+|.+...... ...+.+|+.+ .++||| ..++..++||||++
T Consensus 21 ~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~ 100 (296)
T cd06654 21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLA 100 (296)
T ss_pred ceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccC
Confidence 345556799999999999984 56899999998764332 4567788887 899999 45677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++... .+++.+...++.|++.|++||| ..+|+||||+
T Consensus 101 ~~~L~~~~~~~----~~~~~~~~~i~~ql~~aL~~LH---~~gi~H~dLk 143 (296)
T cd06654 101 GGSLTDVVTET----CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIK 143 (296)
T ss_pred CCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 99 7777632 3789999999999999999999 7899999996
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=128.42 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=88.5
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
+|.....+|+|++|.||+|... +|+.||+|++..... ....+.+|+.+ .++||| ...+..++||||
T Consensus 2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~ 81 (286)
T cd07847 2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEY 81 (286)
T ss_pred ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEec
Confidence 3555667999999999999975 589999999865322 13457788888 999999 356678999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| ..+... ...++|.++..++.|+++||+||| ..+|+||||+
T Consensus 82 ~~~~~l~~~~~~---~~~~~~~~~~~~~~ql~~~l~~LH---~~~i~H~dl~ 127 (286)
T cd07847 82 CDHTVLNELEKN---PRGVPEHLIKKIIWQTLQAVNFCH---KHNCIHRDVK 127 (286)
T ss_pred cCccHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCC
Confidence 9999 444432 234899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=128.60 Aligned_cols=109 Identities=22% Similarity=0.290 Sum_probs=88.7
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh------hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE------ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~------~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
|...+.||+|++|.||+|... +|+.||||++...... ...+..|+++ .++||| ...+..++||
T Consensus 2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~ 81 (298)
T cd07841 2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF 81 (298)
T ss_pred ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence 444567999999999999964 6899999999754322 3456678877 899999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+ +| .+++.... ..++|....+++.||++||+||| ..+|+||||+
T Consensus 82 e~~-~~~L~~~i~~~~--~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~ 129 (298)
T cd07841 82 EFM-ETDLEKVIKDKS--IVLTPADIKSYMLMTLRGLEYLH---SNWILHRDLK 129 (298)
T ss_pred ccc-CCCHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCC
Confidence 999 66 88887532 35899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-12 Score=128.96 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=91.4
Q ss_pred HhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++.+|...+.||+|+||.||+|.. .+|..||+|++.....+ ...+.+|+.+ .++|+| ..++..++|+
T Consensus 3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~ 82 (291)
T cd07870 3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF 82 (291)
T ss_pred ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence 345677778899999999999985 46899999998654322 3457788877 999999 4566789999
Q ss_pred cccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||++++ .+++.... ..+.+.+...++.||+.||+||| ..+|+||||+
T Consensus 83 e~~~~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlk 130 (291)
T cd07870 83 EYMHTDLAQYMIQHP--GGLHPYNVRLFMFQLLRGLAYIH---GQHILHRDLK 130 (291)
T ss_pred ecccCCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 999866 66665422 34788889999999999999999 6799999986
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=129.14 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=91.0
Q ss_pred hhccccceecccCCceEEEEEeC--------CCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS--------SGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTD 541 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~--------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~ 541 (599)
++|...+.||+|+||.||++... ++..+|+|.+..... ...++..|+++ .+ +||| ...+
T Consensus 18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~ 97 (307)
T cd05098 18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG 97 (307)
T ss_pred HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC
Confidence 45666778999999999998742 235799999976432 24567888887 66 7999 4567
Q ss_pred Ccceeecccccc--cccccCCCC-------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAPEN-------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~~-------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++| .+++..++. ...++|.+++.++.||+.|++||| ..+++||||+
T Consensus 98 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlk 167 (307)
T cd05098 98 PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA---SKKCIHRDLA 167 (307)
T ss_pred ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCccccccc
Confidence 789999999999 888875321 235899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-12 Score=120.35 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=90.7
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|.....+|.|+||.|...+. .+|..+|.|.++.... +.+-..+|..+ .+.||. .+.+.++||||
T Consensus 45 dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvme 124 (355)
T KOG0616|consen 45 DFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVME 124 (355)
T ss_pred hhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEEe
Confidence 455567799999999999986 4688999999976532 22335567776 889998 57888999999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| ..||+. ..+++.+...=+|+||+.|++||| +..|++||||
T Consensus 125 yv~GGElFS~Lrk---~~rF~e~~arFYAAeivlAleylH---~~~iiYRDLK 171 (355)
T KOG0616|consen 125 YVPGGELFSYLRK---SGRFSEPHARFYAAEIVLALEYLH---SLDIIYRDLK 171 (355)
T ss_pred ccCCccHHHHHHh---cCCCCchhHHHHHHHHHHHHHHHH---hcCeeeccCC
Confidence 99999 888884 234888898999999999999999 8999999997
|
|
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=132.18 Aligned_cols=110 Identities=22% Similarity=0.089 Sum_probs=88.6
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC-------C-------CCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN-------S-------HTD 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n-------~-------~~~ 541 (599)
.++|.....||+|+||.||++.- .+|+.||||.+.... .....+.+|+.+ .++||| . ...
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 99 (359)
T cd07876 20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQ 99 (359)
T ss_pred hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccc
Confidence 35677778899999999999985 468999999986532 224567788887 999999 1 113
Q ss_pred Ccceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||++++ .++++. .+++.+...++.||+.||+||| ..+|+||||+
T Consensus 100 ~~~lv~e~~~~~l~~~~~~-----~~~~~~~~~~~~qi~~~L~~LH---~~~ivHrDlk 150 (359)
T cd07876 100 DVYLVMELMDANLCQVIHM-----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLK 150 (359)
T ss_pred eeEEEEeCCCcCHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 468999999988 666652 2788889999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=127.81 Aligned_cols=110 Identities=18% Similarity=0.194 Sum_probs=88.9
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
+|...+.||+|+||.||+|... +++.||+|++..... ....+.+|+++ .++||| ...+..++|+||
T Consensus 2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 81 (286)
T cd07846 2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEF 81 (286)
T ss_pred ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEec
Confidence 3555678999999999999975 589999999864322 13467788888 899999 466778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .++... ...++|.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~~~~~l~~~~~~---~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~h~~l~ 127 (286)
T cd07846 82 VDHTVLDDLEKY---PNGLDESRVRKYLFQILRGIEFCH---SHNIIHRDIK 127 (286)
T ss_pred CCccHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 9999 444432 223899999999999999999999 7799999985
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-12 Score=127.99 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=89.1
Q ss_pred hccccceecccCCceEEEEEeC-CCC--EEEEEEecCCc--hhhHHHHHHhhc--cc-cccC--------CCCCCcceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGR--VVALKKLHRSE--TEELAFLETSST--DF-RHYN--------SHTDNDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~--~vavK~l~~~~--~~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~ 547 (599)
+|.....||+|+||.||+|... ++. .+|+|.++... .....|.+|+.+ ++ +||| ...+..++|+
T Consensus 3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~ 82 (297)
T cd05089 3 DIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAI 82 (297)
T ss_pred cceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEE
Confidence 4666778999999999999864 343 47888887432 224568889887 77 7999 3556789999
Q ss_pred cccccc--cccccCCC-------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPE-------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .++++... ....+++.+...++.|++.|++||| ..+|+||||+
T Consensus 83 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dlk 146 (297)
T cd05089 83 EYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS---EKQFIHRDLA 146 (297)
T ss_pred EecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCcCC
Confidence 999999 77876421 1134889999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-12 Score=128.03 Aligned_cols=110 Identities=19% Similarity=0.242 Sum_probs=89.7
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|.....||+|+||.||+|.. .+|+.||+|++...... ...+.+|+.+ +++||| ...+..++|+||+
T Consensus 2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 81 (284)
T cd07839 2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYC 81 (284)
T ss_pred ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecC
Confidence 34456799999999999996 46899999998653221 3457788887 899999 5677889999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++ .+++.... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~~~l~~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dl~ 126 (284)
T cd07839 82 DQDLKKYFDSCN--GDIDPEIVKSFMFQLLKGLAFCH---SHNVLHRDLK 126 (284)
T ss_pred CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCC
Confidence 987 77776422 34899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-12 Score=127.30 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=87.7
Q ss_pred ccceecccCCceEEEEEe-CCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 487 IKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
..+.||+|+||.||+|.. .+++.||+|.+..... ....+.+|+.+ +++||| ...+..++||||+++|
T Consensus 8 ~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~ 87 (277)
T cd06642 8 KLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGG 87 (277)
T ss_pred HHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCC
Confidence 345599999999999985 4578999999875432 24568888888 999999 4567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.. ..+++.....++.|+++|++||| ..+++||||+
T Consensus 88 ~L~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~ivH~dl~ 128 (277)
T cd06642 88 SALDLLKP----GPLEETYIATILREILKGLDYLH---SERKIHRDIK 128 (277)
T ss_pred cHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHh---cCCeeccCCC
Confidence 777763 24889999999999999999999 7899999985
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-13 Score=143.90 Aligned_cols=119 Identities=12% Similarity=0.164 Sum_probs=93.9
Q ss_pred HhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC----------CCCCCcc
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN----------SHTDNDD 544 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n----------~~~~~~~ 544 (599)
..++|.....||+|+||.||++.. ..+..||+|.+.... .....|..|+.+ .++||| ...+.++
T Consensus 11 ~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~ly 90 (1021)
T PTZ00266 11 RLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLY 90 (1021)
T ss_pred ccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEE
Confidence 345677778899999999999995 457889999886532 224578889988 999999 1234578
Q ss_pred eeecccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCC----ccccccccC
Q 007553 545 SSDEHLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKY----RKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~----~~i~Hrdl~ 599 (599)
+||||+++| .++|... .....+++...+.|+.||+.||+|||+... .+|+||||+
T Consensus 91 IVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLK 152 (1021)
T PTZ00266 91 ILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLK 152 (1021)
T ss_pred EEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCc
Confidence 999999999 7777642 123458999999999999999999996432 569999996
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-12 Score=137.52 Aligned_cols=110 Identities=29% Similarity=0.516 Sum_probs=89.8
Q ss_pred CCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECC
Q 007553 285 NLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVS 364 (599)
Q Consensus 285 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 364 (599)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36788888888888888888888889999999998888888888888899999999999988888888888889999999
Q ss_pred CCcCcccCCccCCCC----CeeecccCccceeCC
Q 007553 365 KNNLSGVIPKSVFRV----PGLKWSENNLEVENP 394 (599)
Q Consensus 365 ~n~l~~~~~~~~~~~----~~l~~~~n~~~~~~~ 394 (599)
+|.++|.+|..+... ..+++.+|...+..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999988888766432 456666666554433
|
|
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-12 Score=125.28 Aligned_cols=105 Identities=25% Similarity=0.310 Sum_probs=84.1
Q ss_pred eecccCCceEEEEEeC----CCCEEEEEEecCCc--hhhHHHHHHhhc--cccccC---------CCCCCcceeeccccc
Q 007553 490 CIGTGGYGSVYRAQLS----SGRVVALKKLHRSE--TEELAFLETSST--DFRHYN---------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n---------~~~~~~~lv~e~~~~ 552 (599)
.||+|+||.||+|... ++..||+|++.... .....|.+|+.+ .++||| ......++|+||+++
T Consensus 2 ~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~ 81 (262)
T cd05058 2 VIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKH 81 (262)
T ss_pred cccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCCC
Confidence 5899999999999853 24579999985432 224578888877 999999 234457899999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++.... ..+++...+.++.||++|++||| ..+|+||||+
T Consensus 82 ~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk 125 (262)
T cd05058 82 GDLRNFIRSET--HNPTVKDLIGFGLQVAKGMEYLA---SKKFVHRDLA 125 (262)
T ss_pred CCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCccccccC
Confidence 9 88887533 23688889999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-12 Score=126.95 Aligned_cols=113 Identities=24% Similarity=0.315 Sum_probs=90.7
Q ss_pred hccccceecccCCceEEEEEeCC-C-----CEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSS-G-----RVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~-g-----~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
+|.....||+|+||.||+|.... + ..||+|.+...... ..+|.+|+.+ .++||| ...+..++
T Consensus 6 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~ 85 (283)
T cd05048 6 AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCM 85 (283)
T ss_pred HcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEE
Confidence 45556779999999999998632 2 57999998754322 4568889987 999999 45677899
Q ss_pred eecccccc--cccccCCCC-------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPEN-------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~-------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|||+++| .+++..... ...+++.+...++.|++.||+||| ..+|+||||+
T Consensus 86 ~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH---~~~i~H~dlk 151 (283)
T cd05048 86 LFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS---SHHFVHRDLA 151 (283)
T ss_pred EEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccc
Confidence 99999999 788864211 145889999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.1e-13 Score=137.13 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=100.3
Q ss_pred cHHHHHHHhhhccccceecccCCceEEEEE-eCCCCEEEEEEecCCchhhHHHHHHhhc---cccccC------------
Q 007553 474 TFEEMIQATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLETSST---DFRHYN------------ 537 (599)
Q Consensus 474 ~~~~l~~at~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~~~~f~~e~~~---~l~H~n------------ 537 (599)
.++.+...++-|.....||.|.+|.||+++ .++|+.+|||++......+.+-..|..+ .-+|||
T Consensus 10 ~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~ 89 (953)
T KOG0587|consen 10 DLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKD 89 (953)
T ss_pred chhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEec
Confidence 345555566667777889999999999998 5689999999998876555554455555 779999
Q ss_pred -CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 -SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 -~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++++|+|||||.+| .+.+..-. +..++|.....|+.++.+|+.||| ..+++|||++
T Consensus 90 ~~~~DqLWLVMEfC~gGSVTDLVKn~~-g~rl~E~~IaYI~re~lrgl~HLH---~nkviHRDik 150 (953)
T KOG0587|consen 90 PGNGDQLWLVMEFCGGGSVTDLVKNTK-GNRLKEEWIAYILREILRGLAHLH---NNKVIHRDIK 150 (953)
T ss_pred CCCCCeEEEEeeccCCccHHHHHhhhc-ccchhhHHHHHHHHHHHHHHHHHh---hcceeeeccc
Confidence 5789999999999999 77777533 556999999999999999999999 8899999986
|
|
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-12 Score=137.68 Aligned_cols=112 Identities=11% Similarity=-0.031 Sum_probs=90.1
Q ss_pred ccccceecccCCceEEEEEe-CC-CCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SS-GRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~-g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
|.....+|+|++|.||+|.- .+ ++.||+|.+...... ...+..|+.+ .++||| ...+..++||||++
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~ 148 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGS 148 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCC
Confidence 66678899999999999974 33 678888877554333 3456778887 999999 45678999999999
Q ss_pred cc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .++++.. ....++++.+...++.||+.||+||| ..+|+|||||
T Consensus 149 gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlk 196 (478)
T PTZ00267 149 GGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVH---SRKMMHRDLK 196 (478)
T ss_pred CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCcC
Confidence 99 7777642 22345888999999999999999999 7899999996
|
|
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-12 Score=128.37 Aligned_cols=112 Identities=16% Similarity=0.292 Sum_probs=88.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCC----EEEEEEecCCchh--hHHHHHHhhc--cccccC-------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGR----VVALKKLHRSETE--ELAFLETSST--DFRHYN-------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~----~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------~~~~~~~lv 546 (599)
.+|...+.||+|+||.||+|.. .+|. .||+|.+...... ..++.+|+.+ .++||| ...+..++|
T Consensus 7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~v 86 (303)
T cd05110 7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQLV 86 (303)
T ss_pred hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCCceee
Confidence 3456667799999999999985 3454 4788988654322 3468888887 999999 334557799
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||+++| .+++..+. ..+++.....++.||+.||+||| ..+|+||||+
T Consensus 87 ~e~~~~g~l~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dik 136 (303)
T cd05110 87 TQLMPHGCLLDYVHEHK--DNIGSQLLLNWCVQIAKGMMYLE---ERRLVHRDLA 136 (303)
T ss_pred ehhcCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHh---hcCeeccccc
Confidence 9999999 77777432 34889999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.8e-13 Score=138.66 Aligned_cols=118 Identities=13% Similarity=0.035 Sum_probs=86.7
Q ss_pred HHHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC---------------C
Q 007553 477 EMIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN---------------S 538 (599)
Q Consensus 477 ~l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n---------------~ 538 (599)
++...+++|...+.||+|+||.||+|.. ..++.||||+++.......++..|+.+ +++|.+ .
T Consensus 123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~ 202 (467)
T PTZ00284 123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN 202 (467)
T ss_pred ccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc
Confidence 3444567788888999999999999985 468899999996543323334444444 444333 2
Q ss_pred CCCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 HTDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 ~~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.....++||||+.+. .+++..+ ..+++.+...|+.||+.||+|||+ ..+|+|||||
T Consensus 203 ~~~~~~iv~~~~g~~l~~~l~~~---~~l~~~~~~~i~~qi~~aL~yLH~--~~gIiHrDlK 259 (467)
T PTZ00284 203 ETGHMCIVMPKYGPCLLDWIMKH---GPFSHRHLAQIIFQTGVALDYFHT--ELHLMHTDLK 259 (467)
T ss_pred CCceEEEEEeccCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh--cCCeecCCCC
Confidence 234578999998655 7777642 358999999999999999999993 1599999997
|
|
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-12 Score=124.56 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=90.1
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCch------hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET------EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~------~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
|...+.||+|++|.||+|... +++.||+|.+..... ....+.+|+.+ .++||| ...+..++|+
T Consensus 2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~ 81 (258)
T cd06632 2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL 81 (258)
T ss_pred ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence 344567999999999999975 789999998865321 23568888887 999999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.+...++.||++|++||| ..+|+||||+
T Consensus 82 e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~ 129 (258)
T cd06632 82 ELVPGGSLAKLLKKY---GSFPEPVIRLYTRQILLGLEYLH---DRNTVHRDIK 129 (258)
T ss_pred EecCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 999999 8888742 34899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-12 Score=124.90 Aligned_cols=111 Identities=21% Similarity=0.295 Sum_probs=91.4
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeecccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G 553 (599)
.+|...+.||+|+||.||+|.. .++.||+|.+.... ....|.+|+.+ .++||| ...+..++||||+++|
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~-~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~~~ 83 (254)
T cd05083 6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV-TAQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSKG 83 (254)
T ss_pred HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc-hHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCCCC
Confidence 3466677899999999999986 68889999986543 24568888887 999999 3445679999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++..+. ...+++.++..++.|++.|++||| ..+++||||+
T Consensus 84 ~L~~~l~~~~-~~~~~~~~~~~~~~qi~~al~~lH---~~~~~H~dl~ 127 (254)
T cd05083 84 NLVNFLRTRG-RALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLA 127 (254)
T ss_pred CHHHHHHhcC-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccC
Confidence 88887532 335899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-12 Score=124.84 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=87.5
Q ss_pred eecccCCceEEEEEeC--C--CCEEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCcceeecccccc-
Q 007553 490 CIGTGGYGSVYRAQLS--S--GRVVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~--~--g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G- 553 (599)
.||+|+||.||+|... + +..+|+|.+..... ...++.+|+.+ .++||| ..++..++||||+++|
T Consensus 2 ~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~ 81 (257)
T cd05060 2 ELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLGP 81 (257)
T ss_pred ccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCCCc
Confidence 5899999999999853 2 26899999876544 35678889887 899999 4566789999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... .++|..+..++.|++.||+||| ..+++||||+
T Consensus 82 L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~ 122 (257)
T cd05060 82 LLKYLKKRR---EIPVSDLKELAHQVAMGMAYLE---SKHFVHRDLA 122 (257)
T ss_pred HHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHh---hcCeeccCcc
Confidence 88887532 5899999999999999999999 7789999986
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=126.71 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=91.7
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|++|.||+|.. .+|..+|||.+.... ....+|.+|+.+ .++||| ..++..++|||
T Consensus 3 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e 82 (267)
T cd08229 3 NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLE 82 (267)
T ss_pred hhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEE
Confidence 455567799999999999995 578999999886532 124578889888 899999 45677899999
Q ss_pred ccccc--cccccC-CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSA-PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~-~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.. ......++|.+...++.||++||+||| ..+++||||+
T Consensus 83 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~ 133 (267)
T cd08229 83 LADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMH---SRRVMHRDIK 133 (267)
T ss_pred ecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 99999 777763 122345899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-12 Score=125.32 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=90.4
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCch-------hhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-------EELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-------~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
|...+.||+|++|.||+|.- .+++.||+|.+..... ....+..|+.+ +++||| ..++..++|
T Consensus 2 ~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v 81 (268)
T cd06630 2 WLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLF 81 (268)
T ss_pred ccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEE
Confidence 55567899999999999984 5789999999864321 13568888888 999999 456778999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||+++| .+++... .++++.....++.||+.||+||| ..+++||||+
T Consensus 82 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~ql~~al~~LH---~~~i~H~~i~ 130 (268)
T cd06630 82 VEWMAGGSVSHLLSKY---GAFKEAVIINYTEQLLRGLSYLH---ENQIIHRDVK 130 (268)
T ss_pred EeccCCCcHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 9999999 7777642 35889999999999999999999 7799999985
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=128.57 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=84.6
Q ss_pred ceecccCCceEEEEEeC---CCCEEEEEEecCCchhhHHHHHHhhc--cccccC----------CCCCCcceeecccccc
Q 007553 489 YCIGTGGYGSVYRAQLS---SGRVVALKKLHRSETEELAFLETSST--DFRHYN----------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~---~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n----------~~~~~~~lv~e~~~~G 553 (599)
..||+|+||.||+|... ++..||+|.+..... ...+.+|+.+ +++||| ......++|+||++++
T Consensus 7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~-~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~~ 85 (317)
T cd07867 7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI-SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEHD 85 (317)
T ss_pred eEeccCCCeeEEEEEecCCCccceEEEEEecCCCC-cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCCc
Confidence 46999999999999964 357899999875432 3457788887 999999 2345678999999988
Q ss_pred -cccccCC------CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAP------ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~------~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... .....+++.....++.||+.||+||| ..+|+||||+
T Consensus 86 l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivH~Dlk 135 (317)
T cd07867 86 LWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH---ANWVLHRDLK 135 (317)
T ss_pred HHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCC
Confidence 6666421 11235788999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-12 Score=128.75 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=84.0
Q ss_pred ceecccCCceEEEEEeC---CCCEEEEEEecCCchhhHHHHHHhhc--cccccC----------CCCCCcceeecccccc
Q 007553 489 YCIGTGGYGSVYRAQLS---SGRVVALKKLHRSETEELAFLETSST--DFRHYN----------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~---~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n----------~~~~~~~lv~e~~~~G 553 (599)
..||+|+||.||+|... +++.||+|.+..... ...+.+|+.+ +++||| ......++||||++++
T Consensus 7 ~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~~ 85 (317)
T cd07868 7 CKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI-SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHD 85 (317)
T ss_pred cccccCCCeEEEEEEEccCCCCceEEEEEECCCCC-cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccCCC
Confidence 46999999999999854 467899999865432 3456778888 999999 1234578999999988
Q ss_pred -cccccCCC------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPE------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... ....+++.....++.||+.||+||| ..+|+|||||
T Consensus 86 l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivHrDlk 135 (317)
T cd07868 86 LWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLK 135 (317)
T ss_pred HHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCC
Confidence 66654211 1235788889999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-13 Score=111.87 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=90.1
Q ss_pred ceecccCCceEEEEE-eCCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeecccccc-
Q 007553 489 YCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
+.||+|.||+||+|+ ...++.||.|+.+....+ ...-.+||.+ +++|.| .+.+.+.+|+||+...
T Consensus 8 ekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~cdqdl 87 (292)
T KOG0662|consen 8 EKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDL 87 (292)
T ss_pred HhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhhHHH
Confidence 459999999999999 556899999998765433 4667889988 999999 5778889999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+|...- +..++......++.|..+|+.|.| +.-++|||||
T Consensus 88 kkyfdsl--ng~~d~~~~rsfmlqllrgl~fch---shnvlhrdlk 128 (292)
T KOG0662|consen 88 KKYFDSL--NGDLDPEIVRSFMLQLLRGLGFCH---SHNVLHRDLK 128 (292)
T ss_pred HHHHHhc--CCcCCHHHHHHHHHHHHhhhhhhh---hhhhhhccCC
Confidence 8787743 234888999999999999999999 8899999996
|
|
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-12 Score=126.23 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=86.4
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|.....||+|+||.||+|.. .+++.||+|.+.... ....+|.+|+.+ +++||| ...+..++||||+
T Consensus 2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 81 (279)
T cd06619 2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM 81 (279)
T ss_pred cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence 345556799999999999984 578999999986542 224568889887 899999 4566788999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| ..+. .+++.....++.|++.||+||| +.+|+||||+
T Consensus 82 ~~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk 122 (279)
T cd06619 82 DGGSLDVYR-------KIPEHVLGRIAVAVVKGLTYLW---SLKILHRDVK 122 (279)
T ss_pred CCCChHHhh-------cCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCC
Confidence 999 3332 2678888999999999999999 8899999986
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-12 Score=126.88 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=86.9
Q ss_pred ceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccccc--c
Q 007553 489 YCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--E 554 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~ 554 (599)
..||+|+||.||++.. .++..||||.+...... ...+.+|+.. .++||| ..++..++||||+++| .
T Consensus 28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~ 107 (292)
T cd06658 28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALT 107 (292)
T ss_pred hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHH
Confidence 3489999999999985 46889999998654433 4568888887 899999 4677889999999999 6
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 555 HFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 555 ~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++... .+++.+...++.||+.||+||| ..+|+||||+
T Consensus 108 ~~~~~~----~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlk 145 (292)
T cd06658 108 DIVTHT----RMNEEQIATVCLSVLRALSYLH---NQGVIHRDIK 145 (292)
T ss_pred HHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCC
Confidence 776532 3889999999999999999999 7799999985
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-12 Score=127.86 Aligned_cols=107 Identities=11% Similarity=0.049 Sum_probs=81.8
Q ss_pred HhhhccccceecccCCceEEEEEeC--CCCEEEEEEecCCc-----h-hhHHHHHHhhc--cccccC-----CCCCCcce
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLS--SGRVVALKKLHRSE-----T-EELAFLETSST--DFRHYN-----SHTDNDDS 545 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~--~g~~vavK~l~~~~-----~-~~~~f~~e~~~--~l~H~n-----~~~~~~~l 545 (599)
..++|.....||+|+||+||+|... +++.||||++.... . ....|.+|+++ +++|+| ...+..++
T Consensus 16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~~~~~L 95 (365)
T PRK09188 16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLATGKDGL 95 (365)
T ss_pred ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEcCCcEE
Confidence 3456777888999999999999864 57888999875321 1 14568899998 999999 34456899
Q ss_pred eecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc-C
Q 007553 546 SDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL-Y 599 (599)
Q Consensus 546 v~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl-~ 599 (599)
||||+++| -..... .. ...++.++++||+||| ..+|+|||| |
T Consensus 96 VmE~~~G~~L~~~~~--~~-------~~~~~~~i~~aL~~lH---~~gIiHrDL~K 139 (365)
T PRK09188 96 VRGWTEGVPLHLARP--HG-------DPAWFRSAHRALRDLH---RAGITHNDLAK 139 (365)
T ss_pred EEEccCCCCHHHhCc--cc-------hHHHHHHHHHHHHHHH---HCCCeeCCCCC
Confidence 99999988 322221 01 2467889999999999 789999999 5
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-12 Score=142.00 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=90.9
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|.....||+|+||.||+|... +++.||||++..... ....+.+|+.+ .++||| ...+..++||
T Consensus 4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm 83 (669)
T cd05610 4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM 83 (669)
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence 45666788999999999999964 689999999865321 13557778777 889999 3567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++...+.|+.||+.||+||| ..+|+||||+
T Consensus 84 Ey~~g~~L~~li~~~---~~l~~~~~~~i~~qil~aL~yLH---~~gIiHrDLK 131 (669)
T cd05610 84 EYLIGGDVKSLLHIY---GYFDEEMAVKYISEVALALDYLH---RHGIIHRDLK 131 (669)
T ss_pred eCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCcc
Confidence 999999 7787642 24788999999999999999999 6799999996
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-12 Score=124.10 Aligned_cols=107 Identities=24% Similarity=0.331 Sum_probs=90.2
Q ss_pred eecccCCceEEEEEeCC----CCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQLSS----GRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~----g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|.... +..||+|.+...... ...+.+|++. .++||| ......++||||+++|
T Consensus 2 ~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~ 81 (262)
T cd00192 2 KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGG 81 (262)
T ss_pred ccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccCC
Confidence 58999999999999743 789999999765433 4678889888 889999 4567789999999999
Q ss_pred --cccccCCCC------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPEN------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++..... ...++|.+...++.|+++||+||| ..+|+||||+
T Consensus 82 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~ 132 (262)
T cd00192 82 DLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA---SKKFVHRDLA 132 (262)
T ss_pred cHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHH---cCCcccCccC
Confidence 888875421 256899999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-12 Score=119.93 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=94.9
Q ss_pred cHHHHHHHhhhccccceecccCCceEEEEE-eCCCCEEEEEEecCCchh-hHHHHHHhhc---cccccC--------CCC
Q 007553 474 TFEEMIQATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE-ELAFLETSST---DFRHYN--------SHT 540 (599)
Q Consensus 474 ~~~~l~~at~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~-~~~f~~e~~~---~l~H~n--------~~~ 540 (599)
+++|+-.-|++. +|+|.|+.|--+. +.+|..+|||+++..... +....+|+++ .=.|+| .+.
T Consensus 74 ~F~d~YkLt~e~-----LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd 148 (463)
T KOG0607|consen 74 KFEDMYKLTSEL-----LGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDD 148 (463)
T ss_pred hHHHHHHhHHHH-----hcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhccc
Confidence 366666666544 9999999999777 678999999999876444 5678889998 558999 567
Q ss_pred CCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+..|+|||=|.+| -..++.+ +.++..++-++..+||.||.||| .++|.|||||
T Consensus 149 ~~FYLVfEKm~GGplLshI~~~---~~F~E~EAs~vvkdia~aLdFlH---~kgIAHRDlK 203 (463)
T KOG0607|consen 149 TRFYLVFEKMRGGPLLSHIQKR---KHFNEREASRVVKDIASALDFLH---TKGIAHRDLK 203 (463)
T ss_pred ceEEEEEecccCchHHHHHHHh---hhccHHHHHHHHHHHHHHHHHHh---hcCcccccCC
Confidence 7789999999999 6666643 23788889999999999999999 9999999997
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-12 Score=130.52 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=90.4
Q ss_pred HhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc---cccccC--------CCCCCcc
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST---DFRHYN--------SHTDNDD 544 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~---~l~H~n--------~~~~~~~ 544 (599)
..++|....++|+|+||.|+.+.+. +++.+|||.+++.. .+......|.++ --+||- -+.+.++
T Consensus 366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~ 445 (694)
T KOG0694|consen 366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLF 445 (694)
T ss_pred cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEE
Confidence 3456888899999999999999974 57899999998753 224556667776 227997 4678899
Q ss_pred eeeccccccc--ccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANNE--HFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G~--~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.||||+.||+ .+.+ ...++.+++.=+|+.|+.||+||| ..+|||||||
T Consensus 446 fvmey~~Ggdm~~~~~----~~~F~e~rarfyaAev~l~L~fLH---~~~IIYRDlK 495 (694)
T KOG0694|consen 446 FVMEYVAGGDLMHHIH----TDVFSEPRARFYAAEVVLGLQFLH---ENGIIYRDLK 495 (694)
T ss_pred EEEEecCCCcEEEEEe----cccccHHHHHHHHHHHHHHHHHHH---hcCceeeecc
Confidence 9999999993 3333 234899999999999999999999 8999999997
|
|
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-12 Score=127.51 Aligned_cols=114 Identities=23% Similarity=0.264 Sum_probs=90.7
Q ss_pred hhccccceecccCCceEEEEEeC-----------------CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC----
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-----------------SGRVVALKKLHRSET--EELAFLETSST--DFRHYN---- 537 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-----------------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n---- 537 (599)
++|...+.||+|+||.||++... ++..||+|.+..... ....|.+|+.+ .++|||
T Consensus 5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~ 84 (296)
T cd05095 5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL 84 (296)
T ss_pred hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence 34666778999999999987532 234689999975432 24578899888 999999
Q ss_pred ----CCCCCcceeecccccc--cccccCCCC--------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 ----SHTDNDDSSDEHLANN--EHFLSAPEN--------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ----~~~~~~~lv~e~~~~G--~~~l~~~~~--------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+..++||||+++| .+++..... ...++|.+...++.||+.|++||| ..+|+||||+
T Consensus 85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dlk 157 (296)
T cd05095 85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS---SLNFVHRDLA 157 (296)
T ss_pred EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCeecccCC
Confidence 4667789999999999 777764321 134788999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-12 Score=124.28 Aligned_cols=111 Identities=23% Similarity=0.214 Sum_probs=93.0
Q ss_pred hhccccceecccCCceEEEEEeCC-CCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSS-GRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~-g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
++|.....+|+|+||.||+|...+ ++.+|+|.+..... ..++.+|+++ +++||| ...+..++|+||++
T Consensus 3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~ 81 (256)
T cd06612 3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED-LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCG 81 (256)
T ss_pred ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH-HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCC
Confidence 346666779999999999999754 78999999876433 5678899987 899999 45677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++... ...++|.+...++.|+++||+||| ..+|+||||+
T Consensus 82 ~~~L~~~l~~~--~~~l~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~ 126 (256)
T cd06612 82 AGSVSDIMKIT--NKTLTEEEIAAILYQTLKGLEYLH---SNKKIHRDIK 126 (256)
T ss_pred CCcHHHHHHhC--ccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 99 8888642 245899999999999999999999 7799999985
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-12 Score=126.09 Aligned_cols=111 Identities=24% Similarity=0.277 Sum_probs=91.1
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|.....||.|++|.||+|.. .+|+.||||++...... ...+.+|+++ +++||| ...+..++||||+
T Consensus 2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~ 81 (284)
T cd07860 2 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFL 81 (284)
T ss_pred ceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeecc
Confidence 55667899999999999986 46899999998654321 3568889988 999999 4667889999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++ .+++.... ...+++.+...++.||++||+||| ..+++||||+
T Consensus 82 ~~~l~~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~lh---~~~i~H~~l~ 127 (284)
T cd07860 82 HQDLKKFMDASP-LSGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLK 127 (284)
T ss_pred ccCHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 866 77776432 345899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-12 Score=127.09 Aligned_cols=112 Identities=20% Similarity=0.289 Sum_probs=91.4
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
++|.....||+|++|.||+|... +++.||||.+...... ...+.+|+.+ .++||| ...+..++||||
T Consensus 5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (291)
T cd07844 5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY 84 (291)
T ss_pred cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence 34666678999999999999964 6899999998654322 3457788888 999999 456778999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++. .+++.... ..+++.....++.|+++||+||| ..+|+||||+
T Consensus 85 ~~~~L~~~~~~~~--~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~dl~ 130 (291)
T cd07844 85 LDTDLKQYMDDCG--GGLSMHNVRLFLFQLLRGLAYCH---QRRVLHRDLK 130 (291)
T ss_pred CCCCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCC
Confidence 9966 77776432 25889999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-12 Score=126.57 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=88.6
Q ss_pred ccccceecccCCceEEEEEeC------CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
|...+.||+|+||.||+|... ....+|+|.+..... ....+.+|+.+ .++||| ...+..++|
T Consensus 2 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 81 (290)
T cd05045 2 LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLI 81 (290)
T ss_pred ccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEE
Confidence 445677999999999999852 235789998865432 24568889887 999999 456778999
Q ss_pred ecccccc--cccccCCC---------------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPE---------------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~---------------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||+++| .+++.... ....++|.+.+.++.||+.|++||| ..+|+||||+
T Consensus 82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~ivH~dik 154 (290)
T cd05045 82 VEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLA 154 (290)
T ss_pred EEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHH---HCCeehhhhh
Confidence 9999999 77765311 1235889999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-12 Score=126.11 Aligned_cols=113 Identities=20% Similarity=0.268 Sum_probs=91.1
Q ss_pred hccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
++.....+|+|+||.||++... ++..+|+|.+...... ...|.+|+.+ .++||| ...+..++|
T Consensus 6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 85 (280)
T cd05092 6 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMV 85 (280)
T ss_pred hceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEE
Confidence 4555677999999999998632 3568999988765433 4678889888 999999 456778999
Q ss_pred ecccccc--cccccCCCC------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPEN------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||+++| .+++...+. ...++|.+++.++.|++.|++||| ..+|+||||+
T Consensus 86 ~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~~i~H~dlk 149 (280)
T cd05092 86 FEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA---SLHFVHRDLA 149 (280)
T ss_pred EecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH---HCCeeccccc
Confidence 9999999 777764321 135899999999999999999999 8899999986
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-12 Score=131.14 Aligned_cols=111 Identities=21% Similarity=0.100 Sum_probs=89.1
Q ss_pred HhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------C------CC
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------S------HT 540 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~------~~ 540 (599)
..++|...+.||+|+||.||++.- ..++.||||++..... ....+.+|+.+ .++||| . ..
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 94 (355)
T cd07874 15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF 94 (355)
T ss_pred hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence 345677778899999999999984 4688999999965322 24567788887 899999 1 11
Q ss_pred CCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...++||||++++ .+++.. .+++.++..++.||++||+||| ..+|+||||+
T Consensus 95 ~~~~lv~e~~~~~l~~~~~~-----~l~~~~~~~~~~qi~~aL~~LH---~~givHrDik 146 (355)
T cd07874 95 QDVYLVMELMDANLCQVIQM-----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLK 146 (355)
T ss_pred ceeEEEhhhhcccHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 3468999999988 766652 3789999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-12 Score=125.09 Aligned_cols=114 Identities=21% Similarity=0.309 Sum_probs=91.8
Q ss_pred hhccccceecccCCceEEEEEeC------CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
++|.....||+|+||.||+|... .+..||+|.+..... ....|.+|+.+ .++||| ......+
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~ 85 (277)
T cd05032 6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTL 85 (277)
T ss_pred HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcE
Confidence 45666788999999999999863 236899999865432 24568888887 899999 4567789
Q ss_pred eeecccccc--cccccCCCC-------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPEN-------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~-------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++..... ...++|.+++.++.||+.|++||| ..+|+||||+
T Consensus 86 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~di~ 146 (277)
T cd05032 86 VVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA---AKKFVHRDLA 146 (277)
T ss_pred EEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccC
Confidence 999999999 777764321 234789999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-12 Score=131.29 Aligned_cols=110 Identities=22% Similarity=0.091 Sum_probs=88.7
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC-------C-------CCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN-------S-------HTD 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n-------~-------~~~ 541 (599)
.++|...+.||+|+||.||++.- ..++.||||++.... .....+.+|+.+ .++||| . ...
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~ 102 (364)
T cd07875 23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 102 (364)
T ss_pred hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccC
Confidence 45677778899999999999984 468899999986532 224567788887 899999 1 113
Q ss_pred Ccceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||++++ .+++.. .+++.+...++.|+++||+||| ..+|+||||+
T Consensus 103 ~~~lv~e~~~~~l~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlk 153 (364)
T cd07875 103 DVYIVMELMDANLCQVIQM-----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLK 153 (364)
T ss_pred eEEEEEeCCCCCHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCC
Confidence 468999999988 777652 3789999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-12 Score=124.44 Aligned_cols=106 Identities=23% Similarity=0.183 Sum_probs=87.7
Q ss_pred eecccCCceEEEEEeCC--C--CEEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCcceeecccccc-
Q 007553 490 CIGTGGYGSVYRAQLSS--G--RVVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~--g--~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G- 553 (599)
.||+|++|.||+|.+.+ + ..||||.+..... ....|.+|+.+ +++||| ......++|+||+++|
T Consensus 2 ~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~ 81 (257)
T cd05040 2 KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPLGS 81 (257)
T ss_pred cCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecCCCc
Confidence 48999999999998642 3 3689999977644 35678899988 999999 2237789999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++..... ..++|.....++.|+++||+||| ..+++||||+
T Consensus 82 L~~~l~~~~~-~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~di~ 124 (257)
T cd05040 82 LLDRLRKDAL-GHFLISTLCDYAVQIANGMRYLE---SKRFIHRDLA 124 (257)
T ss_pred HHHHHHhccc-ccCcHHHHHHHHHHHHHHHHHHH---hCCccccccC
Confidence 888875332 45899999999999999999999 7899999985
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=124.03 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=89.5
Q ss_pred ccccceecccCCceEEEEEeCCCCEEEEEEecCCch-------hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 485 FHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET-------EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~-------~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
|.....||+|+||.||+|...+|+.+|||.+..... ....+.+|+.+ .++|+| ...+..++|+
T Consensus 2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~ 81 (265)
T cd06631 2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM 81 (265)
T ss_pred ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence 445567999999999999987899999998864321 12457778887 899999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.....++.|++.||+||| ..+|+||||+
T Consensus 82 e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~ 129 (265)
T cd06631 82 EFVPGGSISSILNRF---GPLPEPVFCKYTKQILDGVAYLH---NNCVVHRDIK 129 (265)
T ss_pred ecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcC
Confidence 999999 8888642 24788999999999999999999 7789999985
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-12 Score=128.15 Aligned_cols=114 Identities=24% Similarity=0.270 Sum_probs=90.4
Q ss_pred hhccccceecccCCceEEEEEeC--------CCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS--------SGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTD 541 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~--------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~ 541 (599)
++|...+.||+|+||.||++... ....+|+|.+..... ...++..|+.+ .+ +||| ...+
T Consensus 12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 91 (314)
T cd05099 12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEG 91 (314)
T ss_pred HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCC
Confidence 45666788999999999998731 245789999875432 24567888887 66 6999 4566
Q ss_pred Ccceeecccccc--cccccCCC-------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAPE-------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++| .+|+.... ....++|.+.+.++.||+.|++||| ..+|+||||+
T Consensus 92 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlk 161 (314)
T cd05099 92 PLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLA 161 (314)
T ss_pred ceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecccc
Confidence 789999999999 88886432 1245899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-12 Score=126.28 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=91.3
Q ss_pred hhccccceecccCCceEEEEEeCC-----------------CCEEEEEEecCCch--hhHHHHHHhhc--cccccC----
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSS-----------------GRVVALKKLHRSET--EELAFLETSST--DFRHYN---- 537 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~-----------------g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n---- 537 (599)
.+|.....||+|+||.||++...+ +..||+|.+..... ....|.+|+.+ +++|||
T Consensus 5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~ 84 (296)
T cd05051 5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARL 84 (296)
T ss_pred hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence 345566779999999999987532 24689999876532 25678889988 999999
Q ss_pred ----CCCCCcceeecccccc--cccccCCC--------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 ----SHTDNDDSSDEHLANN--EHFLSAPE--------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ----~~~~~~~lv~e~~~~G--~~~l~~~~--------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+..++|+||+++| .+++.... ....++|.+...++.|+++||+||| ..+|+||||+
T Consensus 85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH---~~~i~H~dlk 157 (296)
T cd05051 85 LGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE---SLNFVHRDLA 157 (296)
T ss_pred EEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCccccccc
Confidence 3557889999999999 77776432 1236899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-12 Score=125.97 Aligned_cols=112 Identities=17% Similarity=0.210 Sum_probs=88.1
Q ss_pred ccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
|...+.||+|+||.||+|... +++.||+|++...... ...|.+|+.+ .++||| ...+..+++
T Consensus 7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~ 86 (283)
T cd05091 7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMI 86 (283)
T ss_pred HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEE
Confidence 333456999999999999853 2478999999754332 3568888887 899999 455778999
Q ss_pred ecccccc--cccccCC-------------CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAP-------------ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~-------------~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||+++| .+++..+ .....++|..+..++.|+++||+||| ..+|+||||+
T Consensus 87 ~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH---~~gi~H~dlk 151 (283)
T cd05091 87 FSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLS---SHHVVHKDLA 151 (283)
T ss_pred EEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HcCccccccc
Confidence 9999988 7776421 11235889999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-12 Score=125.73 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=90.2
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
+|.....||+|+||.||+|.. .+++.||+|.++..... ...+.+|+.+ .++||| ...+..++|+||++
T Consensus 10 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~ 89 (267)
T cd06645 10 DFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCG 89 (267)
T ss_pred HHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccC
Confidence 455556699999999999985 46899999998765332 3457778877 899999 45678899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++... ..+++.+...++.|++.|++||| ..+|+||||+
T Consensus 90 ~~~L~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk 133 (267)
T cd06645 90 GGSLQDIYHVT---GPLSESQIAYVSRETLQGLYYLH---SKGKMHRDIK 133 (267)
T ss_pred CCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 99 7777632 34889999999999999999999 7799999985
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-12 Score=126.82 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=89.4
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|...+.||+|+||+||++.. ++|+.||+|.+...... ...+.+|+++ .++||| ...+..++||||+
T Consensus 6 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (284)
T cd06620 6 DLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFM 85 (284)
T ss_pred HHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecC
Confidence 344456699999999999985 46899999988654322 4678889888 899999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.. ...++|.....++.+++.||+|||+ ..+++||||+
T Consensus 86 ~~~~L~~~~~~---~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~ 131 (284)
T cd06620 86 DCGSLDRIYKK---GGPIPVEILGKIAVAVVEGLTYLYN--VHRIMHRDIK 131 (284)
T ss_pred CCCCHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHH--hcCeeccCCC
Confidence 999 666653 2358999999999999999999994 2479999985
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-12 Score=132.20 Aligned_cols=106 Identities=11% Similarity=0.084 Sum_probs=87.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
..|...+.||+|+||.||++.- .+++.||+|.... ..+.+|+.+ +++||| ......++|+||+.
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~-----~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~ 166 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR-----GGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK 166 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh-----hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC
Confidence 3577778899999999999984 5689999996532 346678888 999999 34567889999998
Q ss_pred cc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+. .+++..+ ..+++.+.+.|+.||++||+||| ..+|+|||||
T Consensus 167 ~~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~ylH---~~~IvHrDiK 209 (391)
T PHA03212 167 TDLYCYLAAK---RNIAICDILAIERSVLRAIQYLH---ENRIIHRDIK 209 (391)
T ss_pred CCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 66 7777643 34889999999999999999999 7799999996
|
|
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-13 Score=128.13 Aligned_cols=109 Identities=21% Similarity=0.162 Sum_probs=89.5
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
|.....||+|.||.||||.- ..++.||+|.+.....+ ..+..+|+.+ .++||| ..+..+|++||||.
T Consensus 15 ~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~ 94 (467)
T KOG0201|consen 15 YTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCG 94 (467)
T ss_pred cccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhc
Confidence 44446699999999999995 46889999999765433 4567778877 999999 67889999999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+.|... ..++.....-|..++..|+.||| ..+.+|||+|
T Consensus 95 gGsv~~lL~~~---~~~~E~~i~~ilre~l~~l~ylH---~~~kiHrDIK 138 (467)
T KOG0201|consen 95 GGSVLDLLKSG---NILDEFEIAVILREVLKGLDYLH---SEKKIHRDIK 138 (467)
T ss_pred CcchhhhhccC---CCCccceeeeehHHHHHHhhhhh---hcceeccccc
Confidence 99 8888742 23477778888999999999999 8999999986
|
|
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-12 Score=124.75 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=89.5
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
|.....||+|+||.||+|.. .+++.||+|.+..... ....|.+|+.. +++||| ..++..++||||++
T Consensus 6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 85 (277)
T cd06641 6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLG 85 (277)
T ss_pred hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCC
Confidence 44456799999999999985 4688999999865432 24567788887 999999 46677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++... .++|.+...++.|++.|+.||| ..+++||||+
T Consensus 86 ~~~l~~~i~~~----~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~ 128 (277)
T cd06641 86 GGSALDLLEPG----PLDETQIATILREILKGLDYLH---SEKKIHRDIK 128 (277)
T ss_pred CCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHc---cCCeecCCCC
Confidence 99 7777632 4899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-12 Score=123.78 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=85.1
Q ss_pred eecccCCceEEEEEeC-CCC--EEEEEEecCCc--hhhHHHHHHhhc--cc-cccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQLS-SGR--VVALKKLHRSE--TEELAFLETSST--DF-RHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~-~g~--~vavK~l~~~~--~~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.||+|+||.||+|... +|. .+|+|.+.... .....+.+|+.+ ++ +||| ...+..++||||+++|
T Consensus 2 ~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~ 81 (270)
T cd05047 2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHG 81 (270)
T ss_pred cCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCCC
Confidence 5899999999999974 344 46888887532 224568889887 78 8999 3556789999999999
Q ss_pred --cccccCCC-------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPE-------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++...+ ....++|.+...++.|++.|++||| ..+++||||+
T Consensus 82 ~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~i~H~dik 139 (270)
T cd05047 82 NLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLA 139 (270)
T ss_pred cHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccc
Confidence 77776422 1234789999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-12 Score=123.51 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=88.6
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCc------hhhHHHHHHhhc--cccccC----------CCCCCcc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE------TEELAFLETSST--DFRHYN----------SHTDNDD 544 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~------~~~~~f~~e~~~--~l~H~n----------~~~~~~~ 544 (599)
+|...+.+|+|+||.||+|.. .+|..||+|++.... .....+.+|+.+ .++||| ..++..+
T Consensus 3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 82 (266)
T cd06651 3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT 82 (266)
T ss_pred CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence 566678899999999999985 468999999885431 113457788887 999999 1235578
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|+||+++| .+++... ..+++.....++.|+++||+||| ..+|+||||+
T Consensus 83 l~~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~LH---~~~i~H~~l~ 133 (266)
T cd06651 83 IFMEYMPGGSVKDQLKAY---GALTESVTRKYTRQILEGMSYLH---SNMIVHRDIK 133 (266)
T ss_pred EEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCC
Confidence 999999999 7777642 24889999999999999999999 7899999985
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-12 Score=123.80 Aligned_cols=115 Identities=14% Similarity=0.203 Sum_probs=91.8
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC----------CCCCCcceeec
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN----------SHTDNDDSSDE 548 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n----------~~~~~~~lv~e 548 (599)
|...+.+|.|+||.||++.. .+|+.||+|.+.... .+...+..|+.+ .++||| ..+...++|||
T Consensus 2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e 81 (265)
T cd08217 2 YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVME 81 (265)
T ss_pred ceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEeh
Confidence 44456799999999999985 468899999986532 224567788887 999999 12345689999
Q ss_pred ccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCC--CccccccccC
Q 007553 549 HLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRK--YRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~--~~~i~Hrdl~ 599 (599)
|+++| .+++... .....++|.+.+.++.||++|++|||..+ ..+|+||||+
T Consensus 82 ~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~ 137 (265)
T cd08217 82 YCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLK 137 (265)
T ss_pred hccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCC
Confidence 99999 7777642 22456899999999999999999999766 8999999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-12 Score=126.55 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=91.1
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
+|.....||.|++|.||+|.- .+|+.||+|.+...... ...+.+|+++ .++||| ..++..++|+||++
T Consensus 20 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 99 (296)
T cd06655 20 KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLA 99 (296)
T ss_pred eEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecC
Confidence 466667899999999999984 57899999998654332 4567888887 999999 45678899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++... .++|.++..++.|+++|++||| +.+++||||+
T Consensus 100 ~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH---~~~i~H~dL~ 142 (296)
T cd06655 100 GGSLTDVVTET----CMDEAQIAAVCRECLQALEFLH---ANQVIHRDIK 142 (296)
T ss_pred CCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 99 6666532 3899999999999999999999 7899999986
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-13 Score=133.91 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=84.9
Q ss_pred cceecccCCceEEEEEe-CCCCEEE---EEEecCC--chhhHHHHHHhhc--cccccC----------CCCCCcceeecc
Q 007553 488 KYCIGTGGYGSVYRAQL-SSGRVVA---LKKLHRS--ETEELAFLETSST--DFRHYN----------SHTDNDDSSDEH 549 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~-~~g~~va---vK~l~~~--~~~~~~f~~e~~~--~l~H~n----------~~~~~~~lv~e~ 549 (599)
..+||+|.|-+||||.- .+|..|| ||.-+.. ..+...|..|+++ .|+||| ......-+|+|.
T Consensus 45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL 124 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL 124 (632)
T ss_pred hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence 45699999999999983 3576676 2221111 2223679999999 999999 344667899999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|..| ++|...++ .++.....++|.||.+||.|||+ ..|||||||||
T Consensus 125 ~TSGtLr~Y~kk~~---~vn~kaik~W~RQILkGL~yLHs-~~PPIIHRDLK 172 (632)
T KOG0584|consen 125 FTSGTLREYRKKHR---RVNIKAIKSWCRQILKGLVYLHS-QDPPIIHRDLK 172 (632)
T ss_pred ccCCcHHHHHHHhc---cCCHHHHHHHHHHHHHHhhhhhc-CCCCccccccc
Confidence 9999 99998543 37778899999999999999995 58999999997
|
|
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-12 Score=125.60 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=88.0
Q ss_pred cceecccCCceEEEEEeC-CCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--
Q 007553 488 KYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN-- 553 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G-- 553 (599)
...||+|+||.||+|... ++..+|+|.+..... ....|.+|+.+ .++||| ...+..++|+||+++|
T Consensus 10 ~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l 89 (282)
T cd06643 10 IGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV 89 (282)
T ss_pred HhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcH
Confidence 345999999999999964 578889999866443 34568888887 899999 4567789999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++... ..+++|.++..++.||++||+||| +.+|+||||+
T Consensus 90 ~~~~~~~--~~~l~~~~~~~~~~qi~~~L~~LH---~~~i~H~dlk 130 (282)
T cd06643 90 DAVMLEL--ERPLTEPQIRVVCKQTLEALNYLH---ENKIIHRDLK 130 (282)
T ss_pred HHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence 5666532 235899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-12 Score=125.63 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=90.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+.|...+.+|+|+||.||+|.. .++..||+|.+..... ....+.+|+.+ .++||| ...+..++|+||+
T Consensus 19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~ 98 (293)
T cd06647 19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYL 98 (293)
T ss_pred hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecC
Confidence 3455567799999999999984 4688999999865432 24567888877 999999 3567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++..+ .+++.++..++.|+++||+||| ..+++||||+
T Consensus 99 ~~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH---~~gi~H~dL~ 142 (293)
T cd06647 99 AGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIK 142 (293)
T ss_pred CCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHH---hCCEeeccCC
Confidence 999 7787643 3789999999999999999999 8899999985
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-12 Score=123.17 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=91.0
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
|...+.||.|+||.||+|... +++.||+|.+.... .....+.+|+.+ +++||| ..++..++|+||
T Consensus 2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 81 (258)
T cd05578 2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDL 81 (258)
T ss_pred ceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeC
Confidence 455678999999999999964 58999999986532 224578888887 999999 456778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++... ..+++.+...++.|+++||+||| ..+++||||+
T Consensus 82 ~~~~~L~~~l~~~---~~l~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~ 127 (258)
T cd05578 82 LLGGDLRYHLSQK---VKFSEEQVKFWICEIVLALEYLH---SKGIIHRDIK 127 (258)
T ss_pred CCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence 9999 7777643 35889999999999999999999 7799999985
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-12 Score=125.10 Aligned_cols=104 Identities=20% Similarity=0.172 Sum_probs=81.7
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc-----cccccC--------CCCCCcceeecccc
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST-----DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~-----~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
.||+|+||.||++.. .+|+.+|+|.+..... ....+.+|..+ ..+||+ ...+..++||||++
T Consensus 1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~ 80 (279)
T cd05633 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN 80 (279)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence 389999999999985 4689999998865321 12234445433 347888 35677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++..+ ..++|.+...++.|+++|++||| ..+|+||||+
T Consensus 81 ~~~L~~~i~~~---~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dik 124 (279)
T cd05633 81 GGDLHYHLSQH---GVFSEKEMRFYATEIILGLEHMH---NRFVVYRDLK 124 (279)
T ss_pred CCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcCCCCCC
Confidence 99 7777642 34899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-12 Score=126.86 Aligned_cols=113 Identities=22% Similarity=0.171 Sum_probs=88.1
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh---hHHHHHHhhc--cc-cccC--------CCCC-----Cc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE---ELAFLETSST--DF-RHYN--------SHTD-----ND 543 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~---~~~f~~e~~~--~l-~H~n--------~~~~-----~~ 543 (599)
+|...+.||+|+||.||+|... +|+.||+|.+...... ...+.+|+.+ .+ +||| ...+ ..
T Consensus 2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~ 81 (295)
T cd07837 2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSL 81 (295)
T ss_pred CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceE
Confidence 4566778999999999999964 6899999987654322 3567788887 77 4588 1122 26
Q ss_pred ceeecccccc-cccccCCC--CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN-EHFLSAPE--NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G-~~~l~~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||++++ .+++.... ....+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~ 137 (295)
T cd07837 82 YLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCH---KHGVMHRDLK 137 (295)
T ss_pred EEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence 8999999988 77776422 1346899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=123.06 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=91.6
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|...+.||+|+||.||++.. .+++.+|||++.... .+...+.+|+.+ +++||| ..++..++||||+
T Consensus 2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~ 81 (256)
T cd08220 2 YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYA 81 (256)
T ss_pred ceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecC
Confidence 45567899999999999885 468899999986542 224568888888 999999 3567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.... ...+++....+++.|+++||+||| ..+|+||||+
T Consensus 82 ~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~ 128 (256)
T cd08220 82 PGGTLAEYIQKRC-NSLLDEDTILHFFVQILLALHHVH---TKLILHRDLK 128 (256)
T ss_pred CCCCHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 999 88887532 345899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-12 Score=123.83 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=88.8
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCC-c--hhhHHHHHHhhc--cccccC-------------CCCCCcce
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRS-E--TEELAFLETSST--DFRHYN-------------SHTDNDDS 545 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~-~--~~~~~f~~e~~~--~l~H~n-------------~~~~~~~l 545 (599)
|.....||+|.||.|+++.- ++|+.||||++... . ...+.-.+|+++ .++|+| ..-+..|+
T Consensus 24 y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYi 103 (359)
T KOG0660|consen 24 YVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYL 103 (359)
T ss_pred ecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEE
Confidence 33345699999999999984 57999999998632 2 224667889998 999999 24566799
Q ss_pred eecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+|+|+.. ++.++. +..|+-....-+.-|+.+|+.|+| +..|+|||||
T Consensus 104 V~elMetDL~~iik~---~~~L~d~H~q~f~YQiLrgLKyiH---SAnViHRDLK 152 (359)
T KOG0660|consen 104 VFELMETDLHQIIKS---QQDLTDDHAQYFLYQILRGLKYIH---SANVIHRDLK 152 (359)
T ss_pred ehhHHhhHHHHHHHc---CccccHHHHHHHHHHHHHhcchhh---cccccccccc
Confidence 99999888 888874 334788888889999999999999 9999999997
|
|
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-12 Score=126.28 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=86.8
Q ss_pred eecccCCceEEEEEeCC-------CCEEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 490 CIGTGGYGSVYRAQLSS-------GRVVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~-------g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
.||+|+||.||+|...+ ++.+|+|.+.... ....+|.+|+.+ .++||| ...+..++||||+
T Consensus 2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~ 81 (269)
T cd05044 2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELM 81 (269)
T ss_pred ccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEecc
Confidence 58999999999998632 2578999886543 234678888887 999999 4556789999999
Q ss_pred ccc--cccccCCC----CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPE----NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~----~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .++++... ....++|.+++.++.|++.|++||| ..+++||||+
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~ 133 (269)
T cd05044 82 EGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLE---QMHFIHRDLA 133 (269)
T ss_pred CCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 999 88886422 2245799999999999999999999 7889999986
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-12 Score=128.01 Aligned_cols=113 Identities=22% Similarity=0.235 Sum_probs=89.2
Q ss_pred hccccceecccCCceEEEEEeC--------CCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCCC
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS--------SGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTDN 542 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~--------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~~ 542 (599)
+|.....||+|+||.||++... .+..||+|.+..... ...++.+|+.+ ++ +||| ...+.
T Consensus 13 ~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 92 (334)
T cd05100 13 RLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP 92 (334)
T ss_pred HeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCc
Confidence 3555677999999999999741 123689998875332 24578889888 77 8999 45667
Q ss_pred cceeecccccc--cccccCCC-------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPE-------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++|+||+++| .+++..+. ....++|.+++.++.||+.||+||| ..+|+||||+
T Consensus 93 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~givH~dlk 161 (334)
T cd05100 93 LYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA---SQKCIHRDLA 161 (334)
T ss_pred eEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccc
Confidence 89999999999 88886422 1245899999999999999999999 7899999986
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-12 Score=123.71 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=88.1
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCc------hhhHHHHHHhhc--cccccC--------CC--CCCcc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE------TEELAFLETSST--DFRHYN--------SH--TDNDD 544 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~------~~~~~f~~e~~~--~l~H~n--------~~--~~~~~ 544 (599)
+|...+.||+|+||.||+|.. .+|..||+|.+.... .+...+.+|+.+ +++||| .. ....+
T Consensus 3 ~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 82 (265)
T cd06652 3 NWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLS 82 (265)
T ss_pred cceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEE
Confidence 566678899999999999985 468999999885321 113467778887 999999 11 24567
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++... ..+++...++++.|++.||+||| +.+|+||||+
T Consensus 83 ~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~ 133 (265)
T cd06652 83 IFMEHMPGGSIKDQLKSY---GALTENVTRKYTRQILEGVSYLH---SNMIVHRDIK 133 (265)
T ss_pred EEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCC
Confidence 999999999 7788642 24788889999999999999999 7889999985
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-12 Score=130.14 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=87.5
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
..+|.....||+|+||.||+|... +++.||+|...... ...|+.+ +++||| ..++..++|+||+
T Consensus 65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~-----~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 139 (357)
T PHA03209 65 SLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGT-----TLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHY 139 (357)
T ss_pred hcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccc-----cHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEcc
Confidence 346777888999999999999964 56789999754322 2346666 999999 4566788999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+. .+++..+ ...++|.++..|+.||+.||+||| ..+|+||||+
T Consensus 140 ~~~l~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlk 184 (357)
T PHA03209 140 SSDLYTYLTKR--SRPLPIDQALIIEKQILEGLRYLH---AQRIIHRDVK 184 (357)
T ss_pred CCcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 877 7787643 345899999999999999999999 7899999996
|
|
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-12 Score=122.79 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=91.0
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|...+.+|+|+||.||+|... +|..||+|.+.... .+...+.+|+.+ .++||| ...+..++|+||+
T Consensus 2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~ 81 (257)
T cd08225 2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYC 81 (257)
T ss_pred ceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecC
Confidence 445677999999999999964 58899999986532 234567788887 899999 4566789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.... ...++|..+..++.|+++||+||| ..+++||||+
T Consensus 82 ~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~ 128 (257)
T cd08225 82 DGGDLMKRINRQR-GVLFSEDQILSWFVQISLGLKHIH---DRKILHRDIK 128 (257)
T ss_pred CCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCC
Confidence 999 77776432 335799999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-12 Score=122.60 Aligned_cols=111 Identities=10% Similarity=0.006 Sum_probs=91.3
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|...+.||.|+||.||.+.. .+++.+++|.+.... ....++.+|+.+ +++||| ...+..++||||+
T Consensus 2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~ 81 (256)
T cd08221 2 YIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYA 81 (256)
T ss_pred ceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEec
Confidence 44567899999999998874 568999999986542 224678889888 999999 5677789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.... ...+++.++..++.|+++||+||| ..+++||||+
T Consensus 82 ~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~ 128 (256)
T cd08221 82 NGGTLYDKIVRQK-GQLFEEEMVLWYLFQIVSAVSYIH---KAGILHRDIK 128 (256)
T ss_pred CCCcHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCC
Confidence 999 87887532 345899999999999999999999 6789999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=124.30 Aligned_cols=109 Identities=22% Similarity=0.217 Sum_probs=87.9
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-----------hHHHHHHhhc--cccccC--------CCCCC
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-----------ELAFLETSST--DFRHYN--------SHTDN 542 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-----------~~~f~~e~~~--~l~H~n--------~~~~~ 542 (599)
|...+.||+|+||.||+|.. .+|+.||+|.++..... ...+.+|+.+ .++||| ...+.
T Consensus 3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~ 82 (272)
T cd06629 3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY 82 (272)
T ss_pred eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence 34456799999999999984 46899999988542110 1346778777 999999 45677
Q ss_pred cceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+++| .++++.. ..+++..+..++.||+.|+.||| ..+++||||+
T Consensus 83 ~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~ 135 (272)
T cd06629 83 LSIFLEYVPGGSIGSCLRTY---GRFEEQLVRFFTEQVLEGLAYLH---SKGILHRDLK 135 (272)
T ss_pred eEEEEecCCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHh---hCCeeecCCC
Confidence 89999999999 7778743 35899999999999999999999 6799999985
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-12 Score=123.85 Aligned_cols=110 Identities=23% Similarity=0.269 Sum_probs=85.8
Q ss_pred ccceecccCCceEEEEEeC-C---CCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCC------Cc
Q 007553 487 IKYCIGTGGYGSVYRAQLS-S---GRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTD------ND 543 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~~-~---g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~------~~ 543 (599)
..+.||+|+||.||+|... + +..||||++.... .+..++.+|++. .++||| ...+ ..
T Consensus 3 ~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 82 (273)
T cd05035 3 LGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKP 82 (273)
T ss_pred cccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCccc
Confidence 3466999999999999863 2 3679999987542 223568888887 899999 1222 36
Q ss_pred ceeecccccc--cccccCCC---CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPE---NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~---~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|+||+++| .+++.... ....+++.+...++.|++.||+||| ..+|+||||+
T Consensus 83 ~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH---~~~i~H~dlk 140 (273)
T cd05035 83 MVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLS---NRNFIHRDLA 140 (273)
T ss_pred EEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccc
Confidence 8999999999 66764321 2245899999999999999999999 7899999996
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-12 Score=122.31 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=89.1
Q ss_pred eecccCCceEEEEEeCCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--cc
Q 007553 490 CIGTGGYGSVYRAQLSSGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--EH 555 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~~ 555 (599)
.||+|+||.||++...+++.||+|.+..... ....|.+|+.+ .++||| ......++||||+++| .+
T Consensus 2 ~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~ 81 (251)
T cd05041 2 KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLT 81 (251)
T ss_pred ccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHHH
Confidence 4899999999999976699999999876433 34578889887 899999 5667789999999999 88
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 556 FLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 556 ~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++.... ..+++...+.++.+++.|++||| ..+++||||+
T Consensus 82 ~l~~~~--~~~~~~~~~~~~~~~~~~l~~lH---~~~i~h~di~ 120 (251)
T cd05041 82 FLRKKK--NRLTVKKLLQMSLDAAAGMEYLE---SKNCIHRDLA 120 (251)
T ss_pred HHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCEehhhcC
Confidence 886532 34789999999999999999999 7799999985
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-12 Score=126.65 Aligned_cols=112 Identities=22% Similarity=0.239 Sum_probs=90.1
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCC--CCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHT--DNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~--~~~~lv 546 (599)
++|...+.||+|+||.||+|... +++.+|+|.++..... ...+.+|+.+ +++||| ... +..++|
T Consensus 5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv 84 (293)
T cd07843 5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV 84 (293)
T ss_pred hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence 35666677999999999999974 6899999999754322 2356778877 999999 223 788999
Q ss_pred ecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++. .+++..+. ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 85 ~e~~~~~L~~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~ 133 (293)
T cd07843 85 MEYVEHDLKSLMETMK--QPFLQSEVKCLMLQLLSGVAHLH---DNWILHRDLK 133 (293)
T ss_pred ehhcCcCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCC
Confidence 9999976 77776432 25899999999999999999999 7789999985
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-12 Score=126.64 Aligned_cols=106 Identities=23% Similarity=0.283 Sum_probs=88.0
Q ss_pred cceecccCCceEEEEEeC-CCCEEEEEEecCCchhh---HHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 488 KYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEE---LAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~---~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.+.||+|+||.||++... +++.+|+|.+....... ....+|+.+ +++||| ...+..++||||+++|
T Consensus 4 ~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 83 (260)
T PF00069_consen 4 VKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCPGG 83 (260)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEETTE
T ss_pred eEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccccccc
Confidence 467999999999999964 56789999998775442 233457777 889999 4577788999999998
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.. ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 84 ~L~~~l~~---~~~~~~~~~~~~~~qi~~~L~~Lh---~~~i~H~dik 125 (260)
T PF00069_consen 84 SLQDYLQK---NKPLSEEEILKIAYQILEALAYLH---SKGIVHRDIK 125 (260)
T ss_dssp BHHHHHHH---HSSBBHHHHHHHHHHHHHHHHHHH---HTTEEESSBS
T ss_pred cccccccc---cccccccccccccccccccccccc---cccccccccc
Confidence 888872 234899999999999999999999 6799999986
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.7e-12 Score=124.85 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=85.0
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc-----cccccC----C---------CCCC
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST-----DFRHYN----S---------HTDN 542 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~-----~l~H~n----~---------~~~~ 542 (599)
|.....||+|+||.||+|.. .+|+.||+|.+...... ...+.+|+.+ .++||| . ....
T Consensus 2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~ 81 (288)
T cd07863 2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETK 81 (288)
T ss_pred ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCce
Confidence 44456799999999999985 46899999998653221 2345566655 457999 1 1234
Q ss_pred cceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||++++ .+++.... ...+++.+...++.||+.||+||| ..+|+||||+
T Consensus 82 ~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dik 135 (288)
T cd07863 82 VTLVFEHVDQDLRTYLDKVP-PPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLK 135 (288)
T ss_pred EEEEEcccccCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 68999999987 77776432 234899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-12 Score=125.37 Aligned_cols=110 Identities=23% Similarity=0.214 Sum_probs=91.1
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|.....||+|++|.||++... +++.||+|.+.... .....+.+|+++ +++||| ..++..++|||
T Consensus 2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 81 (290)
T cd05580 2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVME 81 (290)
T ss_pred ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEe
Confidence 4556678999999999999864 68999999986532 123567888887 899999 46677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .++++.. ..+++..+..++.|++.||.||| ..+|+||||+
T Consensus 82 ~~~~~~L~~~~~~~---~~l~~~~~~~~~~qil~~l~~lH---~~~i~H~dl~ 128 (290)
T cd05580 82 YVPGGELFSHLRKS---GRFPEPVARFYAAQVVLALEYLH---SLDIVYRDLK 128 (290)
T ss_pred cCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCC
Confidence 99999 7888743 35889999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-12 Score=125.19 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=89.9
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
|.....||.|+||.||+|... +++.||+|.+...... ...+.+|+.+ .++||| ......++||||+++
T Consensus 14 y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 93 (292)
T cd06644 14 WEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPG 93 (292)
T ss_pred hhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCC
Confidence 444566999999999999964 5899999998765433 4668888887 999999 345678999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| ..++.... ..++|.++..++.|+++|++||| ..+|+||||+
T Consensus 94 ~~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlk 137 (292)
T cd06644 94 GAVDAIMLELD--RGLTEPQIQVICRQMLEALQYLH---SMKIIHRDLK 137 (292)
T ss_pred CcHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHh---cCCeeecCCC
Confidence 9 55555322 34899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-12 Score=123.33 Aligned_cols=113 Identities=17% Similarity=0.151 Sum_probs=93.6
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|...+.+|.|+||.||+|.. .++..+|+|++.... .....+.+|++. .++||| ...+..++|+||+
T Consensus 2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~ 81 (267)
T cd06610 2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYL 81 (267)
T ss_pred cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEecc
Confidence 456677899999999999995 468899999986532 234678888887 899999 4677889999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .++++.......++|.+...++.|++.||+||| ..+|+||||+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh---~~~i~h~~l~ 129 (267)
T cd06610 82 SGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLH---SNGQIHRDIK 129 (267)
T ss_pred CCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 999 888875433345899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.9e-12 Score=122.33 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=90.3
Q ss_pred cccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 486 HIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 486 ~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
...+.||+|+||.||+|... +++.||+|.+..... ....+.+|+.+ .++||| ...+..++|+||++
T Consensus 3 ~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~ 82 (264)
T cd06626 3 QRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCS 82 (264)
T ss_pred eeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCC
Confidence 34567999999999999864 689999999876543 35678888888 999999 45677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++..+ ..+++.....|+.|+++||+||| ..+|+||||+
T Consensus 83 ~~~L~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~ 126 (264)
T cd06626 83 GGTLEELLEHG---RILDEHVIRVYTLQLLEGLAYLH---SHGIVHRDIK 126 (264)
T ss_pred CCcHHHHHhhc---CCCChHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 99 8887742 24788999999999999999999 7899999985
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-12 Score=116.10 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=77.3
Q ss_pred ceecccCCceEEEEEeCCCCEEEEEEecCCchh---------------------------hHHHHHHhhc--cccccC--
Q 007553 489 YCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE---------------------------ELAFLETSST--DFRHYN-- 537 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~---------------------------~~~f~~e~~~--~l~H~n-- 537 (599)
..||+|++|.||+|...+|+.||||.++..... ...+..|... +++|++
T Consensus 3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~ 82 (190)
T cd05145 3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVP 82 (190)
T ss_pred ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 459999999999999778999999998764211 0112345554 777776
Q ss_pred ----CCCCCcceeecccccc-c--ccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCC-ccccccccC
Q 007553 538 ----SHTDNDDSSDEHLANN-E--HFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKY-RKSYYQRLY 599 (599)
Q Consensus 538 ----~~~~~~~lv~e~~~~G-~--~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~-~~i~Hrdl~ 599 (599)
......++||||++++ . ..+.. ..++..+..+++.|++.|+.|+| . .+|+||||+
T Consensus 83 ~p~~~~~~~~~lVmE~~~g~~~~~~~l~~----~~~~~~~~~~i~~~l~~~l~~lH---~~~givHrDlk 145 (190)
T cd05145 83 VPEPILLKKNVLVMEFIGDDGSPAPRLKD----VPLEEEEAEELYEQVVEQMRRLY---QEAGLVHGDLS 145 (190)
T ss_pred CceEEEecCCEEEEEEecCCCchhhhhhh----ccCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCC
Confidence 1122348999999988 2 22332 23677889999999999999999 6 899999996
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.7e-12 Score=127.02 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=87.4
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC-------C-------CCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN-------S-------HTD 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n-------~-------~~~ 541 (599)
.+.|.....||+|+||.||+|.. .+++.||||++..... ....+.+|+.+ .++||| . ...
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 93 (343)
T cd07878 14 PERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFN 93 (343)
T ss_pred hhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccC
Confidence 45666677899999999999984 5688999999875422 23557788888 999999 1 113
Q ss_pred Ccceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++++||+.+. .+++.. ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 94 ~~~~~~~~~~~~l~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrdik 145 (343)
T cd07878 94 EVYLVTNLMGADLNNIVKC----QKLSDEHVQFLIYQLLRGLKYIH---SAGIIHRDLK 145 (343)
T ss_pred cEEEEeecCCCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCC
Confidence 468999998444 666653 24899999999999999999999 7899999996
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-12 Score=122.14 Aligned_cols=111 Identities=11% Similarity=0.076 Sum_probs=89.6
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
|...+.||+|+||.||++.. .+++.+|+|.+.... .....+.+|+.+ .++||| ...+..++||||++
T Consensus 2 y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 81 (255)
T cd08219 2 YNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCD 81 (255)
T ss_pred ceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCC
Confidence 44457799999999999985 468899999986432 234567778777 899999 46677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.... ...+++...+.++.||++||.||| ..+|+|+||+
T Consensus 82 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dl~ 127 (255)
T cd08219 82 GGDLMQKIKLQR-GKLFPEDTILQWFVQMCLGVQHIH---EKRVLHRDIK 127 (255)
T ss_pred CCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCC
Confidence 99 67775422 334788999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-12 Score=123.11 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=91.0
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch------hhHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET------EELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~------~~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
++|...+.||+|++|.||+|.. .+++.||+|.+..... +...+.+|+.+ +++||| ...+..++
T Consensus 2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~ 81 (263)
T cd06625 2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI 81 (263)
T ss_pred CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence 3577778899999999999985 4689999998864321 12457788887 999999 45678899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+||+++| .+++... ..+++.....++.|++.||+||| ..+|+||||+
T Consensus 82 v~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~ 131 (263)
T cd06625 82 FMEYMPGGSVKDQLKAY---GALTETVTRKYTRQILEGVEYLH---SNMIVHRDIK 131 (263)
T ss_pred EEEECCCCcHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 99999999 7777642 34788899999999999999999 7899999985
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-12 Score=123.88 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=85.6
Q ss_pred ecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--
Q 007553 491 IGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN-- 553 (599)
Q Consensus 491 lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G-- 553 (599)
||+|+||.||++.. .+|+.||+|.+..... ....+..|+++ .++||| ...+..++||||+++|
T Consensus 1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L 80 (277)
T cd05577 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL 80 (277)
T ss_pred CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence 68999999999985 4689999999865321 23456778887 999999 3567789999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... ...+++.++..++.|+++|+.||| ..+++||||+
T Consensus 81 ~~~l~~~~-~~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~ 122 (277)
T cd05577 81 KYHIYNVG-EPGFPEARAIFYAAQIICGLEHLH---QRRIVYRDLK 122 (277)
T ss_pred HHHHHHcC-cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 77776432 235899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-12 Score=125.31 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=95.4
Q ss_pred HhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
+++.|.....+|+|++|.||+|... ++..||+|.+.........+.+|+++ .++||| ...+..++|+||
T Consensus 17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~ 96 (286)
T cd06614 17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEY 96 (286)
T ss_pred ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEec
Confidence 3444555667999999999999975 68899999997655445668888887 999999 456788999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++..+. ..+++.++..++.|++.||+||| ..+|+|+||+
T Consensus 97 ~~~~~L~~~l~~~~--~~l~~~~~~~i~~~i~~~L~~lH---~~gi~H~dl~ 143 (286)
T cd06614 97 MDGGSLTDIITQNF--VRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIK 143 (286)
T ss_pred cCCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCC
Confidence 9988 88888543 35899999999999999999999 7999999985
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-12 Score=124.63 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=90.8
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC----------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET--EELAFLETSST--DFRHYN----------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n----------~~~~~~~lv~e 548 (599)
+|...+.||.|++|.||++.. .+++.+|+|.+..... ...++.+|+++ .++||| ...+..++|||
T Consensus 2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e 81 (287)
T cd06621 2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAME 81 (287)
T ss_pred ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEE
Confidence 466677899999999999996 4688999999875432 24678889888 999999 12345789999
Q ss_pred ccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... .....+++.....|+.||+.||+||| ..+++||||+
T Consensus 82 ~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH---~~~i~H~dl~ 132 (287)
T cd06621 82 YCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH---SRKIIHRDIK 132 (287)
T ss_pred ecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 99999 7776531 12345788899999999999999999 7899999985
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-12 Score=133.22 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=86.8
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
.|.....||+|+||.||+|... .++.||||.... ..+.+|+.+ +++||| ..++..++||||+.+
T Consensus 170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~-----~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~~ 244 (461)
T PHA03211 170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY-----ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYRS 244 (461)
T ss_pred CeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc-----cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccCC
Confidence 4666778999999999999964 578999996432 235678887 999999 356678999999976
Q ss_pred c-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
. .+++..+. ..++|.+++.|+.||++||+||| ..+|+|||||
T Consensus 245 ~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDLK 287 (461)
T PHA03211 245 DLYTYLGARL--RPLGLAQVTAVARQLLSAIDYIH---GEGIIHRDIK 287 (461)
T ss_pred CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCEEECcCC
Confidence 6 77776432 35999999999999999999999 7899999997
|
|
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-12 Score=125.88 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=90.5
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.+|+|+||.||++.. ..++.||+|.+..... ....+.+|+.+ .++||| ..++..++|||
T Consensus 2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e 81 (305)
T cd05609 2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVME 81 (305)
T ss_pred CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEe
Confidence 466677899999999999985 4578999999876432 23467788887 899999 45667899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ..++|.....++.|+++||+||| ..+++||||+
T Consensus 82 ~~~g~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~ 128 (305)
T cd05609 82 YVEGGDCATLLKNI---GALPVDMARMYFAETVLALEYLH---NYGIVHRDLK 128 (305)
T ss_pred cCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCc
Confidence 99999 8888642 34899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.30 E-value=5e-12 Score=125.12 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=86.1
Q ss_pred ceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccccc--c
Q 007553 489 YCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--E 554 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~ 554 (599)
..||+|+||.||++.. .+++.||+|.+...... ...+.+|+.. .++||| ..++..++|+||+++| .
T Consensus 27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~ 106 (297)
T cd06659 27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALT 106 (297)
T ss_pred hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHH
Confidence 3489999999999985 46899999998654322 4567788877 899999 4567889999999999 6
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 555 HFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 555 ~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++.. ..+++.+...++.|++.||+||| ..+|+||||+
T Consensus 107 ~~~~~----~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dl~ 144 (297)
T cd06659 107 DIVSQ----TRLNEEQIATVCESVLQALCYLH---SQGVIHRDIK 144 (297)
T ss_pred HHHhh----cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 66553 23899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-12 Score=126.29 Aligned_cols=110 Identities=20% Similarity=0.209 Sum_probs=89.6
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
|...+.+|+|+||.||+|.. .+|+.||+|.+..... ...++.+|+++ .++||| ...+..++|+||
T Consensus 17 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 96 (307)
T cd06607 17 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEY 96 (307)
T ss_pred hhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHh
Confidence 55567799999999999986 4689999999864321 23568889887 899999 456778999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++ .+++..+. ..++|.++..++.||+.||.||| ..+|+||||+
T Consensus 97 ~~g~l~~~~~~~~--~~l~~~~~~~~~~ql~~~L~~LH---~~~i~H~dl~ 142 (307)
T cd06607 97 CLGSASDILEVHK--KPLQEVEIAAICHGALQGLAYLH---SHERIHRDIK 142 (307)
T ss_pred hCCCHHHHHHHcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCC
Confidence 9977 66665332 34899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.4e-12 Score=125.77 Aligned_cols=113 Identities=27% Similarity=0.287 Sum_probs=90.7
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC----------CCCCCcce
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN----------SHTDNDDS 545 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n----------~~~~~~~l 545 (599)
.++|...+.||+|+||.||+|.. .+|+.||+|.+...... ...+.+|+.+ +++||| ...+..++
T Consensus 6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 85 (309)
T cd07845 6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL 85 (309)
T ss_pred ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence 35677778899999999999996 46899999998654321 2346678887 999999 12245799
Q ss_pred eecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||++++ .+++.... ..++|.+...++.||++|++||| ..+++||||+
T Consensus 86 v~e~~~~~l~~~l~~~~--~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~ 135 (309)
T cd07845 86 VMEYCEQDLASLLDNMP--TPFSESQVKCLMLQLLRGLQYLH---ENFIIHRDLK 135 (309)
T ss_pred EEecCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 99999977 77776422 45899999999999999999999 7889999985
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-12 Score=121.55 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=93.3
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|...+.||+|++|.||+|... +|+.||||++..... ....+.+|+.. +++||| ...+..++|+||+
T Consensus 2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~ 81 (264)
T cd06623 2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYM 81 (264)
T ss_pred cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEec
Confidence 4556678999999999999965 589999999876543 35678889887 899999 4667889999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCC-ccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKY-RKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~-~~i~Hrdl~ 599 (599)
++| .+++... ..+++.....++.|+++|++||| . .+++||||+
T Consensus 82 ~~~~L~~~l~~~---~~l~~~~~~~~~~~l~~~l~~lh---~~~~~~H~~l~ 127 (264)
T cd06623 82 DGGSLADLLKKV---GKIPEPVLAYIARQILKGLDYLH---TKRHIIHRDIK 127 (264)
T ss_pred CCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHh---ccCCCccCCCC
Confidence 999 8888743 45899999999999999999999 7 999999985
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.8e-12 Score=125.95 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=88.7
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
|...+.||+|+||.||+|.. .+|+.||+|.+..... ....+.+|+.+ .++||| ...+..++||||
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 106 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY 106 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence 44456799999999999985 4689999999864321 13468888887 899999 456778999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++. .+++..+ ...++|.++..++.||+.||.||| ..+|+||||+
T Consensus 107 ~~g~l~~~~~~~--~~~l~~~~~~~i~~~i~~~l~~lH---~~~i~H~dL~ 152 (317)
T cd06635 107 CLGSASDLLEVH--KKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIK 152 (317)
T ss_pred CCCCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 9866 6666532 234899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-12 Score=126.63 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=89.6
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC------------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN------------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n------------~~~~~~~ 544 (599)
.+|...+.||+|++|.||+|.. .+|+.||+|++..... ....+.+|+.+ .++||| ......+
T Consensus 5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 84 (334)
T cd07855 5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY 84 (334)
T ss_pred hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence 5677677899999999999985 4699999999875422 23456778887 999999 1334578
Q ss_pred eeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|+||+++. .+++... ..+++.....++.||++||+||| ..+|+||||+
T Consensus 85 lv~e~~~~~l~~~~~~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlk 134 (334)
T cd07855 85 VVMDLMESDLHHIIHSD---QPLTEEHIRYFLYQLLRGLKYIH---SANVIHRDLK 134 (334)
T ss_pred EEEehhhhhHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 999999866 7777632 34899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.2e-12 Score=126.87 Aligned_cols=110 Identities=20% Similarity=0.200 Sum_probs=88.6
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC----C---------CCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET--EELAFLETSST--DFRHYN----S---------HTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n----~---------~~~~~~ 544 (599)
++|...+.||+|+||.||+|.. .+|+.||||.+..... ....+.+|+.+ +++||| . .....+
T Consensus 5 ~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 84 (336)
T cd07849 5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVY 84 (336)
T ss_pred cceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEE
Confidence 4677778899999999999984 5789999999864322 23567788887 899999 0 113468
Q ss_pred eeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|+||+++. .+++..+ .+++.....++.||++||+||| ..+|+||||+
T Consensus 85 lv~e~~~~~l~~~~~~~----~l~~~~~~~i~~ql~~aL~~LH---~~~ivH~dlk 133 (336)
T cd07849 85 IVQELMETDLYKLIKTQ----HLSNDHIQYFLYQILRGLKYIH---SANVLHRDLK 133 (336)
T ss_pred EEehhcccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence 999999877 6666532 4899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.1e-12 Score=125.36 Aligned_cols=112 Identities=17% Similarity=0.144 Sum_probs=92.0
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+|...+.||+|++|.||+|... +++.||+|.+..... ....+.+|+++ .++||| ..++..++|||
T Consensus 2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e 81 (316)
T cd05574 2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD 81 (316)
T ss_pred ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence 4666678999999999999964 589999999875432 23567788887 899999 45667899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ....+++.....++.||++||+||| ..+++||||+
T Consensus 82 ~~~~~~L~~~~~~~-~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk 130 (316)
T cd05574 82 YCPGGELFRLLQRQ-PGKCLSEEVARFYAAEVLLALEYLH---LLGIVYRDLK 130 (316)
T ss_pred ecCCCCHHHHHHhC-CCCccCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 99999 7777642 2346899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-12 Score=123.53 Aligned_cols=109 Identities=21% Similarity=0.155 Sum_probs=89.6
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|...+.||+|++|.||+|.. .+|+.||||++..... ....+.+|+.+ +++||| ..++..++|+||+
T Consensus 2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~ 81 (286)
T cd07832 2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM 81 (286)
T ss_pred ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc
Confidence 34456799999999999996 4689999999876432 24568888887 899999 3567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 82 -~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~ 126 (286)
T cd07832 82 -PSDLSEVLRDEE--RPLPEAQVKSYMRMLLKGVAYMH---ANGIMHRDLK 126 (286)
T ss_pred -CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcC
Confidence 67 77776432 45899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-12 Score=126.51 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=90.1
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--ccc-ccC--------CCCCCcceeec
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFR-HYN--------SHTDNDDSSDE 548 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~-H~n--------~~~~~~~lv~e 548 (599)
|.....+|+|.||.||+++-. +|+.+|+|.+..... ......+|+.+ .+. ||| ...+..++|||
T Consensus 37 Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmE 116 (382)
T KOG0032|consen 37 YELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVME 116 (382)
T ss_pred EEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEE
Confidence 344467999999999999965 499999999966432 13578889998 887 999 56778999999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++.+| .+.+... .++..+...++.||+.|+.||| ..+|+|||||
T Consensus 117 L~~GGeLfd~i~~~----~~sE~da~~~~~~il~av~~lH---~~gvvHrDlK 162 (382)
T KOG0032|consen 117 LCEGGELFDRIVKK----HYSERDAAGIIRQILEAVKYLH---SLGVVHRDLK 162 (382)
T ss_pred ecCCchHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHH---hCCceeccCC
Confidence 99999 6666643 2888999999999999999999 7999999996
|
|
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-12 Score=121.78 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=86.1
Q ss_pred ecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--
Q 007553 491 IGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN-- 553 (599)
Q Consensus 491 lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G-- 553 (599)
+|.|+||.||++... +|+.+|+|.+..... ....+.+|+.+ +++||| ..++..++|+||+++|
T Consensus 1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 80 (265)
T cd05579 1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL 80 (265)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence 589999999999975 489999999865432 23567778777 899999 4567789999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... .+++..+..++.||++||+||| ..+++||||.
T Consensus 81 ~~~l~~~~---~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~di~ 120 (265)
T cd05579 81 ASLLENVG---SLDEDVARIYIAEIVLALEYLH---SNGIIHRDLK 120 (265)
T ss_pred HHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HcCeecCCCC
Confidence 77777422 5899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.29 E-value=8e-12 Score=120.92 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=88.4
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC-------C--CCCCcceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN-------S--HTDNDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n-------~--~~~~~~lv~e~ 549 (599)
|...+.+|+|++|.||++.. .+++.||+|++.... .....+.+|+++ +++||| . .....++||||
T Consensus 2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~ 81 (257)
T cd08223 2 YCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGF 81 (257)
T ss_pred ceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecc
Confidence 44456799999999999985 457899999986532 223567778877 899999 1 23346899999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++.... ...+++.++..++.|++.|++||| ..+|+||||+
T Consensus 82 ~~~~~l~~~l~~~~-~~~l~~~~~~~~~~~l~~~l~~lH---~~~i~H~di~ 129 (257)
T cd08223 82 CEGGDLYHKLKEQK-GKLLPENQVVEWFVQIAMALQYLH---EKHILHRDLK 129 (257)
T ss_pred cCCCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence 9999 77887532 235899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-12 Score=127.74 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=93.7
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
...|.....||+|.|+.|..|+. ..|..||+|.+++...+ ...+.+|+.+ .++||| .....+++||
T Consensus 55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~ 134 (596)
T KOG0586|consen 55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVM 134 (596)
T ss_pred ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEE
Confidence 44566677799999999999985 36899999999876543 3458889988 999999 5688899999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+.+| ++|+..++ .........+..|+.+|++|+| .+.|+|||||
T Consensus 135 eya~~ge~~~yl~~~g---r~~e~~ar~~F~q~vsaveYcH---~k~ivHrdLk 182 (596)
T KOG0586|consen 135 EYASGGELFDYLVKHG---RMKEKEARAKFRQIVSAVEYCH---SKNIVHRDLK 182 (596)
T ss_pred EeccCchhHHHHHhcc---cchhhhhhhhhHHHHHHHHHHh---hcceeccccc
Confidence 999999 99998643 2444778889999999999999 9999999996
|
|
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-12 Score=123.80 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=89.6
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
+|.....||+|++|.||+|... +|+.||+|.+..... ....+.+|+.+ +++||| ...+..++||||
T Consensus 3 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 82 (294)
T PLN00009 3 QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEY 82 (294)
T ss_pred ceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEec
Confidence 4666778999999999999864 689999999865422 13567788887 999999 466788999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++ .+++.... ....++.....++.||+.||+||| ..+++||||+
T Consensus 83 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dl~ 129 (294)
T PLN00009 83 LDLDLKKHMDSSP-DFAKNPRLIKTYLYQILRGIAYCH---SHRVLHRDLK 129 (294)
T ss_pred ccccHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence 9877 66665322 233578888899999999999999 7899999985
|
|
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-12 Score=122.81 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=89.5
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
|.....||.|+||.||+|... +++.||+|.+.... .....+.+|+.+ .++||| ..++..++||||++
T Consensus 6 y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 85 (277)
T cd06640 6 FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLG 85 (277)
T ss_pred hhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCC
Confidence 344556999999999999864 58899999987543 234568888887 899999 46678999999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.. ..+++.+...++.|+++||+||| ..+++||||+
T Consensus 86 ~~~L~~~i~~----~~l~~~~~~~~~~~l~~~l~~lh---~~~ivH~dl~ 128 (277)
T cd06640 86 GGSALDLLRA----GPFDEFQIATMLKEILKGLDYLH---SEKKIHRDIK 128 (277)
T ss_pred CCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---hCCccCcCCC
Confidence 99 777764 24888999999999999999999 7899999985
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-11 Score=122.10 Aligned_cols=109 Identities=22% Similarity=0.231 Sum_probs=89.3
Q ss_pred ccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 487 IKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
..+.||.|++|.||+|.. .+|+.||+|++...... ...+.+|+++ .++||| ..++..++||||+++
T Consensus 3 ~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~~ 82 (283)
T cd07835 3 KVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLDL 82 (283)
T ss_pred hheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccCc
Confidence 345699999999999985 47999999998654321 3568888888 899999 566788999999976
Q ss_pred c-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
. .+++.... ...++|.++++++.||++||+||| ..+++||||+
T Consensus 83 ~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~L~~lH---~~~~~H~dl~ 126 (283)
T cd07835 83 DLKKYMDSSP-LTGLDPPLIKSYLYQLLQGIAYCH---SHRVLHRDLK 126 (283)
T ss_pred CHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCC
Confidence 5 77776432 235899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.3e-12 Score=121.00 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=88.5
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCc------hhhHHHHHHhhc--cccccC----------CCCCCcc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE------TEELAFLETSST--DFRHYN----------SHTDNDD 544 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~------~~~~~f~~e~~~--~l~H~n----------~~~~~~~ 544 (599)
+|...+.||+|+||.||+|.. .+|..||+|.+.... .....+.+|+++ .++||| ......+
T Consensus 3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~ 82 (264)
T cd06653 3 NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLS 82 (264)
T ss_pred ceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEE
Confidence 566678899999999999985 468999999875321 123568889887 999999 1234578
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|+||+++| .+++... ..+++....+++.||+.||+||| ..+|+||||+
T Consensus 83 ~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~~i~~al~~LH---~~~i~H~dl~ 133 (264)
T cd06653 83 IFVEYMPGGSIKDQLKAY---GALTENVTRRYTRQILQGVSYLH---SNMIVHRDIK 133 (264)
T ss_pred EEEEeCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCC
Confidence 999999999 7777642 24788999999999999999999 7799999985
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.7e-12 Score=120.58 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=90.2
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|...+.+|+|+||.+|++.. .+|+.||+|++.... ....++.+|+.+ +++||| ...+..++|+||+
T Consensus 2 y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~ 81 (256)
T cd08218 2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYC 81 (256)
T ss_pred ceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecC
Confidence 44567799999999999885 468999999986432 224578888887 999999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.... ...+++.+.+.++.|++.||+||| ..+++|+||+
T Consensus 82 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~l~ 128 (256)
T cd08218 82 EGGDLYKKINAQR-GVLFPEDQILDWFVQICLALKHVH---DRKILHRDIK 128 (256)
T ss_pred CCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCC
Confidence 999 67776422 234789999999999999999999 6899999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.9e-12 Score=120.25 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=91.4
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCC--CCcceeec
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHT--DNDDSSDE 548 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~--~~~~lv~e 548 (599)
|...+.||+|++|.||+|... +++.|++|.+.... .....+.+|+.. +++||| ... +..++|+|
T Consensus 2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e 81 (260)
T cd06606 2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLE 81 (260)
T ss_pred ceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEE
Confidence 455678999999999999975 68999999987654 235678888887 999999 233 67899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.... .++|.++..++.|+++||+||| ..+++||||+
T Consensus 82 ~~~~~~L~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lh---~~~~~h~dl~ 128 (260)
T cd06606 82 YVSGGSLSSLLKKFG---KLPEPVIRKYTRQILEGLAYLH---SNGIVHRDIK 128 (260)
T ss_pred ecCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 99988 88887532 6899999999999999999999 6899999985
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.6e-12 Score=121.67 Aligned_cols=111 Identities=16% Similarity=0.140 Sum_probs=91.3
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|...+.||+|++|.||++... +++.||+|++..... ...++.+|++. +++||| ...+..++|+||+
T Consensus 2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~ 81 (265)
T cd06605 2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYM 81 (265)
T ss_pred cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEec
Confidence 3444567999999999999964 689999999876532 24678889887 889999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCC-ccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKY-RKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~-~~i~Hrdl~ 599 (599)
+++ .+++.... ..+++....+++.|++.||+||| . .+++||||+
T Consensus 82 ~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH---~~~~i~H~dl~ 128 (265)
T cd06605 82 DGGSLDKILKEVQ--GRIPERILGKIAVAVLKGLTYLH---EKHKIIHRDVK 128 (265)
T ss_pred CCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHc---CCCCeecCCCC
Confidence 988 87877532 45888999999999999999999 6 899999985
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-12 Score=122.25 Aligned_cols=104 Identities=20% Similarity=0.189 Sum_probs=80.9
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc-----cccccC--------CCCCCcceeecccc
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST-----DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~-----~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
.||+|+||.||++.. .+|+.||+|.+...... ...+..|..+ ..+||+ ...+..++||||++
T Consensus 1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~ 80 (278)
T cd05606 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN 80 (278)
T ss_pred CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence 389999999999985 46899999998654221 2234444333 457888 35677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.. ...++|.++..++.|+++||+||| ..+|+||||+
T Consensus 81 g~~L~~~l~~---~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~ 124 (278)
T cd05606 81 GGDLHYHLSQ---HGVFSEAEMRFYAAEIILGLEHMH---NRFVVYRDLK 124 (278)
T ss_pred CCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCCCC
Confidence 99 667753 235899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-12 Score=125.41 Aligned_cols=105 Identities=19% Similarity=0.122 Sum_probs=85.0
Q ss_pred eccc--CCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc-
Q 007553 491 IGTG--GYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 491 lg~g--~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
||+| +||+||++.. .+|+.||||.+..... ....+.+|+.+ .++||| ..++..++|+||+++|
T Consensus 6 ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~~ 85 (328)
T cd08226 6 IGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAYGS 85 (328)
T ss_pred hCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccCCC
Confidence 5665 8899999985 4799999999865432 13567778877 799999 4567789999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... ...+++.....++.|++.||+||| ..+|+||||+
T Consensus 86 l~~~l~~~~-~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivHrDlk 128 (328)
T cd08226 86 ANSLLKTYF-PEGMSEALIGNILFGALRGLNYLH---QNGYIHRNIK 128 (328)
T ss_pred HHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 77777532 234889999999999999999999 7899999996
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-11 Score=120.13 Aligned_cols=108 Identities=21% Similarity=0.287 Sum_probs=89.3
Q ss_pred cceecccCCceEEEEEeCC-----CCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 488 KYCIGTGGYGSVYRAQLSS-----GRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~~-----g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
.+.||+|+||.||++...+ +..||+|++..... ....+..|+.+ .++||| ...+..++||||+
T Consensus 4 ~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~ 83 (258)
T smart00219 4 GKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYM 83 (258)
T ss_pred cceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEecc
Confidence 4569999999999999743 38899999976543 35678889888 889999 4557889999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++..... ..++|.+...++.|++.|++||| ..+++||||+
T Consensus 84 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lh---~~~~~h~dl~ 130 (258)
T smart00219 84 EGGDLLDYLRKNRP-KELSLSDLLSFALQIARGMEYLE---SKNFIHRDLA 130 (258)
T ss_pred CCCCHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHh---cCCeeecccc
Confidence 999 888874221 12899999999999999999999 7799999985
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.2e-12 Score=122.09 Aligned_cols=117 Identities=23% Similarity=0.261 Sum_probs=94.7
Q ss_pred HHhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC--------CC------CC
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DF-RHYN--------SH------TD 541 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n--------~~------~~ 541 (599)
.++++|.....+|+|++|.||+|... +++.+|+|.+.........|.+|+.+ ++ +||| .. ++
T Consensus 3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~ 82 (275)
T cd06608 3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD 82 (275)
T ss_pred CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence 35677888888999999999999964 57899999987765555678889887 66 7999 11 33
Q ss_pred Ccceeecccccc--cccccCCC-CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAPE-NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++| .++++... ....+++.....++.|++.||+||| ..+++||||+
T Consensus 83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~~l~ 140 (275)
T cd06608 83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLH---ENKVIHRDIK 140 (275)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCC
Confidence 478999999999 67765421 2346899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.3e-12 Score=122.09 Aligned_cols=108 Identities=20% Similarity=0.194 Sum_probs=90.0
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
|.....+|.|++|.||+|... +++.||+|.+.... .....+.+|+.+ .++||| ..+...++|+||++
T Consensus 3 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~ 82 (274)
T cd06609 3 FTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCG 82 (274)
T ss_pred hhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeC
Confidence 444566999999999999964 68999999986543 224568888887 999999 45677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++... .+++.+...++.|++.||+||| ..+++||||+
T Consensus 83 ~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~ 125 (274)
T cd06609 83 GGSCLDLLKPG----KLDETYIAFILREVLLGLEYLH---EEGKIHRDIK 125 (274)
T ss_pred CCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 99 7777743 5899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-12 Score=118.29 Aligned_cols=113 Identities=20% Similarity=0.175 Sum_probs=90.0
Q ss_pred hccccceecccCCceEEEEEeC---C--CCEEEEEEecCCchh---hHHHHHHhhc--cccccC---------CCCCCcc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS---S--GRVVALKKLHRSETE---ELAFLETSST--DFRHYN---------SHTDNDD 544 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~---~--g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n---------~~~~~~~ 544 (599)
.|.....||+|.||.||+|+-. + ...+|+|+++..... ...-.+||.+ +++||| ......+
T Consensus 25 ~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~ 104 (438)
T KOG0666|consen 25 EYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKVW 104 (438)
T ss_pred HhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEE
Confidence 4555566999999999999642 2 236899999876433 4567889998 999999 3478899
Q ss_pred eeecccccc-cccccCC--CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAP--ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|++||.++. .+.++-+ +..+.+.-.....|..||..|+.||| +.=|+|||||
T Consensus 105 l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH---~NWvlHRDLK 159 (438)
T KOG0666|consen 105 LLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLH---SNWVLHRDLK 159 (438)
T ss_pred EEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHh---hhheeeccCC
Confidence 999999999 6666533 22356777888999999999999999 8899999997
|
|
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=125.08 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=93.4
Q ss_pred cHHHHHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC-------C--
Q 007553 474 TFEEMIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN-------S-- 538 (599)
Q Consensus 474 ~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n-------~-- 538 (599)
...++...+++|.....||+|+||.||+|.. .+|+.||+|++..... ....+.+|+.+ +++||| .
T Consensus 8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~ 87 (345)
T cd07877 8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP 87 (345)
T ss_pred HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeee
Confidence 4566677788898888999999999999984 5789999999875322 23567788887 999999 1
Q ss_pred -----CCCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 -----HTDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 -----~~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.....++|+||+.+. .+++..+ .++|.++..++.||++||+||| ..+|+||||+
T Consensus 88 ~~~~~~~~~~~lv~~~~~~~L~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlk 147 (345)
T cd07877 88 ARSLEEFNDVYLVTHLMGADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIH---SADIIHRDLK 147 (345)
T ss_pred cccccccccEEEEehhcccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence 113367888887433 6666532 3899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-12 Score=123.61 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=89.2
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
+|...+.||+|++|.||+|... +++.||||+++.... ....+.+|+.+ .++||| ..++..++||||
T Consensus 2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~ 81 (288)
T cd07833 2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY 81 (288)
T ss_pred ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence 3556677999999999999964 588999999865422 23568889888 899999 456778999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++ .+.+..+ ...+++.+...++.||++||+||| ..+++||||+
T Consensus 82 ~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~ 127 (288)
T cd07833 82 VERTLLELLEAS--PGGLPPDAVRSYIWQLLQAIAYCH---SHNIIHRDIK 127 (288)
T ss_pred CCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 9999 4333322 234899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-12 Score=126.27 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=87.0
Q ss_pred ccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCC-cceeecccc
Q 007553 487 IKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDN-DDSSDEHLA 551 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~-~~lv~e~~~ 551 (599)
..+.+|+|+||.++..+. .++..+++|.+..... +++.-.+|+.+ +++||| ...+. +++||||++
T Consensus 8 ~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~e 87 (426)
T KOG0589|consen 8 VLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEYCE 87 (426)
T ss_pred hhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEeecC
Confidence 345699999999997764 3678999999865432 24467788888 999999 34455 899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|| .+.+...+ +.-+...+...+..|+..|+.||| ...|+|||||
T Consensus 88 Gg~l~~~i~~~k-~~~f~E~~i~~~~~Q~~~av~ylH---~~~iLHRDlK 133 (426)
T KOG0589|consen 88 GGDLAQLIKEQK-GVLFPEERILKWFVQILLAVNYLH---ENRVLHRDLK 133 (426)
T ss_pred CCCHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHH---hhhhhcccch
Confidence 99 66665433 345778889999999999999999 9999999996
|
|
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=120.73 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=87.2
Q ss_pred ccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----------hHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 487 IKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----------ELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----------~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
....||+|++|.||+|.. .+++.||+|.+...... ...+.+|+.+ +++||| ...+..++
T Consensus 4 ~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 83 (267)
T cd06628 4 KGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLNI 83 (267)
T ss_pred ccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEE
Confidence 346799999999999985 46889999988543211 2357778887 999999 46678899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+||+++| .+++... ..+++.+...++.|++.||+||| ..+++||||+
T Consensus 84 v~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~l~~~l~~lH---~~~ivH~di~ 133 (267)
T cd06628 84 FLEYVPGGSVAALLNNY---GAFEETLVRNFVRQILKGLNYLH---NRGIIHRDIK 133 (267)
T ss_pred EEEecCCCCHHHHHHhc---cCccHHHHHHHHHHHHHHHHHHH---hcCcccccCC
Confidence 99999999 7888642 34789999999999999999999 7799999985
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.9e-12 Score=121.76 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=87.9
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc--hhhHHHHHHhhc--ccc---ccC--------CCCCCcceeec
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE--TEELAFLETSST--DFR---HYN--------SHTDNDDSSDE 548 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~---H~n--------~~~~~~~lv~e 548 (599)
|...+.||+|+||.||+|.. .+|+.||+|.+.... ....++.+|+.+ .++ ||| ..++..++|||
T Consensus 3 y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e 82 (277)
T cd06917 3 YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIME 82 (277)
T ss_pred hhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEe
Confidence 34456699999999999995 578999999986542 224567788877 665 998 35566889999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .++++.. .++|.....++.|+++||.||| ..+|+||||+
T Consensus 83 ~~~~~~L~~~~~~~----~l~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~ 128 (277)
T cd06917 83 YAEGGSVRTLMKAG----PIAEKYISVIIREVLVALKYIH---KVGVIHRDIK 128 (277)
T ss_pred cCCCCcHHHHHHcc----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcC
Confidence 99999 7777642 5899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-12 Score=141.93 Aligned_cols=131 Identities=24% Similarity=0.286 Sum_probs=81.1
Q ss_pred CCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCc--CcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCC
Q 007553 17 CFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNR--LTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94 (599)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 94 (599)
.....|++++.+ +.+. .++... .+++|++|-+.+|. +.....+.|..++.|++|||++|.-.+.+|..+++|-+|
T Consensus 521 ~~~~~rr~s~~~-~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMN-NKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEec-cchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 334556666665 4432 233222 34567777777765 443333446667777777777766555677777777777
Q ss_pred cEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCc
Q 007553 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151 (599)
Q Consensus 95 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 151 (599)
|+|+++++.+. .+|.+++++.+|.+|++..+.-...+|+....|++|++|.+....
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 77777777766 566777777777777777666554556656667777777666543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-11 Score=128.08 Aligned_cols=197 Identities=40% Similarity=0.613 Sum_probs=100.3
Q ss_pred EEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCC-cccEEecccCccCCCCcccccCCCCCCeeecccc
Q 007553 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK-NLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYN 174 (599)
Q Consensus 96 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 174 (599)
.|++..|.+... ...+..++.++.|++.+|.++ .++.....++ +|++|++++|.+.. +|..++.+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 455555555322 223444455666666666665 2333344442 56666666666552 3334555666666666666
Q ss_pred cccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCc
Q 007553 175 NLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPR 254 (599)
Q Consensus 175 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 254 (599)
++.. ++...+..+.|+.|++++|.+. .+|.....+..|++|.+++|.+. ..+..+..+.++..+.+.+|.+.. .+.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence 6553 2223334555666666666555 33333334444555666555432 223344555555555555555542 244
Q ss_pred ccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCC
Q 007553 255 EVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP 301 (599)
Q Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 301 (599)
.++.+++++.|++++|.++.. +. +..+.+++.|++++|.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence 455555566666666555432 22 5555556666666655554433
|
|
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-12 Score=128.10 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=90.7
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
|.....+|.|+.|.|-.|+. .+|+.+|||.+.... .......+||.+ -+.||| .+...+|+|.||
T Consensus 14 wkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEy 93 (786)
T KOG0588|consen 14 WKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEY 93 (786)
T ss_pred eeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEe
Confidence 34456699999999999984 579999999996642 223457788887 789999 467789999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|++| .+|+..++ ++...+..++..||..|++|+| ...|+|||||
T Consensus 94 v~gGELFdylv~kG---~l~e~eaa~ff~QIi~gv~yCH---~~~icHRDLK 139 (786)
T KOG0588|consen 94 VPGGELFDYLVRKG---PLPEREAAHFFRQILDGVSYCH---AFNICHRDLK 139 (786)
T ss_pred cCCchhHHHHHhhC---CCCCHHHHHHHHHHHHHHHHHh---hhcceeccCC
Confidence 9999 78887543 4888999999999999999999 8999999997
|
|
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=121.66 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=86.5
Q ss_pred ccccceecccCCceEEEEEe----CCCCEEEEEEecCCch-----hhHHHHHHhhc--cc-cccC--------CCCCCcc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL----SSGRVVALKKLHRSET-----EELAFLETSST--DF-RHYN--------SHTDNDD 544 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~----~~g~~vavK~l~~~~~-----~~~~f~~e~~~--~l-~H~n--------~~~~~~~ 544 (599)
|.....||.|+||.||.+.. .+|..||+|++..... ....+.+|+.+ .+ +||| ..+...+
T Consensus 2 y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (290)
T cd05613 2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLH 81 (290)
T ss_pred ceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEE
Confidence 34456799999999999885 3689999999865322 13457778877 67 5888 3456678
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++... ..+++.+...++.||++||+||| ..+++||||+
T Consensus 82 lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~ 132 (290)
T cd05613 82 LILDYINGGELFTHLSQR---ERFKEQEVQIYSGEIVLALEHLH---KLGIIYRDIK 132 (290)
T ss_pred EEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence 999999999 7888742 34788889999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=122.78 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=88.1
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CC--------C
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SH--------T 540 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~--------~ 540 (599)
++|.....||+|+||.||+|.. .+|+.||||.+...... ...+.+|+.+ +++||| .. .
T Consensus 12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 91 (310)
T cd07865 12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK 91 (310)
T ss_pred hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCC
Confidence 3566778899999999999986 46899999998643221 3345678877 999999 11 1
Q ss_pred CCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...++||||++++ .+++.... ..+++.+...++.||+.||+||| ..+++||||+
T Consensus 92 ~~~~lv~e~~~~~l~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dl~ 146 (310)
T cd07865 92 GSFYLVFEFCEHDLAGLLSNKN--VKFTLSEIKKVMKMLLNGLYYIH---RNKILHRDMK 146 (310)
T ss_pred ceEEEEEcCCCcCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 3358999999987 77776432 34899999999999999999999 6799999986
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=119.02 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=86.4
Q ss_pred ecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--
Q 007553 491 IGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN-- 553 (599)
Q Consensus 491 lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G-- 553 (599)
||.|++|.||++... +++.||+|.+..... ....+.+|+.+ .++||| ..++..++|+||+++|
T Consensus 1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 80 (262)
T cd05572 1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL 80 (262)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence 689999999999964 489999999865421 24568888887 999999 4667789999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++..+..++.||+.||+||| +.+++||||+
T Consensus 81 ~~~l~~~---~~l~~~~~~~~~~~i~~~l~~lH---~~~~~h~dl~ 120 (262)
T cd05572 81 WTILRDR---GLFDEYTARFYIACVVLAFEYLH---NRGIIYRDLK 120 (262)
T ss_pred HHHHhhc---CCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCC
Confidence 8888743 24788999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=121.16 Aligned_cols=107 Identities=17% Similarity=0.129 Sum_probs=83.9
Q ss_pred cceecccCCceEEEEEe-CCCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCC--CCcceeecccc
Q 007553 488 KYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHT--DNDDSSDEHLA 551 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~--~~~~lv~e~~~ 551 (599)
.+.+|+|+||.||+|.. .+++.||+|++..... ......+|+.+ ++ +||| ... +..++|+||++
T Consensus 4 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~ 83 (282)
T cd07831 4 LGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMD 83 (282)
T ss_pred EeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCC
Confidence 45699999999999985 4689999999865422 22334456665 66 4999 233 77899999999
Q ss_pred cc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++ .+++..+. ..++|.+...++.||++||+||| ..+++||||+
T Consensus 84 ~~l~~~l~~~~--~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~ 127 (282)
T cd07831 84 MNLYELIKGRK--RPLPEKRVKSYMYQLLKSLDHMH---RNGIFHRDIK 127 (282)
T ss_pred ccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCceecccC
Confidence 77 77776432 35899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-11 Score=128.00 Aligned_cols=200 Identities=38% Similarity=0.555 Sum_probs=139.3
Q ss_pred EEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCC-cCCEEeeecccccccCCccccCCCcccEEecccC
Q 007553 72 ELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLT-NLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150 (599)
Q Consensus 72 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 150 (599)
.|++..+.+.. ....+..++.++.|++.+|.+.. ++.....+. +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 57777776632 22334455778888888888774 444555553 7888888888877 34455777888888888888
Q ss_pred ccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcc
Q 007553 151 NLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP 230 (599)
Q Consensus 151 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 230 (599)
+++. ++.....++.|+.|++++|++.. +|........|++|.++.|.+. ..+..+..+..+..+.+.+|++.. .+.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence 8774 34334467788888888888774 4444445556888888888533 345556777777888888887763 356
Q ss_pred cCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCc
Q 007553 231 TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI 280 (599)
Q Consensus 231 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 280 (599)
.++.+++++.|++++|.++.. +. ++.+.+++.|++++|.+...++...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhhh
Confidence 778888899999999988843 33 7888889999999988876655443
|
|
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-12 Score=119.80 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=90.3
Q ss_pred cceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--c
Q 007553 488 KYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--E 554 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~ 554 (599)
...+|+|+||.||++.. ..|++||+|.+... .+-++.++||.+ .++.|. .....+|+|||||--| .
T Consensus 38 ~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~-sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiS 116 (502)
T KOG0574|consen 38 VGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD-TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSIS 116 (502)
T ss_pred HHHhcCCcchHHHHHHHhccCcEEEEEecCcc-chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCcHH
Confidence 34589999999999986 46999999998664 335788999998 787777 5678899999999999 8
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 555 HFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 555 ~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+.++.+ +++|+..+...+..+-.+||+||| ..+=||||+|
T Consensus 117 DI~R~R--~K~L~E~EIs~iL~~TLKGL~YLH---~~~KIHRDIK 156 (502)
T KOG0574|consen 117 DIMRAR--RKPLSEQEISAVLRDTLKGLQYLH---DLKKIHRDIK 156 (502)
T ss_pred HHHHHh--cCCccHHHHHHHHHHHHhHHHHHH---HHHHHHhhcc
Confidence 877753 456999999999999999999999 8899999986
|
|
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=120.81 Aligned_cols=107 Identities=23% Similarity=0.283 Sum_probs=87.9
Q ss_pred cceecccCCceEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCC--CCcceeecccc
Q 007553 488 KYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHT--DNDDSSDEHLA 551 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~--~~~~lv~e~~~ 551 (599)
...||+|++|.||+|... +|+.+|+|++.... .....+.+|+.+ .++||| ... +..++|+||++
T Consensus 4 ~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~ 83 (287)
T cd07840 4 IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMD 83 (287)
T ss_pred eEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEecccc
Confidence 456999999999999964 58999999997653 124568888887 899999 233 67899999999
Q ss_pred cc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++ .+++..+. ..+++.++..++.||++||+||| ..+++||||+
T Consensus 84 ~~l~~~~~~~~--~~~~~~~~~~i~~~i~~al~~LH---~~~~~h~dl~ 127 (287)
T cd07840 84 HDLTGLLDSPE--VKFTESQIKCYMKQLLEGLQYLH---SNGILHRDIK 127 (287)
T ss_pred ccHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCc
Confidence 77 77776432 35899999999999999999999 6799999985
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=119.07 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=92.5
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
++|.....+|.|+||.||+|.. .+++.+|+|.+..... ....+.+|+.+ .++||| ..++..++||||+
T Consensus 3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~ 82 (262)
T cd06613 3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYC 82 (262)
T ss_pred cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCC
Confidence 3566677899999999999986 4578899999876533 34668888887 999999 4677789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++... ...+++.+...++.|++.||+||| ..+|+||||+
T Consensus 83 ~~~~l~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~ 128 (262)
T cd06613 83 GGGSLQDIYQVT--RGPLSELQIAYVCRETLKGLAYLH---ETGKIHRDIK 128 (262)
T ss_pred CCCcHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHH---hCCceecCCC
Confidence 999 7777642 235889999999999999999999 7899999985
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-13 Score=135.07 Aligned_cols=173 Identities=34% Similarity=0.463 Sum_probs=114.2
Q ss_pred CCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEE
Q 007553 19 PNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLR 98 (599)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 98 (599)
..-...+++. |.+. .+|..+..|..|..+.|..|.+. .+|.+++++..|.+|||+.|+++ .+|..++.|+ |+.|.
T Consensus 75 tdt~~aDlsr-NR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSR-NRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred cchhhhhccc-cccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 3344555555 4444 56666666667777777777776 66667777777777777777776 5565555553 67777
Q ss_pred eecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccc
Q 007553 99 LQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG 178 (599)
Q Consensus 99 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 178 (599)
+++|+++ .+|..++.+++|..|+.+.|++. .+|..++++.+|+.|.+..|++. .+|+.+..|+ |..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-
Confidence 7777776 45666776677777777777776 44555677777777777777766 3455555443 667777777766
Q ss_pred cCccccCCCCCCCEEEccCCccc
Q 007553 179 PLPKEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 179 ~~~~~l~~l~~L~~L~l~~n~~~ 201 (599)
.+|-.|..|..|++|.|.+|.+.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 45666777777777777777665
|
|
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=119.76 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=87.1
Q ss_pred ccccceecccCCceEEEEEeCC--CCEEEEEEecCCc-----------hhhHHHHHHhhc---cccccC--------CCC
Q 007553 485 FHIKYCIGTGGYGSVYRAQLSS--GRVVALKKLHRSE-----------TEELAFLETSST---DFRHYN--------SHT 540 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~~--g~~vavK~l~~~~-----------~~~~~f~~e~~~---~l~H~n--------~~~ 540 (599)
|.....||+|+||.||+|.... ++.+|||.+.... ....++..|+.+ .++||| ...
T Consensus 2 y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~ 81 (269)
T cd08528 2 YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEN 81 (269)
T ss_pred chhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccC
Confidence 4445679999999999999754 6889999875321 112457778776 589999 466
Q ss_pred CCcceeecccccc--cccccC-CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN--EHFLSA-PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G--~~~l~~-~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+..++||||+++| .+++.. +.....+++.+..+++.|++.||.|||+ ..+++||||+
T Consensus 82 ~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~--~~~i~H~dl~ 141 (269)
T cd08528 82 DRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHK--EKRIVHRDLT 141 (269)
T ss_pred CeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc--CCceeecCCC
Confidence 7889999999999 777643 1223458899999999999999999993 2579999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-11 Score=124.64 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=88.6
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHhhc--cc-cccC----------CCCCCcc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE---TEELAFLETSST--DF-RHYN----------SHTDNDD 544 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~---~~~~~f~~e~~~--~l-~H~n----------~~~~~~~ 544 (599)
.++|.....||+|+||.||+|... +|+.+|||++.... .....+.+|+.+ .+ +||| ..+...+
T Consensus 6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~ 85 (337)
T cd07852 6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY 85 (337)
T ss_pred hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence 345666677999999999999964 68899999885421 223457778887 88 9999 1233579
Q ss_pred eeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++. .+++... .++|.++..++.|||.||+||| ..+|+||||+
T Consensus 86 lv~e~~~~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH---~~~i~H~dl~ 134 (337)
T cd07852 86 LVFEYMETDLHAVIRAN----ILEDVHKRYIMYQLLKALKYIH---SGNVIHRDLK 134 (337)
T ss_pred EEecccccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 999999976 7777642 5899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-11 Score=119.87 Aligned_cols=107 Identities=21% Similarity=0.186 Sum_probs=88.9
Q ss_pred cccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 486 HIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 486 ~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
...+.||+|++|.||++.. .+++.+|+|++...... ...+.+|+.+ .++||| ..++..++|+||+++|
T Consensus 22 ~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~ 101 (285)
T cd06648 22 DNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGG 101 (285)
T ss_pred hcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCC
Confidence 3346799999999999985 46899999998654332 4557888887 899999 4567889999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.. ..+++.+...++.|++.||+||| ..+|+||||+
T Consensus 102 ~L~~~~~~----~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~dl~ 142 (285)
T cd06648 102 ALTDIVTH----TRMNEEQIATVCLAVLKALSFLH---AQGVIHRDIK 142 (285)
T ss_pred CHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 777774 23899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=120.75 Aligned_cols=103 Identities=21% Similarity=0.241 Sum_probs=86.2
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccccc--cc
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--EH 555 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~~ 555 (599)
.||+|+||.||++.. .+|+.||||.+...... ...+.+|+.+ .++||| ..++..++||||+++| .+
T Consensus 27 ~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 106 (292)
T cd06657 27 KIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTD 106 (292)
T ss_pred HcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHHH
Confidence 489999999999986 47899999998654332 4568888887 999999 4567889999999999 66
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 556 FLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 556 ~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++... .++|.....++.|++.|++||| ..+++||||+
T Consensus 107 ~~~~~----~~~~~~~~~~~~ql~~~l~~lH---~~givH~dl~ 143 (292)
T cd06657 107 IVTHT----RMNEEQIAAVCLAVLKALSVLH---AQGVIHRDIK 143 (292)
T ss_pred HHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 66532 3799999999999999999999 7799999985
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=119.75 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=90.4
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--ccc-ccC--------CCCCCcceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFR-HYN--------SHTDNDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~-H~n--------~~~~~~~lv~ 547 (599)
+|.....||+|+||.||+|... +|+.||+|.+.... .....+..|+.+ +++ ||| ...+..++||
T Consensus 2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~ 81 (280)
T cd05581 2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVL 81 (280)
T ss_pred CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEE
Confidence 4555677999999999999964 68999999986532 223567777777 888 999 4667889999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..++|.+...|+.|++.||+||| ..+++||||+
T Consensus 82 e~~~~~~L~~~l~~~---~~l~~~~~~~i~~ql~~~l~~Lh---~~~~~H~dl~ 129 (280)
T cd05581 82 EYAPNGELLQYIRKY---GSLDEKCTRFYAAEILLALEYLH---SKGIIHRDLK 129 (280)
T ss_pred cCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence 999999 7788743 25899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=122.46 Aligned_cols=112 Identities=21% Similarity=0.217 Sum_probs=87.5
Q ss_pred ccccceecccCCceEEEEEeC---CCCEEEEEEecCCc---h-hhHHHHHHhhc--cccccC--------CCC--CCcce
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS---SGRVVALKKLHRSE---T-EELAFLETSST--DFRHYN--------SHT--DNDDS 545 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~---~g~~vavK~l~~~~---~-~~~~f~~e~~~--~l~H~n--------~~~--~~~~l 545 (599)
|.....||+|++|.||+|... +++.||+|.+.... . ....+.+|+.+ .++||| ... +..++
T Consensus 2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 81 (316)
T cd07842 2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL 81 (316)
T ss_pred ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence 344567999999999999964 47899999997632 1 13556778877 999999 233 67899
Q ss_pred eecccccc-cccccCCC--CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN-EHFLSAPE--NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G-~~~l~~~~--~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||++++ .+++.... ....++......++.||+.||+||| ..+|+||||+
T Consensus 82 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~h~dlk 135 (316)
T cd07842 82 LFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLH---SNWVLHRDLK 135 (316)
T ss_pred EEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCC
Confidence 99999988 65554321 1235788889999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=118.57 Aligned_cols=110 Identities=22% Similarity=0.240 Sum_probs=83.9
Q ss_pred ccceecccCCceEEEEEeC----CCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCC------CCc
Q 007553 487 IKYCIGTGGYGSVYRAQLS----SGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHT------DND 543 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~------~~~ 543 (599)
..+.||+|+||.||+|... .++.||||.+.... ....++.+|+.+ +++||| ... ...
T Consensus 3 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 82 (273)
T cd05074 3 LGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIP 82 (273)
T ss_pred chhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccce
Confidence 3456999999999999863 36889999986542 224568888887 999999 111 123
Q ss_pred ceeecccccc--cccccCC---CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAP---ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~---~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++||+++| .+++... .....+++....+++.||+.|++||| ..+|+||||+
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dik 140 (273)
T cd05074 83 MVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS---SKNFIHRDLA 140 (273)
T ss_pred EEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccc
Confidence 6889999999 6666421 11234788999999999999999999 7799999986
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=120.73 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=86.4
Q ss_pred ccccceecccCCceEEEEEe----CCCCEEEEEEecCCch-----hhHHHHHHhhc--cc-cccC--------CCCCCcc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL----SSGRVVALKKLHRSET-----EELAFLETSST--DF-RHYN--------SHTDNDD 544 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~----~~g~~vavK~l~~~~~-----~~~~f~~e~~~--~l-~H~n--------~~~~~~~ 544 (599)
|.....||+|++|.||++.. .+++.||||.+..... ....+.+|+.+ ++ +||| ..++..+
T Consensus 2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~ 81 (288)
T cd05583 2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH 81 (288)
T ss_pred ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence 44456799999999999874 3578899999864321 13457788877 77 5888 3556788
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++... ..+++.....++.|+++||+||| ..+++||||+
T Consensus 82 lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH---~~~~~H~dl~ 132 (288)
T cd05583 82 LILDYVNGGELFTHLYQR---EHFTESEVRVYIAEIVLALDHLH---QLGIIYRDIK 132 (288)
T ss_pred EEEecCCCCcHHHHHhhc---CCcCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 999999999 7777632 34889999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-11 Score=127.19 Aligned_cols=106 Identities=9% Similarity=0.084 Sum_probs=86.2
Q ss_pred hccccceecccCCceEEEEEeC---CCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS---SGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~---~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
.|.....||+|+||.||++... .+..||||.+.... .+.+|+.+ .++||| ...+..++||||+
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~----~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 168 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGK----TPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKY 168 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccc----cHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhc
Confidence 4666778999999999998753 35789999886432 34568877 999999 2456789999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++ .+++.. ...++|.+++.++.||+.||+||| ..+|+||||+
T Consensus 169 ~~~l~~~l~~---~~~l~~~~~~~i~~ql~~aL~~LH---~~givHrDlk 212 (392)
T PHA03207 169 KCDLFTYVDR---SGPLPLEQAITIQRRLLEALAYLH---GRGIIHRDVK 212 (392)
T ss_pred CCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 877 888842 245899999999999999999999 7899999996
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-13 Score=134.36 Aligned_cols=174 Identities=34% Similarity=0.464 Sum_probs=89.4
Q ss_pred CCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEe
Q 007553 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLF 146 (599)
Q Consensus 67 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 146 (599)
+..-...||+.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|.+|+++.|+++ .+|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 333444555555554 44555555555555555555554 34455555555555555555555 3444444443 55555
Q ss_pred cccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcc
Q 007553 147 LDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDG 226 (599)
Q Consensus 147 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 226 (599)
+++|+++ .+|+.++.++.|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..++. -.|..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence 5555554 34445555555555555555554 23444555555555555555554 34444442 22455555555554
Q ss_pred cCcccCCCCCCCCEEEccCCcCC
Q 007553 227 PIPPTIGNLTYLTSLDLSSNQLS 249 (599)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~n~l~ 249 (599)
.+|-.|.+|+.|++|.|.+|.+.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 45555555555555555555554
|
|
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=118.24 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=91.0
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|...+.+|+|++|.||++.. .+|+.+|+|.+.... .+..++.+|+.+ .++||| ......++|+||+
T Consensus 2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~ 81 (256)
T cd08530 2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYA 81 (256)
T ss_pred ceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhc
Confidence 44566799999999999974 468899999986532 224567788887 899999 4567789999999
Q ss_pred ccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++ .+++... .....+++.....++.|+++||+||| ..+++||||+
T Consensus 82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh---~~~i~h~~l~ 130 (256)
T cd08530 82 PFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH---EQKILHRDLK 130 (256)
T ss_pred CCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCC
Confidence 999 7777652 22356899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-12 Score=118.70 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=94.5
Q ss_pred HHHHHHhhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------
Q 007553 476 EEMIQATEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN-------- 537 (599)
Q Consensus 476 ~~l~~at~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------- 537 (599)
+++......|.....+-+|.||.||+|.|+ +.+.|-||.++....+ ...|+.|..+ .+.|||
T Consensus 277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ 356 (563)
T KOG1024|consen 277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVS 356 (563)
T ss_pred HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEE
Confidence 444445556777777889999999999764 3356778888776554 4567787766 899999
Q ss_pred -CCCCCcceeecccccc--cccccC-----CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 538 -SHTDNDDSSDEHLANN--EHFLSA-----PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 538 -~~~~~~~lv~e~~~~G--~~~l~~-----~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
.+.+..+..|.|+.-| +.||+. ......++-.+.+.||.|+|.||+||| ..+|||.||
T Consensus 357 ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh---~~~ViHkDi 422 (563)
T KOG1024|consen 357 IEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLH---NHGVIHKDI 422 (563)
T ss_pred eeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHH---hcCcccchh
Confidence 4667788999999999 999983 233345777889999999999999999 899999997
|
|
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-11 Score=121.65 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=87.1
Q ss_pred cceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 488 KYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
...+|+|+||.||+|+. .+|+.||+|.+..... ....+.+|+++ .++||| ...+..++||||+++
T Consensus 26 ~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 105 (313)
T cd06633 26 LHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCLG 105 (313)
T ss_pred ceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCCC
Confidence 45699999999999985 4689999999865322 23467788887 999999 356778999999987
Q ss_pred c-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+ .+++..+ ..+++|.++..++.||+.|++||| ..+|+||||+
T Consensus 106 ~l~~~l~~~--~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dl~ 148 (313)
T cd06633 106 SASDLLEVH--KKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIK 148 (313)
T ss_pred CHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 7 6666542 235899999999999999999999 7799999985
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-11 Score=123.33 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=91.5
Q ss_pred HHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC---------CCCCC
Q 007553 478 MIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN---------SHTDN 542 (599)
Q Consensus 478 l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n---------~~~~~ 542 (599)
+...+++|...+.||.|+||.||++.- .+|+.||||++.... .....+.+|+.+ .++||| ..++.
T Consensus 5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~ 84 (328)
T cd07856 5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLED 84 (328)
T ss_pred eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc
Confidence 344667788888999999999999984 478999999885421 124567788888 999999 23556
Q ss_pred cceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++|+||+.+. .+++... .+++.....++.|+++||+||| ..+|+||||+
T Consensus 85 ~~lv~e~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~aL~~LH---~~~iiH~dl~ 135 (328)
T cd07856 85 IYFVTELLGTDLHRLLTSR----PLEKQFIQYFLYQILRGLKYVH---SAGVVHRDLK 135 (328)
T ss_pred EEEEeehhccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 88999999655 7666632 3788888899999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-11 Score=117.14 Aligned_cols=116 Identities=10% Similarity=0.062 Sum_probs=85.4
Q ss_pred HHHHHHhhhcccccee--cccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc-cccccC--------CCCCCc
Q 007553 476 EEMIQATEDFHIKYCI--GTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST-DFRHYN--------SHTDND 543 (599)
Q Consensus 476 ~~l~~at~~~~~~~~l--g~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~-~l~H~n--------~~~~~~ 543 (599)
.+...-.++|...+.+ |+|+||.||++.. .++..+|+|.+........+ .++.. ..+||| ...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~e--~~~~~~~~~h~~iv~~~~~~~~~~~~ 84 (267)
T PHA03390 7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAIE--PMVHQLMKDNPNFIKLYYSVTTLKGH 84 (267)
T ss_pred HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchhh--HHHHHHhhcCCCEEEEEEEEecCCee
Confidence 3344444455444444 9999999999985 46889999998653221111 11111 237998 456789
Q ss_pred ceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+++| .+++... ..++|.+...++.||++|++||| ..+++||||+
T Consensus 85 ~iv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~ 136 (267)
T PHA03390 85 VLIMDYIKDGDLFDLLKKE---GKLSEAEVKKIIRQLVEALNDLH---KHNIIHNDIK 136 (267)
T ss_pred EEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCC
Confidence 9999999999 8888743 26899999999999999999999 7889999985
|
|
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-11 Score=117.37 Aligned_cols=112 Identities=19% Similarity=0.176 Sum_probs=92.0
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|...+.||+|++|.||++... ++..+|+|++..... ...++.+|+++ .++||| ..++..++|+||+
T Consensus 2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~ 81 (258)
T cd08215 2 YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYA 81 (258)
T ss_pred ceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEec
Confidence 445567999999999999964 689999999976432 34568888887 899999 3567889999999
Q ss_pred ccc--cccccCCC-CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPE-NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.... ....+++.+...++.+++.||+||| ..+++||||+
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~~~H~dl~ 130 (258)
T cd08215 82 DGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH---SRKILHRDIK 130 (258)
T ss_pred CCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecccCC
Confidence 999 77776532 2356899999999999999999999 6799999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-11 Score=116.51 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=91.0
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
|.....||+|++|.||++... +++.||+|.+..... ....+.+|+++ +++||| ...+..++||||+
T Consensus 2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~ 81 (254)
T cd06627 2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYA 81 (254)
T ss_pred ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecC
Confidence 344567999999999999854 678999999976542 34678889887 899999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++ .+++... ..++|..+..++.|++.|+.||| ..+|+||||+
T Consensus 82 ~~~~L~~~~~~~---~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~ 126 (254)
T cd06627 82 ENGSLRQIIKKF---GPFPESLVAVYVYQVLQGLAYLH---EQGVIHRDIK 126 (254)
T ss_pred CCCcHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCC
Confidence 999 7777643 35899999999999999999999 7899999985
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-11 Score=117.71 Aligned_cols=104 Identities=18% Similarity=0.105 Sum_probs=81.9
Q ss_pred eecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc---cccccC--------CCCCCcceeecccccc
Q 007553 490 CIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST---DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
.+|+|+||.||+|.. .+|+.||||.+...... ...+..|..+ ..+||| ..++..++|+||+++|
T Consensus 3 ~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~ 82 (260)
T cd05611 3 PISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNGG 82 (260)
T ss_pred cCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCCC
Confidence 489999999999985 46899999998654321 2233444433 668999 3567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++++.. ..+++.....++.||+.||.||| ..+++||||+
T Consensus 83 ~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH---~~~i~H~dl~ 124 (260)
T cd05611 83 DCASLIKTL---GGLPEDWAKQYIAEVVLGVEDLH---QRGIIHRDIK 124 (260)
T ss_pred CHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 7777642 34788899999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-11 Score=121.54 Aligned_cols=117 Identities=20% Similarity=0.169 Sum_probs=89.2
Q ss_pred HHHHHHHh----hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC-------
Q 007553 475 FEEMIQAT----EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN------- 537 (599)
Q Consensus 475 ~~~l~~at----~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n------- 537 (599)
.+|+..++ .+|.....||+|+||.||+|.. .+|+.||||++..... ....+.+|+.+ .++|||
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~ 82 (342)
T cd07879 3 REEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDV 82 (342)
T ss_pred hhhhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhhe
Confidence 34444443 5677778899999999999985 4689999999865321 13457788888 899999
Q ss_pred -CC------CCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 -SH------TDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 -~~------~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.. ....++|+||+... .++.. ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 83 ~~~~~~~~~~~~~~lv~e~~~~~l~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dlk 144 (342)
T cd07879 83 FTSAVSGDEFQDFYLVMPYMQTDLQKIMG-----HPLSEDKVQYLVYQMLCGLKYIH---SAGIIHRDLK 144 (342)
T ss_pred ecccccCCCCceEEEEecccccCHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 11 12358999999865 54432 24889999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-11 Score=123.09 Aligned_cols=106 Identities=23% Similarity=0.229 Sum_probs=86.1
Q ss_pred cceecccCCceEEEEEe-CCCCEEEEEEecCCchh---------------hHHHHHHhhc--cccccC--------CCCC
Q 007553 488 KYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---------------ELAFLETSST--DFRHYN--------SHTD 541 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---------------~~~f~~e~~~--~l~H~n--------~~~~ 541 (599)
.+.||+|+||+||+|.. .+|+.||||.+...... ...+.+|+++ .++||| ..++
T Consensus 14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 93 (335)
T PTZ00024 14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD 93 (335)
T ss_pred hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence 35699999999999985 46899999988643221 1246788887 999999 4667
Q ss_pred Ccceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++. .+++.. ...+++.....++.|++.||+||| ..+|+||||+
T Consensus 94 ~~~lv~e~~~~~l~~~l~~---~~~~~~~~~~~~~~ql~~aL~~LH---~~~i~H~dl~ 146 (335)
T PTZ00024 94 FINLVMDIMASDLKKVVDR---KIRLTESQVKCILLQILNGLNVLH---KWYFMHRDLS 146 (335)
T ss_pred cEEEEEeccccCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccc
Confidence 789999999976 777764 234888999999999999999999 7899999985
|
|
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=115.24 Aligned_cols=110 Identities=21% Similarity=0.291 Sum_probs=92.3
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
|...+.||+|++|.||++... +++.+++|++..... ....+.+|++. .++||+ ...+..++++||+++
T Consensus 2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~ 81 (253)
T cd05122 2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSG 81 (253)
T ss_pred ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCC
Confidence 445577999999999999974 689999999977543 45678889887 889999 456778999999998
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+ .+++..+. ..++|.+...++.|++.|++||| ..+++||||+
T Consensus 82 ~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh---~~~i~h~dl~ 125 (253)
T cd05122 82 GSLKDLLKSTN--QTLTESQIAYVCKELLKGLEYLH---SNGIIHRDIK 125 (253)
T ss_pred CcHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhh---cCCEecCCCC
Confidence 8 77776532 35899999999999999999999 6899999985
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-12 Score=139.53 Aligned_cols=181 Identities=28% Similarity=0.301 Sum_probs=125.0
Q ss_pred cCCCCCcEEeeCCCCCC-eecCCc-ccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCC
Q 007553 16 TCFPNLVTFRIWGTRFL-SGRIPS-ETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKD 93 (599)
Q Consensus 16 ~~l~~L~~L~l~~~~~~-~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 93 (599)
..++.|++|-+.. +.. ...++. .|..++.|++|||++|.--+.+|..++.+-+||+|+|+++.+. .+|..+.+|+.
T Consensus 542 ~~~~~L~tLll~~-n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 542 SENPKLRTLLLQR-NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK 619 (889)
T ss_pred CCCCccceEEEee-cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence 3566899999998 641 234444 3678999999999998765689999999999999999999999 89999999999
Q ss_pred CcEEEeecCcCCccCCccccCCCcCCEEeeecccc--cccCCccccCCCcccEEecccCccCCCCcccccCCCCCCe---
Q 007553 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL--SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLST--- 168 (599)
Q Consensus 94 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i--~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~--- 168 (599)
|.+|++..+.....+|.....|++|++|.+..... ....-..+.++.+|+.+....... .+-..+..++.|..
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhH
Confidence 99999999877666677777799999999976642 222333455666666666644433 11122333344332
Q ss_pred -eecccccccccCccccCCCCCCCEEEccCCccc
Q 007553 169 -LYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 169 -L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 201 (599)
+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus 698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 222222211 23345566677777777776654
|
|
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=122.77 Aligned_cols=110 Identities=22% Similarity=0.112 Sum_probs=88.0
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC-------C-------CCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN-------S-------HTD 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n-------~-------~~~ 541 (599)
.+.|.....||+|+||.||+|.- .+|+.||+|.+.... .....+.+|+.+ .++||| . ...
T Consensus 15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 94 (353)
T cd07850 15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQ 94 (353)
T ss_pred hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccC
Confidence 35677778899999999999984 478999999986432 223467788888 999999 1 113
Q ss_pred Ccceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||++++ .+++.. .+++.+...++.|+++||+||| ..+|+||||+
T Consensus 95 ~~~lv~e~~~~~l~~~~~~-----~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlk 145 (353)
T cd07850 95 DVYLVMELMDANLCQVIQM-----DLDHERMSYLLYQMLCGIKHLH---SAGIIHRDLK 145 (353)
T ss_pred cEEEEEeccCCCHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCC
Confidence 468999999877 776653 1788899999999999999999 7799999986
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-12 Score=125.67 Aligned_cols=209 Identities=24% Similarity=0.276 Sum_probs=120.8
Q ss_pred CCCCCCCEEEcccCcCcccCC--cCCCCCCCCCEEeccCCcccccCC--ccCCCCCCCcEEEeecCcCCccCC-ccccCC
Q 007553 41 GALSRLKVLDLSYNRLTGTIP--SEIGSLRDLLELNLSYNILNGSIP--LEFGNLKDLYDLRLQGNKLDGLIP-SSIGNL 115 (599)
Q Consensus 41 ~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l 115 (599)
+++++|+...|.++.+. ..+ .....|++++.|||+.|-+....| .....|++|+.|+|+.|++..-.. ..-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45666777777666654 222 133456777777777775553221 122356777777777776642211 111245
Q ss_pred CcCCEEeeeccccccc-CCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccC-ccccCCCCCCCEE
Q 007553 116 TNLTHLDLSLNQLSGR-LPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPL-PKEVGNLKNLDSL 193 (599)
Q Consensus 116 ~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L 193 (599)
++|+.|.++.|.++-. +...+..+|+|+.|+|..|............+..|++|+|++|.+.... -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 6777777777766522 2223456677777777777533232333444667777777777665321 1345667777777
Q ss_pred EccCCccccc-Cchh-----ccCCCCCCEEeCCCCcCcccC-cccCCCCCCCCEEEccCCcCCC
Q 007553 194 LLNRNNLTGP-IPST-----IGFLNLLDELRLSHNRLDGPI-PPTIGNLTYLTSLDLSSNQLSG 250 (599)
Q Consensus 194 ~l~~n~~~~~-~~~~-----~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 250 (599)
.++.+.+.+. .|+. ....++|+.|+++.|++...- -..+..+++|+.|.+..|.++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 7777766542 1221 245567888888888875321 1234456677777777777764
|
|
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-11 Score=117.85 Aligned_cols=109 Identities=24% Similarity=0.242 Sum_probs=85.7
Q ss_pred ccceecccCCceEEEEEeC-CCCEEEEEEecCCch--hhHHHHHHhhc--ccc-ccC--------CCCCCcceeeccccc
Q 007553 487 IKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET--EELAFLETSST--DFR-HYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~-H~n--------~~~~~~~lv~e~~~~ 552 (599)
..+.||+|++|.||+|... +++.||+|++..... ......+|+.. +++ ||| ...+..++||||+.+
T Consensus 3 ~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~ 82 (283)
T cd07830 3 VIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYMEG 82 (283)
T ss_pred eheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecCCC
Confidence 3466999999999999975 578999999865432 22334556666 888 999 467788999999933
Q ss_pred c-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
. .+++.... ...++|.++..++.|+++||+||| ..+++||||+
T Consensus 83 ~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~dl~ 126 (283)
T cd07830 83 NLYQLMKDRK-GKPFSESVIRSIIYQILQGLAHIH---KHGFFHRDLK 126 (283)
T ss_pred CHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 3 77776432 235899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-11 Score=121.43 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=87.9
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC-------C------CCCCc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN-------S------HTDND 543 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n-------~------~~~~~ 543 (599)
+.|.....||+|+||.||+|.. .+|+.||||.+.... .....+.+|+.+ .++||| . .....
T Consensus 5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~ 84 (337)
T cd07858 5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV 84 (337)
T ss_pred cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence 3466667899999999999984 568999999986532 223456678877 889999 1 11347
Q ss_pred ceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|+||+.++ .+++... ..+++.+...++.||+.||.||| ..+++||||+
T Consensus 85 ~lv~e~~~~~L~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dlk 135 (337)
T cd07858 85 YIVYELMDTDLHQIIRSS---QTLSDDHCQYFLYQLLRGLKYIH---SANVLHRDLK 135 (337)
T ss_pred EEEEeCCCCCHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCC
Confidence 9999999866 7777632 34899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-11 Score=121.28 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=88.3
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC---------CCC---------
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN---------SHT--------- 540 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n---------~~~--------- 540 (599)
..|...+.||.|+||.||+|.. .+|+.||+|.+...... ...+.+|+++ .++||| ..+
T Consensus 5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 84 (342)
T cd07854 5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS 84 (342)
T ss_pred cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence 3466677899999999999985 46899999998665433 4567888888 999999 111
Q ss_pred ----CCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 ----DNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ----~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...++|+||+++. .+++... .+++.....++.||+.||.||| ..+|+||||+
T Consensus 85 ~~~~~~~~lv~e~~~~~L~~~~~~~----~l~~~~~~~~~~qi~~aL~~LH---~~givH~dik 141 (342)
T cd07854 85 LTELNSVYIVQEYMETDLANVLEQG----PLSEEHARLFMYQLLRGLKYIH---SANVLHRDLK 141 (342)
T ss_pred ccccceEEEEeecccccHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 2468999999866 7776532 3889999999999999999999 7799999985
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-11 Score=120.13 Aligned_cols=113 Identities=22% Similarity=0.287 Sum_probs=89.3
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CC--------
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SH-------- 539 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~-------- 539 (599)
.++|...+.||+|+||.||+|.. .+++.+|||++...... ...+.+|+++ .++||| ..
T Consensus 7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 86 (311)
T cd07866 7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK 86 (311)
T ss_pred cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence 45677778899999999999996 46899999998643221 2456778887 899999 11
Q ss_pred CCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 540 TDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 540 ~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
....++|+||+++. .+++... ...+++.+...++.||++||+||| ..+|+||||+
T Consensus 87 ~~~~~lv~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~l~~al~~lH---~~~i~H~dl~ 142 (311)
T cd07866 87 RGSVYMVTPYMDHDLSGLLENP--SVKLTESQIKCYMLQLLEGINYLH---ENHILHRDIK 142 (311)
T ss_pred CceEEEEEecCCcCHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 22468999999988 6666542 235899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-11 Score=119.85 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=87.5
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
|...+.+|+|+||.||+|.. .+++.+|+|.+.... ....++.+|+++ .++||| ...+..++|+||
T Consensus 17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 96 (308)
T cd06634 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY 96 (308)
T ss_pred HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEc
Confidence 44445699999999999995 468899999986421 123567888887 899999 356778999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+.++ .+++... ...+++.++..++.|++.||+||| ..+++||||+
T Consensus 97 ~~~~l~~~~~~~--~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~ 142 (308)
T cd06634 97 CLGSASDLLEVH--KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVK 142 (308)
T ss_pred cCCCHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 9866 6666532 234889999999999999999999 7899999985
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-11 Score=121.08 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=86.1
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCC------C
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHT------D 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~------~ 541 (599)
.+.|.....||+|+||.||+|.. .+|..||||++..... ....+.+|+.+ .++||| ... .
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 93 (343)
T cd07880 14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFH 93 (343)
T ss_pred ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccc
Confidence 34566677899999999999984 5789999999854321 13457788888 999999 111 2
Q ss_pred Ccceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+.+. .+++.. ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 94 ~~~lv~e~~~~~l~~~~~~----~~l~~~~~~~i~~qi~~al~~LH---~~gi~H~dlk 145 (343)
T cd07880 94 DFYLVMPFMGTDLGKLMKH----EKLSEDRIQFLVYQMLKGLKYIH---AAGIIHRDLK 145 (343)
T ss_pred eEEEEEecCCCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 348999999433 666553 24899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-12 Score=126.76 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=86.6
Q ss_pred eecccCCceEEEEEeCC-CCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccccc--cc
Q 007553 490 CIGTGGYGSVYRAQLSS-GRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--EH 555 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~-g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~~ 555 (599)
.+|.|.||.||++.-++ +...|.|.+...+.+ -..|+-||++ .++||+ +-.+.+||..|||+|| +.
T Consensus 39 ELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDa 118 (1187)
T KOG0579|consen 39 ELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDA 118 (1187)
T ss_pred hhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHhH
Confidence 37899999999998653 455678888776554 4679999998 999999 6788899999999999 33
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 556 FLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 556 ~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+-. -+.+|+..++..+|.|+..||.||| +..|||||||
T Consensus 119 imlE--L~r~LtE~QIqvvc~q~ldALn~LH---s~~iIHRDLK 157 (1187)
T KOG0579|consen 119 IMLE--LGRVLTEDQIQVVCYQVLDALNWLH---SQNIIHRDLK 157 (1187)
T ss_pred HHHH--hccccchHHHHHHHHHHHHHHHHHh---hcchhhhhcc
Confidence 3322 2346999999999999999999999 8999999996
|
|
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-11 Score=117.68 Aligned_cols=107 Identities=22% Similarity=0.215 Sum_probs=88.8
Q ss_pred cceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 488 KYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
...||+|++|.||+|... +++.||+|.+..... ....+..|+.+ +++||| ...+..++|+||++++
T Consensus 4 ~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~ 83 (282)
T cd07829 4 LEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCDMD 83 (282)
T ss_pred ehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcCcC
Confidence 456999999999999964 589999999876431 13567788887 889999 4567899999999977
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... ..+++.++..++.|+++||+||| ..+|+||||+
T Consensus 84 l~~~i~~~~--~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~~l~ 125 (282)
T cd07829 84 LKKYLDKRP--GPLSPNLIKSIMYQLLRGLAYCH---SHRILHRDLK 125 (282)
T ss_pred HHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 88887532 35899999999999999999999 7799999985
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-11 Score=118.31 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=85.9
Q ss_pred hhccccceecccCCceEEEEEeCC-CCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSS-GRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~-g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~e 548 (599)
++|.....+|+|+||.||+|...+ |+.||||.+..... ...++..|+.+ +. .||| ......++|||
T Consensus 15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e 94 (296)
T cd06618 15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICME 94 (296)
T ss_pred chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEee
Confidence 345556789999999999999864 89999999975432 23456667664 44 5999 46677899999
Q ss_pred ccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++. .++.... ...++|.++..++.||++||+|||+ ..+|+||||+
T Consensus 95 ~~~~~l~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~--~~~i~H~dl~ 142 (296)
T cd06618 95 LMSTCLDKLLKRI--QGPIPEDILGKMTVAIVKALHYLKE--KHGVIHRDVK 142 (296)
T ss_pred ccCcCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHh--hCCEecCCCc
Confidence 99765 4444432 2358999999999999999999993 2589999985
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-11 Score=117.63 Aligned_cols=109 Identities=27% Similarity=0.298 Sum_probs=84.9
Q ss_pred ccceecccCCceEEEEEeC-CCCEEEEEEecCCchh---hHHHHHHhhc-----cccccC--------CCCCC-----cc
Q 007553 487 IKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE---ELAFLETSST-----DFRHYN--------SHTDN-----DD 544 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~---~~~f~~e~~~-----~l~H~n--------~~~~~-----~~ 544 (599)
..+.||+|+||.||+|... +++.||+|++...... ...+.+|+.+ .++||| ...+. .+
T Consensus 3 ~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~ 82 (287)
T cd07838 3 ELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLT 82 (287)
T ss_pred EEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeE
Confidence 4567999999999999975 4899999999753222 3446667654 557999 23333 88
Q ss_pred eeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|||+++. .+++.... ...++|.+...++.||++||+||| ..+++||||+
T Consensus 83 l~~e~~~~~l~~~l~~~~-~~~l~~~~~~~~~~~i~~al~~LH---~~~i~h~~l~ 134 (287)
T cd07838 83 LVFEHVDQDLATYLSKCP-KPGLPPETIKDLMRQLLRGVDFLH---SHRIVHRDLK 134 (287)
T ss_pred EEehhcccCHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCC
Confidence 999999977 77776432 235899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-11 Score=116.27 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=83.6
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCc------hhhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE------TEELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~------~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
|.....||+|+||.||++... .+..+++|.++... .+...+..|+.+ .++||| ...+..++||
T Consensus 2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (260)
T cd08222 2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIIT 81 (260)
T ss_pred ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEE
Confidence 334567999999999999853 34445555543311 123346667766 999999 4566789999
Q ss_pred cccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .++++.. .....++|.++..++.|+++|+.||| ..+++||||+
T Consensus 82 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~~l~ 133 (260)
T cd08222 82 EYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMH---QRRILHRDLK 133 (260)
T ss_pred EeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHH---HcCccccCCC
Confidence 999999 6666542 23356899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-11 Score=120.10 Aligned_cols=109 Identities=22% Similarity=0.273 Sum_probs=89.0
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCC-----CCcce
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHT-----DNDDS 545 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~-----~~~~l 545 (599)
|.....||+|++|.||+|... +|+.||||++..... ....+.+|+++ .++||| ... ...++
T Consensus 2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~l 81 (330)
T cd07834 2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYI 81 (330)
T ss_pred ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEE
Confidence 444567999999999999964 589999999876432 24568888888 899999 222 36799
Q ss_pred eecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||++++ .+++... ..+++.....++.|+++||+||| ..+|+||||+
T Consensus 82 v~e~~~~~l~~~l~~~---~~l~~~~~~~i~~~l~~~l~~LH---~~gi~H~dlk 130 (330)
T cd07834 82 VTELMETDLHKVIKSP---QPLTDDHIQYFLYQILRGLKYLH---SANVIHRDLK 130 (330)
T ss_pred EecchhhhHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 99999977 7777742 26899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.8e-11 Score=116.65 Aligned_cols=107 Identities=21% Similarity=0.195 Sum_probs=88.5
Q ss_pred cceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 488 KYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
...||+|++|.||+|.. .+|+.+|+|++...... ...+.+|+.+ +++||+ ..++..++|+||+++.
T Consensus 4 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~ 83 (283)
T cd05118 4 LGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDTD 83 (283)
T ss_pred ceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccCCC
Confidence 35699999999999986 46899999998654322 4567778877 889999 4667889999999977
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++..+. ..+++.++..++.||+.|++||| ..+|+||||+
T Consensus 84 l~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~ 125 (283)
T cd05118 84 LYKLIKDRQ--RGLPESLIKSYLYQLLQGLAFCH---SHGILHRDLK 125 (283)
T ss_pred HHHHHHhhc--ccCCHHHHHHHHHHHHHHHHHHH---HCCeeecCcC
Confidence 77776532 35899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.1e-11 Score=127.00 Aligned_cols=113 Identities=36% Similarity=0.578 Sum_probs=102.6
Q ss_pred CCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCC
Q 007553 261 YLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLS 340 (599)
Q Consensus 261 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 340 (599)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCcccCCC-CCCCEEECCCCcCcccCC
Q 007553 341 HNFINGTIPSQLGKI-PNVSEVDVSKNNLSGVIP 373 (599)
Q Consensus 341 ~n~l~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~ 373 (599)
+|++++.+|..+... ..+..+++.+|...|..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999887654 467789999998665444
|
|
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.9e-11 Score=113.77 Aligned_cols=103 Identities=18% Similarity=0.160 Sum_probs=86.3
Q ss_pred ecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--
Q 007553 491 IGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN-- 553 (599)
Q Consensus 491 lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G-- 553 (599)
||+|+||.||++... +++.+|+|.+..... ....+..|+.+ .++||| ..++..++||||+++|
T Consensus 1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L 80 (250)
T cd05123 1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL 80 (250)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence 689999999999964 589999999866432 23467788877 999999 4667789999999988
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++.+...++.|++.|+.||| ..+++|+||+
T Consensus 81 ~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lh---~~~~~H~~l~ 120 (250)
T cd05123 81 FSHLSKE---GRFSEERARFYAAEIVLALEYLH---SLGIIYRDLK 120 (250)
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCC
Confidence 7888743 24899999999999999999999 7999999985
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-11 Score=129.45 Aligned_cols=108 Identities=21% Similarity=0.194 Sum_probs=89.4
Q ss_pred cceecccCCceEEEEEeC----C----CCEEEEEEecCCch--hhHHHHHHhhc---cccccC--------CCCCCccee
Q 007553 488 KYCIGTGGYGSVYRAQLS----S----GRVVALKKLHRSET--EELAFLETSST---DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~----~----g~~vavK~l~~~~~--~~~~f~~e~~~---~l~H~n--------~~~~~~~lv 546 (599)
...+|+|.||.|++|.+. . ...||||.++.... +...+..|+++ ..+||| ..+.+.++|
T Consensus 301 ~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v 380 (609)
T KOG0200|consen 301 GKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVI 380 (609)
T ss_pred cceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEE
Confidence 347999999999999852 1 45799999976543 35679999988 668999 457889999
Q ss_pred ecccccc--cccccCCC-------CC------CCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 547 DEHLANN--EHFLSAPE-------NY------ERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~-------~~------~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
+||+++| .+||+.++ .+ ..++-.+.+.+|.|||+||+||+ ..+++||||
T Consensus 381 ~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~---~~~~vHRDL 444 (609)
T KOG0200|consen 381 VEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLA---SVPCVHRDL 444 (609)
T ss_pred EEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHh---hCCccchhh
Confidence 9999999 88998654 00 23888999999999999999999 899999998
|
|
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-11 Score=119.36 Aligned_cols=104 Identities=12% Similarity=0.009 Sum_probs=81.6
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--cc
Q 007553 491 IGTGGYGSVYRAQLSSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--EH 555 (599)
Q Consensus 491 lg~g~~g~v~~~~~~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~~ 555 (599)
.|.|+++.||++.. +|+.||||++.... .....+.+|+.+ .++||| ...+..+++|||+++| .+
T Consensus 10 ~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~ 88 (314)
T cd08216 10 FEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCED 88 (314)
T ss_pred hcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHH
Confidence 34455555566555 69999999986541 224578889888 899999 4567789999999999 77
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 556 FLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 556 ~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++.... ...+++.....++.|+++||+||| ..+|+||||+
T Consensus 89 ~l~~~~-~~~~~~~~~~~~~~~l~~~L~~LH---~~~ivH~dlk 128 (314)
T cd08216 89 LLKTHF-PEGLPELAIAFILKDVLNALDYIH---SKGFIHRSVK 128 (314)
T ss_pred HHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 887532 234788889999999999999999 7899999985
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.3e-13 Score=117.79 Aligned_cols=105 Identities=13% Similarity=0.092 Sum_probs=84.6
Q ss_pred cceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 488 KYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
...||+|.|+.||++.. +.|+.+|+|++.... ...++..+|+++ .++||| .+....+||+|+|++|
T Consensus 16 ~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~ 95 (355)
T KOG0033|consen 16 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGG 95 (355)
T ss_pred HHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEecccch
Confidence 34599999999998874 578999998875432 224567789999 999999 4567789999999999
Q ss_pred ---cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 ---EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ---~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+.++. ...+.+..-....||..|+.|.| ..+|||||++
T Consensus 96 dl~~eIV~R----~~ySEa~aSH~~rQiLeal~yCH---~n~IvHRDvk 137 (355)
T KOG0033|consen 96 ELFEDIVAR----EFYSEADASHCIQQILEALAYCH---SNGIVHRDLK 137 (355)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---hcCceeccCC
Confidence 665553 23466777788899999999999 8999999986
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.6e-12 Score=114.68 Aligned_cols=129 Identities=29% Similarity=0.331 Sum_probs=59.3
Q ss_pred CCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEec
Q 007553 188 KNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267 (599)
Q Consensus 188 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 267 (599)
..|+++|+++|.|+ .+.++..-.+.++.|+++.|.+... ..+..+++|+.|||++|.++ .+..|-.++-+++.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 34455555555444 3333444444555555555554422 12444455555555555444 22233333444444444
Q ss_pred cCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCC-CccccCCCCCCEEeCCCccccc
Q 007553 268 DRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSI-PSEIGNLIHLRQLDLSHNFING 346 (599)
Q Consensus 268 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 346 (599)
+.|. +... ..+..+-+|..||+++|++.... -..++++|.|+++.+.+|.+.+
T Consensus 360 a~N~------------------------iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNK------------------------IETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhh------------------------Hhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 4444 4321 22333344445555555443211 1245566666666666666663
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-12 Score=121.79 Aligned_cols=190 Identities=21% Similarity=0.232 Sum_probs=94.8
Q ss_pred cccCCCcccEEecccCccCCCCc----ccccCCCCCCeeecccccccccC-------------ccccCCCCCCCEEEccC
Q 007553 135 EVGNLKNLVSLFLDNNNLTGPIP----STLYHLNQLSTLYLAYNNLVGPL-------------PKEVGNLKNLDSLLLNR 197 (599)
Q Consensus 135 ~l~~l~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~~~~~-------------~~~l~~l~~L~~L~l~~ 197 (599)
++.++++|++|+||.|.+....+ +.+.++..|++|+|.+|.+...- ......-+.|+++..+.
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 34566677777777776654322 23455677888888777654211 11223345566666666
Q ss_pred Cccccc----CchhccCCCCCCEEeCCCCcCccc----CcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccC
Q 007553 198 NNLTGP----IPSTIGFLNLLDELRLSHNRLDGP----IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDR 269 (599)
Q Consensus 198 n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 269 (599)
|.+... +...|...+.|+.+.++.|.+... +...|..+++|+.|||..|.++.....
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--------------- 231 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--------------- 231 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---------------
Confidence 655421 122344445555555555554421 122344455555555555554422110
Q ss_pred cceeecCCcCccCCCCCCEEECCCCCCccCCCccC-----cCCCCCCEEEcccCcCccC----CCccccCCCCCCEEeCC
Q 007553 270 NNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPEL-----MNCSQLQNLAVNHNSLSGS----IPSEIGNLIHLRQLDLS 340 (599)
Q Consensus 270 n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~ 340 (599)
.+...+..++.|+.|++++|.+...-..++ ...|+|+.|.+.+|.++.. +...+...+.|..|+|+
T Consensus 232 -----~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 232 -----ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred -----HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 112223334455555555555543322111 2345666666666665421 12223345667777777
Q ss_pred Cccc
Q 007553 341 HNFI 344 (599)
Q Consensus 341 ~n~l 344 (599)
+|.+
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 7776
|
|
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.9e-12 Score=113.74 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=86.5
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC-------------CCCCCcce
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN-------------SHTDNDDS 545 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n-------------~~~~~~~l 545 (599)
..+.+.||.|.||.||..+- ++|+.||.|++..--.. ...+.+|+++ .++|.| .--+++|+
T Consensus 55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV 134 (449)
T KOG0664|consen 55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYV 134 (449)
T ss_pred CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHH
Confidence 34466799999999998874 57999999988543222 4568889988 899999 11256789
Q ss_pred eecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+|.|... ++.+-. ...++-....-+.-||.+||.||| +.+|+|||||
T Consensus 135 ~TELmQSDLHKIIVS---PQ~Ls~DHvKVFlYQILRGLKYLH---sA~ILHRDIK 183 (449)
T KOG0664|consen 135 LTELMQSDLHKIIVS---PQALTPDHVKVFVYQILRGLKYLH---TANILHRDIK 183 (449)
T ss_pred HHHHHHhhhhheecc---CCCCCcchhhhhHHHHHhhhHHHh---hcchhhccCC
Confidence 99999999 777663 224666677788899999999999 8999999997
|
|
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.3e-11 Score=119.70 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=93.4
Q ss_pred hccccceecccCCceEEEEE-eCCCCEEEEEEecCCchhhHHHHHHhhc--ccc-ccC-------------CCCCCccee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLETSST--DFR-HYN-------------SHTDNDDSS 546 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~-H~n-------------~~~~~~~lv 546 (599)
.|.....||+|.||+|.||. ..+++.||||+++....--.+-..|+.+ .++ |.+ ..++.+++|
T Consensus 187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciV 266 (586)
T KOG0667|consen 187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIV 266 (586)
T ss_pred EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeee
Confidence 34556789999999999998 5579999999998765544555667777 666 655 567889999
Q ss_pred ecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|.+..- ++|+...+ ...++......|+.||+.||.+|| +.+|||-|||
T Consensus 267 fELL~~NLYellK~n~-f~Glsl~~ir~~~~Qil~~L~~L~---~l~IIHcDLK 316 (586)
T KOG0667|consen 267 FELLSTNLYELLKNNK-FRGLSLPLVRKFAQQILTALLFLH---ELGIIHCDLK 316 (586)
T ss_pred ehhhhhhHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCC
Confidence 9999999 99998632 345889999999999999999999 9999999997
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-11 Score=107.18 Aligned_cols=107 Identities=30% Similarity=0.399 Sum_probs=30.7
Q ss_pred CCCCCCEEEcccCcCcccCCcCCC-CCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccc-cCCCcCC
Q 007553 42 ALSRLKVLDLSYNRLTGTIPSEIG-SLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSI-GNLTNLT 119 (599)
Q Consensus 42 ~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~ 119 (599)
++.+++.|+|.+|.|+ .+. .++ .+.+|+.|+|++|.++.. + .+..+++|++|++++|++++. ...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 3446677777777776 332 344 466777777777777643 2 356667777777777777643 2233 3466777
Q ss_pred EEeeecccccccC-CccccCCCcccEEecccCccC
Q 007553 120 HLDLSLNQLSGRL-PQEVGNLKNLVSLFLDNNNLT 153 (599)
Q Consensus 120 ~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~i~ 153 (599)
+|++++|+|.... -..+..+++|++|++.+|.++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 7777777665321 133555666666666666555
|
|
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.7e-11 Score=116.16 Aligned_cols=112 Identities=16% Similarity=0.096 Sum_probs=85.1
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc--hhhHHHHHHhhc--ccc-ccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE--TEELAFLETSST--DFR-HYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~-H~n--------~~~~~~~lv~e~~ 550 (599)
|.....||+|+||.||++.. .+|+.||+|++.... .....+.+|+.+ ++. ||| ..++..++||||+
T Consensus 6 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~ 85 (288)
T cd06616 6 LKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELM 85 (288)
T ss_pred hHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecc
Confidence 34455699999999999985 468999999987543 224567888876 775 999 4566788999999
Q ss_pred ccc-ccc---ccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHF---LSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~---l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+.. .++ +... ....+++.....++.|+++||+|||+ ..+|+||||+
T Consensus 86 ~~~l~~l~~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~lh~--~~~i~H~dlk 135 (288)
T cd06616 86 DISLDKFYKYVYEV-LKSVIPEEILGKIAVATVKALNYLKE--ELKIIHRDVK 135 (288)
T ss_pred cCCHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHhh--cCCeeccCCC
Confidence 876 332 2221 22458999999999999999999994 2489999986
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-11 Score=107.48 Aligned_cols=108 Identities=32% Similarity=0.395 Sum_probs=26.0
Q ss_pred CCCCCCCEEeccCCcccccCCccCC-CCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccc-cCCCcc
Q 007553 65 GSLRDLLELNLSYNILNGSIPLEFG-NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNL 142 (599)
Q Consensus 65 ~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~L 142 (599)
.+..++++|+|++|.|+.. ..++ .+.+|+.|++++|++... ..+..+++|++|++++|.|+.. .+.+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence 3444566666666666532 1233 355666666666666643 2455566666666666666533 2222 245566
Q ss_pred cEEecccCccCCCCc-ccccCCCCCCeeeccccccc
Q 007553 143 VSLFLDNNNLTGPIP-STLYHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 143 ~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~ 177 (599)
++|++++|+|...-. ..+..+++|+.|++.+|.+.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666665543211 22334444455555444443
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-11 Score=129.95 Aligned_cols=59 Identities=27% Similarity=0.392 Sum_probs=47.8
Q ss_pred HHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC
Q 007553 479 IQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN 537 (599)
Q Consensus 479 ~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n 537 (599)
.+...+|.+-..+|+|+||.||+++= =||+.+|||++.....+ -....+|+.+ +++|||
T Consensus 475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpN 538 (1351)
T KOG1035|consen 475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPN 538 (1351)
T ss_pred hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcc
Confidence 44556777778899999999999983 38999999999766432 4567789998 999999
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.3e-12 Score=120.35 Aligned_cols=39 Identities=21% Similarity=0.421 Sum_probs=16.3
Q ss_pred CCCCCEEEcccCcCccC-CCccccCCCCCCEEeCCCcccc
Q 007553 307 CSQLQNLAVNHNSLSGS-IPSEIGNLIHLRQLDLSHNFIN 345 (599)
Q Consensus 307 l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 345 (599)
+++|+.|+++.|++..- .-..+..+++|+.|.+..|.++
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 34444555554444210 0112233344555555555554
|
|
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=117.43 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=88.1
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCC------
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTD------ 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~------ 541 (599)
.++|.....||+|++|.||+|... +++.||||++.... .....+.+|+.+ .++||| ...+
T Consensus 14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 93 (343)
T cd07851 14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQ 93 (343)
T ss_pred cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccc
Confidence 445666788999999999999964 68899999986532 123557778887 999999 2222
Q ss_pred Ccceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++|+||+.+. .+++.. ..+++.+...++.|+++||+||| ..+|+||||+
T Consensus 94 ~~~lv~e~~~~~L~~~~~~----~~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlk 145 (343)
T cd07851 94 DVYLVTHLMGADLNNIVKC----QKLSDDHIQFLVYQILRGLKYIH---SAGIIHRDLK 145 (343)
T ss_pred cEEEEEecCCCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 378999999544 777764 24899999999999999999999 7899999985
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.1e-11 Score=119.89 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=84.0
Q ss_pred ceecccCCceEEEEE-eCCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccccc--c
Q 007553 489 YCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--E 554 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~ 554 (599)
-++|+|.||+||.|+ .++...+|||.+...... .+-.-+||.+ .++|.| ..+...-+.||-+||| .
T Consensus 581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLS 660 (1226)
T KOG4279|consen 581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLS 660 (1226)
T ss_pred EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHH
Confidence 369999999999999 445667899999765433 4557789999 999999 4555667889999999 8
Q ss_pred ccccCCCCCCCC--ChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 555 HFLSAPENYERV--DFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 555 ~~l~~~~~~~~l--~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..|+.+=+ ++ +..+.--...||.+||.||| ...|||||||
T Consensus 661 sLLrskWG--PlKDNEstm~fYtkQILeGLkYLH---en~IVHRDIK 702 (1226)
T KOG4279|consen 661 SLLRSKWG--PLKDNESTMNFYTKQILEGLKYLH---ENKIVHRDIK 702 (1226)
T ss_pred HHHHhccC--CCccchhHHHHHHHHHHHHhhhhh---hcceeecccc
Confidence 88875322 23 44556667789999999999 8999999997
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-11 Score=113.34 Aligned_cols=206 Identities=18% Similarity=0.164 Sum_probs=122.0
Q ss_pred CccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecc-cCccCCCCcccccCC
Q 007553 85 PLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLD-NNNLTGPIPSTLYHL 163 (599)
Q Consensus 85 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~-~n~i~~~~~~~l~~l 163 (599)
|..+.-+++|+.+.++.|.-.. +.+-...-|.|+++......++.. | .+--.+.+.-..-+ ..-..|........+
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred ccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccccc-c-cccchhhhcCccCCCCCccCCceEEecchH
Confidence 3334445666777777664332 112222336677777766655422 1 11111111111111 111122222334456
Q ss_pred CCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEc
Q 007553 164 NQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDL 243 (599)
Q Consensus 164 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 243 (599)
..|++++|++|.|+. +.+++.-.|.++.|+++.|.+... ..+..+.+|+.|+|++|.++ .+..+-..+-+++.|.|
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 678889999998874 456777788999999999988743 23778889999999999887 33344566778899999
Q ss_pred cCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCcc
Q 007553 244 SSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322 (599)
Q Consensus 244 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 322 (599)
++|.+.. .+.+.++.+|..|++++|+|... . -...++++|.|+.+.|.+|++.+
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~l-d----------------------eV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEEL-D----------------------EVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhH-H----------------------HhcccccccHHHHHhhcCCCccc
Confidence 9998863 24456666666666666665421 0 11234556666666666776663
|
|
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-10 Score=116.37 Aligned_cols=109 Identities=18% Similarity=0.177 Sum_probs=84.5
Q ss_pred ccccceecccCCceEEEEEeC-C--CCEEEEEEecCCch---hhHHHHHHhhc--cc-cccC----C--------CCCCc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-S--GRVVALKKLHRSET---EELAFLETSST--DF-RHYN----S--------HTDND 543 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~--g~~vavK~l~~~~~---~~~~f~~e~~~--~l-~H~n----~--------~~~~~ 543 (599)
|.....||+|+||.||++... . +..||+|++..... ....+.+|+.+ ++ +||| . .....
T Consensus 2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~ 81 (332)
T cd07857 2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNEL 81 (332)
T ss_pred ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcE
Confidence 444567999999999999964 3 77999999864321 13567788887 67 5999 1 11346
Q ss_pred ceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++||+.+. .+++.. ...+++.+...++.||++||+||| ..+|+||||+
T Consensus 82 ~~~~e~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH---~~givH~dlk 132 (332)
T cd07857 82 YLYEELMEADLHQIIRS---GQPLTDAHFQSFIYQILCGLKYIH---SANVLHRDLK 132 (332)
T ss_pred EEEEecccCCHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 7889999877 777763 235899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=124.47 Aligned_cols=115 Identities=16% Similarity=0.087 Sum_probs=78.2
Q ss_pred HhhhccccceecccCCceEEEEEeC-C----CCEEEEEEecCCchhhHHHHHHhhc------------cccccC--CCCC
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLS-S----GRVVALKKLHRSETEELAFLETSST------------DFRHYN--SHTD 541 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~-~----g~~vavK~l~~~~~~~~~f~~e~~~------------~l~H~n--~~~~ 541 (599)
..++|...+.||+|+||.||+|+.. + +..||||++...... ..+..|... .+.++. ..++
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~-e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAV-EIWMNERVRRACPNSCADFVYGFLEPVSSKKED 208 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchh-HHHHHHHHHhhchhhHHHHHHhhhcccccccCC
Confidence 4567888899999999999999974 4 689999998643221 111111110 111111 3456
Q ss_pred Ccceeecccccc--cccccCCCC-----------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAPEN-----------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~~-----------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++| .++++.+.. .....+.....|+.||++||+||| ..+|+|||||
T Consensus 209 ~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH---~~gIiHRDLK 282 (566)
T PLN03225 209 EYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH---STGIVHRDVK 282 (566)
T ss_pred ceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH---HCCEEeCcCC
Confidence 789999999999 777764210 001112335679999999999999 7899999997
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-12 Score=120.16 Aligned_cols=186 Identities=23% Similarity=0.239 Sum_probs=88.3
Q ss_pred CCCCCCCEEEcccCcCcc----cCCcCCCCCCCCCEEeccCC---cccccCCcc-------CCCCCCCcEEEeecCcCCc
Q 007553 41 GALSRLKVLDLSYNRLTG----TIPSEIGSLRDLLELNLSYN---ILNGSIPLE-------FGNLKDLYDLRLQGNKLDG 106 (599)
Q Consensus 41 ~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n---~~~~~~p~~-------~~~l~~L~~L~L~~n~~~~ 106 (599)
..+..+..++|++|.+-. .+...+...+.|+.-++++- .....+|.+ +-+.++|++|+||.|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 344555556666665531 12223344455555555542 111122222 2344556666666665543
Q ss_pred cCCcc----ccCCCcCCEEeeecccccccCCc-------------cccCCCcccEEecccCccCCC----CcccccCCCC
Q 007553 107 LIPSS----IGNLTNLTHLDLSLNQLSGRLPQ-------------EVGNLKNLVSLFLDNNNLTGP----IPSTLYHLNQ 165 (599)
Q Consensus 107 ~~~~~----~~~l~~L~~L~l~~n~i~~~~~~-------------~l~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~ 165 (599)
..+.. +.++..|++|.|.+|.+.-.-.. ....-++|+++...+|++... ++..|...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 32222 23455566666666654421111 122345666666666655432 2234555566
Q ss_pred CCeeecccccccc----cCccccCCCCCCCEEEccCCcccc----cCchhccCCCCCCEEeCCCCcCcc
Q 007553 166 LSTLYLAYNNLVG----PLPKEVGNLKNLDSLLLNRNNLTG----PIPSTIGFLNLLDELRLSHNRLDG 226 (599)
Q Consensus 166 L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~ 226 (599)
|+.+.+..|.|.. .....+..+++|+.||+.+|.++. .+...+..++.|+.|++++|.+..
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 6666666665532 122345555666666666665542 122334445555555555555543
|
|
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-11 Score=126.05 Aligned_cols=115 Identities=11% Similarity=0.145 Sum_probs=80.9
Q ss_pred hhhccccceecccCCceEEEEEeCC--CCEEEEE------------------EecCCchhhHHHHHHhhc--cccccC--
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSS--GRVVALK------------------KLHRSETEELAFLETSST--DFRHYN-- 537 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~--g~~vavK------------------~l~~~~~~~~~f~~e~~~--~l~H~n-- 537 (599)
..+|.....||+|+||.||++..+. +...++| .+.........+.+|+.+ .++|||
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv 226 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL 226 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence 4567778889999999999987532 2222222 111111223467889888 999999
Q ss_pred ------CCCCCcceeecccccc-cccccCCCC--CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 ------SHTDNDDSSDEHLANN-EHFLSAPEN--YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ------~~~~~~~lv~e~~~~G-~~~l~~~~~--~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+..++|+||+.+. .+++..... .......+...|+.||+.||+||| ..+|+|||||
T Consensus 227 ~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH---~~gIiHrDLK 294 (501)
T PHA03210 227 KIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIH---DKKLIHRDIK 294 (501)
T ss_pred cEeEEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 3566789999999877 666653210 112335567789999999999999 7899999996
|
|
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-10 Score=110.11 Aligned_cols=96 Identities=15% Similarity=-0.014 Sum_probs=76.7
Q ss_pred cCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--cccccCC
Q 007553 494 GGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--EHFLSAP 560 (599)
Q Consensus 494 g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~~~l~~~ 560 (599)
|.+|.||++.- .+|+.+|+|++..... +.+|... ...||| ...+..++||||+++| .+++...
T Consensus 4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 79 (237)
T cd05576 4 GVIDKVLLVMDTRTQQTFILKGLRKSSE----YSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKF 79 (237)
T ss_pred cccceEEEEEEccCCcEEEEEeecchhh----hhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHh
Confidence 78999999984 5789999999976432 2223222 566888 4567789999999999 7777642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 561 ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 561 ~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..+++.....++.|+++||+||| ..+|+||||+
T Consensus 80 ---~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlk 112 (237)
T cd05576 80 ---LNIPEECVKRWAAEMVVALDALH---REGIVCRDLN 112 (237)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence 24899999999999999999999 7899999986
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-10 Score=114.08 Aligned_cols=107 Identities=19% Similarity=0.258 Sum_probs=86.9
Q ss_pred cceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 488 KYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
++++|+|.||+||-|.. ++|+.||||.+++.. .++....+|+.+ .++||. ...+..++|||-+.+.
T Consensus 569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GD 648 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGD 648 (888)
T ss_pred HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcch
Confidence 46799999999999996 479999999997653 235667889998 999998 5677789999999988
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+-.|...+++ |....-.=+..||..||.||| .+.|+|-|||
T Consensus 649 MLEMILSsEkgR--L~er~TkFlvtQIL~ALr~LH---~knIvHCDLK 691 (888)
T KOG4236|consen 649 MLEMILSSEKGR--LPERITKFLVTQILVALRYLH---FKNIVHCDLK 691 (888)
T ss_pred HHHHHHHhhccc--chHHHHHHHHHHHHHHHHHhh---hcceeeccCC
Confidence 6566644333 655555557789999999999 8999999997
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-11 Score=127.50 Aligned_cols=246 Identities=30% Similarity=0.345 Sum_probs=143.5
Q ss_pred CCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEE
Q 007553 66 SLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSL 145 (599)
Q Consensus 66 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 145 (599)
.+..++.+++..|.+.. +-..+..+.+|+.|++.+|++..+ ...+..+++|++|++++|.|+... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 44556666666666653 223355666777777777776643 222566677777777777776442 35566667777
Q ss_pred ecccCccCCCCcccccCCCCCCeeecccccccccCc-cccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcC
Q 007553 146 FLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLP-KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRL 224 (599)
Q Consensus 146 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 224 (599)
++++|.|+.. +.+..++.|+.+++++|.+....+ . ...+.+++.+++..|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 7777776643 345556677777777777665433 1 35566777777777766522 2233334444456666666
Q ss_pred cccCcccCCCCCC--CCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccC---
Q 007553 225 DGPIPPTIGNLTY--LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSS--- 299 (599)
Q Consensus 225 ~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~--- 299 (599)
...- .+..+.. |+.+++++|.+.. .+..+..+..+..|++.+|.+... ..+...+.+..+....|.+...
T Consensus 221 ~~~~--~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 SKLE--GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eecc--CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence 5321 2222333 6777777777763 334566677777788877776543 2233345566666666655422
Q ss_pred CCcc-CcCCCCCCEEEcccCcCccCCC
Q 007553 300 IPPE-LMNCSQLQNLAVNHNSLSGSIP 325 (599)
Q Consensus 300 ~~~~-~~~l~~L~~L~l~~n~l~~~~~ 325 (599)
.... ....+.+....+..|.+....+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hccccccccccccccccccCccccccc
Confidence 1111 3455677778888887765433
|
|
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-10 Score=105.94 Aligned_cols=109 Identities=17% Similarity=0.082 Sum_probs=78.3
Q ss_pred ccccceecccCCceEEEEE--eCCCCEEEEEEecCCchh-------------------------hHHHHHHhhc--cccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQ--LSSGRVVALKKLHRSETE-------------------------ELAFLETSST--DFRH 535 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~--~~~g~~vavK~l~~~~~~-------------------------~~~f~~e~~~--~l~H 535 (599)
|.....||+|++|.||+|. ..+|+.||||.+.....+ ...+..|+.. ++.|
T Consensus 30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~ 109 (237)
T smart00090 30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYE 109 (237)
T ss_pred HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4445679999999999998 568999999998653210 0124457666 6655
Q ss_pred cC------CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcc-ccccccC
Q 007553 536 YN------SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRK-SYYQRLY 599 (599)
Q Consensus 536 ~n------~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~-i~Hrdl~ 599 (599)
.. ......++||||++++ ..+.... ...+..+...++.||+.|++||| ..+ |+||||+
T Consensus 110 ~~i~~p~~~~~~~~~lV~E~~~g~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~LH---~~g~iiH~Dik 176 (237)
T smart00090 110 AGVPVPKPIAWRRNVLVMEFIGGDGLPAPRLKD---VEPEEEEEFELYDDILEEMRKLY---KEGELVHGDLS 176 (237)
T ss_pred cCCCCCeeeEecCceEEEEEecCCccccccccc---CCcchHHHHHHHHHHHHHHHHHH---hcCCEEeCCCC
Confidence 33 2233468999999998 4443221 23555667899999999999999 778 9999986
|
|
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-11 Score=130.10 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=89.6
Q ss_pred hccccceecccCCceEEEEE-eCCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
.++..+.||.|.||.||-|. .++|+..|||.+...... ....-+|..+ .++||| .+++..++.|||
T Consensus 1236 rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEy 1315 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEY 1315 (1509)
T ss_pred eeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHH
Confidence 45566789999999999888 678999999988665433 2456677777 999999 688999999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|++| ++.++..+ ..+...-..+-.|++.|++||| ..+|||||+|
T Consensus 1316 C~~GsLa~ll~~gr---i~dE~vt~vyt~qll~gla~LH---~~gIVHRDIK 1361 (1509)
T KOG4645|consen 1316 CEGGSLASLLEHGR---IEDEMVTRVYTKQLLEGLAYLH---EHGIVHRDIK 1361 (1509)
T ss_pred hccCcHHHHHHhcc---hhhhhHHHHHHHHHHHHHHHHH---hcCceecCCC
Confidence 9999 77777422 2566666677889999999999 8899999986
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-10 Score=110.33 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=88.0
Q ss_pred hccccceecccCCceEEEEE-eCCCCEEEEEEecCCchhhHHHHHHhhc--cc-----cccC---------------CCC
Q 007553 484 DFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLETSST--DF-----RHYN---------------SHT 540 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-----~H~n---------------~~~ 540 (599)
.|...+.||-|.|.+||.+. ..+.+.||+|+.+...-..+.-++||++ .+ +|++ ..+
T Consensus 79 RY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG 158 (590)
T KOG1290|consen 79 RYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNG 158 (590)
T ss_pred eEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCC
Confidence 35556789999999999998 4567899999987654445667778876 21 3555 567
Q ss_pred CCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+||+||.-.- -.++.. .....+......+||.||..||.|||..| +|||=|||
T Consensus 159 ~HVCMVfEvLGdnLLklI~~-s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlK 215 (590)
T KOG1290|consen 159 QHVCMVFEVLGDNLLKLIKY-SNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLK 215 (590)
T ss_pred cEEEEEehhhhhHHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCC
Confidence 8889999998766 555553 33455888999999999999999999755 99999997
|
|
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-10 Score=113.18 Aligned_cols=108 Identities=13% Similarity=0.063 Sum_probs=88.3
Q ss_pred ccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 487 IKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
.+..||+|.|++|-.++. -.|..||||.++....+ .....+|++- -.+||| ..-..+|+|.|.=.+
T Consensus 22 LekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~ 101 (864)
T KOG4717|consen 22 LEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDG 101 (864)
T ss_pred hhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCC
Confidence 345599999999988772 37999999999876544 2346667765 779999 345668999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| ++|+..+..+ +...-..+.+.||..|+.|.| +..+||||||
T Consensus 102 GDl~DyImKHe~G--l~E~La~kYF~QI~~AI~YCH---qLHVVHRDLK 145 (864)
T KOG4717|consen 102 GDLFDYIMKHEEG--LNEDLAKKYFAQIVHAISYCH---QLHVVHRDLK 145 (864)
T ss_pred chHHHHHHhhhcc--ccHHHHHHHHHHHHHHHHHHh---hhhhhcccCC
Confidence 9 9999876544 777778899999999999999 9999999997
|
|
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-10 Score=107.10 Aligned_cols=110 Identities=16% Similarity=0.027 Sum_probs=86.9
Q ss_pred hhhcc-ccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc---cccccC------------CCCCCcc
Q 007553 482 TEDFH-IKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST---DFRHYN------------SHTDNDD 544 (599)
Q Consensus 482 t~~~~-~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~---~l~H~n------------~~~~~~~ 544 (599)
|++|. ...+||-|-.|.|..+.. ++|+.+|.|.+.... .-.+|+++ .-.||| .....++
T Consensus 60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~----KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLL 135 (400)
T KOG0604|consen 60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSP----KARREVELHWMASGHPHIVSIIDVYENSYQGRKCLL 135 (400)
T ss_pred hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcCH----HHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeE
Confidence 44443 246799999999998875 468899999885432 33467777 568898 3567788
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|||+|+|| ..-++++ +..+++..+.-+|..||+.|+.||| ..-|.|||||
T Consensus 136 iVmE~meGGeLfsriq~~-g~~afTErea~eI~~qI~~Av~~lH---~~nIAHRDlK 188 (400)
T KOG0604|consen 136 IVMECMEGGELFSRIQDR-GDQAFTEREASEIMKQIGLAVRYLH---SMNIAHRDLK 188 (400)
T ss_pred eeeecccchHHHHHHHHc-ccccchHHHHHHHHHHHHHHHHHHH---hcchhhccCC
Confidence 999999999 5556654 3456899999999999999999999 8999999997
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-11 Score=124.41 Aligned_cols=245 Identities=31% Similarity=0.312 Sum_probs=172.9
Q ss_pred CCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEE
Q 007553 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHL 121 (599)
Q Consensus 42 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 121 (599)
.+..++.+++..|.+.. +-..+..+++|+.|++..|.+.. +...+..+++|++|++++|.|+++ ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 45677777788888873 44457788889999999998874 333367788999999999998866 457778889999
Q ss_pred eeecccccccCCccccCCCcccEEecccCccCCCCc-ccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcc
Q 007553 122 DLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP-STLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200 (599)
Q Consensus 122 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 200 (599)
++++|.|... ..+..++.|+.+++++|.+....+ . ...+.+|+.+++.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 9999988843 346668899999999998886543 2 46788889999999887744 3444455666667778877
Q ss_pred cccCchhccCCC--CCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeec---
Q 007553 201 TGPIPSTIGFLN--LLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGP--- 275 (599)
Q Consensus 201 ~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--- 275 (599)
+..-+ +..+. .|+.+++++|.+. ..+..+..+..+..|++.+|.+... ..+...+.+..+....+.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence 63322 22222 3889999999887 3335677888999999999988743 2244455666677777766532
Q ss_pred CCc-CccCCCCCCEEECCCCCCccCC
Q 007553 276 IPP-TIGYLTNLTSLNLGYNQLNSSI 300 (599)
Q Consensus 276 ~~~-~~~~~~~L~~L~ls~n~~~~~~ 300 (599)
... .....+.++.+.+..|......
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred hccccccccccccccccccCcccccc
Confidence 111 1455678888888888776543
|
|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=102.14 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=86.7
Q ss_pred ecccCCceEEEEEeCC-CCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecccccc--cc
Q 007553 491 IGTGGYGSVYRAQLSS-GRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--EH 555 (599)
Q Consensus 491 lg~g~~g~v~~~~~~~-g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~~ 555 (599)
||+|.+|.||++.... |+.+++|++...... ...+.+|+.. .++|++ ......++|+||++++ .+
T Consensus 1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~ 80 (215)
T cd00180 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD 80 (215)
T ss_pred CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence 5899999999999754 899999999776542 4668888887 899998 3446789999999988 88
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 556 FLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 556 ~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++.... ..+++.++..++.++++|++||| ..+++|+||+
T Consensus 81 ~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh---~~~~~H~dl~ 119 (215)
T cd00180 81 LLKENE--GKLSEDEILRILLQILEGLEYLH---SNGIIHRDLK 119 (215)
T ss_pred HHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence 877532 35899999999999999999999 7799999985
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=103.07 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=88.8
Q ss_pred ccceecccCCceEEEEEeCC-CCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 487 IKYCIGTGGYGSVYRAQLSS-GRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~~~-g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
..+.||+|++|.||++...+ ++.+|+|.+..... ....+.+|++. +++|+| ...+..++|+||+++|
T Consensus 3 ~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~ 82 (225)
T smart00221 3 LGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGG 82 (225)
T ss_pred eeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCC
Confidence 34669999999999999764 89999999976543 35678888887 889999 3457789999999998
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++..... .+++.+...++.++++|++||| ..+++|+|++
T Consensus 83 ~L~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~di~ 125 (225)
T smart00221 83 DLFDYLRKKGG--KLSEEEARFYLRQILEALEYLH---SLGIVHRDLK 125 (225)
T ss_pred CHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 777774321 1789999999999999999999 6699999985
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-10 Score=104.06 Aligned_cols=110 Identities=17% Similarity=0.094 Sum_probs=88.0
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---------hHHHHHHhhc---cccccC--------CCCCC
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---------ELAFLETSST---DFRHYN--------SHTDN 542 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---------~~~f~~e~~~---~l~H~n--------~~~~~ 542 (599)
.+.+..++|+|..++|-++.. .+|...|||++...... ..+-.+|+++ -+.||+ .+..-
T Consensus 18 ~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF 97 (411)
T KOG0599|consen 18 KYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAF 97 (411)
T ss_pred hcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcch
Confidence 345667899999998888775 46889999998643221 2345667777 789999 34555
Q ss_pred cceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++|+|.|+.| .+||.. ...++..+..+|+.|+-.|++||| ..-|+|||||
T Consensus 98 ~FlVFdl~prGELFDyLts---~VtlSEK~tR~iMrqlfegVeylH---a~~IVHRDLK 150 (411)
T KOG0599|consen 98 VFLVFDLMPRGELFDYLTS---KVTLSEKETRRIMRQLFEGVEYLH---ARNIVHRDLK 150 (411)
T ss_pred hhhhhhhcccchHHHHhhh---heeecHHHHHHHHHHHHHHHHHHH---HhhhhhcccC
Confidence 78999999999 999984 345788888999999999999999 9999999997
|
|
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-11 Score=108.63 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=85.2
Q ss_pred ceecccCCceEEEEEeC-CCCEEEEEEecCC-chh--hHHHHHHhhc--cccccC----------------CCCCCccee
Q 007553 489 YCIGTGGYGSVYRAQLS-SGRVVALKKLHRS-ETE--ELAFLETSST--DFRHYN----------------SHTDNDDSS 546 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~-~~~--~~~f~~e~~~--~l~H~n----------------~~~~~~~lv 546 (599)
..||+|.||+||+|+.. .|+.||+|+.-.. ..+ ...-++|+.+ .++|+| ..+..+++|
T Consensus 23 ~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylV 102 (376)
T KOG0669|consen 23 AKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATFYLV 102 (376)
T ss_pred HhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccceeeee
Confidence 34899999999999864 5778898775332 111 3557788988 889999 234557999
Q ss_pred ecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+|+++. .-.|.++. ..++..++.+++.+...||.|+| ..+|+|||+|
T Consensus 103 f~~cehDLaGlLsn~~--vr~sls~Ikk~Mk~Lm~GL~~iH---r~kilHRDmK 151 (376)
T KOG0669|consen 103 FDFCEHDLAGLLSNRK--VRFSLSEIKKVMKGLMNGLYYIH---RNKILHRDMK 151 (376)
T ss_pred HHHhhhhHHHHhcCcc--ccccHHHHHHHHHHHHHHHHHHH---HhhHHhhccc
Confidence 9999999 88888643 34888999999999999999999 8999999986
|
|
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-10 Score=101.26 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=86.0
Q ss_pred hccccceecccCCceEEEEE-eCCCCEEEEEEecCCchhhHHHHHHhhc--ccc-ccC----------CCCCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLETSST--DFR-HYN----------SHTDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~-H~n----------~~~~~~~lv~e~ 549 (599)
++...+.+|+|.|++||.|. ..+.+.++||.+++-. .....+|+.+ .++ ||| ..+....+|+||
T Consensus 39 dYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk--kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~ 116 (338)
T KOG0668|consen 39 DYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK--KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEY 116 (338)
T ss_pred hHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH--HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhh
Confidence 44445669999999999998 5678899999997643 3457789988 666 999 456677899999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|- ..-|.+ .++-.+..-...++.+||.|+| ++||.|||+|
T Consensus 117 v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCH---S~GImHRDVK 159 (338)
T KOG0668|consen 117 VNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCH---SMGIMHRDVK 159 (338)
T ss_pred hccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHH---hcCcccccCC
Confidence 9998 555553 2666778888999999999999 9999999986
|
|
| >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-09 Score=100.13 Aligned_cols=103 Identities=17% Similarity=0.022 Sum_probs=75.4
Q ss_pred ccccceecccCCceEEEEEeCCCCEEEEEEecCCchh-----------------------hHHHHHHhhc--cccccC--
Q 007553 485 FHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE-----------------------ELAFLETSST--DFRHYN-- 537 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~-----------------------~~~f~~e~~~--~l~H~n-- 537 (599)
+...+.||+|+||.||+|..++|+.||||++...... ...+..|... .+.|++
T Consensus 17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~ 96 (198)
T cd05144 17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP 96 (198)
T ss_pred hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC
Confidence 4445679999999999999888999999987543210 0124455555 666764
Q ss_pred ----CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 ----SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ----~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
......++||||++++ .+.... .....++.++++++.++| ..+|+||||+
T Consensus 97 v~~~~~~~~~~lv~e~~~g~~L~~~~~~---------~~~~~~~~~i~~~l~~lh---~~gi~H~Dl~ 152 (198)
T cd05144 97 VPKPIDWNRHAVVMEYIDGVELYRVRVL---------EDPEEVLDEILEEIVKAY---KHGIIHGDLS 152 (198)
T ss_pred CCceeecCCceEEEEEeCCcchhhcccc---------ccHHHHHHHHHHHHHHHH---HCCCCcCCCC
Confidence 3345668999999998 433220 235678999999999999 6899999986
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom |
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-10 Score=103.03 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=73.0
Q ss_pred eecccCCceEEEEEeCCCCEEEEEEecCCch-----h----hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 490 CIGTGGYGSVYRAQLSSGRVVALKKLHRSET-----E----ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~-----~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
.||+|++|.||+|.+ +|..|++|....... + ...+.+|+++ .++|++ ...+..++||||+
T Consensus 1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~ 79 (199)
T TIGR03724 1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI 79 (199)
T ss_pred CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence 389999999999996 578899998643211 1 2456678777 777765 3455678999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++ .+++.... . .++.+++++|++|| ..+++|||++
T Consensus 80 ~g~~l~~~~~~~~---------~-~~~~~i~~~l~~lH---~~gi~H~Dl~ 117 (199)
T TIGR03724 80 EGKPLKDVIEEGN---------D-ELLREIGRLVGKLH---KAGIVHGDLT 117 (199)
T ss_pred CCccHHHHHhhcH---------H-HHHHHHHHHHHHHH---HCCeecCCCC
Confidence 998 66665311 1 88999999999999 8899999985
|
Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. |
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-09 Score=102.46 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=77.8
Q ss_pred ceecccCCceEEEEEeCCCCEEEEEEecCCch-----h----hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 489 YCIGTGGYGSVYRAQLSSGRVVALKKLHRSET-----E----ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~-----~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
..||+|++|.||+|.. +|..|+||....... + ...+.+|+.+ .++|++ ...+..++||||
T Consensus 2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~ 80 (211)
T PRK14879 2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY 80 (211)
T ss_pred cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence 3589999999999987 677899997653221 1 2346777777 777776 356677899999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++ .+++... .+ ++..++.+++.+|+++| ..+++|||++
T Consensus 81 ~~G~~L~~~~~~~------~~-~~~~i~~~i~~~l~~lH---~~~i~H~Dl~ 122 (211)
T PRK14879 81 IEGEPLKDLINSN------GM-EELELSREIGRLVGKLH---SAGIIHGDLT 122 (211)
T ss_pred eCCcCHHHHHHhc------cH-HHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 9998 7776532 22 78999999999999999 8899999985
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-09 Score=98.16 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=86.8
Q ss_pred ccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC---------CCCCCcceeecccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DF-RHYN---------SHTDNDDSSDEHLA 551 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n---------~~~~~~~lv~e~~~ 551 (599)
|.....+|+|.||.+-.+..+ ..+.+++|-+...-...++|.+|-.- .+ .|.| -..+....++||+|
T Consensus 26 y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP 105 (378)
T KOG1345|consen 26 YTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAP 105 (378)
T ss_pred hhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCc
Confidence 455667999999999999875 46788999887655556789999876 44 3444 45677888999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.| .+-+... .+....-.+++.|++.|+.||| ++-+||||||
T Consensus 106 ~gdL~snv~~~----GigE~~~K~v~~ql~SAi~fMH---sknlVHRdlK 148 (378)
T KOG1345|consen 106 RGDLRSNVEAA----GIGEANTKKVFAQLLSAIEFMH---SKNLVHRDLK 148 (378)
T ss_pred cchhhhhcCcc----cccHHHHHHHHHHHHHHHHHhh---ccchhhcccc
Confidence 99 7666642 2777778899999999999999 9999999997
|
|
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-10 Score=109.72 Aligned_cols=109 Identities=22% Similarity=0.195 Sum_probs=86.1
Q ss_pred ccceecccCCceEEEEE-eCCCCEEEEEEecCCc---hhh-----HHHHHHhhc--cccccC---------CCCCCccee
Q 007553 487 IKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSE---TEE-----LAFLETSST--DFRHYN---------SHTDNDDSS 546 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~---~~~-----~~f~~e~~~--~l~H~n---------~~~~~~~lv 546 (599)
.-+.+|+|+|++||++. +...+.||||+-.... .+. .-..+|-.+ .++||. .+.+..+-|
T Consensus 467 lLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTV 546 (775)
T KOG1151|consen 467 LLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTV 546 (775)
T ss_pred HHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceee
Confidence 34679999999999998 5567889999754321 111 124456666 999999 678889999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.||+++. +=||.++ +.++..++..|+.||..||.||. +.++||||-|||
T Consensus 547 LEYceGNDLDFYLKQh---klmSEKEARSIiMQiVnAL~YLN-EikpPIIHYDLK 597 (775)
T KOG1151|consen 547 LEYCEGNDLDFYLKQH---KLMSEKEARSIIMQIVNALKYLN-EIKPPIIHYDLK 597 (775)
T ss_pred eeecCCCchhHHHHhh---hhhhHHHHHHHHHHHHHHHHHHh-ccCCCeeeeccC
Confidence 9999998 6667653 24788889999999999999998 678999999996
|
|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.3e-10 Score=119.94 Aligned_cols=118 Identities=20% Similarity=0.206 Sum_probs=85.4
Q ss_pred HHHHHHHhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhccccccC-----------C
Q 007553 475 FEEMIQATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSSTDFRHYN-----------S 538 (599)
Q Consensus 475 ~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~~l~H~n-----------~ 538 (599)
..++.-..+||....+||+|+||.|..++.+ .++++|.|++.... .+..-|.+|-.+ |-|-| -
T Consensus 67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDi-mv~~ns~Wiv~LhyAFQ 145 (1317)
T KOG0612|consen 67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDI-MVFGNSEWIVQLHYAFQ 145 (1317)
T ss_pred HHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHH-HHcCCcHHHHHHHHHhc
Confidence 3455556678888889999999999999864 58899999997632 223345555554 33333 5
Q ss_pred CCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 HTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 ~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+...+|||||||+|| -..+.... .-+=+|+. + .++.|.-|+.=|| ..|+||||+|
T Consensus 146 D~~~LYlVMdY~pGGDlltLlSk~~-~~pE~~Ar-F-Y~aEiVlAldslH---~mgyVHRDiK 202 (1317)
T KOG0612|consen 146 DERYLYLVMDYMPGGDLLTLLSKFD-RLPEDWAR-F-YTAEIVLALDSLH---SMGYVHRDIK 202 (1317)
T ss_pred CccceEEEEecccCchHHHHHhhcC-CChHHHHH-H-HHHHHHHHHHHHH---hccceeccCC
Confidence 788999999999999 55555322 22224544 3 4558889999999 9999999997
|
|
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.9e-10 Score=102.65 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=83.6
Q ss_pred hhccccceecccCCceEEEEE-eCCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|..-.++|+|.||.|..++ -..|+.+|+|+++.... +..--+.|-++ ..+||- -..+.++.||
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVM 247 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVM 247 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEE
Confidence 456666789999999999888 45799999999976421 12223344455 889998 4667789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+.+| .-+|+. ...++..+..=.-.+|..||.||| +..||+||||
T Consensus 248 eyanGGeLf~HLsr---er~FsE~RtRFYGaEIvsAL~YLH---s~~ivYRDlK 295 (516)
T KOG0690|consen 248 EYANGGELFFHLSR---ERVFSEDRTRFYGAEIVSALGYLH---SRNIVYRDLK 295 (516)
T ss_pred EEccCceEeeehhh---hhcccchhhhhhhHHHHHHhhhhh---hCCeeeeech
Confidence 999999 334442 234666666667789999999999 7999999996
|
|
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.4e-10 Score=107.09 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=87.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
+.|..-++||+|+||+||-++. .+|+.+|.|++...... +..-+.|-.+ +++.|- .+.+.+++|+
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVL 264 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVL 264 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEE
Confidence 3577778999999999998885 46999999988654332 2233444444 555554 5788899999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..|+|| +=+|.+.. ...++..+..=.|++|+.||.+|| ..+||+||||
T Consensus 265 tlMNGGDLkfHiyn~g-~~gF~e~ra~FYAAEi~cGLehlH---~~~iVYRDLK 314 (591)
T KOG0986|consen 265 TLMNGGDLKFHIYNHG-NPGFDEQRARFYAAEIICGLEHLH---RRRIVYRDLK 314 (591)
T ss_pred EeecCCceeEEeeccC-CCCCchHHHHHHHHHHHhhHHHHH---hcceeeccCC
Confidence 999999 44566543 356899999999999999999999 8999999997
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-10 Score=113.47 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=89.4
Q ss_pred hccccceecccCCceEEEEE-eCCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
+|.....+|.|.||.|||++ .+.++..|||.++....+ .....+||-+ ..+||| ...+.+|+.|||+.
T Consensus 16 dyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEycg 95 (829)
T KOG0576|consen 16 DYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCG 95 (829)
T ss_pred chhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEecC
Confidence 45555679999999999998 567999999999776544 3345566666 999999 57888999999999
Q ss_pred cc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+=+.. ...+++.-|+..++....+|++||| ..+=+|||+|
T Consensus 96 ggslQdiy~--~TgplselqiayvcRetl~gl~ylh---s~gk~hRdiK 139 (829)
T KOG0576|consen 96 GGSLQDIYH--VTGPLSELQIAYVCRETLQGLKYLH---SQGKIHRDIK 139 (829)
T ss_pred CCcccceee--ecccchhHHHHHHHhhhhccchhhh---cCCccccccc
Confidence 99 433442 2235888999999999999999999 8898999986
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-09 Score=79.18 Aligned_cols=59 Identities=41% Similarity=0.505 Sum_probs=34.7
Q ss_pred CCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCc
Q 007553 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103 (599)
Q Consensus 45 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 103 (599)
+|++|++++|+++...++.|.++++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666654444555666666666666666655555556666666666666554
|
... |
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-09 Score=101.06 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=82.3
Q ss_pred CCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecccccc--cccccC
Q 007553 495 GYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--EHFLSA 559 (599)
Q Consensus 495 ~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~~~l~~ 559 (599)
+||.||+|... +|+.+|+|++...... ...+.+|+.. +++|+| ......++|+||+++| .+++..
T Consensus 1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~ 80 (244)
T smart00220 1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK 80 (244)
T ss_pred CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence 57999999975 4899999999765432 4678889888 889999 3457789999999998 777764
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 560 PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 560 ~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.. .+++.+...++.++++|++||| ..+++|+||+
T Consensus 81 ~~---~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~i~ 114 (244)
T smart00220 81 RG---RLSEDEARFYARQILSALEYLH---SNGIIHRDLK 114 (244)
T ss_pred cc---CCCHHHHHHHHHHHHHHHHHHH---HcCeecCCcC
Confidence 22 2899999999999999999999 6799999985
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-09 Score=105.24 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=69.7
Q ss_pred hccccceecccCCceEEEEEeCC----CCEEEEEEecCCchh---hH---------HHHHHhh-c-cccccC----C---
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSS----GRVVALKKLHRSETE---EL---------AFLETSS-T-DFRHYN----S--- 538 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~----g~~vavK~l~~~~~~---~~---------~f~~e~~-~-~l~H~n----~--- 538 (599)
.|...+.||+|+||.||+|...+ +..+|+|........ .. ....+.. . .++|++ .
T Consensus 13 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~ 92 (294)
T PHA02882 13 EWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGCG 92 (294)
T ss_pred ceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEee
Confidence 46667789999999999999754 345666653322111 00 1111111 2 667887 0
Q ss_pred -CCC----Ccceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 -HTD----NDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 -~~~----~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
... ..++++|+.... .+.+... ...++.....|+.|+++||+||| ..+|+|||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~iiHrDiK 153 (294)
T PHA02882 93 SFKRCRMYYRFILLEKLVENTKEIFKRI---KCKNKKLIKNIMKDMLTTLEYIH---EHGISHGDIK 153 (294)
T ss_pred eEecCCceEEEEEEehhccCHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 011 125666666555 4444421 22567888999999999999999 7899999996
|
|
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-09 Score=113.99 Aligned_cols=102 Identities=9% Similarity=0.045 Sum_probs=75.6
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEE-ecCC-ch-------hhHHHHHHhhc--cccccC--------CCCCCc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKK-LHRS-ET-------EELAFLETSST--DFRHYN--------SHTDND 543 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~-l~~~-~~-------~~~~f~~e~~~--~l~H~n--------~~~~~~ 543 (599)
..+...+.||+|+||.||+|.+.+.. +++|+ .... .. ....+.+|+++ .++|++ ...+..
T Consensus 333 ~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~ 411 (535)
T PRK09605 333 RRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEK 411 (535)
T ss_pred cccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCC
Confidence 33455678999999999999985443 44433 2211 10 12457888887 888888 245577
Q ss_pred ceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+++| .+++. ....++.+++++|+||| ..+++||||+
T Consensus 412 ~lv~E~~~g~~L~~~l~-----------~~~~~~~~i~~~L~~lH---~~giiHrDlk 455 (535)
T PRK09605 412 TIVMEYIGGKDLKDVLE-----------GNPELVRKVGEIVAKLH---KAGIVHGDLT 455 (535)
T ss_pred EEEEEecCCCcHHHHHH-----------HHHHHHHHHHHHHHHHH---hCCCccCCCC
Confidence 8999999998 66554 35789999999999999 7899999996
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.6e-09 Score=106.71 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=86.5
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHH---------HHHHhhc--ccc---ccC--------CCC
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELA---------FLETSST--DFR---HYN--------SHT 540 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~---------f~~e~~~--~l~---H~n--------~~~ 540 (599)
+|..-..+|+|+||.|+.+..+ +...|+||.+.+.+.-... .--||.+ .++ |+| .+.
T Consensus 562 ~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEdd 641 (772)
T KOG1152|consen 562 DYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDD 641 (772)
T ss_pred cceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecC
Confidence 4555677999999999999974 4567899998765432222 2235665 666 999 467
Q ss_pred CCcceeecccccc---cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN---EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G---~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+..+++||=..-| .+|+.-++ .++...+..|..||+.|+++|| ..+|||||+|
T Consensus 642 d~yyl~te~hg~gIDLFd~IE~kp---~m~E~eAk~IFkQV~agi~hlh---~~~ivhrdik 697 (772)
T KOG1152|consen 642 DYYYLETEVHGEGIDLFDFIEFKP---RMDEPEAKLIFKQVVAGIKHLH---DQGIVHRDIK 697 (772)
T ss_pred CeeEEEecCCCCCcchhhhhhccC---ccchHHHHHHHHHHHhcccccc---ccCceecccc
Confidence 7788999988888 78887533 4899999999999999999999 8999999997
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.8e-10 Score=99.84 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=78.0
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc--cc
Q 007553 491 IGTGGYGSVYRAQLSSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN--EH 555 (599)
Q Consensus 491 lg~g~~g~v~~~~~~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G--~~ 555 (599)
+.+...|+.|+|+|+ |..+++|++..... ..+.|.+|.-. .+.||| .....+.+|..|||.| +.
T Consensus 198 l~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gslyn 276 (448)
T KOG0195|consen 198 LAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYN 276 (448)
T ss_pred hccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHHHH
Confidence 778889999999995 77778888765432 25678888866 889999 4567788999999999 88
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhhhC
Q 007553 556 FLSAPENYERVDFSPDFSIADQSKKGFKLLAD 587 (599)
Q Consensus 556 ~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~ 587 (599)
.|+... +..+|..|.+++|.+||+||+|||+
T Consensus 277 vlhe~t-~vvvd~sqav~faldiargmaflhs 307 (448)
T KOG0195|consen 277 VLHEQT-SVVVDHSQAVRFALDIARGMAFLHS 307 (448)
T ss_pred HHhcCc-cEEEecchHHHHHHHHHhhHHHHhh
Confidence 888643 4567999999999999999999994
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-09 Score=78.31 Aligned_cols=60 Identities=42% Similarity=0.525 Sum_probs=37.0
Q ss_pred CCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeeccc
Q 007553 68 RDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQ 127 (599)
Q Consensus 68 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 127 (599)
|+|++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356666666666665555566666666666666666665555566666666666666654
|
... |
| >PRK10345 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-09 Score=96.61 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=72.0
Q ss_pred cccceecccCCceEEEEEeCCCCEEEEEEecCCch-hhHHHHHHhhc--cc-----cccC-------C-CC---CC-cce
Q 007553 486 HIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET-EELAFLETSST--DF-----RHYN-------S-HT---DN-DDS 545 (599)
Q Consensus 486 ~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l-----~H~n-------~-~~---~~-~~l 545 (599)
.....||+|+||.||. .-.++.. +||++..... ....+.+|+.+ .+ +||| . +. .. ..+
T Consensus 5 ~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~ 82 (210)
T PRK10345 5 SEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDV 82 (210)
T ss_pred CCcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEE
Confidence 3456799999999996 2234444 6998865432 34678889988 67 5688 1 11 12 337
Q ss_pred eecc--cccc--cccccCCCCCCCCChHHHHHHHHHHHHHH-hhhhCCCCccccccccC
Q 007553 546 SDEH--LANN--EHFLSAPENYERVDFSPDFSIADQSKKGF-KLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~--~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl-~yLH~~~~~~i~Hrdl~ 599 (599)
|+|| +++| .+++.+. .++.. ..++.++..++ +||| ..+|+|||||
T Consensus 83 I~e~~G~~~~tL~~~l~~~----~~~e~--~~~~~~~L~~l~~yLh---~~~IvhrDlK 132 (210)
T PRK10345 83 IADFDGKPSITLTEFAEQC----RYEED--VAQLRQLLKKLKRYLL---DNRIVTMELK 132 (210)
T ss_pred EecCCCCcchhHHHHHHcc----cccHh--HHHHHHHHHHHHHHHH---HCCEeecCCC
Confidence 8999 6678 8888642 24444 35577878777 9999 8999999996
|
|
| >cd05119 RIO RIO kinase family, catalytic domain | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.2e-09 Score=95.31 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=69.4
Q ss_pred ceecccCCceEEEEEeCCCCEEEEEEecCCchh---hHHH----------------------HHHhhc--cccccC----
Q 007553 489 YCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE---ELAF----------------------LETSST--DFRHYN---- 537 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~---~~~f----------------------~~e~~~--~l~H~n---- 537 (599)
+.||+|+||.||+|...+|+.||||.+...... ...+ ..|... .+++..
T Consensus 3 ~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~ 82 (187)
T cd05119 3 GPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPVP 82 (187)
T ss_pred cccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCCC
Confidence 458999999999999878999999988653221 1111 122222 232222
Q ss_pred --CCCCCcceeecccccc-c--ccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCC-ccccccccC
Q 007553 538 --SHTDNDDSSDEHLANN-E--HFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKY-RKSYYQRLY 599 (599)
Q Consensus 538 --~~~~~~~lv~e~~~~G-~--~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~-~~i~Hrdl~ 599 (599)
......++||||+++| . ..+.... .. .+...++.+++.++.++| . .+|+||||+
T Consensus 83 ~~~~~~~~~lv~e~~~g~~~~~~~l~~~~----~~-~~~~~~~~~~~~~l~~lh---~~~~ivH~Dl~ 142 (187)
T cd05119 83 KPIDLNRHVLVMEFIGGDGIPAPRLKDVR----LL-EDPEELYDQILELMRKLY---REAGLVHGDLS 142 (187)
T ss_pred ceEecCCCEEEEEEeCCCCccChhhhhhh----hc-ccHHHHHHHHHHHHHHHh---hccCcCcCCCC
Confidence 1123468999999997 2 2232211 11 567889999999999999 6 899999986
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct |
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-09 Score=111.88 Aligned_cols=109 Identities=22% Similarity=0.148 Sum_probs=80.8
Q ss_pred ccccceecccCCc-eEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc---cccccC--------CCCCCcceeeccccc
Q 007553 485 FHIKYCIGTGGYG-SVYRAQLSSGRVVALKKLHRSETEELAFLETSST---DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 485 ~~~~~~lg~g~~g-~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
|..+.++|.|+-| .||+|.+ +|+.||||++-...- .-..+||.. .=.||| .+.+-+|+..|.|+-
T Consensus 511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e~~--~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~ 587 (903)
T KOG1027|consen 511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEEFF--DFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCAC 587 (903)
T ss_pred eccHHHcccCCCCcEEEEEee-CCceehHHHHhhHhH--HHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhh
Confidence 4456678888877 7899999 589999999854322 123357776 668999 466778999999999
Q ss_pred c-cccccCCC-CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N-EHFLSAPE-NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G-~~~l~~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
- .+|+..+. ......-.....+..|+++|++||| ..+|+|||||
T Consensus 588 sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLH---sl~iVHRDLk 633 (903)
T KOG1027|consen 588 SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLH---SLKIVHRDLK 633 (903)
T ss_pred hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHH---hcccccccCC
Confidence 9 88888641 1111111345778889999999999 7999999996
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8e-09 Score=99.79 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=84.9
Q ss_pred HhhhccccceecccCCceEEEEEeC----CCCEEEEEEecCCchhhHHHHHHhhc--cc-------cccC--CCCCCcce
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLS----SGRVVALKKLHRSETEELAFLETSST--DF-------RHYN--SHTDNDDS 545 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~~~~~~f~~e~~~--~l-------~H~n--~~~~~~~l 545 (599)
-.+.|...+.||+|.|+.||++... ....||+|.+...+.. .....|+++ .+ .|-+ ...+...+
T Consensus 34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p-~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~i 112 (418)
T KOG1167|consen 34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSP-SRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAI 112 (418)
T ss_pred hhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCc-hHHHHHHHHHHHhccchhhhcchhhhccCCeeEE
Confidence 3445677788999999999999853 3578999999765443 234455554 22 2222 57788999
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+||+++- .++... ++.++.........+||+|+| ..+|||||+|
T Consensus 113 vlp~~~H~~f~~l~~~------l~~~~i~~Yl~~ll~Al~~~h---~~GIvHRDiK 159 (418)
T KOG1167|consen 113 VLPYFEHDRFRDLYRS------LSLAEIRWYLRNLLKALAHLH---KNGIVHRDIK 159 (418)
T ss_pred EecccCccCHHHHHhc------CCHHHHHHHHHHHHHHhhhhh---ccCccccCCC
Confidence 99999999 777663 778899999999999999999 9999999997
|
|
| >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=83.72 Aligned_cols=99 Identities=12% Similarity=-0.066 Sum_probs=76.3
Q ss_pred ceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--ccccc--C--------CCCCCcceeecccccc--c
Q 007553 489 YCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHY--N--------SHTDNDDSSDEHLANN--E 554 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~--n--------~~~~~~~lv~e~~~~G--~ 554 (599)
+.+|+|.++.||++... +..++||....... ...+.+|+.+ .++|. . ...+..++++||++++ .
T Consensus 4 ~~i~~g~~~~v~~~~~~-~~~~~iK~~~~~~~-~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~ 81 (155)
T cd05120 4 KLLKGGLTNRVYLLGTK-DEDYVLKINPSREK-GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETLD 81 (155)
T ss_pred eecccccccceEEEEec-CCeEEEEecCCCCc-hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeecc
Confidence 45899999999999985 47899998866433 3457777776 66553 2 2335689999999988 3
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 555 HFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 555 ~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+ ++.....++.+++++++++|....++++|||++
T Consensus 82 ~~----------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~ 116 (155)
T cd05120 82 EV----------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLH 116 (155)
T ss_pred cC----------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 32 556778899999999999997666899999985
|
The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves |
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-08 Score=88.52 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=82.7
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc--hhhHHHHHHhhc---cccccC--------CCCCCcceeeccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE--TEELAFLETSST---DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~--~~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~ 550 (599)
......||+|++|.|-+-++ .+|+.+|||++...- ++....+.|+.+ ....|- ......|+-||-|
T Consensus 48 L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M 127 (282)
T KOG0984|consen 48 LVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELM 127 (282)
T ss_pred hhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHh
Confidence 33344599999998887764 579999999997642 334566777766 444444 5677789999999
Q ss_pred ccc-cccccC-CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSA-PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~-~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..- +.|-.. -..+..+.....=+||..|.+||.|||+ +..+||||+|
T Consensus 128 ~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~--kL~vIHRDvK 176 (282)
T KOG0984|consen 128 DTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHS--KLSVIHRDVK 176 (282)
T ss_pred hhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHH--HhhhhhccCC
Confidence 988 433332 0123346777788999999999999995 6899999986
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-08 Score=97.98 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=78.0
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCch-h---hHHHHHHhhc-cc--cccC--------CCCCCcceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET-E---ELAFLETSST-DF--RHYN--------SHTDNDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~-~---~~~f~~e~~~-~l--~H~n--------~~~~~~~lv~ 547 (599)
+|....+||+|+||.|..|.-+ ..+.+|||+++.... + ..--+.|-++ .+ +-|- -..+.++.||
T Consensus 350 DFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVM 429 (683)
T KOG0696|consen 350 DFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVM 429 (683)
T ss_pred ccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEE
Confidence 5666778999999999998854 357899999976421 1 1112223333 11 1121 4668889999
Q ss_pred cccccc-ccc-ccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN-EHF-LSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G-~~~-l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+.+| --| +++ ...+..+.++=.|++||-||=||| .++||+||||
T Consensus 430 EyvnGGDLMyhiQQ---~GkFKEp~AvFYAaEiaigLFFLh---~kgIiYRDLK 477 (683)
T KOG0696|consen 430 EYVNGGDLMYHIQQ---VGKFKEPVAVFYAAEIAIGLFFLH---SKGIIYRDLK 477 (683)
T ss_pred EEecCchhhhHHHH---hcccCCchhhhhhHHHHHHhhhhh---cCCeeeeecc
Confidence 999999 222 332 122667788889999999999999 9999999996
|
|
| >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-08 Score=89.34 Aligned_cols=112 Identities=7% Similarity=-0.071 Sum_probs=80.2
Q ss_pred ccHHHHHH--HhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhH----------HHHHHhhc--cccccC-
Q 007553 473 ITFEEMIQ--ATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEEL----------AFLETSST--DFRHYN- 537 (599)
Q Consensus 473 ~~~~~l~~--at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~----------~f~~e~~~--~l~H~n- 537 (599)
..|.++.. -.+.|...+++|.|+||.||...- ++..+|||.+........ .|.+|+.. +++||+
T Consensus 19 ~~~~~~~~~~l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI 97 (232)
T PRK10359 19 NKYKEIFDDFLSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGL 97 (232)
T ss_pred ccHHHHHHHHhhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCC
Confidence 34444432 245678889999999999998665 577899999975432211 15778775 999999
Q ss_pred -------C-C-------CCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 -------S-H-------TDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 -------~-~-------~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
. . ....++||||++|. .++.. ++. ....+|+.+|..+| ..+++|||++
T Consensus 98 ~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~-------~~~----~~~~~i~~~l~~lH---~~gi~H~Dik 162 (232)
T PRK10359 98 ASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPE-------ISE----DVKAKIKASIESLH---QHGMVSGDPH 162 (232)
T ss_pred CcceEeeeecccccccccCCeEEEEEEECCccHHHhhh-------ccH----HHHHHHHHHHHHHH---HcCCccCCCC
Confidence 1 1 13478999999988 55422 221 34569999999999 8899999985
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.5e-10 Score=112.57 Aligned_cols=159 Identities=31% Similarity=0.303 Sum_probs=105.4
Q ss_pred CcccCCCCCCCEEEcccCcCcc---cCC----------------------c---CCCC---CCCCCEEeccCCcccccCC
Q 007553 37 PSETGALSRLKVLDLSYNRLTG---TIP----------------------S---EIGS---LRDLLELNLSYNILNGSIP 85 (599)
Q Consensus 37 ~~~~~~~~~L~~L~l~~n~~~~---~~~----------------------~---~~~~---l~~L~~L~L~~n~~~~~~p 85 (599)
|-.+..++.||+|.|.++.+.. ..+ . .+++ ...|.+.+.++|.+. ...
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 5556778888888888876541 110 0 1111 235677777777776 455
Q ss_pred ccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCC
Q 007553 86 LEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165 (599)
Q Consensus 86 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 165 (599)
.++.-++.|+.|+|++|++.+. +.+..+++|++||+++|.+....--...++. |+.|.+++|.++.. ..+.++.+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhh
Confidence 5666678888888888888754 4778888888888888887733222233444 88888888877643 35677888
Q ss_pred CCeeecccccccccC-ccccCCCCCCCEEEccCCccc
Q 007553 166 LSTLYLAYNNLVGPL-PKEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 166 L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~ 201 (599)
|+.||+++|-+.+.- ...+..+..|+.|+|.+|.+.
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888888888766431 123455667788888888664
|
|
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.4e-09 Score=93.85 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=83.0
Q ss_pred ceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc---cccccC--------CCCCCcceeecccccc-
Q 007553 489 YCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST---DFRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
..||.|.||+|+|-.. +.|+.+|||+++....+ ..++..|.++ .=+-|| ..+...|+-||.|.-.
T Consensus 70 g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd~Sl 149 (361)
T KOG1006|consen 70 GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMDISL 149 (361)
T ss_pred HHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHhhhH
Confidence 3499999999999885 57999999999876443 4568888877 445555 6788899999999988
Q ss_pred ---cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 ---EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ---~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++++.. ....+...-.-.|+.-..+||.||-+ ..+|||||+|
T Consensus 150 DklYk~vy~v-q~~~ipE~Ilg~ItvatV~AL~yLK~--~lkiIHRDvK 195 (361)
T KOG1006|consen 150 DKLYKRVYSV-QKSRIPENILGHITVATVDALDYLKE--ELKIIHRDVK 195 (361)
T ss_pred HHHHHHHHHH-HhccCcHhhhhheeeeehhHHHHHHH--HhhhhhccCC
Confidence 3444431 22346666677888888999999984 5899999986
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.5e-08 Score=100.46 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=78.4
Q ss_pred ccccceecccCCceEEEEE-eCCCCEEEEEEecCCchhhHHHHHHhhc---cccccC--------CCCCCcceeeccccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLETSST---DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
+.....+|.|+|+.|-++. ..+++..+||++.....+ -.+|+.+ .-+||| .++...++|||++.+
T Consensus 324 y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~---~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g 400 (612)
T KOG0603|consen 324 YEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADD---NQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDG 400 (612)
T ss_pred hccccccCCCCccceeeeeccccccchhheeccccccc---cccccchhhhhcCCCcceeecceecCCceeeeeehhccc
Confidence 3334459999999999887 457889999999765222 2345544 668999 567788999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| -+-+...+ ..-.++.+|+.+++.|+.||| ..+||||||+
T Consensus 401 ~ell~ri~~~~----~~~~e~~~w~~~lv~Av~~LH---~~gvvhRDLk 442 (612)
T KOG0603|consen 401 GELLRRIRSKP----EFCSEASQWAAELVSAVDYLH---EQGVVHRDLK 442 (612)
T ss_pred cHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHH---hcCeeecCCC
Confidence 9 22222111 222678889999999999999 7999999996
|
|
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.5e-08 Score=93.10 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=81.2
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHH-HHhhc---cccccC--------CCCCCcce
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFL-ETSST---DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~-~e~~~---~l~H~n--------~~~~~~~l 545 (599)
..+|..-.+||+|+|+.|..+.+ ...+.+|+|.++..-.+ .-.++ .|..+ .-+||- -.+..++.
T Consensus 249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlff 328 (593)
T KOG0695|consen 249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFF 328 (593)
T ss_pred cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEE
Confidence 45788888999999999999886 45788999988654221 11222 23333 446665 46677899
Q ss_pred eecccccc-ccc-ccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN-EHF-LSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G-~~~-l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|.||+++| --| +++ ...+....+.-...+|.-||.||| +.+||+||||
T Consensus 329 vieyv~ggdlmfhmqr---qrklpeeharfys~ei~lal~flh---~rgiiyrdlk 378 (593)
T KOG0695|consen 329 VIEYVNGGDLMFHMQR---QRKLPEEHARFYSAEICLALNFLH---ERGIIYRDLK 378 (593)
T ss_pred EEEEecCcceeeehhh---hhcCcHHHhhhhhHHHHHHHHHHh---hcCeeeeecc
Confidence 99999999 221 221 123777777778889999999999 9999999996
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-09 Score=111.96 Aligned_cols=127 Identities=29% Similarity=0.235 Sum_probs=70.5
Q ss_pred cccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCC
Q 007553 141 NLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLS 220 (599)
Q Consensus 141 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 220 (599)
.|.+.+.++|.+. .+.+++.-++.|+.|+|+.|+++.. +.+..+++|++||++.|.+.....-....+. |+.|.|+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4555666666655 2334555566666666666666644 2556666666666666666532211222222 6667777
Q ss_pred CCcCcccCcccCCCCCCCCEEEccCCcCCCCC-CcccCCCCCCCEEeccCccee
Q 007553 221 HNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLL-PREVGNLKYLDSLSLDRNNLI 273 (599)
Q Consensus 221 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 273 (599)
+|.++.. ..+.++.+|+.||+++|-+.+-- -..+..+..|+.|+|.+|.+.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6666533 24566666777777776665321 111233455666666666653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-09 Score=100.23 Aligned_cols=177 Identities=24% Similarity=0.163 Sum_probs=101.0
Q ss_pred cccEEecccCccCCC-CcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCc-cccc-CchhccCCCCCCEE
Q 007553 141 NLVSLFLDNNNLTGP-IPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN-LTGP-IPSTIGFLNLLDEL 217 (599)
Q Consensus 141 ~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L 217 (599)
.||.|||++..|+.. .-..+..+.+|+.|.|.++++.+.+...+....+|+.|+++.+. ++.. ..-.+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466667766665532 12234556667777777777666666666666777777776643 2211 12235566777777
Q ss_pred eCCCCcCcccCcc-cCCC-CCCCCEEEccCCcCC--C-CCCcccCCCCCCCEEeccCcce-eecCCcCccCCCCCCEEEC
Q 007553 218 RLSHNRLDGPIPP-TIGN-LTYLTSLDLSSNQLS--G-LLPREVGNLKYLDSLSLDRNNL-IGPIPPTIGYLTNLTSLNL 291 (599)
Q Consensus 218 ~l~~n~l~~~~~~-~~~~-l~~L~~L~l~~n~l~--~-~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~L~~L~l 291 (599)
+|++|.+....-. .+.. -++|+.|+++++.-. . .+..-...+|+|..|||++|.. +......|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7777766533211 1111 246677777765311 1 1111124577788888876543 2222334566778888888
Q ss_pred CCCCCccCCCc---cCcCCCCCCEEEcccCc
Q 007553 292 GYNQLNSSIPP---ELMNCSQLQNLAVNHNS 319 (599)
Q Consensus 292 s~n~~~~~~~~---~~~~l~~L~~L~l~~n~ 319 (599)
+.|.. ++|. .+.+.|+|.+|++.++-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 77754 3454 34667788888876653
|
|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.9e-08 Score=97.73 Aligned_cols=121 Identities=13% Similarity=0.106 Sum_probs=80.7
Q ss_pred cccHHHHHHHhh---hccccceecccCCceEEEEE-eCCCCEEEEEEecCCchhhH----------HHHHHhhc----cc
Q 007553 472 RITFEEMIQATE---DFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEEL----------AFLETSST----DF 533 (599)
Q Consensus 472 ~~~~~~l~~at~---~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~~~----------~f~~e~~~----~l 533 (599)
...|-.|.+|-. -|.....||-|.||+|..++ .+....+|.|.|+..+.-.+ +.+.|+.- ++
T Consensus 615 ESnYiRLkRaKMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrL 694 (1034)
T KOG0608|consen 615 ESNYIRLKRAKMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRL 694 (1034)
T ss_pred hhhHHHHHHhhccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEE
Confidence 345556666654 37777889999999999887 45567889999976543222 22222221 11
Q ss_pred cccCCCCCCcceeecccccc--cccccCCCCCCCCChHH-HHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 534 RHYNSHTDNDDSSDEHLANN--EHFLSAPENYERVDFSP-DFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 534 ~H~n~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~-~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
--.--+.+.+|.||||++|| -..|...+ .+...- |+.| ++++.|++|.| ..|+||||||
T Consensus 695 yySFQDkdnLYFVMdYIPGGDmMSLLIrmg---IFeE~LARFYI-AEltcAiesVH---kmGFIHRDiK 756 (1034)
T KOG0608|consen 695 YYSFQDKDNLYFVMDYIPGGDMMSLLIRMG---IFEEDLARFYI-AELTCAIESVH---KMGFIHRDIK 756 (1034)
T ss_pred EEEeccCCceEEEEeccCCccHHHHHHHhc---cCHHHHHHHHH-HHHHHHHHHHH---hccceecccC
Confidence 11114778899999999999 44454322 122222 4444 49999999999 9999999997
|
|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-07 Score=83.34 Aligned_cols=118 Identities=20% Similarity=0.303 Sum_probs=81.8
Q ss_pred HHHHHHHhhhccccceecccCCceEEEEE-eCCCCEEEEEEecCCchhhHHHHHHhhc--cccc---------cCCCCCC
Q 007553 475 FEEMIQATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLETSST--DFRH---------YNSHTDN 542 (599)
Q Consensus 475 ~~~l~~at~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H---------~n~~~~~ 542 (599)
.+++..+ +.+...+.||.|+||.+|.|. ..+|+.||+|.=...... ....-|..+ .++| -...++.
T Consensus 8 ~~~~iv~-gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~h-pqL~yEskvY~iL~~g~GiP~i~~y~~e~~y 85 (341)
T KOG1163|consen 8 LEELIVG-GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKH-PQLLYESKVYRILQGGVGIPHIRHYGTEKDY 85 (341)
T ss_pred hhhheec-cceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCC-cchhHHHHHHHHhccCCCCchhhhhcccccc
Confidence 3444433 345566789999999999998 578999999965433222 223334443 2222 2255666
Q ss_pred cceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
-.||||..--- ++...-. ...++..+.+-.|-|+..-++|+| ...+||||||
T Consensus 86 nvlVMdLLGPsLEdLfnfC--~R~ftmkTvLMLaDQml~RiEyvH---~r~fiHRDIK 138 (341)
T KOG1163|consen 86 NVLVMDLLGPSLEDLFNFC--SRRFTMKTVLMLADQMLSRIEYVH---LRNFIHRDIK 138 (341)
T ss_pred ceeeeeccCccHHHHHHHH--hhhhhHHhHHHHHHHHHHHHHHHH---hhccccccCC
Confidence 78999987555 5554422 233788889999999999999999 8999999997
|
|
| >PRK12274 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-07 Score=82.51 Aligned_cols=98 Identities=10% Similarity=0.010 Sum_probs=70.6
Q ss_pred ccceecccCCceEEEEEeCCCCEEEEEEecCCchh-----hHHHHHHhhc--cccc-cC----CCCCCcceeecccccc-
Q 007553 487 IKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE-----ELAFLETSST--DFRH-YN----SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~-----~~~f~~e~~~--~l~H-~n----~~~~~~~lv~e~~~~G- 553 (599)
....+++|+||+||.+.- ++..++.+.+.....- ...|.+|+++ ++.| ++ ...+..+++|||++++
T Consensus 6 ~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~~~~lvmeyI~G~~ 84 (218)
T PRK12274 6 VNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWDGRHLDRSYLAGAA 84 (218)
T ss_pred cceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEcCEEEEEeeecCcc
Confidence 345699999999996654 6788887777654331 2357889988 8854 33 3345579999999977
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
.+.+.. ....++.|++++++|+| ..+|+||||
T Consensus 85 L~~~~~~----------~~~~~~~qi~~~L~~lH---~~GIvHrDL 117 (218)
T PRK12274 85 MYQRPPR----------GDLAYFRAARRLLQQLH---RCGVAHNDL 117 (218)
T ss_pred HHhhhhh----------hhHHHHHHHHHHHHHHH---HCcCccCCC
Confidence 322210 12457789999999999 889999999
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.6e-08 Score=91.84 Aligned_cols=106 Identities=31% Similarity=0.377 Sum_probs=48.6
Q ss_pred CCCEEeccCCcccccCC-ccCC-CCCCCcEEEeecCcCCcc--CCccccCCCcCCEEeeecccccccCCccccCCCcccE
Q 007553 69 DLLELNLSYNILNGSIP-LEFG-NLKDLYDLRLQGNKLDGL--IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVS 144 (599)
Q Consensus 69 ~L~~L~L~~n~~~~~~p-~~~~-~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 144 (599)
.++.|.+.++.|..... ..|+ ..+.+++|||.+|+|++- +-.-+.+||.|++|+++.|++...+...-..+.+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44455555555432211 1122 345566666666666532 2222345566666666666555332111123445555
Q ss_pred EecccCccCCCC-cccccCCCCCCeeecccc
Q 007553 145 LFLDNNNLTGPI-PSTLYHLNQLSTLYLAYN 174 (599)
Q Consensus 145 L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n 174 (599)
|-|.+..+.... ...+..+|.+++|.++.|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 555555444221 123344455555555444
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.1e-07 Score=100.49 Aligned_cols=111 Identities=22% Similarity=0.201 Sum_probs=83.0
Q ss_pred HhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHH--Hhhcccc--------ccC---CCCCCcceee
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLE--TSSTDFR--------HYN---SHTDNDDSSD 547 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~--e~~~~l~--------H~n---~~~~~~~lv~ 547 (599)
.-..|.....+|+|+||.||+|.-.+|+.||+|.=+.... .+|.- ++.-+|+ |-. .-.+.-++|+
T Consensus 696 ~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~--WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ 773 (974)
T KOG1166|consen 696 GGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP--WEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVS 773 (974)
T ss_pred cceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCc--eeeeehHHHHHhhchhhhcchHHHHHHHccCCcceeee
Confidence 3345666788999999999999988899999998655321 11111 1111333 221 3346678999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||.+.| -+++. ..+..+|.--+-++.|+++-+.+|| ..+|||+|||
T Consensus 774 ey~~~Gtlld~~N---~~~~m~e~lv~~~~~qml~ive~lH---~~~IIHgDiK 821 (974)
T KOG1166|consen 774 EYSPYGTLLDLIN---TNKVMDEYLVMFFSCQMLRIVEHLH---AMGIIHGDIK 821 (974)
T ss_pred eccccccHHHhhc---cCCCCCchhhhHHHHHHHHHHHHHH---hcceecccCC
Confidence 999999 77777 3456899999999999999999999 9999999997
|
|
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.6e-07 Score=89.87 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=78.9
Q ss_pred hccccceecccCCceEEEEEeCCC--CEEEEEEecCCchh-hHHHHHHhhc--ccc------ccC-----C--CCCCcce
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSG--RVVALKKLHRSETE-ELAFLETSST--DFR------HYN-----S--HTDNDDS 545 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g--~~vavK~l~~~~~~-~~~f~~e~~~--~l~------H~n-----~--~~~~~~l 545 (599)
.|.....||+|+||+||.+.-... ..+|+|.-...... ...+.-|+.+ .+. |-- . ....-++
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i 98 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI 98 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence 566778899999999999995332 46788766543221 1134445554 333 111 1 3445689
Q ss_pred eecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+..--. .+...... ...++-.+.++||.|+..+|.||| ..+++|||+|
T Consensus 99 VM~l~G~sL~dl~~~~~-~~~fs~~T~l~ia~q~l~~l~~lH---~~G~iHRDiK 149 (322)
T KOG1164|consen 99 VMSLLGPSLEDLRKRNP-PGRFSRKTVLRIAIQNLNALEDLH---SKGFIHRDIK 149 (322)
T ss_pred EEeccCccHHHHHHhCC-CCCcCHhHHHHHHHHHHHHHHHHH---hcCcccCCcC
Confidence 98888766 66443322 456899999999999999999999 9999999996
|
|
| >PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.4e-07 Score=83.70 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=70.4
Q ss_pred cceec-ccCCceEEEEEeCCCCEEEEEEecCCc--------------hhhHHHHHHhhc--cccccC-----------CC
Q 007553 488 KYCIG-TGGYGSVYRAQLSSGRVVALKKLHRSE--------------TEELAFLETSST--DFRHYN-----------SH 539 (599)
Q Consensus 488 ~~~lg-~g~~g~v~~~~~~~g~~vavK~l~~~~--------------~~~~~f~~e~~~--~l~H~n-----------~~ 539 (599)
...+| .|+.|+||..... +..++||+..... .....+.+|+++ .++|++ ..
T Consensus 36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~ 114 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR 114 (239)
T ss_pred CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence 35687 8999999999884 7788998875321 112356778887 888876 11
Q ss_pred CCCc---ceeecccccc---cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 540 TDND---DSSDEHLANN---EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 540 ~~~~---~lv~e~~~~G---~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.... ++|+||++++ .+++... +++.. .+.+|+.++.+|| ..+|+|||||
T Consensus 115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~----~l~~~----~~~~i~~~l~~lH---~~GI~HrDlk 169 (239)
T PRK01723 115 HGLFYRADILIERIEGARDLVALLQEA----PLSEE----QWQAIGQLIARFH---DAGVYHADLN 169 (239)
T ss_pred cCcceeeeEEEEecCCCCCHHHHHhcC----CCCHH----HHHHHHHHHHHHH---HCCCCCCCCC
Confidence 1112 4999999985 5566532 23332 3668999999999 8999999996
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.7e-09 Score=98.16 Aligned_cols=56 Identities=27% Similarity=0.237 Sum_probs=24.3
Q ss_pred CCEEEcccCcCcc-cCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeec
Q 007553 46 LKVLDLSYNRLTG-TIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101 (599)
Q Consensus 46 L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 101 (599)
|++|||+...|+- .+..-++.|.+|+.|.|.++.+.+.+-..+.+-.+|+.|+|+.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 4444554444431 1111223344444555555444444444444444455555544
|
|
| >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.9e-07 Score=91.50 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=68.8
Q ss_pred cceecccCCceEEEEEeCCCCEEEEEEecCCchhh-----------------------------------------HHHH
Q 007553 488 KYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEE-----------------------------------------LAFL 526 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~-----------------------------------------~~f~ 526 (599)
...+|.|++|+||+|++.+|+.||||..++..... ..|.
T Consensus 122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~ 201 (437)
T TIGR01982 122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR 201 (437)
T ss_pred CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence 35799999999999999999999999986642110 0133
Q ss_pred HHhhc--cc----cc-cC--------CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHH-HHhhhhCC
Q 007553 527 ETSST--DF----RH-YN--------SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKK-GFKLLADR 588 (599)
Q Consensus 527 ~e~~~--~l----~H-~n--------~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~-gl~yLH~~ 588 (599)
.|... ++ +| ++ ......++||||++|+ .++......+ . ++.++|.++++ .+..+|
T Consensus 202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~--~---~~~~ia~~~~~~~l~ql~-- 274 (437)
T TIGR01982 202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAG--L---DRKALAENLARSFLNQVL-- 274 (437)
T ss_pred HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcC--C---CHHHHHHHHHHHHHHHHH--
Confidence 33332 22 22 22 1234568999999998 6665422111 2 34567777776 467788
Q ss_pred CCccccccccC
Q 007553 589 KYRKSYYQRLY 599 (599)
Q Consensus 589 ~~~~i~Hrdl~ 599 (599)
..+++|||++
T Consensus 275 -~~g~~H~D~h 284 (437)
T TIGR01982 275 -RDGFFHADLH 284 (437)
T ss_pred -hCCceeCCCC
Confidence 7899999985
|
This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.2e-08 Score=88.94 Aligned_cols=182 Identities=24% Similarity=0.197 Sum_probs=91.5
Q ss_pred CCCCCCEEeccCCcccc--cCCccCCCCCCCcEEEeecCcCCccCCccc-cCCCcCCEEeeeccccccc-CCccccCCCc
Q 007553 66 SLRDLLELNLSYNILNG--SIPLEFGNLKDLYDLRLQGNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGR-LPQEVGNLKN 141 (599)
Q Consensus 66 ~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~ 141 (599)
.++.++.|||..|.++. .+-..+.+||.|+.|+|+.|++...+. .+ ..+.+|++|-+.++.+.=. ....+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 46778888888887764 222234578888888888888764432 22 3556788888877765421 2334667788
Q ss_pred ccEEecccCccCCCC--cccccC-CCCCCeeecccccccccC--ccccCCCCCCCEEEccCCcccccC-chhccCCCCCC
Q 007553 142 LVSLFLDNNNLTGPI--PSTLYH-LNQLSTLYLAYNNLVGPL--PKEVGNLKNLDSLLLNRNNLTGPI-PSTIGFLNLLD 215 (599)
Q Consensus 142 L~~L~l~~n~i~~~~--~~~l~~-l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~ 215 (599)
+++|.++.|++.... ...... -+.+++|....|...... -.--.-+|++..+.+..|.+.... ...+..++.+-
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 888888877543211 111111 124444444444322100 000112356666666666553211 11223333444
Q ss_pred EEeCCCCcCcccC-cccCCCCCCCCEEEccCCcC
Q 007553 216 ELRLSHNRLDGPI-PPTIGNLTYLTSLDLSSNQL 248 (599)
Q Consensus 216 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l 248 (599)
.|+|+.+++...- -+.+.+++.|..|.++++.+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 4555544444221 12233444444444444433
|
|
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-07 Score=88.23 Aligned_cols=86 Identities=22% Similarity=0.086 Sum_probs=69.1
Q ss_pred CCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------------CCCCCcceeecccccc-cccccCCCCCCC
Q 007553 506 SGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------------SHTDNDDSSDEHLANN-EHFLSAPENYER 565 (599)
Q Consensus 506 ~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------------~~~~~~~lv~e~~~~G-~~~l~~~~~~~~ 565 (599)
.+++||+|++...... ++.-.+|..+ .++|+| ....+.++|||||... ++.++. .
T Consensus 40 ~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~~nl~~vi~~-----e 114 (369)
T KOG0665|consen 40 LGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMDANLCQVILM-----E 114 (369)
T ss_pred ccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhhhHHHHHHHH-----h
Confidence 4789999987543222 4556677777 999999 2345678999999988 777762 3
Q ss_pred CChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 566 VDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 566 l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|..+...|..|+..|+.||| ..+|+|||||
T Consensus 115 lDH~tis~i~yq~~~~ik~lh---s~~IihRdLk 145 (369)
T KOG0665|consen 115 LDHETISYILYQMLCGIKHLH---SAGIIHRDLK 145 (369)
T ss_pred cchHHHHHHHHHHHHHHHHHH---hcceeecccC
Confidence 788999999999999999999 8999999997
|
|
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.28 E-value=6e-07 Score=89.88 Aligned_cols=107 Identities=17% Similarity=0.058 Sum_probs=83.9
Q ss_pred cceecccCCceEEEEEeCCCCEEEEEEecCCchh---hHHHHHHhhc--ccc-ccC--------CCCCCcceeecccccc
Q 007553 488 KYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE---ELAFLETSST--DFR-HYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~-H~n--------~~~~~~~lv~e~~~~G 553 (599)
...||+||...||++...+.+.+|.|++.....+ ...|..||.+ +++ |.+ ...+.+||||||=+..
T Consensus 366 lk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~Gd~D 445 (677)
T KOG0596|consen 366 LKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMECGDID 445 (677)
T ss_pred HHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeeccccc
Confidence 3459999999999999888888998887543322 4679999998 664 344 5678899999997777
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++|+.+. ....+| -+..+-.|+..|+.|.| ..+|||-|||
T Consensus 446 L~kiL~k~~-~~~~~~-~lk~ywkqML~aV~~IH---~~gIVHSDLK 487 (677)
T KOG0596|consen 446 LNKILKKKK-SIDPDW-FLKFYWKQMLLAVKTIH---QHGIVHSDLK 487 (677)
T ss_pred HHHHHHhcc-CCCchH-HHHHHHHHHHHHHHHHH---HhceeecCCC
Confidence 88888654 334567 45667789999999999 8999999997
|
|
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.7e-07 Score=85.22 Aligned_cols=113 Identities=19% Similarity=0.107 Sum_probs=83.3
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccc--cC------------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRH--YN------------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H--~n------------~~~~~~~l 545 (599)
+.|..-..+|+|.||.|..+.- ..+..||||+++.-......-.-|+.+ ++.+ |+ .-.+..++
T Consensus 89 ~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCi 168 (415)
T KOG0671|consen 89 NRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICI 168 (415)
T ss_pred cceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEE
Confidence 3444455699999999998873 347899999997655444445556666 5532 23 23455678
Q ss_pred eecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+|.|.-- .+||... +..+..-.+...|+.|+.++|+||| ..+++|=|||
T Consensus 169 vfellG~S~~dFlk~N-~y~~fpi~~ir~m~~QL~~sv~fLh---~~kl~HTDLK 219 (415)
T KOG0671|consen 169 VFELLGLSTFDFLKEN-NYIPFPIDHIRHMGYQLLESVAFLH---DLKLTHTDLK 219 (415)
T ss_pred EEeccChhHHHHhccC-CccccchHHHHHHHHHHHHHHHHHH---hcceeecCCC
Confidence 88888766 8888752 2345677889999999999999999 8999999997
|
|
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-06 Score=80.47 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=79.6
Q ss_pred eecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc-ccccc--C--------CCCCCcceeecccccc-c
Q 007553 490 CIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST-DFRHY--N--------SHTDNDDSSDEHLANN-E 554 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~-~l~H~--n--------~~~~~~~lv~e~~~~G-~ 554 (599)
.+|.|..|.|++++++ .|..+|||.+...... ....+..+.+ .+.|. - ......++-||.|... +
T Consensus 99 dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs~C~e 178 (391)
T KOG0983|consen 99 DLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMSTCAE 178 (391)
T ss_pred hhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHHHHHH
Confidence 4899999999999975 5899999999775432 2344445555 55553 3 4566677889999988 7
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 555 HFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 555 ~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+.|.. ...++...-.-+|...|.+||.||.+ +.+|+|||+|
T Consensus 179 kLlkr--ik~piPE~ilGk~tva~v~AL~YLKe--KH~viHRDvK 219 (391)
T KOG0983|consen 179 KLLKR--IKGPIPERILGKMTVAIVKALYYLKE--KHGVIHRDVK 219 (391)
T ss_pred HHHHH--hcCCchHHhhhhhHHHHHHHHHHHHH--hcceeecccC
Confidence 77764 23346666677889999999999984 6799999986
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1e-07 Score=86.87 Aligned_cols=183 Identities=20% Similarity=0.209 Sum_probs=95.0
Q ss_pred CCCCcEEEeecCcCCcc----CCccccCCCcCCEEeeeccccc---cc-------CCccccCCCcccEEecccCccCCCC
Q 007553 91 LKDLYDLRLQGNKLDGL----IPSSIGNLTNLTHLDLSLNQLS---GR-------LPQEVGNLKNLVSLFLDNNNLTGPI 156 (599)
Q Consensus 91 l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~i~---~~-------~~~~l~~l~~L~~L~l~~n~i~~~~ 156 (599)
+..+++++||+|.|... +...+++-.+|+..++++-... .. +..++.+|++|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 55566666666665432 2334445556666666543211 11 2234567788888888888777655
Q ss_pred ccc----ccCCCCCCeeeccccccccc----Cc---------cccCCCCCCCEEEccCCcccccCc----hhccCCCCCC
Q 007553 157 PST----LYHLNQLSTLYLAYNNLVGP----LP---------KEVGNLKNLDSLLLNRNNLTGPIP----STIGFLNLLD 215 (599)
Q Consensus 157 ~~~----l~~l~~L~~L~l~~n~~~~~----~~---------~~l~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~ 215 (599)
|+. +..-+.|.+|.+++|.+.-. +. +....-|.|++.....|++..... ..+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 543 45556788888887765421 11 112234567777777776642111 1122334566
Q ss_pred EEeCCCCcCcccC-----cccCCCCCCCCEEEccCCcCCCCCC----cccCCCCCCCEEeccCccee
Q 007553 216 ELRLSHNRLDGPI-----PPTIGNLTYLTSLDLSSNQLSGLLP----REVGNLKYLDSLSLDRNNLI 273 (599)
Q Consensus 216 ~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~ 273 (599)
.+.+..|.|...- -..+..+.+|+.||+..|-++.... ..+...+.|+.|.+..|-++
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 6666666655221 1123345566666666665553211 12222334555555555544
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=80.01 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=82.3
Q ss_pred cceecccCCceEEEEEeCCCCEEEEEEecCCch----hhHHHHHHhhc--ccccc-C--------CCCCCcceeeccccc
Q 007553 488 KYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET----EELAFLETSST--DFRHY-N--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~-n--------~~~~~~~lv~e~~~~ 552 (599)
...+|.|.||.||++... ..+|+|.+..... ....|.+|+.+ .+.|+ + ......++++||+.+
T Consensus 5 ~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (384)
T COG0515 5 LRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDG 82 (384)
T ss_pred EEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCCC
Confidence 456899999999999975 7889999866432 24678888887 88877 5 233336899999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++........+.......++.|++.|++|+| ..+++|||++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H---~~~~~hrd~k 128 (384)
T COG0515 83 GSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH---SKGIIHRDIK 128 (384)
T ss_pred CcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence 9 544443211024788889999999999999999 7779999986
|
|
| >KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.1e-06 Score=76.61 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=75.9
Q ss_pred hccccceecccCCceEEEEE-eCCCCEEEEEEecCCchhhHHHHHHhhc------cccccC-----CCCCCcceeecccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLETSST------DFRHYN-----SHTDNDDSSDEHLA 551 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~~~~f~~e~~~------~l~H~n-----~~~~~~~lv~e~~~ 551 (599)
.|.....||+|+||+.+.|+ +-++++||||.=.. ..+..+.-.|-.. .-.=|+ -.+..=.||+|..-
T Consensus 29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPr-kS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLLG 107 (449)
T KOG1165|consen 29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPR-KSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLLG 107 (449)
T ss_pred cceeccccccCcceeeecccccccCceEEEEeccc-cCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhhC
Confidence 35566779999999999998 56899999995322 2222233333333 112222 34444467888775
Q ss_pred cc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
-- ++...-. +..++..+.+.||.|+..-|+|+| ++-.|+||+|
T Consensus 108 PSLEDLFD~C--gR~FSvKTV~miA~Qmi~rie~vH---~k~LIYRDIK 151 (449)
T KOG1165|consen 108 PSLEDLFDLC--GRRFSVKTVAMIAKQMITRIEYVH---EKDLIYRDIK 151 (449)
T ss_pred cCHHHHHHHh--cCcccHHhHHHHHHHHHHHHHHHH---hcceeecccC
Confidence 55 5544432 234788899999999999999999 8999999997
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.7e-05 Score=66.14 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=31.5
Q ss_pred cccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCC
Q 007553 10 LSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFG 89 (599)
Q Consensus 10 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 89 (599)
|+..+|.++++|+.+.+.. .+..--...|..+++|+.+.+..+ +......+|.++++|+.+.+.+ .+.......|.
T Consensus 3 i~~~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 4444555555555555542 222222233444545555555443 3323333444444455555543 22222333444
Q ss_pred CCCCCcEEEee
Q 007553 90 NLKDLYDLRLQ 100 (599)
Q Consensus 90 ~l~~L~~L~L~ 100 (599)
.+++|+.+++.
T Consensus 79 ~~~~l~~i~~~ 89 (129)
T PF13306_consen 79 NCTNLKNIDIP 89 (129)
T ss_dssp T-TTECEEEET
T ss_pred ccccccccccC
Confidence 44444444443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.4e-05 Score=70.15 Aligned_cols=41 Identities=32% Similarity=0.361 Sum_probs=16.8
Q ss_pred ccCCCcCCEEeeecccccccCCccccCCCcccEEecccCcc
Q 007553 112 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNL 152 (599)
Q Consensus 112 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i 152 (599)
|..+++|.+|.+++|+|+.+-|.--.-+++|+.|.|.+|+|
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 33444444444444444433333223333444444444443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.1e-06 Score=54.52 Aligned_cols=36 Identities=39% Similarity=0.592 Sum_probs=14.1
Q ss_pred CCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCC
Q 007553 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105 (599)
Q Consensus 69 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 105 (599)
+|++|++++|+++ .+|..+.+|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 22223444444444444444443
|
... |
| >cd05151 ChoK Choline Kinase (ChoK) | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.3e-05 Score=70.28 Aligned_cols=100 Identities=9% Similarity=-0.032 Sum_probs=65.3
Q ss_pred ceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeecccccc-ccccc
Q 007553 489 YCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN-EHFLS 558 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G-~~~l~ 558 (599)
..++.|.++.||++... |..+++|...........+..|+.. .+.+.+ ...+..++||||++++ -....
T Consensus 4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~~~~lv~e~i~G~~l~~~~ 82 (170)
T cd05151 4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFDPETGVLITEFIEGSELLTED 82 (170)
T ss_pred eecCCcccCceEEEEEC-CeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEeCCCCeEEEEecCCCcccccc
Confidence 34788999999999874 7889999876543222234555555 333322 3334468999999987 21111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhhhhCCC--CccccccccC
Q 007553 559 APENYERVDFSPDFSIADQSKKGFKLLADRK--YRKSYYQRLY 599 (599)
Q Consensus 559 ~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~--~~~i~Hrdl~ 599 (599)
. ....++.+++++|+.||... ...++|+|++
T Consensus 83 -------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~ 115 (170)
T cd05151 83 -------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLL 115 (170)
T ss_pred -------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCC
Confidence 0 11345679999999999543 3457999985
|
The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.8e-06 Score=54.02 Aligned_cols=38 Identities=42% Similarity=0.617 Sum_probs=29.7
Q ss_pred CCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccc
Q 007553 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNG 82 (599)
Q Consensus 44 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 82 (599)
++|++|++++|+|+ .+|..+++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 47888999999988 566668889999999999998874
|
... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.8e-06 Score=77.69 Aligned_cols=87 Identities=25% Similarity=0.322 Sum_probs=46.6
Q ss_pred CCCCCEEEcccCcCccc----CCcCCCCCCCCCEEeccCCcc---ccc-------CCccCCCCCCCcEEEeecCcCCccC
Q 007553 43 LSRLKVLDLSYNRLTGT----IPSEIGSLRDLLELNLSYNIL---NGS-------IPLEFGNLKDLYDLRLQGNKLDGLI 108 (599)
Q Consensus 43 ~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~---~~~-------~p~~~~~l~~L~~L~L~~n~~~~~~ 108 (599)
+..+..++|++|.|... +...+++-.+|+..+++.--. ... +..++.+||+|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 55666667777666421 222344455666666654311 111 1123456677777777777665444
Q ss_pred Ccc----ccCCCcCCEEeeeccccc
Q 007553 109 PSS----IGNLTNLTHLDLSLNQLS 129 (599)
Q Consensus 109 ~~~----~~~l~~L~~L~l~~n~i~ 129 (599)
|.. +++-..|++|.+++|.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC
Confidence 332 344566777777777654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.4e-07 Score=72.53 Aligned_cols=85 Identities=27% Similarity=0.321 Sum_probs=48.8
Q ss_pred CCCCCCEEEcccCcCcccCCcCC-CCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 42 ALSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 42 ~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
....|+..+|++|.+. ..|..| ..++.+++|+|++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-.
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 3445555566666665 333333 34456666666666666 45555666666666666666665 34555555666666
Q ss_pred Eeeeccccc
Q 007553 121 LDLSLNQLS 129 (599)
Q Consensus 121 L~l~~n~i~ 129 (599)
|+..+|.+.
T Consensus 128 Lds~~na~~ 136 (177)
T KOG4579|consen 128 LDSPENARA 136 (177)
T ss_pred hcCCCCccc
Confidence 666555554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.4e-05 Score=68.65 Aligned_cols=103 Identities=24% Similarity=0.192 Sum_probs=54.4
Q ss_pred CCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccC-CccccCCCcccEEec
Q 007553 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL-PQEVGNLKNLVSLFL 147 (599)
Q Consensus 69 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l 147 (599)
....+||++|.+... ..|..++.|.+|.|.+|.|+.+-|.--..+++|+.|.+.+|+|.... -+.+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455566666655421 23555566666666666666544433334455666666666554321 123455566666666
Q ss_pred ccCccCCCC---cccccCCCCCCeeeccc
Q 007553 148 DNNNLTGPI---PSTLYHLNQLSTLYLAY 173 (599)
Q Consensus 148 ~~n~i~~~~---~~~l~~l~~L~~L~l~~ 173 (599)
-+|.++..- ...+..+|+|+.||...
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 666555321 11345566666666644
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.1e-06 Score=90.56 Aligned_cols=134 Identities=22% Similarity=0.252 Sum_probs=64.1
Q ss_pred CCCCEEEcccCcC-cccCCcCCC-CCCCCCEEeccCCccccc-CCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 44 SRLKVLDLSYNRL-TGTIPSEIG-SLRDLLELNLSYNILNGS-IPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 44 ~~L~~L~l~~n~~-~~~~~~~~~-~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
.+|++||+++... ....|..++ -+|.|+.|.+++-.+... .-.-+.++++|..||++++.++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4455566655432 111222222 255666666655444311 111233555666666666655533 45555666666
Q ss_pred Eeeecccccc-cCCccccCCCcccEEecccCccCCC------CcccccCCCCCCeeeccccccccc
Q 007553 121 LDLSLNQLSG-RLPQEVGNLKNLVSLFLDNNNLTGP------IPSTLYHLNQLSTLYLAYNNLVGP 179 (599)
Q Consensus 121 L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~i~~~------~~~~l~~l~~L~~L~l~~n~~~~~ 179 (599)
|.+.+-.+.. ..-..+-+|++|++||+|....... .-+.-..+|.|+.||.|++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 6555544432 1112344566666666665433221 011223466777777776665543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.5e-05 Score=76.04 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=84.5
Q ss_pred cCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecC-cCCccCCccccCCCcC
Q 007553 40 TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN-KLDGLIPSSIGNLTNL 118 (599)
Q Consensus 40 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~l~~L 118 (599)
+..|+++++|++++|.++ .+|. --.+|++|.+++|.-...+|..+. ++|+.|++++| .+. .+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence 345788899999988887 5562 123689999988655446665553 58899999988 443 344 347
Q ss_pred CEEeeecccccccCCccccCC-CcccEEecccCc-cCC-CCcccccCC-CCCCeeecccccccccCccccCCCCCCCEEE
Q 007553 119 THLDLSLNQLSGRLPQEVGNL-KNLVSLFLDNNN-LTG-PIPSTLYHL-NQLSTLYLAYNNLVGPLPKEVGNLKNLDSLL 194 (599)
Q Consensus 119 ~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~n~-i~~-~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 194 (599)
+.|+++.+.... +..+ ++|+.|.+.+++ ... .++. .+ ++|++|++++|.... .|..+. .+|+.|.
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCccc-Cccccc--ccCcEEE
Confidence 777777655431 1222 356777775432 110 1111 12 479999999887552 344333 5889999
Q ss_pred ccCCc
Q 007553 195 LNRNN 199 (599)
Q Consensus 195 l~~n~ 199 (599)
++.+.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 87763
|
|
| >PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.9e-05 Score=78.65 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=29.2
Q ss_pred hccccceecccCCceEEEEEeCC-CCEEEEEEecCC
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSS-GRVVALKKLHRS 518 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~-g~~vavK~l~~~ 518 (599)
+|.. ..+|+|++|+||+|++++ |+.||||.+++.
T Consensus 121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~ 155 (537)
T PRK04750 121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD 155 (537)
T ss_pred hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence 4554 579999999999999987 999999999754
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.8e-05 Score=63.31 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=54.8
Q ss_pred ccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcC
Q 007553 39 ETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNL 118 (599)
Q Consensus 39 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 118 (599)
.|.++++|+.+.+.. .++.....+|.++++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 356677777777764 455455556777777777777664 5444555667776777777754 3333344556666777
Q ss_pred CEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCC
Q 007553 119 THLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQL 166 (599)
Q Consensus 119 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L 166 (599)
+.+.+..+ +.......+.+. +|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77776544 443444455555 666666554 2332333345544444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=73.49 Aligned_cols=33 Identities=15% Similarity=0.380 Sum_probs=16.2
Q ss_pred CCCcccEEecccCccCCCCcccccCCC-CCCeeeccccc
Q 007553 138 NLKNLVSLFLDNNNLTGPIPSTLYHLN-QLSTLYLAYNN 175 (599)
Q Consensus 138 ~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~ 175 (599)
.+.+++.|++++|.++. +| .+| +|++|.+++|.
T Consensus 50 ~~~~l~~L~Is~c~L~s-LP----~LP~sLtsL~Lsnc~ 83 (426)
T PRK15386 50 EARASGRLYIKDCDIES-LP----VLPNELTEITIENCN 83 (426)
T ss_pred HhcCCCEEEeCCCCCcc-cC----CCCCCCcEEEccCCC
Confidence 34556666666665442 23 122 35555555543
|
|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.5e-06 Score=80.92 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=75.1
Q ss_pred ceecccCCceEEEEEeCCCC-EEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 489 YCIGTGGYGSVYRAQLSSGR-VVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~g~-~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
-.+|-|+||.|-..+..... .+|.|.++.... +..-...|-.+ ..+.|- -+.+..||.||=|-+|
T Consensus 426 aTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEaClGG 505 (732)
T KOG0614|consen 426 ATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEACLGG 505 (732)
T ss_pred hhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHHhhcCc
Confidence 34999999999988875332 378887754321 11112233333 555444 5678889999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...|++++ .++-.+..=++..|.+|++||| .++||+||||
T Consensus 506 ElWTiLrdRg---~Fdd~tarF~~acv~EAfeYLH---~k~iIYRDLK 547 (732)
T KOG0614|consen 506 ELWTILRDRG---SFDDYTARFYVACVLEAFEYLH---RKGIIYRDLK 547 (732)
T ss_pred hhhhhhhhcC---CcccchhhhhHHHHHHHHHHHH---hcCceeccCC
Confidence 77777543 3677777778889999999999 9999999997
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.4e-06 Score=71.29 Aligned_cols=88 Identities=22% Similarity=0.274 Sum_probs=76.0
Q ss_pred ccCCCCCcEEeeCCCCCCeecCCccc-CCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCC
Q 007553 15 FTCFPNLVTFRIWGTRFLSGRIPSET-GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKD 93 (599)
Q Consensus 15 l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 93 (599)
+++...|+..++++ |.+. .+|+.| .+++.++.|+|++|.|+ .+|..++.++.|+.|+++.|.+. ..|..|..|.+
T Consensus 49 l~~~~el~~i~ls~-N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 49 LSKGYELTKISLSD-NGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK 124 (177)
T ss_pred HhCCceEEEEeccc-chhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence 45667888899998 8887 455555 67789999999999998 78888999999999999999998 78888888999
Q ss_pred CcEEEeecCcCCc
Q 007553 94 LYDLRLQGNKLDG 106 (599)
Q Consensus 94 L~~L~L~~n~~~~ 106 (599)
|-.|+..+|.+..
T Consensus 125 l~~Lds~~na~~e 137 (177)
T KOG4579|consen 125 LDMLDSPENARAE 137 (177)
T ss_pred HHHhcCCCCcccc
Confidence 9999999998863
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=1e-05 Score=87.61 Aligned_cols=83 Identities=25% Similarity=0.331 Sum_probs=38.6
Q ss_pred CCCCCcEEEeecCcCCcc-CCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCC-CcccccCCCCCC
Q 007553 90 NLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGP-IPSTLYHLNQLS 167 (599)
Q Consensus 90 ~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~ 167 (599)
.||.|+.|.+++-.+... .-.-..++++|..||+|+++++.. .+++.|++|++|.+.+=.+... .-..+.+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 355555555555443211 112233455555555555555533 4455555555555555443321 111334455555
Q ss_pred eeecccc
Q 007553 168 TLYLAYN 174 (599)
Q Consensus 168 ~L~l~~n 174 (599)
.||+|..
T Consensus 224 vLDIS~~ 230 (699)
T KOG3665|consen 224 VLDISRD 230 (699)
T ss_pred eeecccc
Confidence 5555543
|
|
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.5e-05 Score=75.09 Aligned_cols=121 Identities=19% Similarity=0.186 Sum_probs=89.7
Q ss_pred cHHHHHHHhhhccccceecccCCceEEEEE-eCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------------
Q 007553 474 TFEEMIQATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLETSST--DFRHYN------------- 537 (599)
Q Consensus 474 ~~~~l~~at~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n------------- 537 (599)
.+.|+... .|......|+|-|+.|.+|. ...|+.||||++.........=++|+++ +++-.-
T Consensus 425 ~igE~LD~--RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~ 502 (752)
T KOG0670|consen 425 RIGELLDS--RYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRH 502 (752)
T ss_pred ehhhhhcc--eeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHH
Confidence 44444432 23333457999999999998 3458899999998766554555566666 443221
Q ss_pred -CCCCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 -SHTDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 -~~~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+.+|||+|-..-. .+.|..-+.+..|.......+|.|+--||.+|- ..+|+|-|||
T Consensus 503 F~hknHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK---~c~vlHaDIK 563 (752)
T KOG0670|consen 503 FKHKNHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLK---KCGVLHADIK 563 (752)
T ss_pred hhhcceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHH---hcCeeecccC
Confidence 4667899999999888 888876555556777778889999999999999 8899999986
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=2.8e-05 Score=71.38 Aligned_cols=110 Identities=25% Similarity=0.189 Sum_probs=65.3
Q ss_pred CCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecC--cCCccCCccccCCCcCCEEeeeccccccc-CCccc
Q 007553 60 IPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN--KLDGLIPSSIGNLTNLTHLDLSLNQLSGR-LPQEV 136 (599)
Q Consensus 60 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n--~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l 136 (599)
+......+..|+.|++.+..++.. ..|..|++|+.|.++.| ++.+-++.....+++|++|++++|.|... --..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 444444556677777766666532 23556777777777777 55544444455567777777777776621 01224
Q ss_pred cCCCcccEEecccCccCCCCc---ccccCCCCCCeeec
Q 007553 137 GNLKNLVSLFLDNNNLTGPIP---STLYHLNQLSTLYL 171 (599)
Q Consensus 137 ~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l 171 (599)
..+.+|..|++.+|..+...- ..|.-+++|+.|+-
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 566677788888877665211 23455667766543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=1.1e-06 Score=85.17 Aligned_cols=295 Identities=17% Similarity=0.073 Sum_probs=161.5
Q ss_pred CCCcEEeeCCCCCCeecCCccc-CCCCCCCEEEcccCc-CcccCCcCC-CCCCCCCEEeccCC-cccccCCccC-CCCCC
Q 007553 19 PNLVTFRIWGTRFLSGRIPSET-GALSRLKVLDLSYNR-LTGTIPSEI-GSLRDLLELNLSYN-ILNGSIPLEF-GNLKD 93 (599)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~L~~n-~~~~~~p~~~-~~l~~ 93 (599)
-.|+.|++.||....+.-...+ ..|+++++|++.++. +++..-..+ ..+++|+.|+|..| .++...-..+ ..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3577888888555443322223 568888888887775 332222223 35788888888885 4554333322 36788
Q ss_pred CcEEEeecCc-CCcc-CCccccCCCcCCEEeeeccccccc--CCccccCCCcccEEecccCccCCCCc--ccccCCCCCC
Q 007553 94 LYDLRLQGNK-LDGL-IPSSIGNLTNLTHLDLSLNQLSGR--LPQEVGNLKNLVSLFLDNNNLTGPIP--STLYHLNQLS 167 (599)
Q Consensus 94 L~~L~L~~n~-~~~~-~~~~~~~l~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~l~~n~i~~~~~--~~l~~l~~L~ 167 (599)
|++|+++.|. +++. +...+.++..++.+.+.+|.-.+. +-..=..+..+.++++..+....... ..=..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888873 4331 112344556677776665532111 00011244556666665553221111 0112356778
Q ss_pred eeecccccccc-cCcccc-CCCCCCCEEEccCCcccccCc-h-hccCCCCCCEEeCCCCcCc--ccCcccCCCCCCCCEE
Q 007553 168 TLYLAYNNLVG-PLPKEV-GNLKNLDSLLLNRNNLTGPIP-S-TIGFLNLLDELRLSHNRLD--GPIPPTIGNLTYLTSL 241 (599)
Q Consensus 168 ~L~l~~n~~~~-~~~~~l-~~l~~L~~L~l~~n~~~~~~~-~-~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L 241 (599)
.|+.+++...+ ....++ .+..+|+.|.++.+.--+... . --.++..|+.+++..+... +.+...-.+++.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 88777765432 222223 455778888888775321111 1 1235567888888776543 2222333567888888
Q ss_pred EccCCcCCCCC-----CcccCCCCCCCEEeccCcceee-cCCcCccCCCCCCEEECCCCCCccC--CCccCcCCCCCCEE
Q 007553 242 DLSSNQLSGLL-----PREVGNLKYLDSLSLDRNNLIG-PIPPTIGYLTNLTSLNLGYNQLNSS--IPPELMNCSQLQNL 313 (599)
Q Consensus 242 ~l~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~~~~l~~L~~L 313 (599)
.++.+...... ...-..+..|..+.|+++.... .....+..++.|+.+++-.+.-... +...-..+|++++.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 88877543221 1222345678888888887543 2334566778888888877643221 11122345555554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=1.8e-06 Score=79.10 Aligned_cols=83 Identities=27% Similarity=0.210 Sum_probs=49.9
Q ss_pred CCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccC-CccccCCCcCCEE
Q 007553 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLI-PSSIGNLTNLTHL 121 (599)
Q Consensus 43 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L 121 (599)
+.+++.|++.+|.++++ .....++.|++|.|+-|+|+..-| |..|++|++|+|+.|.|.+.- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556666666666533 123456677777777777765433 566677777777777666431 1345566666666
Q ss_pred eeeccccc
Q 007553 122 DLSLNQLS 129 (599)
Q Consensus 122 ~l~~n~i~ 129 (599)
.|..|.-.
T Consensus 94 WL~ENPCc 101 (388)
T KOG2123|consen 94 WLDENPCC 101 (388)
T ss_pred hhccCCcc
Confidence 66666544
|
|
| >cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00031 Score=63.62 Aligned_cols=104 Identities=14% Similarity=0.011 Sum_probs=66.1
Q ss_pred ceecccCCceEEEEEeCC-------CCEEEEEEecCCchh---hH--------------------HHH----HHhhc--c
Q 007553 489 YCIGTGGYGSVYRAQLSS-------GRVVALKKLHRSETE---EL--------------------AFL----ETSST--D 532 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~-------g~~vavK~l~~~~~~---~~--------------------~f~----~e~~~--~ 532 (599)
.+||.|.-+.||.|.-.+ +..+|||..+....+ .. .+. +|... +
T Consensus 3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r 82 (197)
T cd05146 3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR 82 (197)
T ss_pred CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 358999999999998543 478999987543211 00 111 23332 2
Q ss_pred c-----cccC-CCCCCcceeecccccc---cccccCCCCCCCCChHHHHHHHHHHHHHHhhh-hCCCCccccccccC
Q 007553 533 F-----RHYN-SHTDNDDSSDEHLANN---EHFLSAPENYERVDFSPDFSIADQSKKGFKLL-ADRKYRKSYYQRLY 599 (599)
Q Consensus 533 l-----~H~n-~~~~~~~lv~e~~~~G---~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yL-H~~~~~~i~Hrdl~ 599 (599)
+ .-|. .....-++||||+.++ ...+.+ ..++..+..++..++..+|.+| | ..+|+|+||.
T Consensus 83 l~~~Gv~vP~pi~~~~~~lvME~Ig~~~~~~~~Lkd----~~~~~~~~~~i~~~i~~~l~~l~H---~~glVHGDLs 152 (197)
T cd05146 83 MQKAGIPCPEVVVLKKHVLVMSFIGDDQVPAPKLKD----AKLNDEEMKNAYYQVLSMMKQLYK---ECNLVHADLS 152 (197)
T ss_pred HHHcCCCCCeEEEecCCEEEEEEcCCCCccchhhhc----cccCHHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 2 2222 3335568999999865 223332 1234455677889999999999 7 6799999984
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=3.8e-05 Score=83.58 Aligned_cols=109 Identities=16% Similarity=0.037 Sum_probs=84.6
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchh--hHHHHH---Hhhc-cccccC--------CCCCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE--ELAFLE---TSST-DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~--~~~f~~---e~~~-~l~H~n--------~~~~~~~lv~e~ 549 (599)
++...+.+|+++|=.|.+|+.+.|. |+||.+-..... -+.|.+ |++. .++||| .....-|||-+|
T Consensus 24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqy 102 (1431)
T KOG1240|consen 24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQY 102 (1431)
T ss_pred ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence 4455667999999999999988887 888987544322 233444 4445 889999 455667889999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..+. ++-|..+ .-+...++.=||.|+.+|+.=.| ..+|+|+|||
T Consensus 103 vkhnLyDRlSTR---PFL~~iEKkWiaFQLL~al~qcH---~~gVcHGDIK 147 (1431)
T KOG1240|consen 103 VKHNLYDRLSTR---PFLVLIEKKWIAFQLLKALSQCH---KLGVCHGDIK 147 (1431)
T ss_pred Hhhhhhhhhccc---hHHHHHHHHHHHHHHHHHHHHHH---HcCccccccc
Confidence 9888 7777743 34677788889999999999999 9999999997
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=7.1e-05 Score=84.49 Aligned_cols=55 Identities=15% Similarity=0.028 Sum_probs=47.1
Q ss_pred CCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 540 TDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 540 ~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+..+.++||++.. +++|... ...+++.+.+.++.||++||+||| ..+|+|||||
T Consensus 52 ~~~~~~~~e~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH---~~gIvHrDlK 107 (793)
T PLN00181 52 DDSIVRALECEDVSLRQWLDNP--DRSVDAFECFHVFRQIVEIVNAAH---SQGIVVHNVR 107 (793)
T ss_pred cchhhhhhccCCccHHHHHhcc--cccccHHHHHHHHHHHHHHHHHHH---hCCeeeccCC
Confidence 35678889999777 9999743 345899999999999999999999 7899999997
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=6.6e-05 Score=68.94 Aligned_cols=60 Identities=30% Similarity=0.323 Sum_probs=25.0
Q ss_pred CCCcEEEeecCcCCccCCccccCCCcCCEEeeecc--cccccCCccccCCCcccEEecccCccC
Q 007553 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN--QLSGRLPQEVGNLKNLVSLFLDNNNLT 153 (599)
Q Consensus 92 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n--~i~~~~~~~l~~l~~L~~L~l~~n~i~ 153 (599)
..|+.|.+.+..+++. ..|-.|++|+.|.++.| .+.+.++-....+++|++|++++|+|.
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444444444443322 22334444555555554 333322222233345555555555444
|
|
| >cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00061 Score=63.97 Aligned_cols=96 Identities=9% Similarity=0.023 Sum_probs=68.1
Q ss_pred ceecccCCceEEEEEeCCCCEEEEEEecCCch--hhHHHHHHhhc--ccc-----ccC----CCC----CCcceeecccc
Q 007553 489 YCIGTGGYGSVYRAQLSSGRVVALKKLHRSET--EELAFLETSST--DFR-----HYN----SHT----DNDDSSDEHLA 551 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~-----H~n----~~~----~~~~lv~e~~~ 551 (599)
..++.|..+.+|++...+|..+++|....... ....+..|.++ .++ .|. ... +..++||||++
T Consensus 4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~ 83 (223)
T cd05154 4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD 83 (223)
T ss_pred eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence 34889999999999987778999998765432 23445666665 333 343 111 25689999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADR 588 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~ 588 (599)
++ .+.+.. ..++..++..++.+++++|++||+-
T Consensus 84 G~~l~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH~~ 118 (223)
T cd05154 84 GRVLRDRLLR----PELSPEERRALARALADTLAALHSV 118 (223)
T ss_pred CEecCCCCCC----CCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 87 443321 2378888999999999999999953
|
This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=2.2e-06 Score=83.09 Aligned_cols=275 Identities=20% Similarity=0.090 Sum_probs=169.2
Q ss_pred CCCCEEEcccCcCcccCC--cCCCCCCCCCEEeccCCc-ccccCCccCC-CCCCCcEEEeecC-cCCccCCc-cccCCCc
Q 007553 44 SRLKVLDLSYNRLTGTIP--SEIGSLRDLLELNLSYNI-LNGSIPLEFG-NLKDLYDLRLQGN-KLDGLIPS-SIGNLTN 117 (599)
Q Consensus 44 ~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~-~~~~~p~~~~-~l~~L~~L~L~~n-~~~~~~~~-~~~~l~~ 117 (599)
..|+.|.+.++.-.+.-+ .....+++++.|++.++. +++..-.++. .+++|++|++..| .+++..-. --..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468899998886432222 223578999999999985 3333223343 6899999999985 34433222 2346899
Q ss_pred CCEEeeeccc-cccc-CCccccCCCcccEEecccCccCCCCcccc----cCCCCCCeeecccccccccCc--cccCCCCC
Q 007553 118 LTHLDLSLNQ-LSGR-LPQEVGNLKNLVSLFLDNNNLTGPIPSTL----YHLNQLSTLYLAYNNLVGPLP--KEVGNLKN 189 (599)
Q Consensus 118 L~~L~l~~n~-i~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~l----~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~ 189 (599)
|++|+++.+. |++. +-....++.+++++.+.+|.-.+. +.+ ..+.-+.++++..|....... ..-..+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 9999998874 3321 112345677788887776532211 111 223445566665554322111 11134667
Q ss_pred CCEEEccCCcccccCc-h-hccCCCCCCEEeCCCCcC-cccCcccC-CCCCCCCEEEccCCcCCCC--CCcccCCCCCCC
Q 007553 190 LDSLLLNRNNLTGPIP-S-TIGFLNLLDELRLSHNRL-DGPIPPTI-GNLTYLTSLDLSSNQLSGL--LPREVGNLKYLD 263 (599)
Q Consensus 190 L~~L~l~~n~~~~~~~-~-~~~~l~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~ 263 (599)
|++|+.+.+...+..+ . --....+|+.|.+.+|+- +..--..+ .+++.|+.+++..+..... +..--..++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 8999988865432222 1 234668899999998863 22211122 4568899999988765421 222234678999
Q ss_pred EEeccCcceeecC-----CcCccCCCCCCEEECCCCCCccC-CCccCcCCCCCCEEEcccCcC
Q 007553 264 SLSLDRNNLIGPI-----PPTIGYLTNLTSLNLGYNQLNSS-IPPELMNCSQLQNLAVNHNSL 320 (599)
Q Consensus 264 ~L~L~~n~l~~~~-----~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l 320 (599)
.|.+++|...... ...-..+..|..+.|+++..... .-..+..+++|+.+++-++.-
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 9999988754322 22234577899999999876532 334567788999999988864
|
|
| >KOG1266 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=7.4e-05 Score=70.58 Aligned_cols=58 Identities=12% Similarity=-0.040 Sum_probs=46.9
Q ss_pred CCCcceeecccccc--cccccC-CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 540 TDNDDSSDEHLANN--EHFLSA-PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 540 ~~~~~lv~e~~~~G--~~~l~~-~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
......++|||..| .+||+. ++..+.+....-.+++.||..||.||| .|.|+|+|.+|
T Consensus 144 ~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLh-s~~Ppiihgnl 204 (458)
T KOG1266|consen 144 KPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLH-SCDPPIIHGNL 204 (458)
T ss_pred ccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh-ccCCccccCCc
Confidence 34457889999999 999986 334445555556789999999999999 88999999986
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=1.1e-05 Score=74.24 Aligned_cols=99 Identities=29% Similarity=0.333 Sum_probs=51.7
Q ss_pred CCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCc-ccccCCCCCCeee
Q 007553 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP-STLYHLNQLSTLY 170 (599)
Q Consensus 92 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~ 170 (599)
.+.+.|++.+|.+.++ ....+|+.|++|.|+-|.|+..-| +..+++|++|.|..|.|...-. ..+.++|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445555555555533 223455566666666665553322 5555666666666665553211 2456666777777
Q ss_pred cccccccccCc-----cccCCCCCCCEEE
Q 007553 171 LAYNNLVGPLP-----KEVGNLKNLDSLL 194 (599)
Q Consensus 171 l~~n~~~~~~~-----~~l~~l~~L~~L~ 194 (599)
|..|.-.+.-+ ..+..+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 76665543322 1234455555554
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0004 Score=74.51 Aligned_cols=107 Identities=20% Similarity=0.138 Sum_probs=70.5
Q ss_pred ccceecccCCceEEEEEe-CCCCEEEEEEec----CCchhh---HHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 487 IKYCIGTGGYGSVYRAQL-SSGRVVALKKLH----RSETEE---LAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~----~~~~~~---~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
....+|.|.+|.|+...- ......+.|... ....+. .....|..+ .+.||| ...+...-+||
T Consensus 322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE 401 (601)
T KOG0590|consen 322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSME 401 (601)
T ss_pred ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhhh
Confidence 356789999997776553 233334444322 222211 124455555 999999 34444455599
Q ss_pred ccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++. ...+... ..++-.++-.+..|+.+|+.|+| ..+|.|||++
T Consensus 402 ~~~~Dlf~~~~~~---~~~~~~e~~c~fKqL~~Gv~y~h---~~GiahrdlK 447 (601)
T KOG0590|consen 402 YCPYDLFSLVMSN---GKLTPLEADCFFKQLLRGVKYLH---SMGLAHRDLK 447 (601)
T ss_pred cccHHHHHHHhcc---cccchhhhhHHHHHHHHHHHHHH---hcCceeccCc
Confidence 99985 4444421 23677788999999999999999 9999999986
|
|
| >KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0019 Score=62.94 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=45.7
Q ss_pred CCCCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 SHTDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ~~~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..+..+|+||.-.+.- ++||-.+. .+...+.-|..|..+|..||| ..+|.|||||
T Consensus 313 g~~~tlylvMkrY~~tLr~yl~~~~----~s~r~~~~~laQlLEav~hL~---~hgvAhRDlK 368 (598)
T KOG4158|consen 313 GEPKTLYLVMKRYRQTLREYLWTRH----RSYRTGRVILAQLLEAVTHLH---KHGVAHRDLK 368 (598)
T ss_pred CCCceEEEehhcchhhHHHHHhcCC----CchHHHHHHHHHHHHHHHHHH---Hccchhhccc
Confidence 5677889999999988 88887533 444556778889999999999 8999999997
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 599 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 9e-39 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 1e-05 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-38 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-05 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 8e-18 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-16 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 4e-16 | ||
| 2id5_A | 477 | Crystal Structure Of The Lingo-1 Ectodomain Length | 3e-10 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 1e-09 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 6e-09 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 8e-09 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 9e-09 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 9e-09 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 2e-08 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 5e-08 | ||
| 4b8c_D | 727 | Nuclease Module Of The Yeast Ccr4-Not Complex Lengt | 3e-07 | ||
| 4b8c_D | 727 | Nuclease Module Of The Yeast Ccr4-Not Complex Lengt | 8e-04 | ||
| 1ozn_A | 285 | 1.5a Crystal Structure Of The Nogo Receptor Ligand | 6e-06 | ||
| 1p8t_A | 285 | Crystal Structure Of Nogo-66 Receptor Length = 285 | 6e-06 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 2e-05 | ||
| 1xku_A | 330 | Crystal Structure Of The Dimeric Protein Core Of De | 2e-05 | ||
| 1xcd_A | 329 | Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo | 2e-05 | ||
| 3kj4_A | 286 | Structure Of Rat Nogo Receptor Bound To 1d9 Antagon | 2e-05 | ||
| 3j0a_A | 844 | Homology Model Of Human Toll-Like Receptor 5 Fitted | 4e-05 | ||
| 2wfh_A | 193 | The Human Slit 2 Dimerization Domain D4 Length = 19 | 1e-04 | ||
| 3vq1_A | 606 | Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE | 1e-04 | ||
| 2z64_A | 599 | Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp | 1e-04 | ||
| 3cig_A | 697 | Crystal Structure Of Mouse Tlr3 Ectodomain Length = | 2e-04 | ||
| 4fmz_A | 347 | Crystal Structure Of An Internalin (Inlf) From List | 3e-04 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 4e-04 | ||
| 3rfj_A | 279 | Design Of A Binding Scaffold Based On Variable Lymp | 5e-04 | ||
| 3v47_A | 455 | Crystal Structure Of The N-Tetminal Fragment Of Zeb | 5e-04 | ||
| 3rfs_A | 272 | Design Of A Binding Scaffold Based On Variable Lymp | 8e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727 | Back alignment and structure |
|
| >pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727 | Back alignment and structure |
|
| >pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285 | Back alignment and structure |
|
| >pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330 | Back alignment and structure |
|
| >pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329 | Back alignment and structure |
|
| >pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286 | Back alignment and structure |
|
| >pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844 | Back alignment and structure |
|
| >pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193 | Back alignment and structure |
|
| >pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606 | Back alignment and structure |
|
| >pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599 | Back alignment and structure |
|
| >pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697 | Back alignment and structure |
|
| >pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279 | Back alignment and structure |
|
| >pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455 | Back alignment and structure |
|
| >pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 599 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-110 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-109 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-108 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-101 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 6e-96 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 4e-66 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-43 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 8e-89 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 3e-88 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 4e-88 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 8e-77 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 7e-81 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 6e-80 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 3e-77 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 1e-73 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 2e-67 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 3e-63 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 6e-04 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 3e-73 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 2e-69 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 2e-68 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 7e-56 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 3e-41 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 2e-27 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 6e-71 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-70 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-61 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-56 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 8e-47 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 1e-08 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 3e-62 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 8e-62 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 4e-61 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 2e-59 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-61 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 5e-61 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 1e-59 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-59 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 4e-56 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 1e-52 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 4e-61 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 8e-59 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 4e-54 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 4e-46 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 2e-60 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 1e-41 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 1e-25 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 4e-55 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 3e-53 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 9e-53 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-47 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 3e-44 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-25 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 5e-54 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 4e-50 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 1e-47 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 1e-46 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 2e-40 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 5e-24 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 4e-50 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 1e-49 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 2e-48 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 7e-48 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 1e-48 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 2e-45 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 6e-45 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 2e-26 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 1e-47 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 3e-40 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 5e-19 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 7e-47 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 2e-43 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 3e-26 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 1e-46 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 1e-36 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 8e-36 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 2e-44 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 3e-42 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 1e-40 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 7e-38 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 9e-26 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 6e-24 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 5e-44 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 7e-41 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 4e-34 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 1e-22 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 5e-15 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 3e-43 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 1e-42 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 4e-41 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 5e-38 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 1e-36 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 5e-30 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 6e-42 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 8e-30 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 8e-24 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 7e-23 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 3e-21 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 7e-41 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 5e-40 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 2e-33 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 1e-40 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 5e-40 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 1e-35 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 5e-32 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-27 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 1e-26 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-08 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 9e-05 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 1e-40 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 9e-31 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 4e-29 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 3e-23 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 2e-19 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 8e-40 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 4e-39 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-35 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-34 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-32 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 9e-38 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 4e-24 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 1e-36 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 6e-34 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 6e-32 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 4e-28 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 2e-36 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 5e-33 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 2e-30 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 2e-18 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 1e-35 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 5e-34 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 7e-34 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 2e-30 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 2e-22 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 5e-10 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 8e-35 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 4e-30 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 4e-30 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 6e-18 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 1e-34 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 3e-34 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 1e-33 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 5e-33 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 9e-32 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 1e-15 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 1e-32 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 2e-30 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 6e-16 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 2e-15 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 3e-31 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 2e-30 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 2e-24 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 1e-22 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 3e-19 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-30 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 6e-30 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-27 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 3e-23 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 7e-30 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 1e-27 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 5e-15 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-27 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 3e-25 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 6e-25 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 9e-15 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 8e-25 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 9e-24 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 1e-21 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 3e-20 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 7e-05 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 4e-24 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 5e-22 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 4e-18 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 4e-24 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 7e-24 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 7e-22 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 3e-12 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 1e-08 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 6e-24 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 7e-24 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 4e-23 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 9e-23 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 2e-07 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 9e-24 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 4e-23 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 6e-22 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 5e-19 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 1e-09 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 2e-22 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 3e-22 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 2e-20 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 4e-21 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 4e-20 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 1e-16 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 2e-12 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 3e-12 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 3e-11 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 1e-20 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 2e-20 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 3e-20 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 5e-20 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 1e-16 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 2e-20 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 8e-18 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 2e-12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 2e-19 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 3e-14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 1e-09 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 6e-08 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 4e-19 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 1e-15 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 5e-15 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 1e-10 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 6e-19 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 2e-15 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 2e-14 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 5e-14 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 2e-13 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 2e-11 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 5e-11 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 5e-18 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 8e-16 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 1e-14 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 2e-08 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 2e-17 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 7e-14 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 2e-13 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 1e-12 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 2e-11 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 2e-08 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 3e-16 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 9e-11 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 3e-10 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 2e-09 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 3e-06 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 3e-15 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 6e-15 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 5e-12 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 1e-11 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 4e-06 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 2e-14 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 6e-13 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 9e-13 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 7e-06 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 3e-13 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 4e-12 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 1e-06 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 3e-13 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 4e-12 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 1e-09 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 6e-08 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 3e-04 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 5e-13 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 3e-07 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 1e-12 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 8e-11 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 1e-08 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 1e-08 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 1e-11 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 1e-08 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 1e-07 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 2e-07 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 6e-07 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 3e-11 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 1e-08 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 1e-06 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 2e-05 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 2e-05 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 4e-11 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 1e-09 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 7e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-10 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 7e-11 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 3e-08 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 8e-08 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 1e-04 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 7e-11 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 8e-11 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 9e-11 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 9e-09 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 2e-08 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 1e-07 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 1e-10 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 2e-10 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 2e-09 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 9e-07 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 4e-04 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 3e-09 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 7e-08 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 2e-07 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 6e-06 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 9e-06 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 3e-09 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 4e-08 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 6e-05 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 1e-07 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 2e-05 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 4e-05 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 1e-04 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 3e-07 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 1e-06 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 2e-06 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 4e-07 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 1e-06 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 1e-06 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 1e-05 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 2e-05 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 2e-04 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 6e-07 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 6e-07 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 6e-07 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 1e-04 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 2e-04 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 9e-07 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 2e-06 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 7e-06 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 8e-06 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 1e-04 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 1e-05 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 2e-05 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 3e-05 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 4e-05 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 1e-04 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 2e-04 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 2e-04 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 2e-04 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 3e-04 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 3e-04 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 4e-04 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 4e-04 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 4e-04 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 5e-04 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 5e-04 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 5e-04 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 5e-04 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 6e-04 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 6e-04 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 6e-04 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 6e-04 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 7e-04 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 7e-04 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 7e-04 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 7e-04 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 7e-04 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 8e-04 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 348 bits (894), Expect = e-110
Identities = 117/365 (32%), Positives = 182/365 (49%), Gaps = 9/365 (2%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETG--ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLE 72
+L+T + F SG I + L+ L L N TG IP + + +L+
Sbjct: 364 TNLSASLLTLDLSSNNF-SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 73 LNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 132
L+LS+N L+G+IP G+L L DL+L N L+G IP + + L L L N L+G +
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 133 PQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDS 192
P + N NL + L NN LTG IP + L L+ L L+ N+ G +P E+G+ ++L
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 193 LLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSN--QLSG 250
L LN N G IP+ + + ++ N + G I N + N + G
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598
Query: 251 LLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQL 310
+ ++ L + ++ G PT ++ L++ YN L+ IP E+ + L
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658
Query: 311 QNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSG 370
L + HN +SGSIP E+G+L L LDLS N ++G IP + + ++E+D+S NNLSG
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Query: 371 VIPKS 375
IP+
Sbjct: 719 PIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-109
Identities = 126/384 (32%), Positives = 178/384 (46%), Gaps = 18/384 (4%)
Query: 19 PNLVTFRIWGTRFLSGRIPSETGA-LSRLKVLDLSYNRLTGTIPSEI---GSLRDLLELN 74
L + L G L+ L+VLDLS N ++G +L L
Sbjct: 126 SGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184
Query: 75 LSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 134
+S N ++G + + +L L + N IP +G+ + L HLD+S N+LSG +
Sbjct: 185 ISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241
Query: 135 EVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSL 193
+ L L + +N GPIP L L L LA N G +P + G L L
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 194 LLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP-TIGNLTYLTSLDLSSNQLSGLL 252
L+ N+ G +P G +LL+ L LS N G +P T+ + L LDLS N+ SG L
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Query: 253 PREVGNLKY-LDSLSLDRNNLIGPIPPTIG--YLTNLTSLNLGYNQLNSSIPPELMNCSQ 309
P + NL L +L L NN GPI P + L L L N IPP L NCS+
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419
Query: 310 LQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS 369
L +L ++ N LSG+IPS +G+L LR L L N + G IP +L + + + + N+L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 370 GVIPKSVFRVPGLKW---SENNLE 390
G IP + L W S N L
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLT 503
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 341 bits (876), Expect = e-108
Identities = 117/367 (31%), Positives = 173/367 (47%), Gaps = 13/367 (3%)
Query: 32 LSGRIPSET-GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLE-LNLSYNILNGSIPLEFG 89
SG +P +T + LKVLDLS+N +G +P + +L L L+LS N +G I
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 90 N--LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFL 147
L +L LQ N G IP ++ N + L L LS N LSG +P +G+L L L L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 148 DNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPST 207
N L G IP L ++ L TL L +N+L G +P + N NL+ + L+ N LTG IP
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 208 IGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
IG L L L+LS+N G IP +G+ L LDL++N +G +P + S +
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKI 565
Query: 268 DRNNLIGPIPPTIGYLTNLTSLNLGYN--QLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325
N + G I + N + +L S + G
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625
Query: 326 SEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW- 384
N + LD+S+N ++G IP ++G +P + +++ N++SG IP V + GL
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 385 --SENNL 389
S N L
Sbjct: 686 DLSSNKL 692
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 323 bits (830), Expect = e-101
Identities = 106/374 (28%), Positives = 161/374 (43%), Gaps = 20/374 (5%)
Query: 31 FLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIP--LEF 88
+ S +L+ L+ L LS + + G++ L L+LS N L+G +
Sbjct: 64 VGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSL 122
Query: 89 GNLKDLYDLRLQGNKLDGLIPSSIG-NLTNLTHLDLSLNQLSGRLPQEV---GNLKNLVS 144
G+ L L + N LD S G L +L LDLS N +SG L
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182
Query: 145 LFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPI 204
L + N ++G + + L L ++ NN +P +G+ L L ++ N L+G
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 239
Query: 205 PSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV-GNLKYLD 263
I L L +S N+ GPIPP L L L L+ N+ +G +P + G L
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLSG 322
L L N+ G +PP G + L SL L N + +P + L+ L+ L ++ N SG
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 323 SIPSEIGNL-IHLRQLDLSHNFINGTIPSQLGKIP--NVSEVDVSKNNLSGVIPKSVFRV 379
+P + NL L LDLS N +G I L + P + E+ + N +G IP ++
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417
Query: 380 PGLKW---SENNLE 390
L S N L
Sbjct: 418 SELVSLHLSFNYLS 431
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 309 bits (793), Expect = 6e-96
Identities = 108/349 (30%), Positives = 168/349 (48%), Gaps = 18/349 (5%)
Query: 44 SRLKVLDLSYNRLT---GTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
++ +DLS L + S + SL L L LS + +NGS+ F L L L
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108
Query: 101 GNKLDGLIPS--SIGNLTNLTHLDLSLNQLSGRLPQEVG-NLKNLVSLFLDNNNLTGPIP 157
N L G + + S+G+ + L L++S N L G L +L L L N+++G
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168
Query: 158 STLY---HLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLL 214
+L L ++ N + G + V NL+ L ++ NN + IP +G + L
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSAL 225
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG 274
L +S N+L G I T L L++SSNQ G +P LK L LSL N G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283
Query: 275 PIPPTI-GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSE-IGNLI 332
IP + G LT L+L N ++PP +CS L++LA++ N+ SG +P + + +
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343
Query: 333 HLRQLDLSHNFINGTIPSQLGKI-PNVSEVDVSKNNLSGVIPKSVFRVP 380
L+ LDLS N +G +P L + ++ +D+S NN SG I ++ + P
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 4e-66
Identities = 79/290 (27%), Positives = 128/290 (44%), Gaps = 19/290 (6%)
Query: 114 NLTNLTHLDLSLNQLS---GRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLY 170
+T +DLS L+ + + +L L SLFL N+++ G + L++L
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106
Query: 171 LAYNNLVGPLP--KEVGNLKNLDSLLLNRNNLTGPIPSTIGF-LNLLDELRLSHNRLDGP 227
L+ N+L GP+ +G+ L L ++ N L P + G LN L+ L LS N + G
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 228 IPPTI---GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLT 284
L L +S N++SG + V L+ L + NN I P +G +
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCS 223
Query: 285 NLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFI 344
L L++ N+L+ + C++L+ L ++ N G IP L L+ L L+ N
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281
Query: 345 NGTIPSQL-GKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENNLE 390
G IP L G ++ +D+S N+ G +P L+ S NN
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 1e-43
Identities = 58/204 (28%), Positives = 88/204 (43%), Gaps = 22/204 (10%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTI--------------------PSEIGSLRDLL 71
SG IP+E G L LDL+ N GTI I +
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 72 ELNLSYNILN--GSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 129
E + + N+L G + L + G + N ++ LD+S N LS
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 130 GRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKN 189
G +P+E+G++ L L L +N+++G IP + L L+ L L+ N L G +P+ + L
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 190 LDSLLLNRNNLTGPIPSTIGFLNL 213
L + L+ NNL+GPIP F
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETF 729
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 276 bits (709), Expect = 8e-89
Identities = 84/281 (29%), Positives = 124/281 (44%), Gaps = 7/281 (2%)
Query: 49 LDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS--IPLEFGNLKDLYDLRLQG-NKLD 105
D G + + L+LS L IP NL L L + G N L
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 106 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165
G IP +I LT L +L ++ +SG +P + +K LV+L N L+G +P ++ L
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 166 LSTLYLAYNNLVGPLPKEVGNLKNLDSLL-LNRNNLTGPIPSTIGFLNLLDELRLSHNRL 224
L + N + G +P G+ L + + ++RN LTG IP T LN L + LS N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209
Query: 225 DGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLT 284
+G G+ + L+ N L+ L +VG K L+ L L N + G +P + L
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 285 NLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325
L SLN+ +N L IP N + A +N P
Sbjct: 269 FLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSP 308
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 3e-88
Identities = 78/270 (28%), Positives = 126/270 (46%), Gaps = 7/270 (2%)
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGR--LPQEVGNLKNLVSLFL-DNNNLTGPIPS 158
G++ + + +LDLS L +P + NL L L++ NNL GPIP
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95
Query: 159 TLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELR 218
+ L QL LY+ + N+ G +P + +K L +L + N L+G +P +I L L +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 219 LSHNRLDGPIPPTIGNLTYL-TSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIP 277
NR+ G IP + G+ + L TS+ +S N+L+G +P NL L + L RN L G
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214
Query: 278 PTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQL 337
G N ++L N L + ++ L L + +N + G++P + L L L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 338 DLSHNFINGTIPSQLGKIPNVSEVDVSKNN 367
++S N + G IP G + + N
Sbjct: 274 NVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 4e-88
Identities = 88/280 (31%), Positives = 127/280 (45%), Gaps = 9/280 (3%)
Query: 33 SGRIPSETGALSRLKVLDLSYNRLTGT--IPSEIGSLRDLLELNLS-YNILNGSIPLEFG 89
G + R+ LDLS L IPS + +L L L + N L G IP
Sbjct: 39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 90 NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDN 149
L L+ L + + G IP + + L LD S N LSG LP + +L NLV + D
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 150 NNLTGPIPSTLYHLNQLST-LYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTI 208
N ++G IP + ++L T + ++ N L G +P NL NL + L+RN L G
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217
Query: 209 GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 268
G ++ L+ N L + +G L LDL +N++ G LP+ + LK+L SL++
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 269 RNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCS 308
NNL G I P G L N+ P L C+
Sbjct: 277 FNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP--LPACT 313
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 8e-77
Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 9/249 (3%)
Query: 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVG--PLPKEVGNLKNLDSL-LLNRNNLTGPIP 205
N G + T +++ L L+ NL P+P + NL L+ L + NNL GPIP
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSL 265
I L L L ++H + G IP + + L +LD S N LSG LP + +L L +
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154
Query: 266 SLDRNNLIGPIPPTIGYLTNL-TSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSI 324
+ D N + G IP + G + L TS+ + N+L IPP N + L + ++ N L G
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA 213
Query: 325 PSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW 384
G+ + +++ L+ N + + +G N++ +D+ N + G +P+ + ++ L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 385 ---SENNLE 390
S NNL
Sbjct: 273 LNVSFNNLC 281
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 266 bits (681), Expect = 7e-81
Identities = 69/378 (18%), Positives = 133/378 (35%), Gaps = 38/378 (10%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYN--------ILNGS 83
+ L L +++ +P+ + +L ++ +N++ N +
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296
Query: 84 IPLEFGNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL 142
+ + + + + N L + +S+ + L L+ NQL G G+ L
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKL 355
Query: 143 VSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG-PLPKEVGNLKNLDSLLLNRNNLT 201
SL L N +T + Q+ L A+N L P + ++ + ++ + N +
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415
Query: 202 G-------PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL--- 251
P+ T + + LS+N++ + L+S++L N L+ +
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475
Query: 252 ----LPREVGNLKYLDSLSLDRNNLIGPIPPTIGY--LTNLTSLNLGYNQLNSSIPPELM 305
N L S+ L N L + L L ++L YN S P + +
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSF-SKFPTQPL 533
Query: 306 NCSQLQ------NLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVS 359
N S L+ N P I L QL + N I + ++ PN+S
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNIS 590
Query: 360 EVDVSKNNLSGVIPKSVF 377
+D+ N + V
Sbjct: 591 VLDIKDNPNISIDLSYVC 608
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 263 bits (675), Expect = 6e-80
Identities = 66/406 (16%), Positives = 135/406 (33%), Gaps = 34/406 (8%)
Query: 3 NNGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPS 62
+ + F +L+ I I + + + N +T +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINS-DPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200
Query: 63 EIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLD 122
+ L L + + + E ++ + NL +LT ++
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVE 255
Query: 123 LSLNQLSGRLPQEVGNLKNLVSLFLDNNNLT--------GPIPSTLYHLNQLSTLYLAYN 174
+ +LP + L + + + N + ++ +Y+ YN
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 175 NL-VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIG 233
NL P+ + +K L L N L G +P+ G L L L++N++ G
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCG 374
Query: 234 NLTYLTSLDLSSNQLSGLLPR-EVGNLKYLDSLSLDRNNL-------IGPIPPTIGYLTN 285
+ +L + N+L + + ++ + ++ N + P+ PT N
Sbjct: 375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434
Query: 286 LTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG-------SIPSEIGNLIHLRQLD 338
++S+NL NQ++ S L ++ + N L+ N L +D
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494
Query: 339 LSHNFINGTIPS-QLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLK 383
L N + + +P + +D+S N+ S P LK
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 3e-77
Identities = 74/387 (19%), Positives = 128/387 (33%), Gaps = 37/387 (9%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTG----TIPSEIGSLRDLLELNLSYNILNGSIP-- 85
SGR+P G L+ L+VL L + P I + + +
Sbjct: 93 ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDY 152
Query: 86 LEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSL 145
+ DL + + I S T + N ++ + + V L L
Sbjct: 153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQF 211
Query: 146 FLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIP 205
++ N+ + Y + NLK+L + + +P
Sbjct: 212 YMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266
Query: 206 STIGFLNLLDELRLSHNRL--------DGPIPPTIGNLTYLTSLDLSSNQLSGL-LPREV 256
+ + L + + ++ NR D + + + N L + +
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326
Query: 257 GNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM-NCSQLQNLAV 315
+K L L N L G P G L SLNL YNQ+ + IP Q++NL+
Sbjct: 327 QKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSF 384
Query: 316 NHNSLSGSIPS--EIGNLIHLRQLDLSHNFING-------TIPSQLGKIPNVSEVDVSKN 366
HN L IP+ + ++ + +D S+N I + K NVS +++S N
Sbjct: 385 AHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Query: 367 NLSGVIPKSVFRVPGLKW---SENNLE 390
+S + L N L
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLT 470
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 1e-73
Identities = 54/368 (14%), Positives = 120/368 (32%), Gaps = 25/368 (6%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNG----SIPLEFGNLKDLYD 96
+ R+ L L +G +P IG L +L L L + P
Sbjct: 78 NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137
Query: 97 LRLQGNKLDGLIPSSIG--NLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG 154
+ + ++L ++ + + + + +NN+T
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197
Query: 155 PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLL 214
+ + L +L Y+ + V E +N + L L
Sbjct: 198 -VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDL 251
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL--------LPREVGNLKYLDSLS 266
++ + + +P + L + ++++ N+ + + + +
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311
Query: 267 LDRNNLI-GPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325
+ NNL P+ ++ + L L YNQL P + +L +L + +N ++
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQL-EGKLPAFGSEIKLASLNLAYNQITEIPA 370
Query: 326 SEIGNLIHLRQLDLSHNFINGTIPS--QLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLK 383
+ G + L +HN + IP+ + +S +D S N + V K+ +
Sbjct: 371 NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429
Query: 384 WSENNLEV 391
+ N+
Sbjct: 430 FKGINVSS 437
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 2e-67
Identities = 63/348 (18%), Positives = 116/348 (33%), Gaps = 41/348 (11%)
Query: 14 NFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLEL 73
+ + I + + + + +L +L+ YN+L G +P GS L L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358
Query: 74 NLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPS-SIGNLTNLTHLDLSLNQLSG-- 130
NL+YN + G + + +L NKL + +++ ++ +D S N++
Sbjct: 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418
Query: 131 -----RLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG------- 178
L N+ S+ L NN ++ + LS++ L N L
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478
Query: 179 PLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNL--LDELRLSHNRLDGPIPPTIGNLT 236
+ N L S+ L N LT + L L + LS+N P N +
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536
Query: 237 YLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQL 296
L + + + N + P I +LT L +G N +
Sbjct: 537 TLKGFGIRNQRD------------------AQGNRTLREWPEGITLCPSLTQLQIGSNDI 578
Query: 297 NSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFI 344
+ ++ + L + N S + I L ++
Sbjct: 579 -RKVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 3e-63
Identities = 57/373 (15%), Positives = 111/373 (29%), Gaps = 28/373 (7%)
Query: 50 DLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDG--- 106
+ + + S + L+L +G +P G L +L L L +
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 107 -LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK--NLVSLFLDNNNLTGPIPSTLYHL 163
P I + +L+ ++++ I +
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182
Query: 164 NQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNR 223
+ + + NN+ + K V L L + + + +
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT- 240
Query: 224 LDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI--------GP 275
NL LT +++ + LP + L + +++ N I
Sbjct: 241 ----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296
Query: 276 IPPTIGYLTNLTSLNLGYNQLNS-SIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHL 334
+ + +GYN L + + L +L L +N L G +P G+ I L
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355
Query: 335 RQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF--RVPGLKW---SENNL 389
L+L++N I + G V + + N L IP V + S N +
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEI 414
Query: 390 EVENPVISENAPP 402
+ + P
Sbjct: 415 GSVDGKNFDPLDP 427
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 7/91 (7%), Positives = 24/91 (26%)
Query: 312 NLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV 371
N + + + + L L +G +P +G++ + + + +
Sbjct: 61 NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120
Query: 372 IPKSVFRVPGLKWSENNLEVENPVISENAPP 402
+ S+ + +
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 3e-73
Identities = 83/361 (22%), Positives = 137/361 (37%), Gaps = 19/361 (5%)
Query: 35 RIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94
++P + + VL+L++N+L + L L++ +N ++ P L L
Sbjct: 18 QVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG 154
L LQ N+L L + TNLT L L N + KNL++L L +N L+
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Query: 155 PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKN--LDSLLLNRNNLTGPIPSTIGFLN 212
T L L L L+ N + +E+ N L L L+ N + P +
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195
Query: 213 LLDELRLSHNRLDGPIPPTIG---NLTYLTSLDLSSNQLSGLLPREVGNLKY--LDSLSL 267
L L L++ +L + + T + +L LS++QLS LK+ L L L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 268 DRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHN--------- 318
NNL + +L L L YN + L ++ L + +
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315
Query: 319 SLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV-IPKSVF 377
SL L L L++ N I G + + N+ + +S + S + F
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375
Query: 378 R 378
Sbjct: 376 V 376
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 2e-69
Identities = 89/396 (22%), Positives = 146/396 (36%), Gaps = 32/396 (8%)
Query: 31 FLSGRIPSETG---ALSRLKVLDLSYNRLTGTIPSEIGSLRD--LLELNLSYNILNGSIP 85
L + + A + ++ L LS ++L+ T + L+ L L+LSYN LN
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265
Query: 86 LEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDL---------SLNQLSGRLPQEV 136
F L L L+ N + L S+ L N+ +L+L SL L
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325
Query: 137 GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL-VGPLPKEVG---NLKNLDS 192
LK L L +++N++ G + L L L L+ + + L E L
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385
Query: 193 LLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP-TIGNLTYLTSLDLSSNQLSGL 251
L L +N ++ +L L+ L L N + + L + + LS N+ L
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445
Query: 252 LPREVGNLKYLDSLSLDRNNL--IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQ 309
+ L L L R L + P L NLT L+L N + + L +
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505
Query: 310 LQNLAVNHNSLS--------GSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEV 361
L+ L + HN+L+ G + L HL L+L N + + + +
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565
Query: 362 DVSKNNLSGVIPKSVFRVPGLKW---SENNLEVENP 394
D+ NNL+ + LK +N +
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 2e-68
Identities = 83/368 (22%), Positives = 134/368 (36%), Gaps = 25/368 (6%)
Query: 31 FLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSI------ 84
L+ L +L+ L YN + + L ++ LNL + SI
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Query: 85 ---PLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG---- 137
F LK L L ++ N + G+ + L NL +L LS + S R
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378
Query: 138 NLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLN 196
L L L N ++ L L L L N + L + L+N+ + L+
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Query: 197 RNNLTGPIPSTIGFLNLLDELRLSHNRLDG--PIPPTIGNLTYLTSLDLSSNQLSGLLPR 254
N ++ + L L L L P L LT LDLS+N ++ +
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 255 EVGNLKYLDSLSLDRNNL--------IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN 306
+ L+ L+ L L NNL G + L++L LNL N + +
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558
Query: 307 CSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKI-PNVSEVDVSK 365
+L+ + + N+L+ S N + L+ L+L N I G N++E+D+
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618
Query: 366 NNLSGVIP 373
N
Sbjct: 619 NPFDCTCE 626
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 7e-56
Identities = 78/363 (21%), Positives = 126/363 (34%), Gaps = 26/363 (7%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYN---------RLTGTIPSEIG 65
F P L F + + L ++ L+L + L
Sbjct: 268 FAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326
Query: 66 SLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIG----NLTNLTHL 121
L+ L LN+ N + G F L +L L L + ++ + L L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 122 DLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP-STLYHLNQLSTLYLAYNNLVGPL 180
+L+ N++S L +L L L N + + L + +YL+YN +
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446
Query: 181 PKEVGNLKNLDSLLLNRNNLTG--PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYL 238
+ +L L+L R L PS L L L LS+N + + L L
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506
Query: 239 TSLDLSSNQLS--------GLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLN 290
LDL N L+ G + L +L L+L+ N L L ++
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566
Query: 291 LGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIG-NLIHLRQLDLSHNFINGTIP 349
LG N LN+ N L++L + N ++ G +L +LD+ N + T
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626
Query: 350 SQL 352
S
Sbjct: 627 SIA 629
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 3e-41
Identities = 63/253 (24%), Positives = 89/253 (35%), Gaps = 12/253 (4%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIP-SEIGSLRDLLELNLSYNILNGSIPLEFGN 90
+S L L+VLDL N + + E L ++ E+ LSYN F
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452
Query: 91 LKDLYDLRLQGNKLDGL--IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLD 148
+ L L L+ L + PS L NLT LDLS N ++ + L+ L L L
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512
Query: 149 NNNLT--------GPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200
+NNL G L L+ L L L N + +L L + L NNL
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572
Query: 201 TGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIG-NLTYLTSLDLSSNQLSGLLPREVGNL 259
S L L L N + G LT LD+ N +
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFV 632
Query: 260 KYLDSLSLDRNNL 272
+++ + L
Sbjct: 633 NWINETHTNIPEL 645
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-27
Identities = 54/248 (21%), Positives = 78/248 (31%), Gaps = 37/248 (14%)
Query: 15 FTCFPNLVTFRIWGTRFLS-GRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLEL 73
F P+L + + PS L L +LDLS N + + L L L
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509
Query: 74 NLSYNILN--------GSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125
+L +N L G L L+ L L+ N D + +L L +DL L
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569
Query: 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVG 185
N L+ N +L SL L N +T
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP----------------------- 606
Query: 186 NLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPI----PPTIGNLTYLTSL 241
+NL L + N S F+N ++E + L PP +
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF-PVRLF 665
Query: 242 DLSSNQLS 249
D SS + S
Sbjct: 666 DTSSCKDS 673
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 244 bits (624), Expect = 6e-71
Identities = 71/416 (17%), Positives = 146/416 (35%), Gaps = 43/416 (10%)
Query: 9 ELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLR 68
E+ + +L +I I L++L+++ + + T +
Sbjct: 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV----- 467
Query: 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL 128
D + N Y + L + NLKDL D+ L +P + +L L L+++ N+
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527
Query: 129 SG---------RLPQEVGNLKNLVSLFLDNNNLTG-PIPSTLYHLNQLSTLYLAYNNLVG 178
RL + + ++ NNL P ++L + +L L +N +
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587
Query: 179 PLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDG-PIPPTIGNLTY 237
+ G L L L+ N + F + ++ L SHN+L P ++
Sbjct: 588 --LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645
Query: 238 LTSLDLSSNQLSGLLPR-----EVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG 292
+ S+D S N++ + +++L N + + ++++ L
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705
Query: 293 YNQLNS-------SIPPELMNCSQLQNLAVNHNSLSGSIPSEI--GNLIHLRQLDLSHNF 343
N + S N L + + N L+ S+ + L +L +D+S+N
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC 764
Query: 344 INGTIPSQLGKIPNVSEVDVSK------NNLSGVIPKSVFRVPGLKW---SENNLE 390
+ + P+Q + + N + P + P L N++
Sbjct: 765 FS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 3e-70
Identities = 69/397 (17%), Positives = 134/397 (33%), Gaps = 40/397 (10%)
Query: 14 NFTCFPNLVTFR--IWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLL 71
FT V + L L ++L +P + L +L
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518
Query: 72 ELNLSYNILNG---------SIPLEFGNLKDLYDLRLQGNKLDGLIPS-SIGNLTNLTHL 121
LN++ N + + + + N L+ S S+ + L L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578
Query: 122 DLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG-PL 180
D N++ + G L L LD N + +Q+ L ++N L P
Sbjct: 579 DCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636
Query: 181 PKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNL-----LDELRLSHNRLDGPIPPTIGNL 235
++ + S+ + N + + ++ + LS+N +
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696
Query: 236 TYLTSLDLSSNQLSGL-------LPREVGNLKYLDSLSLDRNNLIGPIPPTI--GYLTNL 286
+ ++++ LS+N ++ + N L ++ L N L + L L
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYL 755
Query: 287 TSLNLGYNQLNSSIPPELMNCSQLQ------NLAVNHNSLSGSIPSEIGNLIHLRQLDLS 340
+++++ YN SS P + +N SQL+ N + P+ I L QL +
Sbjct: 756 SNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814
Query: 341 HNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
N I + +L P + +D++ N + SV
Sbjct: 815 SNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVC 848
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 3e-61
Identities = 63/408 (15%), Positives = 117/408 (28%), Gaps = 59/408 (14%)
Query: 33 SGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLK 92
+ + R+ L L+ G +P IG L +L L+ + S L
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371
Query: 93 DLYDLRLQGNKLDGLIPS-----------------------SIGNLTNLTHLDLSLNQLS 129
+ +++ + + + + L Q+
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431
Query: 130 G------RLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKE 183
+ + + L L ++ N+ T + Y
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELS 486
Query: 184 VGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGP---------IPPTIGN 234
NLK+L + L +P + L L L ++ NR +
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546
Query: 235 LTYLTSLDLSSNQLSGL-LPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGY 293
+ + N L + + L L N + G LT L L Y
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDY 604
Query: 294 NQLNSSIPPELM-NCSQLQNLAVNHNSLSGSIPS--EIGNLIHLRQLDLSHNFINGTIPS 350
NQ+ IP + Q++ L +HN L IP+ ++ + +D S+N I +
Sbjct: 605 NQI-EEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662
Query: 351 QLGKIP-----NVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENNLE 390
+ N S V +S N + + + S N +
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 3e-56
Identities = 60/335 (17%), Positives = 121/335 (36%), Gaps = 31/335 (9%)
Query: 34 GRIPSETGALSRLKVLDLSYNRLTGTIPS-EIGSLRDLLELNLSYNILNGSIPLEFGNLK 92
R+ + ++++ + YN L S + + L L+ +N + + FG
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595
Query: 93 DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ--EVGNLKNLVSLFLDNN 150
L DL+L N+++ + + L S N+L +P ++ + S+ N
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYN 654
Query: 151 NLTGPIPSTLYHLN-----QLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT---- 201
+ + ++ ST+ L+YN + + + +++L+ N +T
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714
Query: 202 ---GPIPSTIGFLNLLDELRLSHNRLDGPIPPTI--GNLTYLTSLDLSSNQLSGLLPREV 256
P LL + L N+L + L YL+++D+S N S P +
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSF-PTQP 772
Query: 257 GNLKYLDSLSLDR------NNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQL 310
N L + + N ++ P I +L L +G N + + +L QL
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQL 829
Query: 311 QNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
L + N + + I L ++
Sbjct: 830 YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 8e-47
Identities = 57/371 (15%), Positives = 110/371 (29%), Gaps = 40/371 (10%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L++ + + I L+ + + + + +
Sbjct: 251 LTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELD 309
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
+ N +T L L+ GR+P +G L L L ++ T
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369
Query: 163 LNQLSTLYLAYNNLVGPLPKEVG------NLKNLDSLLLNRNNLTGPIPSTIGFLNLLDE 216
+ + K NL +L +NRN PI +
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ 429
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL-------------------LPREVG 257
+ NR+ I I LT L + +++ +
Sbjct: 430 IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488
Query: 258 NLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS---------SIPPELMNCS 308
NLK L + L + +P + L L SLN+ N+ S + +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 309 QLQNLAVNHNSLSGSIPS-EIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNN 367
++Q + +N+L S + ++ L LD HN + G ++++ + N
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQ 606
Query: 368 LSGVIPKSVFR 378
+ IP+
Sbjct: 607 IEE-IPEDFCA 616
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 23/261 (8%), Positives = 74/261 (28%), Gaps = 19/261 (7%)
Query: 113 GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLA 172
T L + ++ + S + + + + +P+ Y Q+
Sbjct: 168 RVTTELKGMKVTYKEDSKEHQNPDNANDKYMDIGVATCDSAVWLPAGTY---QVVAYTTY 224
Query: 173 YNNLVGPLPKEVGNLKNLD-SLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPT 231
+ + E +++ +++ N+ +P + I
Sbjct: 225 SQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQL-------------KETAEYIKDY 271
Query: 232 IGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNL 291
+LD + + + + + + + + +T L+L
Sbjct: 272 KALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDLDNNGRVTGLSL 330
Query: 292 GYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPS- 350
+P + ++L+ L+ +S + S + + + I
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390
Query: 351 QLGKIPNVSEVDVSKNNLSGV 371
L ++ D+ ++ ++
Sbjct: 391 FLDYDQRLNLSDLLQDAINRN 411
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 3e-62
Identities = 78/377 (20%), Positives = 119/377 (31%), Gaps = 37/377 (9%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSE-IGSLRDLLELNLSYNILNGSIPLE------F 88
I RL L L N + + I L L L LE
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251
Query: 89 GNLKDLYDLRLQGNKLD---GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSL 145
L +L + LD I LTN++ L + L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHL 309
Query: 146 FLDNNNLT-------------------GPIPSTLYHLNQLSTLYLAYNNL--VGPLPKEV 184
L N G + L L L L+ N L G +
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 185 GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI-GNLTYLTSLDL 243
+L L L+ N + + S L L+ L H+ L ++ +L L LD+
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 244 SSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP-TIGYLTNLTSLNLGYNQLNSSIPP 302
S L L+ L + N+ P L NLT L+L QL P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 303 ELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIP-NVSEV 361
+ S LQ L ++HN+ L L+ LD S N I + +L P +++ +
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548
Query: 362 DVSKNNLSGVIPKSVFR 378
++++N+ + F
Sbjct: 549 NLTQNDFACTCEHQSFL 565
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 8e-62
Identities = 85/403 (21%), Positives = 133/403 (33%), Gaps = 44/403 (10%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L + L+VLDLS + SL L L L+ N + F L
Sbjct: 40 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL-SGRLPQEVGNLKNLVSLFLDNN 150
L L L L IG+L L L+++ N + S +LP+ NL NL L L +N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Query: 151 NLTGPIPSTLYHLNQLS----TLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPS 206
+ + L L+Q+ +L L+ N + + L L L N + +
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 207 T-IGFLNLLDELRLSHNRLDGPI---PPTIGNLTYLTSLDLSSNQLSGL------LPREV 256
T I L L+ RL L L +L + +L+ L +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278
Query: 257 GNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS------------------ 298
L + S SL + Y L L +
Sbjct: 279 NCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336
Query: 299 -SIPPELMNCSQLQ--NLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKI 355
++ L+ +L+ N S G L+ LDLS N + T+ S +
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395
Query: 356 PNVSEVDVSKNNLSGVIPKSVFR-VPGLKW---SENNLEVENP 394
+ +D +NL + SVF + L + S + V
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 4e-61
Identities = 78/390 (20%), Positives = 137/390 (35%), Gaps = 43/390 (11%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
K LDLS+N L S +L L+LS + + +L L L L GN
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG-PIPSTLYH 162
+ L + L++L L L+ +G+LK L L + +N + +P +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLD----SLLLNRNNLTGPIPSTIGFLNLLDELR 218
L L L L+ N + ++ L + SL L+ N + P + L +L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH-KLT 206
Query: 219 LSHNRLDGPIPPT-IGNLTYLTSLDLSSNQLSG---LLPREVGNLKYLDSLSLDRNNL-- 272
L +N + T I L L L + L + L+ L +L+++ L
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 273 ----IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLS------- 321
+ I LTN++S +L + Q+L + +
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKL 324
Query: 322 ------------GSIPSEIGNLIHLRQLDLSHNFIN--GTIPSQLGKIPNVSEVDVSKNN 367
G +L L LDLS N ++ G ++ +D+S N
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 368 LSGVIPKSVFRVPGLKW---SENNLEVENP 394
+ + + + L+ +NL+ +
Sbjct: 385 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 2e-59
Identities = 83/370 (22%), Positives = 132/370 (35%), Gaps = 16/370 (4%)
Query: 2 DNNGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIP 61
+ N + S L C + FR+ + I L+ + L +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 62 SEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHL 121
L L L+ +LK L +G S +L +L L
Sbjct: 300 --FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFL 352
Query: 122 DLSLNQLS--GRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP 179
DLS N LS G Q +L L L N + + S L QL L ++NL
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 180 LPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP-TIGNLTY 237
V +L+NL L ++ + L+ L+ L+++ N P L
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 238 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLN 297
LT LDLS QL L P +L L L++ NN L +L L+ N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 298 SSIPPELMNC-SQLQNLAVNHNSLSGSIPSE--IGNLIHLRQLDLSHNFINGTIPSQLGK 354
+S EL + S L L + N + + + + + RQL + + PS
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 591
Query: 355 IPNVSEVDVS 364
+P V ++++
Sbjct: 592 MP-VLSLNIT 600
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 2e-61
Identities = 65/337 (19%), Positives = 124/337 (36%), Gaps = 9/337 (2%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
+ L+ S+N L + L +L L+L+ + F + L L L N L
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 106 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165
+ +++ L HL +S + N K L SL+L +N+++ + +
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154
Query: 166 LSTLYLAYNNLVGPLPKEVGNLKNLD--SLLLNRNNLTGPIPSTIGFLNLLDELRLSHNR 223
L L N + +++ +L+ SL LN N++ G I + L +
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQ 213
Query: 224 LDGPIPPTIGN--LTYLTSLDLSSNQLSGLLPREVGNLK--YLDSLSLDRNNLIGPIPPT 279
I + N + L + P L ++S++L ++ T
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339
+ L L+L L S +P L+ S L+ L ++ N N L L +
Sbjct: 274 FHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 340 SHNFINGTIPSQ-LGKIPNVSEVDVSKNNLSGVIPKS 375
N + + L + N+ E+D+S +++ +
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 5e-61
Identities = 71/380 (18%), Positives = 132/380 (34%), Gaps = 13/380 (3%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L + LK L ++ + + + L L L N ++ +
Sbjct: 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS-GRLPQEVGNLKNLVSLFLDNN 150
+ L L Q N + L + +L T+L L+LN + + SL
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212
Query: 151 NLTGPIPSTLYH--LNQLSTLYLAYNNLVGPLPKEVGNLK--NLDSLLLNRNNLTGPIPS 206
I L + + L + P L +++S+ L ++ +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 207 TIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266
T + L EL L+ L +P + L+ L L LS+N+ L N L LS
Sbjct: 273 TFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 267 LDRNNLIGPIPP-TIGYLTNLTSLNLGYNQLNSS--IPPELMNCSQLQNLAVNHNSLSGS 323
+ N + + L NL L+L ++ + +S +L N S LQ+L +++N
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 324 IPSEIGNLIHLRQLDLSHNFINGTIP-SQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGL 382
L LDL+ + S + + +++S + L + +P L
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451
Query: 383 KW---SENNLEVENPVISEN 399
+ N+ N + +
Sbjct: 452 QHLNLQGNHFPKGNIQKTNS 471
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 1e-59
Identities = 64/338 (18%), Positives = 116/338 (34%), Gaps = 11/338 (3%)
Query: 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDG 106
K + L IP + L S+N+L F L +L L L ++
Sbjct: 15 KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 107 LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQL 166
+ + + L L L+ N L + K L LF ++ L++ L
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 167 STLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLD--ELRLSHNRL 224
+LYL N++ + + L L N + + L L L+ N +
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191
Query: 225 DGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGN--LKYLDSLSLDRNNL--IGPIPPTI 280
G I P + SL+ Q ++ + + N ++ L + + + I P
Sbjct: 192 AG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 281 GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLS 340
++ S+NL + + S LQ L + LS +PS + L L++L LS
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309
Query: 341 HNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR 378
N P+++ + + N +
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 2e-59
Identities = 77/379 (20%), Positives = 139/379 (36%), Gaps = 12/379 (3%)
Query: 2 DNNGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGA-LSRLKVLDLSYNRLTGTI 60
+ NGN + + GT+ L + + L +
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244
Query: 61 PSEIGSLRD--LLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNL 118
P+ L + + +NL + F L +L L L +PS + L+ L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTL 303
Query: 119 THLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPS-TLYHLNQLSTLYLAYNNL- 176
L LS N+ N +L L + N + + L +L L L L+++++
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 177 -VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI-GN 234
++ NL +L SL L+ N L+ L L+ RL + N
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423
Query: 235 LTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI---PPTIGYLTNLTSLNL 291
L L L+LS + L + L L L+L N+ ++ L L L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 292 GYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQ 351
+ L+S + + ++ ++HN L+ S + +L + L+L+ N I+ +PS
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542
Query: 352 LGKIPNVSEVDVSKNNLSG 370
L + +++ +N L
Sbjct: 543 LPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 4e-56
Identities = 74/395 (18%), Positives = 136/395 (34%), Gaps = 18/395 (4%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKV--LDLSYNRLTGTIPSEIGSLRDLLE 72
L + + +L + L+L+ N + I
Sbjct: 149 GFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQS 206
Query: 73 LNLSYNILNGSIP--LEFGNLKDLYDLRLQGNKLDGLIPSSIGNL--TNLTHLDLSLNQL 128
LN I L+ ++ L+ + + + P+ L ++ ++L +
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266
Query: 129 SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLK 188
L L L +L+ +PS L L+ L L L+ N N
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325
Query: 189 NLDSLLLNRNNLTGPIPS-TIGFLNLLDELRLSHNRLD--GPIPPTIGNLTYLTSLDLSS 245
+L L + N + + + L L EL LSH+ ++ + NL++L SL+LS
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
Query: 246 NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPEL 304
N+ L L+ L L L + L L LNL ++ L+ S
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445
Query: 305 MNCSQLQNLAVNHNSLSGSIPSEIG---NLIHLRQLDLSHNFINGTIPSQLGKIPNVSEV 361
LQ+L + N + L L L LS ++ + ++ V
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505
Query: 362 DVSKNNLSGVIPKSVFRVPGLK--WSENNLEVENP 394
D+S N L+ +++ + G+ + N++ + P
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIYLNLASNHISIILP 540
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 189 bits (481), Expect = 1e-52
Identities = 85/375 (22%), Positives = 136/375 (36%), Gaps = 14/375 (3%)
Query: 2 DNNGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIP 61
D + + C ++ + + + S L+ LDL+ L+ +P
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLS-ELP 294
Query: 62 SEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPS-SIGNLTNLTH 120
S + L L +L LS N + N L L ++GN + + + NL NL
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354
Query: 121 LDLSLNQL--SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG 178
LDLS + + S ++ NL +L SL L N QL L LA+ L
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414
Query: 179 PLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPI---PPTIGN 234
+ NL L L L+ + L L L L L N ++
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474
Query: 235 LTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYN 294
L L L LS LS + +LK ++ + L N L + +L + LNL N
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASN 533
Query: 295 QLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGK 354
++ +P L SQ + + + N L + N+ L + + T +
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDCT----CSNIYFLEWYKENMQKLEDTEDTLCEN 589
Query: 355 IPNVSEVDVSKNNLS 369
P + V +S LS
Sbjct: 590 PPLLRGVRLSDVTLS 604
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 4e-61
Identities = 81/331 (24%), Positives = 157/331 (47%), Gaps = 23/331 (6%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L+ L +T + L + +L ++ + SI L +L L L GN
Sbjct: 21 LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGN 76
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
++ + P + NL LT+L + N+++ + NL NL L+L+ +N++ P L +
Sbjct: 77 QITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LAN 130
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHN 222
L ++ +L L N+ + + N+ L+ L + + + P I L L L L++N
Sbjct: 131 LTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187
Query: 223 RLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGY 282
+++ P + +LT L NQ++ + P V N+ L+SL + N + P +
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241
Query: 283 LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
L+ LT L +G NQ++ + + ++L+ L V N +S S + NL L L L++N
Sbjct: 242 LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN 297
Query: 343 FINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373
+ +G + N++ + +S+N+++ + P
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 8e-59
Identities = 92/329 (27%), Positives = 145/329 (44%), Gaps = 23/329 (6%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
L + L ++ ++ I L +L LNL+ N + PL NL L +L +
Sbjct: 41 EELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLYIG 96
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTL 160
NK+ S++ NLTNL L L+ + +S + NL + SL L N+ S L
Sbjct: 97 TNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPL 151
Query: 161 YHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLS 220
++ L+ L + + + P + NL +L SL LN N + P + L L
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY 207
Query: 221 HNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI 280
N++ P + N+T L SL + +N+++ L P + NL L L + N + +
Sbjct: 208 VNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV 261
Query: 281 GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLS 340
LT L LN+G NQ++ L N SQL +L +N+N L IG L +L L LS
Sbjct: 262 KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319
Query: 341 HNFINGTIPSQLGKIPNVSEVDVSKNNLS 369
N I P L + + D + +
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 4e-54
Identities = 85/348 (24%), Positives = 152/348 (43%), Gaps = 28/348 (8%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
L + P L + + L + + E L+ + L + G K+
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57
Query: 106 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165
+ I LTNL +L+L+ NQ++ + NL L +L++ N +T S L +L
Sbjct: 58 SI--QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTN 111
Query: 166 LSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD 225
L LYL +N+ P + NL + SL L N+ S + + L+ L ++ +++
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK 168
Query: 226 GPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTN 285
P I NLT L SL L+ NQ+ + P + +L L + N + P + +T
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222
Query: 286 LTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
L SL +G N++ P L N SQL L + N +S + + +L L+ L++ N I
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI- 277
Query: 346 GTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENNLE 390
+ S L + ++ + ++ N L + + + L S+N++
Sbjct: 278 -SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 4e-46
Identities = 63/283 (22%), Positives = 118/283 (41%), Gaps = 20/283 (7%)
Query: 14 NFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLEL 73
+ L I + S L+ L+ L L+ + ++ S + +L + L
Sbjct: 83 PLSNLVKLTNLYIGTNKI---TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSL 137
Query: 74 NLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 133
NL N + N+ L L + +K+ + P I NLT+L L L+ NQ+
Sbjct: 138 NLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--I 192
Query: 134 QEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSL 193
+ +L +L N +T P + ++ +L++L + N + P + NL L L
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248
Query: 194 LLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLP 253
+ N ++ + + L L L + N++ + NL+ L SL L++NQL
Sbjct: 249 EIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM 304
Query: 254 REVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQL 296
+G L L +L L +N++ P + L+ + S + +
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 2e-60
Identities = 63/326 (19%), Positives = 109/326 (33%), Gaps = 23/326 (7%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
S + L + + + + + N + G
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGR 66
Query: 103 KLDGLIPSSIGNLT--NLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTL 160
L + + T L+L L + P + L +L + +D L +P T+
Sbjct: 67 ALKAT-ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTM 123
Query: 161 YHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNL------- 213
L TL LA N L LP + +L L L + +P + +
Sbjct: 124 QQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182
Query: 214 --LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
L LRL + +P +I NL L SL + ++ LS L + +L L+ L L
Sbjct: 183 VNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCT 240
Query: 272 LIGPIPPTIGYLTNLTSLNL-GYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN 330
+ PP G L L L + L ++P ++ +QL+ L + +PS I
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 331 LIHLRQLDLSHNFINGTIPSQLGKIP 356
L + + + + P
Sbjct: 300 LPANCIILVPPHLQAQLDQHRPVARP 325
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-41
Identities = 57/305 (18%), Positives = 101/305 (33%), Gaps = 27/305 (8%)
Query: 82 GSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKN 141
GS + +L QG+ + + D + + R N N
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57
Query: 142 LVSLFLDNNNLTGPIPSTLYHLNQ--LSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN 199
L L Q L L L P + L +L + ++
Sbjct: 58 PQIETRTGRALKA-TADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115
Query: 200 LTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNL 259
L +P T+ L+ L L+ N L +P +I +L L L + + LP + +
Sbjct: 116 LME-LPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLAST 173
Query: 260 KYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNS 319
L NL SL L + + S+P + N L++L + ++
Sbjct: 174 D---------------ASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSP 217
Query: 320 LSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRV 379
LS ++ I +L L +LDL P G + + + + +P + R+
Sbjct: 218 LS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276
Query: 380 PGLKW 384
L+
Sbjct: 277 TQLEK 281
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-25
Identities = 37/239 (15%), Positives = 86/239 (35%), Gaps = 37/239 (15%)
Query: 177 VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFL--------------------NLLDE 216
+G + ++L + P + N
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60
Query: 217 LRLSHNRLDGPIPPTIGNLTY--LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG 274
+ L + + T +L+L S L P + L +L +++D L+
Sbjct: 61 ETRTGRAL-KATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLME 118
Query: 275 PIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN---- 330
+P T+ L +L L N L ++P + + ++L+ L++ +P + +
Sbjct: 119 -LPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 331 -----LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW 384
L++L+ L L I ++P+ + + N+ + + + LS + ++ +P L+
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 196 bits (499), Expect = 4e-55
Identities = 72/342 (21%), Positives = 132/342 (38%), Gaps = 22/342 (6%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
K +DLS+N L + +L L+LS + + L L +L L GN +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 106 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG-PIPSTLYHLN 164
P S LT+L +L +L+ +G L L L + +N + +P+ +L
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153
Query: 165 QLSTLYLAYNNLVGPLPKEVGNLKNLDSLL----LNRNNLTGPIPSTIGFLNLLDELRLS 220
L + L+YN + ++ L+ + ++ N + + L EL L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH-ELTLR 212
Query: 221 HNRLDGPIPPT-IGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSL--------SLDRNN 271
N I T + NL L L + E+ ++ L L N
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNL 331
L N+++++L + ++ + Q+L++ L P+ +L
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK-QFPT--LDL 327
Query: 332 IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373
L+ L L+ N G+I + +P++S +D+S+N LS
Sbjct: 328 PFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGC 367
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 191 bits (486), Expect = 3e-53
Identities = 73/370 (19%), Positives = 121/370 (32%), Gaps = 24/370 (6%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSE-IGSLRDLLELNLSYNILNGSIPLE------F 88
I + +L L L N + I + +L L L LE
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255
Query: 89 GNLKDLY--DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLF 146
L D+ + RL L N++ + L+ + ++V SL
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLS 313
Query: 147 LDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPS 206
+ L P+ L L +L L N K L +L L L+RN L+
Sbjct: 314 IIRCQLKQ-FPTL--DLPFLKSLTLTMNKGSISFKK--VALPSLSYLDLSRNALSFSGCC 368
Query: 207 TIGFLNL--LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV-GNLKYLD 263
+ L L L LS N + L L LD + L + +L+ L
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLSG 322
L + N LT+L +L + N + N + L L ++ L
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487
Query: 323 SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGL 382
L L+ L++SHN + S ++ ++S +D S N + L
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547
Query: 383 KW---SENNL 389
+ + N++
Sbjct: 548 AFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 9e-53
Identities = 78/374 (20%), Positives = 124/374 (33%), Gaps = 22/374 (5%)
Query: 10 LSQLNFTCF--PNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTI------P 61
+ + F L + G S + + L+ L V L P
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252
Query: 62 SEIGSLRDL--LELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLT 119
S + L D+ E L+Y ++F L ++ + L G + L +
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQ 310
Query: 120 HLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL--V 177
L + QL +L L SL L N + L LS L L+ N L
Sbjct: 311 SLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFS 365
Query: 178 GPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP-TIGNLT 236
G +L L L+ N + + L L L H+ L +L
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424
Query: 237 YLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP-TIGYLTNLTSLNLGYNQ 295
L LD+S L L++L + N+ TNLT L+L Q
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484
Query: 296 LNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKI 355
L +LQ L ++HN+L S L L LD S N I +
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544
Query: 356 PNVSEVDVSKNNLS 369
+++ +++ N+++
Sbjct: 545 KSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 2e-47
Identities = 83/401 (20%), Positives = 140/401 (34%), Gaps = 27/401 (6%)
Query: 9 ELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLR 68
L L + S ++P+ L+ L +DLSYN + +++ LR
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
Query: 69 DL----LELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPS-SIGNLTNLTHLDL 123
+ L L++S N ++ F +K L++L L+GN I + NL L L
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236
Query: 124 SLNQLSGRLPQEV------GNLKNLVSLFLD--NNNLTGPIPSTLYHLNQLSTLYLAYNN 175
L + E+ L ++ N + L +S + LA +
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296
Query: 176 LVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNL 235
+ ++V SL + R L P+ L L L L+ N+ I L
Sbjct: 297 IKY--LEDVPKHFKWQSLSIIRCQLKQ-FPT--LDLPFLKSLTLTMNKGS--ISFKKVAL 349
Query: 236 TYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD-RNNLIGPIPPTIGYLTNLTSLNLGYN 294
L+ LDLS N LS +L LD N + L L L+ ++
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409
Query: 295 QLNSSIPPE-LMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQ-L 352
L ++ +L L +++ + L L L ++ N S
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 353 GKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENNLE 390
N++ +D+SK L + + L+ S NNL
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 3e-44
Identities = 63/298 (21%), Positives = 109/298 (36%), Gaps = 13/298 (4%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L+ + + L+ + ++ L++ L +L L L L N
Sbjct: 284 LANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMN 338
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLS--GRLPQEVGNLKNLVSLFLDNNNLTGPIPSTL 160
K I L +L++LDLS N LS G +L L L N + +
Sbjct: 339 KGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANF 395
Query: 161 YHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRL 219
L +L L ++ L +L+ L L ++ N L L+ L++
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455
Query: 220 SHNRLDGPIPP-TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP 278
+ N N T LT LDLS QL + L L L++ NNL+
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
Query: 279 TIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
L +L++L+ +N++ +S L + +NS++ I L +++
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA-CICEHQKFLQWVKE 572
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 1/176 (0%)
Query: 2 DNNGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIP 61
D + N A + NF L + S +L +L LD+SY
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
Query: 62 SEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120
L L L ++ N + F N +L L L +L+ + L L
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501
Query: 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176
L++S N L L +L +L N + + L+ L N++
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 5e-54
Identities = 95/331 (28%), Positives = 146/331 (44%), Gaps = 27/331 (8%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L ++ L + + L +L ++N S N L PL NL L D+ + N
Sbjct: 45 LDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNN 100
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
++ + P + NLTNLT L L NQ++ + NL NL L L +N ++ L
Sbjct: 101 QIADITP--LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISA--LSG 154
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHN 222
L L L N + P + NL L+ L ++ N ++ S + L L+ L ++N
Sbjct: 155 LTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 209
Query: 223 RLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGY 282
++ P +G LT L L L+ NQL + + +L L L L N + P +
Sbjct: 210 QISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSG 263
Query: 283 LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
LT LT L LG NQ+++ P L + L NL +N N L P I NL +L L L N
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319
Query: 343 FINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373
I+ P + + + + N +S V
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSDVSS 348
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 4e-50
Identities = 98/337 (29%), Positives = 144/337 (42%), Gaps = 28/337 (8%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
L+ L L L N++T P + +L +L L LS N ++ L L L L
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFG 164
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTL 160
D + NLT L LD+S N++S + L NL SL NN ++ P L
Sbjct: 165 NQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--L 217
Query: 161 YHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLS 220
L L L L N L + +L NL L L N ++ P + L L EL+L
Sbjct: 218 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273
Query: 221 HNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI 280
N++ P + LT LT+L+L+ NQL + P + NLK L L+L NN+ P +
Sbjct: 274 ANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V 327
Query: 281 GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLS 340
LT L L N+++ L N + + L+ HN +S P + NL + QL L+
Sbjct: 328 SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383
Query: 341 HNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
+ NVS + KN +I +
Sbjct: 384 DQAWTNAPVNYK---ANVSIPNTVKNVTGALIAPATI 417
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 1e-47
Identities = 82/353 (23%), Positives = 130/353 (36%), Gaps = 42/353 (11%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
L+ L L+LS N ++ S + L L +L+ + + NL L L +
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDIS 185
Query: 101 GNKLDGLIP--------------------SSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK 140
NK+ + + +G LTNL L L+ NQL + +L
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLT 243
Query: 141 NLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200
NL L L NN ++ P L L +L+ L L N + P + L L +L LN N L
Sbjct: 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 299
Query: 201 TGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLK 260
P I L L L L N + P + +LT L L +N++S + + NL
Sbjct: 300 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 353
Query: 261 YLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSL 320
++ LS N + P + LT +T L L ++ P + N N
Sbjct: 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW-TNAPVNYKANVSIPNTVKNVTGA 410
Query: 321 SGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373
P+ I + + D++ N + + SG +
Sbjct: 411 L-IAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 1e-46
Identities = 80/312 (25%), Positives = 140/312 (44%), Gaps = 25/312 (8%)
Query: 62 SEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHL 121
+L + ++ L + ++ +L + L+ + + + L NLT +
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQI 73
Query: 122 DLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLP 181
+ S NQL+ + NL LV + ++NN + P L +L L+ L L N + P
Sbjct: 74 NFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129
Query: 182 KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSL 241
+ NL NL+ L L+ N ++ + L L +L + D + NLT L L
Sbjct: 130 --LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTLERL 182
Query: 242 DLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP 301
D+SSN++S + + L L+SL N + P +G LTNL L+L NQL
Sbjct: 183 DISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--I 236
Query: 302 PELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEV 361
L + + L +L + +N +S P + L L +L L N I+ P L + ++ +
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292
Query: 362 DVSKNNLSGVIP 373
++++N L + P
Sbjct: 293 ELNENQLEDISP 304
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 2e-40
Identities = 77/313 (24%), Positives = 126/313 (40%), Gaps = 22/313 (7%)
Query: 13 LNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLE 72
L I + S L+ L+ L + N+++ P +G L +L E
Sbjct: 171 KPLANLTTLERLDISSNKV---SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDE 225
Query: 73 LNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 132
L+L+ N L I +L +L DL L N++ L P + LT LT L L NQ+S
Sbjct: 226 LSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-- 279
Query: 133 PQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDS 192
+ L L +L L+ N L P + +L L+ L L +NN+ P V +L L
Sbjct: 280 ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335
Query: 193 LLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLL 252
L N ++ + L ++ L HN++ P + NLT +T L L+ +
Sbjct: 336 LFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391
Query: 253 PREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQN 312
N+ +++ LI P TI + T ++ +N S SQ
Sbjct: 392 VNYKANVSIPNTVKNVTGALIAPA--TISDGGSYTEPDITWNLP-SYTNEVSYTFSQPVT 448
Query: 313 LAVNHNSLSGSIP 325
+ + SG++
Sbjct: 449 IGKGTTTFSGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 5e-24
Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 32/227 (14%)
Query: 166 LSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD 225
L + + + + + L +L + N+T + L+ + L+ +
Sbjct: 3 LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59
Query: 226 GPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTN 285
+ L LT ++ S+NQL+ + P + NL L + ++ N + P + LTN
Sbjct: 60 --SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTN 113
Query: 286 LTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG-------------------SIPS 326
LT L L NQ+ P L N + L L ++ N++S +
Sbjct: 114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK 171
Query: 327 EIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373
+ NL L +LD+S N + + S L K+ N+ + + N +S + P
Sbjct: 172 PLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 216
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 4e-50
Identities = 61/308 (19%), Positives = 117/308 (37%), Gaps = 16/308 (5%)
Query: 83 SIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL 142
+I N ++ + L + S + N+ LDLS N LS ++ L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 143 VSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTG 202
L L +N L + L L+ L TL L N + +E+ ++++L NN++
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113
Query: 203 PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL-LPREVGNLKY 261
+ + + L++N++ G + + LDL N++ + +
Sbjct: 114 -VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 262 LDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLS 321
L+ L+L N + + + L +L+L N+L + + PE + + + +++ +N L
Sbjct: 171 LEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV 227
Query: 322 GSIPSEIGNLIHLRQLDLSHNFIN-GTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVP 380
I + +L DL N + GT+ K V V + VP
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 381 GLKWSENN 388
L
Sbjct: 287 TLGHYGAY 294
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 1e-49
Identities = 62/304 (20%), Positives = 114/304 (37%), Gaps = 16/304 (5%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
I +R K+ ++ + L + S S ++ EL+LS N L+ + L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGP 155
L L N L + +L+ L LDL+ N + E+ ++ +L NNN++
Sbjct: 62 LLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR- 113
Query: 156 IPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTG-PIPSTIGFLNLL 214
+ + +YLA N + + G + L L N + + L
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG 274
+ L L +N + + + L +LDLSSN+L+ + E + + +SL N L+
Sbjct: 172 EHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL 228
Query: 275 PIPPTIGYLTNLTSLNLGYNQLNSSIPPEL-MNCSQLQNLAVNHNSLSGSIPSEIGNLIH 333
I + + NL +L N + + ++Q +A E +
Sbjct: 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287
Query: 334 LRQL 337
L
Sbjct: 288 LGHY 291
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 2e-48
Identities = 56/319 (17%), Positives = 109/319 (34%), Gaps = 17/319 (5%)
Query: 60 IPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLT 119
I + ++ + L ++ + ++ +L L GN L + + + T L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 120 HLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP 179
L+LS N L ++ +L L +L L+NN + L + TL+ A NN+
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR- 113
Query: 180 LPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDG-PIPPTIGNLTYL 238
+ + ++ L N +T G + + L L N +D + L
Sbjct: 114 VSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 239 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 298
L+L N + + + L +L L N L + P +T ++L N+L
Sbjct: 172 EHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL-V 227
Query: 299 SIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNV 358
I L L++ + N + R ++ + + Q + V
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTV 285
Query: 359 SEVDVSKNNLSGVIPKSVF 377
+ +P
Sbjct: 286 PTLGHYGAYCCEDLPAPFA 304
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 7e-48
Identities = 54/309 (17%), Positives = 102/309 (33%), Gaps = 17/309 (5%)
Query: 35 RIPSETGA-LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKD 93
+ + +K LDLS N L+ +++ L LNLS N+L + +L
Sbjct: 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETL-DLESLST 81
Query: 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLT 153
L L L N + + ++ L + N +S R+ + +++L NN +T
Sbjct: 82 LRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKIT 133
Query: 154 GPIPSTLYHLNQLSTLYLAYNNLVG-PLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLN 212
+++ L L N + + + L+ L L N + + +
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFA 191
Query: 213 LLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
L L LS N+L + P + +T + L +N+L + + + + L+ L N
Sbjct: 192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249
Query: 273 IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLI 332
+ N + + C+ LI
Sbjct: 250 HC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308
Query: 333 HLRQLDLSH 341
L H
Sbjct: 309 ALGHHHHHH 317
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-48
Identities = 62/358 (17%), Positives = 119/358 (33%), Gaps = 20/358 (5%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
L + S + +K LDLS N L+ +++ L LNLS N+L ++ +L
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL 79
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151
L L L N + + ++ L + N +S R+ + +++L NN
Sbjct: 80 STLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNK 131
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVG-PLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGF 210
+T +++ L L N + + + L+ L L N + + +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-V 189
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
L L LS N+L + P + +T + L +N+L + + + + L+ L N
Sbjct: 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN 330
+ N + + C+
Sbjct: 248 GFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306
Query: 331 LIHLRQLDLSHNFING----TIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW 384
LI L++ + + G + + E+D K VI + R
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-45
Identities = 62/314 (19%), Positives = 119/314 (37%), Gaps = 16/314 (5%)
Query: 83 SIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL 142
+I N ++ + L + S + N+ LDLS N LS ++ L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 143 VSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTG 202
L L +N L + L L+ L TL L N + +E+ ++++L NN++
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113
Query: 203 PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL-LPREVGNLKY 261
+ + + L++N++ G + + LDL N++ + +
Sbjct: 114 -VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 262 LDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLS 321
L+ L+L N + + + L +L+L N+L + + PE + + + +++ +N L
Sbjct: 171 LEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV 227
Query: 322 GSIPSEIGNLIHLRQLDLSHNFIN-GTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVP 380
I + +L DL N + GT+ K V V + VP
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 381 GLKWSENNLEVENP 394
L + P
Sbjct: 287 TLGHYGAYCCEDLP 300
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 6e-45
Identities = 58/331 (17%), Positives = 112/331 (33%), Gaps = 16/331 (4%)
Query: 60 IPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLT 119
I + ++ + L ++ + ++ +L L GN L + + + T L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 120 HLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP 179
L+LS N L ++ +L L +L L+NN + L + TL+ A NN+
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR- 113
Query: 180 LPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDG-PIPPTIGNLTYL 238
+ + ++ L N +T G + + L L N +D + L
Sbjct: 114 VSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 239 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 298
L+L N + + + L +L L N L + P +T ++L N+L
Sbjct: 172 EHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL-V 227
Query: 299 SIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNV 358
I L L++ + N + R ++ + +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 359 SEVDVSKNNLSGVIPKSVFRVPGLKWSENNL 389
+ + R+ LK E+ L
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-26
Identities = 55/356 (15%), Positives = 108/356 (30%), Gaps = 9/356 (2%)
Query: 9 ELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLR 68
L L+ C + + + + L+ L+L YN + + ++
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFA 191
Query: 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL 128
L L+LS N L + EF + + + L+ NKL I ++ NL H DL N
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249
Query: 129 S-GRLPQEVGNLKNLVSLFL-DNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGN 186
G L + + ++ LTG +L P +
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309
Query: 187 LKNLD-SLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS 245
LK + +LL + + T + E+ + I +L+
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
Query: 246 NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305
L + LD I T + + + +
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429
Query: 306 NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ-LDLSHNFINGTIPSQLGKIPNVSE 360
+ +++ + + + + E L L DL+ N T+ + + N++
Sbjct: 430 QNNAIRDWDMYQHKET-QLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 1e-47
Identities = 80/359 (22%), Positives = 126/359 (35%), Gaps = 45/359 (12%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
+ VL++ + LT T+P + + + L + N L S+P L+ L + GN
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTLE---VSGN 91
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
+L L P L L+ L L L L++ N LT +P
Sbjct: 92 QLTSL-PVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLTS-LPV---L 139
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHN 222
L L ++ N L LP L L N LT +P L EL +S N
Sbjct: 140 PPGLQELSVSDNQLAS-LPALPSELCKLW---AYNNQLTS-LPMLPSGLQ---ELSVSDN 191
Query: 223 RLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGY 282
+L +P L L +N+L+ LP LK L N + +P
Sbjct: 192 QLAS-LPTLPSE---LYKLWAYNNRLTS-LPALPSGLKELIVS----GNRLTSLPVLPS- 241
Query: 283 LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
L L + N+L +S+P S L +L+V N L+ +P + +L ++L N
Sbjct: 242 --ELKELMVSGNRL-TSLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294
Query: 343 FINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVENPVISENAP 401
++ Q + + + S R + E AP
Sbjct: 295 PLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 3e-40
Identities = 74/338 (21%), Positives = 121/338 (35%), Gaps = 56/338 (16%)
Query: 35 RIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94
+P + + L + N LT ++P+ LR L +S N L S+P+ L +L
Sbjct: 54 TLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLT-SLPVLPPGLLEL 106
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG 154
L L + L L + NQL+ LP L+ L + +N L
Sbjct: 107 SIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLPPGLQ---ELSVSDNQLAS 155
Query: 155 PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLL 214
+P+ ++L L+ N L LP L+ L ++ N L +P+ L L
Sbjct: 156 -LPALP---SELCKLWAYNNQLTS-LPMLPSGLQELS---VSDNQLAS-LPTLPSELYKL 206
Query: 215 D-----------------ELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVG 257
EL +S NRL +P L L +S N+L+ L P
Sbjct: 207 WAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVLPSELK---ELMVSGNRLTSL-PMLPS 261
Query: 258 NLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLA--- 314
L L N + +P ++ +L++ T++NL N L+ L + +
Sbjct: 262 GLLSLSV----YRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI 317
Query: 315 VNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 352
+ + S P E L L P+
Sbjct: 318 IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 5e-19
Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 38/197 (19%)
Query: 210 FLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDR 269
N L + + L +P + +T+L + N L+ LP L+ L+ +S
Sbjct: 38 LNNGNAVLNVGESGLTT-LPDCLPAH--ITTLVIPDNNLTS-LPALPPELRTLE-VS--- 89
Query: 270 NNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIG 329
N + +P L L+ + L + S L L + N L+ S+P
Sbjct: 90 GNQLTSLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLPP 141
Query: 330 NLIHLRQLDLSHNFINGTIPSQLGK-----------------IPNVSEVDVSKNNLSGVI 372
L++L +S N + ++P+ + + E+ VS N L+ +
Sbjct: 142 G---LQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SL 196
Query: 373 PKSVFRVPGLKWSENNL 389
P + L N L
Sbjct: 197 PTLPSELYKLWAYNNRL 213
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 7e-47
Identities = 92/334 (27%), Positives = 142/334 (42%), Gaps = 12/334 (3%)
Query: 16 TCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNL 75
C RF++ +P G + ++LDL NR+ E S L EL L
Sbjct: 8 ECSAQDRAVLCHRKRFVA--VPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL 63
Query: 76 SYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE 135
+ NI++ P F NL +L L L+ N+L + L+NLT LD+S N++ L
Sbjct: 64 NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM 123
Query: 136 VGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLL 194
+L NL SL + +N+L LN L L L NL +P E +L L L
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLR 182
Query: 195 LNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPR 254
L N+ + L L L +SH + P LTSL ++ L+ +
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242
Query: 255 EVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQN 312
V +L YL L+L N I I ++ L L + L QL + + P + L+
Sbjct: 243 AVRHLVYLRFLNLS-YNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRV 300
Query: 313 LAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFIN 345
L V+ N L+ ++ + ++ +L L L N +
Sbjct: 301 LNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 2e-43
Identities = 71/288 (24%), Positives = 126/288 (43%), Gaps = 7/288 (2%)
Query: 93 DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNL 152
+ L L N++ L + +L L+L+ N +S P NL NL +L L +N L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 153 TGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLN 212
L+ L+ L ++ N +V L +L NL SL + N+L LN
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 213 LLDELRLSHNRLDGPIPP-TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
L++L L L IP + +L L L L ++ + L L L +
Sbjct: 153 SLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLSGSIPSEI-G 329
+ + P Y NLTSL++ + L +++P + + L+ L +++N +S +I +
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLH 269
Query: 330 NLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L+ L+++ L + P + + ++VS N L+ + +SVF
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVF 316
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-26
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 8/237 (3%)
Query: 144 SLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGP 203
++ +P + + L L N + E + +L+ L LN N ++
Sbjct: 15 AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
P L L L L NRL L+ LT LD+S N++ LL +L L
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLSG 322
SL + N+L+ L +L L L L +SIP E L + L L + H +++
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNIN- 189
Query: 323 SIPSEI-GNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR 378
+I L L+ L++SH T+ N++ + ++ NL+ +P R
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR 245
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 1e-46
Identities = 65/360 (18%), Positives = 133/360 (36%), Gaps = 25/360 (6%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
I S + + E +L + + + + + + +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGP 155
L L +++ + + + L + N + P N+ L L L+ N+L+
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132
Query: 156 IPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLL 214
++ +L+TL ++ NNL + + +L +L L+ N LT + + + L
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSL 188
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG 274
+S+N L T+ + LD S N ++ + L L L NNL
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLTD 240
Query: 275 PIPPTIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLSGSIPSEIGNLIH 333
+ L ++L YN+L I + +L+ L +++N L ++ +
Sbjct: 241 --TAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296
Query: 334 LRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENNLE 390
L+ LDLSHN + + + + + + N++ + S LK S N+ +
Sbjct: 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTH--HTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 1e-36
Identities = 70/341 (20%), Positives = 131/341 (38%), Gaps = 35/341 (10%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSET-GALSRLKVLDLSYNRLTGTIPSEI-GSLRDLLE 72
F + + + I + ++ L + +N + +P + ++ L
Sbjct: 65 LDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121
Query: 73 LNLSYNILNGSIPLE-FGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR 131
L L N L+ S+P F N L L + N L+ + + T+L +L LS N+L+
Sbjct: 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-H 179
Query: 132 LPQEVGNLKNLVSLFLDNNNLTG-PIPSTLYHLN---------------QLSTLYLAYNN 175
+ + + +L + N L+ IP + L+ +L+ L L +NN
Sbjct: 180 VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 237
Query: 176 LVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNL 235
L + N L + L+ N L + + L+ L +S+NRL + +
Sbjct: 238 LTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 294
Query: 236 TYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQ 295
L LDLS N L + R L++L LD +N I + L +L L +N
Sbjct: 295 PTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLD-HNSIVTLKL--STHHTLKNLTLSHND 350
Query: 296 LNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
+ + L + AV+ I ++ + + ++
Sbjct: 351 WDCNSLRALF--RNVARPAVDDADQHCKIDYQLEHGLCCKE 389
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 8e-36
Identities = 66/341 (19%), Positives = 128/341 (37%), Gaps = 37/341 (10%)
Query: 77 YNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIG-----NLTNLTHLDLSLNQLSGR 131
YN+ + + YD +D L N + + + +
Sbjct: 1 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-K 59
Query: 132 LPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKN 189
LP + + + + L L++ + + + + LY+ +N + LP V N+
Sbjct: 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL 118
Query: 190 LDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLS 249
L L+L RN+L+ L L +S+N L+ T T L +L LSSN+L+
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
Query: 250 GLLPREVGNLKYLD----------------SLSLDRNNLIGPIPPTIGYLTNLTSLNLGY 293
+ + +L + + L N+ I + + LT L L +
Sbjct: 179 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQH 235
Query: 294 NQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQL 352
N L L+N L + +++N L I + L +L +S+N + +
Sbjct: 236 NNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291
Query: 353 GKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENNLE 390
IP + +D+S N+L + ++ + L+ N++
Sbjct: 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 5e-44
Identities = 74/328 (22%), Positives = 124/328 (37%), Gaps = 20/328 (6%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L+ K++ + + + + S R + LNL+ + F + L + N
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLY 161
+ L P N+ LT L L N LS LP+ + N L +L + NNNL T
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
Query: 162 HLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSH 221
L L L+ N L + + + +L ++ N L+ T+ ++EL SH
Sbjct: 169 ATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASH 220
Query: 222 NRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIG 281
N ++ + LT L L N L+ + N L + L N L +
Sbjct: 221 NSINV-VRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275
Query: 282 YLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSH 341
+ L L + N+L ++ L+ L ++HN L + L L L H
Sbjct: 276 KMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333
Query: 342 NFINGTIPSQLGKIPNVSEVDVSKNNLS 369
N I T+ L + + +S N+
Sbjct: 334 NSIV-TLK--LSTHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 7e-41
Identities = 64/352 (18%), Positives = 130/352 (36%), Gaps = 31/352 (8%)
Query: 59 TIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNL 118
I S + ++++ + E L + + + + + L + + + +
Sbjct: 18 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77
Query: 119 THLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLV 177
L+L+ Q+ + + L++ N + P ++ L+ L L N+L
Sbjct: 78 ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136
Query: 178 GPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP------ 230
LP+ + N L +L ++ NNL T L L+LS NRL +
Sbjct: 137 S-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSL 194
Query: 231 -----------TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPT 279
T+ + LD S N ++ + L L L NNL
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLTD--TAW 249
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLD 338
+ L ++L YN+L I + +L+ L +++N L ++ + L+ LD
Sbjct: 250 LLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 307
Query: 339 LSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLE 390
LSHN + + + + + + N++ + + + L S N+ +
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 4e-34
Identities = 66/344 (19%), Positives = 128/344 (37%), Gaps = 37/344 (10%)
Query: 74 NLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIG-----NLTNLTHLDLSLNQL 128
YN+ + + YD +D L N + + +
Sbjct: 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 129 SGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GN 186
+LP + + + + L L++ + + + + LY+ +N + LP V N
Sbjct: 64 R-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQN 121
Query: 187 LKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSN 246
+ L L+L RN+L+ L L +S+N L+ T T L +L LSSN
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181
Query: 247 QLSGLLPREVGNLKYLD----------------SLSLDRNNLIGPIPPTIGYLTNLTSLN 290
+L+ + + +L + + L N+ I + + LT L
Sbjct: 182 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPV--NVELTILK 238
Query: 291 LGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIP 349
L +N L L+N L + +++N L I + L +L +S+N + +
Sbjct: 239 LQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALN 294
Query: 350 SQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENNLE 390
IP + +D+S N+L + ++ + L+ N++
Sbjct: 295 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 59/309 (19%), Positives = 112/309 (36%), Gaps = 25/309 (8%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
+ L ++SYN L+ + + EL+ S+N +N + +L L+LQ
Sbjct: 189 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQ 240
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPST 159
N L + + N L +DLS N+L ++ ++ L L++ NN L +
Sbjct: 241 HNNLTDT--AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLY 296
Query: 160 LYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRL 219
+ L L L++N+L+ + + L++L L+ N++ + + + L L L
Sbjct: 297 GQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTL 352
Query: 220 SHNRLDG-PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN-------N 271
SHN D + N+ D + K D LDR +
Sbjct: 353 SHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTS 412
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNL 331
++ + G + ++N + + + + L N L +
Sbjct: 413 VVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQ 472
Query: 332 IHLRQLDLS 340
I QL
Sbjct: 473 IQQEQLLQG 481
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 5e-15
Identities = 52/374 (13%), Positives = 108/374 (28%), Gaps = 14/374 (3%)
Query: 10 LSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRD 69
++ + L ++ L +DLSYN L + ++
Sbjct: 223 INVVRGPVNVELTILKLQHNNLTD--TAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 70 LLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 129
L L +S N L ++ L + L L L N L + + L +L L N +
Sbjct: 280 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 337
Query: 130 GRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKN 189
L L +L L +N+ L ++ + + + ++ +
Sbjct: 338 -TLKL--STHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLC 392
Query: 190 LDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLS 249
+ + + + + + D I Y+T Q +
Sbjct: 393 CKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATD-TINSVQSLSHYITQQGGVPLQGN 451
Query: 250 GLLPREVGNL-KYLDSLSLDRNNLIGPIPP-TIGYLTNLTSLNLGYNQLNSSIPPELMNC 307
L EV L + L+ ++ + TNL L + L S
Sbjct: 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVF 511
Query: 308 SQLQNLAVNHNSLSGSIPSEIGNLI-HLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKN 366
+ L+ + + +E L+ + + + ++ K + + K
Sbjct: 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR 571
Query: 367 NLSGVIPKSVFRVP 380
+ R P
Sbjct: 572 QKVKQLEAKKNRNP 585
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 3e-43
Identities = 90/401 (22%), Positives = 145/401 (36%), Gaps = 70/401 (17%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL---------------E 87
L+ L S N LT +P SL+ LL N + L+ PL E
Sbjct: 90 PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 148
Query: 88 FGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFL 147
N L + + N L L +L + NQL LP E+ NL L +++
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYA 202
Query: 148 DNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPST 207
DNN+L +P L ++ N L E+ NL L ++ + N L +P
Sbjct: 203 DNNSLKK-LPD---LPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDL 255
Query: 208 IGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
L L+ + N L +P +LT+L + + LS L P NL YL++
Sbjct: 256 PPSLEALN---VRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPP----NLYYLNAS-- 305
Query: 268 DRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSE 327
+N I + +L LN+ N+L +P +L+ L + N L+ +P
Sbjct: 306 --SNEIRSLCDL---PPSLEELNVSNNKL-IELPALP---PRLERLIASFNHLA-EVPEL 355
Query: 328 IGNLIHLRQLDLSHNFINGTIPSQLGK----------------IPNVSEVDVSKNNLSGV 371
NL +QL + +N + P N+ ++ V N L
Sbjct: 356 PQNL---KQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-E 410
Query: 372 IPKSVFRVPGLKWSENNLEVENPVISENAPPPQTQHFKGNK 412
P V L+ + + E + F+ +
Sbjct: 411 FPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 1e-42
Identities = 73/346 (21%), Positives = 134/346 (38%), Gaps = 50/346 (14%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
I + + L+ + LT +P E +++ E +++ + P G +++
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 96 DLRLQGNKLDGL------------IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLV 143
RL+ +P +L L S N L+ LP+ +LK+L+
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLT-ELPELPQSLKSLL 117
Query: 144 SLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGP 203
+ L+ P L L ++ N L LP E+ N L + ++ N+L
Sbjct: 118 VDNNNLKALSDLPPL-------LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK- 167
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
+P L + +N+L+ P + NL +LT++ +N L LP +L+ +
Sbjct: 168 LPDLPPSLEFIA---AGNNQLE--ELPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIV 221
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGS 323
N L P + L LT++ N L ++P L+ L V N L+
Sbjct: 222 ---AGNNILE--ELPELQNLPFLTTIYADNNLL-KTLPDLP---PSLEALNVRDNYLT-D 271
Query: 324 IPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS 369
+P + L LD+S N + + PN+ ++ S N +
Sbjct: 272 LPELPQS---LTFLDVSENIFS-GLSE---LPPNLYYLNASSNEIR 310
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 4e-41
Identities = 80/384 (20%), Positives = 143/384 (37%), Gaps = 66/384 (17%)
Query: 35 RIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLL-------------ELNLSYNILN 81
+P E + +++ P G R++ EL L+ L+
Sbjct: 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84
Query: 82 GSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ------- 134
S+P +L+ L N L L P +L +L + +L LS P
Sbjct: 85 -SLPELPPHLESLV---ASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139
Query: 135 --------EVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGN 186
E+ N L + +DNN+L +P L + N L LP E+ N
Sbjct: 140 NNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQN 193
Query: 187 LKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSN 246
L L ++ + N+L +P L + +N L+ P + NL +LT++ +N
Sbjct: 194 LPFLTAIYADNNSLKK-LPDLPLSLESIV---AGNNILE--ELPELQNLPFLTTIYADNN 247
Query: 247 QLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN 306
L LP +L+ L+ +N + +P LT L ++ L+ P
Sbjct: 248 LLKT-LPDLPPSLEALNVR----DNYLTDLPELPQSLTFLDVSENIFSGLSELPP----- 297
Query: 307 CSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKN 366
L L + N + S+ + L +L++S+N + +P+ + + S N
Sbjct: 298 --NLYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-ELPALPP---RLERLIASFN 347
Query: 367 NLSGVIPKSVFRVPGLKWSENNLE 390
+L+ +P+ + L N L
Sbjct: 348 HLA-EVPELPQNLKQLHVEYNPLR 370
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 5e-38
Identities = 68/320 (21%), Positives = 125/320 (39%), Gaps = 45/320 (14%)
Query: 84 IPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNL---- 139
I + L + + L + P N+ + T + ++ P G
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 140 ---------KNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNL 190
+ L L+N L+ +P HL +L + N+L LP+ +LK+L
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSL 116
Query: 191 DSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSG 250
N L+ P L+ L +S+N+L P + N ++L +D+ +N L
Sbjct: 117 LVDNNNLKALSDLPPL-------LEYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLKK 167
Query: 251 LLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQL 310
LP +L+++ N L P + L LT++ N L +P ++ L
Sbjct: 168 -LPDLPPSLEFIA---AGNNQLE--ELPELQNLPFLTAIYADNNSL-KKLPDLPLS---L 217
Query: 311 QNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSG 370
+++ +N L E+ NL L + +N + T+P P++ ++V N L+
Sbjct: 218 ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTD 271
Query: 371 VIPKSVFRVPGLKWSENNLE 390
+P+ + L SEN
Sbjct: 272 -LPELPQSLTFLDVSENIFS 290
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 1e-36
Identities = 73/345 (21%), Positives = 117/345 (33%), Gaps = 57/345 (16%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
S LK++D+ N L +P SL + N L +P E NL L +
Sbjct: 150 QNSSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNNQLE-ELP-ELQNLPFLTAIYAD 203
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTL 160
N L L +L + N L LP E+ NL L +++ DNN L +P
Sbjct: 204 NNSLKKLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD-- 254
Query: 161 YHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLS 220
L L + N L LP+ +L LD + L+ P+ L L S
Sbjct: 255 -LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNAS 305
Query: 221 HNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI 280
N + + +L L++S+N+L L P L+ L + N + +P
Sbjct: 306 SNEIRS-LCDLPPSLE---ELNVSNNKLIEL-PALPPRLERLIA----SFNHLAEVPELP 356
Query: 281 GYLTNLTSLNLGYNQLNSSIPPELMN----------------CSQLQNLAVNHNSLSGSI 324
NL L++ YN L P + L+ L V N L
Sbjct: 357 Q---NLKQLHVEYNPL-REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EF 411
Query: 325 PSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS 369
P ++ L ++ + + + ++
Sbjct: 412 PDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 5e-30
Identities = 61/297 (20%), Positives = 98/297 (32%), Gaps = 47/297 (15%)
Query: 39 ETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLR 98
E L L + N L +P SL + NIL E NL L +
Sbjct: 190 ELQNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNIL--EELPELQNLPFLTTIY 243
Query: 99 LQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPS 158
N L L P +L L D L L P+ +L L + L+ +P
Sbjct: 244 ADNNLLKTL-PDLPPSLEALNVRDNYLTDL----PELPQSLTFLDVSENIFSGLS-ELPP 297
Query: 159 TLYHLN--------------QLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPI 204
LY+LN L L ++ N L+ LP L+ L + N+L +
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNHLAE-V 352
Query: 205 PSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDS 264
P L L + +N L P ++ L ++ L+ + P NLK L
Sbjct: 353 PELPQNLKQLH---VEYNPLRE-FPDIPESVEDLRM----NSHLAEV-PELPQNLKQLH- 402
Query: 265 LSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLS 321
+ N + P ++ L + ++ +L++ H+
Sbjct: 403 VE---TNPLREFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 6e-42
Identities = 73/307 (23%), Positives = 123/307 (40%), Gaps = 20/307 (6%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
L+V+ S L +P ++ D L+L N + +F NLK+L+ L L NK+
Sbjct: 33 LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 106 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165
+ P + L L L LS NQL LP+++ K L L + N +T S LNQ
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 166 LSTLYLAYNNL-VGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNR 223
+ + L N L + +K L + + N+T IP G L EL L N+
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNK 203
Query: 224 LDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYL 283
+ ++ L L L LS N +S + + N +L L L+ N L+ +P +
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADH 262
Query: 284 TNLTSLNLGYNQLNS------SIPPELMNCSQLQNLAVNHNSLS-GSIPSEI-GNLIHLR 335
+ + L N +++ P + +++ N + I +
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322
Query: 336 QLDLSHN 342
+ L +
Sbjct: 323 AVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 8e-30
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 19/239 (7%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQG 101
L +L+ L LS N+L +P + L EL + N + + F L + + L
Sbjct: 99 LVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGT 154
Query: 102 NKL--DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
N L G+ + + L+++ ++ ++ +PQ G +L L LD N +T ++
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAAS 211
Query: 160 LYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRL 219
L LN L+ L L++N++ + N +L L LN N L +P + + + L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYL 270
Query: 220 SHNRL------DGPIPPTIGNLTYLTSLDLSSNQL--SGLLPREVGNLKYLDSLSLDRN 270
+N + D P + + L SN + + P + ++ L
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 8e-24
Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 17/256 (6%)
Query: 141 NLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200
+L + + L +P L + L L N + + NLKNL +L+L N +
Sbjct: 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 201 TGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLK 260
+ P L L+ L LS N+L +P L L + N+++ + L
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKE-LPE--KMPKTLQELRVHENEITKVRKSVFNGLN 145
Query: 261 YLDSLSLDRNNL-IGPIPP-TIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHN 318
+ + L N L I + L+ + + + ++IP L L L ++ N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGN 202
Query: 319 SLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
++ + + L +L +L LS N I+ L P++ E+ ++ N L +P +
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260
Query: 378 RVPGLKW---SENNLE 390
++ NN+
Sbjct: 261 DHKYIQVVYLHNNNIS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 7e-23
Identities = 48/227 (21%), Positives = 86/227 (37%), Gaps = 21/227 (9%)
Query: 10 LSQLNFTCFPNLVTFRIWGTRFLSGRIPSET-GALSRLKVLDLSYNRLT-GTIPSEI-GS 66
L +L L R+ + L+++ V++L N L I +
Sbjct: 112 LKELPEKMPKTLQELRVHENEITK--VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
++ L + ++ + +IP G L +L L GNK+ + +S+ L NL L LS N
Sbjct: 170 MKKLSYIRIADTNIT-TIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 127 QLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL------VGP 179
+S + N +L L L+NN L +P L + +YL NN+
Sbjct: 227 SIS-AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 180 LPKEVGNLKNLDSLLLNRNNLT-GPIPSTIGFLNL--LDELRLSHNR 223
P + + L N + I + F + ++L + +
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPST-FRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 37/200 (18%), Positives = 75/200 (37%), Gaps = 15/200 (7%)
Query: 9 ELSQLNFTCFPNLVTFRIWGTRFLSGRIPSET-GALSRLKVLDLSYNRLTGTIPSEIGSL 67
++ + F ++ + S I + + +L + ++ +T TIP G
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLP 191
Query: 68 RDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
L EL+L N + + L +L L L N + + S+ N +L L L+ N
Sbjct: 192 PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTG------PIPSTLYHLNQLSTLYLAYNNL-VGP 179
+L ++P + + K + ++L NNN++ P S + L N +
Sbjct: 251 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309
Query: 180 LPKEV-GNLKNLDSLLLNRN 198
+ + ++ L
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 158 bits (400), Expect = 7e-41
Identities = 77/353 (21%), Positives = 122/353 (34%), Gaps = 26/353 (7%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQG 101
L+ + L LS+N + S L L L L +I E F NL +L L L
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE--VGNLKNLVSLFLDNNNLTG-PIPS 158
+K+ L P + L +L L L LS + ++ NLK L L L N + +
Sbjct: 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142
Query: 159 TLYHLNQLSTLYLAYNNLVGPLPKEVGNL--KNLDSLLLNRNNLTGPIPSTIGFLN---- 212
+ LN L ++ + N + E+ L K L L N+L + G
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 213 --LLDELRLSHNRLDGPIPPTIGN------------LTYLTSLDLSSNQLSGLLPREVGN 258
+L+ L +S N I N ++ + +
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 259 LK--YLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVN 316
L + L L + L +L LNL YN++N LQ L ++
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 317 HNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS 369
+N L S L + +DL N I + + +D+ N L+
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 5e-40
Identities = 80/356 (22%), Positives = 135/356 (37%), Gaps = 23/356 (6%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRD--LLELNLSYNILNGSIPLEFG 89
+S + ++ + + L + L+LS+ + F
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287
Query: 90 NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDN 149
LKDL L L NK++ + + L NL L+LS N L L + + L
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 150 NNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIG 209
N++ T L +L TL L N L + + ++ + L+ N L +P
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVT-LPKINL 401
Query: 210 FLNLLDELRLSHNRLDG-PIPPTIGNLTYLTSLDLSSNQLSGLLPREV-GNLKYLDSLSL 267
NL+ LS NRL+ I + + +L L L+ N+ S + L+ L L
Sbjct: 402 TANLIH---LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
Query: 268 DRNNLIGPIPPTI-----GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322
N L + L++L L L +N LNS P + + L+ L++N N L+
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT- 517
Query: 323 SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ +L LD+S N + P ++S +D++ N S F
Sbjct: 518 VLSHND-LPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFI 569
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-33
Identities = 78/312 (25%), Positives = 129/312 (41%), Gaps = 24/312 (7%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L LKVL+L+YN++ L +L LNLSYN+L F L + + LQ N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
+ + + L L LDL N L+ + + ++ +FL N L TL
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-----TLPK 398
Query: 163 LN-QLSTLYLAYNNLVG-PLPKEVGNLKNLDSLLLNRNNLTG-PIPSTIGFLNLLDELRL 219
+N + ++L+ N L + + + +L L+LN+N + T L++L L
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
Query: 220 SHNRLDGPIPPTI-----GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG 274
N L + L++L L L+ N L+ L P +L L LSL+ N L
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518
Query: 275 PIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP-SEIGNLIH 333
+ NL L++ NQL + P ++ L L + HN S N ++
Sbjct: 519 -LSHND-LPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTFINWLN 573
Query: 334 LRQLDLSHNFIN 345
+ ++ +
Sbjct: 574 HTNVTIAGPPAD 585
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 1e-40
Identities = 59/355 (16%), Positives = 127/355 (35%), Gaps = 25/355 (7%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
+ V D T +IPS + + L+LS+N + + +L L L+
Sbjct: 3 SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTG-PIPST 159
++++ + + +L +L HLDLS N LS L G L +L L L N + S
Sbjct: 60 SRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Query: 160 LYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELR 218
+L L TL + + + L +L+ L + +L ++ + + L
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178
Query: 219 LSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL------ 272
L + + L+ + L+L L+ + + +
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238
Query: 273 ----IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPEL--------MNCSQLQNLAVNHNSL 320
+ + I L+ + + N L P E + ++ L + L
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298
Query: 321 SGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKS 375
+ + L ++++ + ++ + S + ++ +D+S+N + K+
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 5e-40
Identities = 65/357 (18%), Positives = 121/357 (33%), Gaps = 18/357 (5%)
Query: 43 LSRLKVLDLSYNRLTG-TIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQ 100
LS LK L+L N + S +L +L L + I F L L +L ++
Sbjct: 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTL 160
L S+ ++ ++ HL L L++ + L L ++ L L + NL S L
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216
Query: 161 YHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLS 220
S + + L L +L + + L +
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFN 270
Query: 221 HNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI 280
+ D + L + L L L+ + ++++ + +
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330
Query: 281 GYLTNLTSLNLGYNQLNSSIPPE---LMNCSQLQNLAVNHNSLSGSIPSEIG---NLIHL 334
+L +L L+L N + LQ L ++ N L S+ L +L
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNL 389
Query: 335 RQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF-RVPGLKWSENNLE 390
LD+S N + +P + +++S + V+ + + L S NNL+
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLD 444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 1e-35
Identities = 67/359 (18%), Positives = 124/359 (34%), Gaps = 34/359 (9%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L+ L L++ L + S+RD+ L L + + + L + L L+
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLT--------- 153
L S + + + + S + L L+ L+ + +
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266
Query: 154 ---------GPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPI 204
+ L++ L L L+ + + + + +
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326
Query: 205 PSTIGFLNLLDELRLSHNRLDGPIPPT---IGNLTYLTSLDLSSNQLSGLLPREVGNLKY 261
S L L+ L LS N + G L +L LS N L + + L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM-QKTGEILLT 385
Query: 262 LDSL-SLD-RNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNS 319
L +L SLD N P+P + + + LNL + + + L+ L V++N+
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI-RVVKTCIP--QTLEVLDVSNNN 442
Query: 320 LSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR 378
L S L L++L +S N + T+P P + + +S+N L +P +F
Sbjct: 443 LD-SFSL---FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK-SVPDGIFD 494
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-32
Identities = 61/323 (18%), Positives = 106/323 (32%), Gaps = 33/323 (10%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYD------ 96
LS ++ L+L L S + + + F L L
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 97 ----LRLQGNKLDGLIPSSIG--------NLTNLTHLDLSLNQLSGRLPQEVGNLKNLVS 144
N L PS + L + L L L+ +
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314
Query: 145 LFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL---VGPLPKEVGNLKNLDSLLLNRNNLT 201
+ ++N+ + S HL L L L+ N + G +L +L+L++N+L
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374
Query: 202 --GPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNL 259
+ L L L +S N P+P + + L+LSS + + L
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL 433
Query: 260 KYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNS 319
+ LD +S NN + +L L L + N+L ++P L + ++ N
Sbjct: 434 EVLD-VS---NNNLDSFSL---FLPRLQELYISRNKL-KTLPDA-SLFPVLLVMKISRNQ 484
Query: 320 LSGSIPSEIGNLIHLRQLDLSHN 342
L L L+++ L N
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTN 507
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-27
Identities = 57/299 (19%), Positives = 106/299 (35%), Gaps = 47/299 (15%)
Query: 35 RIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRD--------LLELNLSYNILNGSIPL 86
++ LS ++ D + N L PSE + + + L++ L +
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304
Query: 87 EFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE---VGNLKNLV 143
+ L+ + + ++ +K+ + S +L +L LDLS N + + G +L
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364
Query: 144 SLFLDNNNLT--GPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT 201
+L L N+L L L L++L ++ N P+P + + L L+ +
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR 423
Query: 202 GPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKY 261
+ + L+ L +S+N LD L L L +S N+L L
Sbjct: 424 V-VKT--CIPQTLEVLDVSNNNLDS-FSL---FLPRLQELYISRNKLKTL---------- 466
Query: 262 LDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSL 320
P L + + NQL S + LQ + ++ N
Sbjct: 467 ----------------PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-26
Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 15/236 (6%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
++ L + L + + L + + + + + +LK L L L N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344
Query: 103 KLDGLI---PSSIGNLTNLTHLDLSLNQLS--GRLPQEVGNLKNLVSLFLDNNNLTGPIP 157
+ + G +L L LS N L + + + LKNL SL + N P+P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403
Query: 158 STLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDEL 217
+ ++ L L+ + + + L+ L ++ NNL FL L EL
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRV-VKT--CIPQTLEVLDVSNNNLDS-FSL---FLPRLQEL 456
Query: 218 RLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273
+S N+L +P L + +S NQL + L L + L N
Sbjct: 457 YISRNKLKT-LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGS 323
+ IP + + SL+L +N++ +L C+ LQ L + + ++
Sbjct: 9 VCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65
Query: 324 IPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR 378
+L L LDLS N ++ S G + ++ +++ N + S+F
Sbjct: 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 286 LTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
+ +SIP L + +++L ++ N ++ ++ +L+ L L + IN
Sbjct: 7 SGVCDGRSRSF-TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63
Query: 346 GTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ ++ +D+S N+LS + S F
Sbjct: 64 TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFG 95
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 1e-40
Identities = 65/308 (21%), Positives = 116/308 (37%), Gaps = 23/308 (7%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
L+V+ S L +P EI D L+L N ++ +F L+ LY L L NK+
Sbjct: 35 LRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 106 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165
+ + L L L +S N L +P + +LV L + +N + L
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148
Query: 166 LSTLYLAYNNL-VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRL 224
++ + + N L + L+ L ++ LTG IP L+EL L HN++
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK--DLPETLNELHLDHNKI 205
Query: 225 DGPIPP-TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYL 283
I + + L L L NQ+ + + L L L LD N L +P + L
Sbjct: 206 QA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDL 263
Query: 284 TNLTSLNLGYNQLNSSIPPE-------LMNCSQLQNLAVNHNSLS-GSIPSEI-GNLIHL 334
L + L N + + + + + +++ +N + + +
Sbjct: 264 KLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322
Query: 335 RQLDLSHN 342
+ +
Sbjct: 323 LAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 9e-31
Identities = 60/263 (22%), Positives = 104/263 (39%), Gaps = 18/263 (6%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L L L L N+++ LR L +L +S N L IP L +LR+ N
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDN 133
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQL-SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
++ + L N+ +++ N L + + L L + LTG IP L
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL- 191
Query: 162 HLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLS 220
L+ L+L +N + + E L L L N + ++ FL L EL L
Sbjct: 192 -PETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249
Query: 221 HNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLP------REVGNLKYLDSLSLDRNNL-I 273
+N+L +P + +L L + L +N ++ + Y + +SL N +
Sbjct: 250 NNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308
Query: 274 GPIPP-TIGYLTNLTSLNLGYNQ 295
+ P T +T+ ++ G +
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 4e-29
Identities = 73/295 (24%), Positives = 121/295 (41%), Gaps = 24/295 (8%)
Query: 117 NLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176
+L + S L +P+E+ + L L NN+++ L L L L N +
Sbjct: 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 177 VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP-TIGNL 235
K L+ L L +++N+L IP + L ELR+ NR+ +P L
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVE-IPP--NLPSSLVELRIHDNRIRK-VPKGVFSGL 146
Query: 236 TYLTSLDLSSNQL--SGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGY 293
+ +++ N L SG P LK L+ L + L G IP L L+L +
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPK--DLPETLNELHLDH 202
Query: 294 NQLNSSIPPE-LMNCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQ 351
N++ +I E L+ S+L L + HN + I + L LR+L L +N ++ +P+
Sbjct: 203 NKI-QAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAG 259
Query: 352 LGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEV----ENPVISENAPP 402
L + + V + NN++ + + F G NPV P
Sbjct: 260 LPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 19/220 (8%)
Query: 40 TGALSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYN-ILNGSIPLE-FGNLKDLYD 96
S L L + NR+ +P + LR++ + + N + N F LK L
Sbjct: 119 PNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNY 176
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGP 155
LR+ KL G+ L L L N++ + E L L L +N +
Sbjct: 177 LRISEAKLTGIPK---DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 156 IPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT----GPIPSTIGFL 211
+L L L L+L N L +P + +LK L + L+ NN+T +
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291
Query: 212 NL--LDELRLSHNRLD-GPIPP-TIGNLTYLTSLDLSSNQ 247
+ + L +N + + P T +T ++ + +
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-19
Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 14/199 (7%)
Query: 9 ELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLR 68
++ + F+ N+ + G + +L L +S +LT IP
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPE 193
Query: 69 DLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQ 127
L EL+L +N + +I LE LY L L N++ + S+ L L L L N+
Sbjct: 194 TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 128 LSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLN------QLSTLYLAYNNL-VGPL 180
LS R+P + +LK L ++L NN+T + + + + L N + +
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311
Query: 181 PKEV-GNLKNLDSLLLNRN 198
+ + ++
Sbjct: 312 QPATFRCVTDRLAIQFGNY 330
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 8e-40
Identities = 80/385 (20%), Positives = 133/385 (34%), Gaps = 45/385 (11%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
K LDLS+N L S +L L+LS + + +L L L L GN +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 106 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLT-GPIPSTLYHLN 164
L + L++L L L+ +G+LK L L + +N + +P +L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 165 QLSTLYLAYNNLVGPLPKEVGNLKNLD----SLLLNRNNLTGPIPSTIGFLNLLDELRLS 220
L L L+ N + ++ L + SL L+ N + I L +L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208
Query: 221 HNRLDGPIPPT-IGNLTYLTSLDL------SSNQLSGLLPREVGNLKYLDSLSLDRNNL- 272
+N + T I L L L + L + L L L
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 273 --IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCS--------------------QL 310
+ I LTN++S +L + + N L
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Query: 311 QNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN--GTIPSQLGKIPNVSEVDVSKNNL 368
+ L N + SE+ +L L LDLS N ++ G ++ +D+S N +
Sbjct: 328 KRLTFTSNKGG-NAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 369 SGVIPKSVFRVPGLKW---SENNLE 390
+ + + L+ +NL+
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNLK 409
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 4e-39
Identities = 66/348 (18%), Positives = 111/348 (31%), Gaps = 22/348 (6%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSE-IGSLRDLLELNLSYNILNGSIPLE------F 88
I RL L L N + + I L L L LE
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251
Query: 89 GNLKDLYDLRLQGNKLDGL---IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSL 145
L +L + LD I LTN++ L + R+ N L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHL 309
Query: 146 FLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIP 205
L N P+ L L L N + +L +L+ L L+RN L+
Sbjct: 310 ELVNCKFGQ-FPTL--KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGC 364
Query: 206 STIGFLNL--LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV-GNLKYL 262
+ L L LS N + + L L LD + L + V +L+ L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 263 DSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLS 321
L + + L++L L + N + P+ L L ++ L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 322 GSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS 369
P+ +L L+ L+++ N + ++ ++ ++ + N
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-35
Identities = 73/351 (20%), Positives = 118/351 (33%), Gaps = 29/351 (8%)
Query: 10 LSQLNFTCF--PNLVTFRIWGTRFLSGRIPSETGALSRLKVLDL------SYNRLTGTIP 61
++ + F L + + + L+ L+V L + L
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248
Query: 62 SEIGSLRDLLELNLSYNILNGS---IPLEFGNLKDLYDLRLQGNKLDGLIPSSI-GNLTN 117
S + L +L L+ I F L ++ L ++ + S +
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308
Query: 118 LTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL- 176
L ++ Q LK+L L +N L L L L+ N L
Sbjct: 309 LELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLS 360
Query: 177 -VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI-GN 234
G + +L L L+ N + + S L L+ L H+ L ++ +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 235 LTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGY 293
L L LD+S L L+ L + N+ P I L NLT L+L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 294 NQLNSSIPPE-LMNCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHN 342
QL + P + S LQ L + N L S+P I L L+++ L N
Sbjct: 480 CQL-EQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 2e-34
Identities = 71/300 (23%), Positives = 105/300 (35%), Gaps = 12/300 (4%)
Query: 2 DNNGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIP 61
+ N + S L C + FR+ + I L+ + L + +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK 298
Query: 62 SEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHL 121
L L L+ +LK L NK +L +L L
Sbjct: 299 DFSY-NFGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSEV--DLPSLEFL 352
Query: 122 DLSLNQLS--GRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP 179
DLS N LS G Q +L L L N + + S L QL L ++NL
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 180 LPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI-GNLTY 237
V +L+NL L ++ + L+ L+ L+++ N P I L
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 238 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLN 297
LT LDLS QL L P +L L L++ N L LT+L + L N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-32
Identities = 67/341 (19%), Positives = 120/341 (35%), Gaps = 26/341 (7%)
Query: 1 MDNNGNAAELSQLNFTCFPNLVTFRIWGTRFLSGR--IPSETGALSRLKVLDLSYNRLTG 58
+ NN ++ + + L R+ F + + AL L L + RL
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 59 ------TIPSEIGSLRDLLELNLSYNILNGSIPLEF-GNLKDLYDLRLQGNKLDGLIPSS 111
I L ++ +L + + + L + + + L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---- 322
Query: 112 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLT--GPIPSTLYHLNQLSTL 169
L +L L + N+ + +L +L L L N L+ G + + L L
Sbjct: 323 --KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 170 YLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNL--LDELRLSHNRLDGP 227
L++N ++ + L+ L+ L +NL + FL+L L L +SH
Sbjct: 379 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDRNNLIGPIPPTIGYLTNL 286
L+ L L ++ N ++ L+ L L L + L P L++L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 287 TSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLSGSIPS 326
LN+ NQL S+P + LQ + ++ N S P
Sbjct: 497 QVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 9e-38
Identities = 75/374 (20%), Positives = 127/374 (33%), Gaps = 42/374 (11%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDL 94
+P+ +DLS N + + L+DL L + I F L L
Sbjct: 28 LPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL-SGRLPQEV-GNLKNLVSLFLDNNNL 152
L+L N+ L + L NL L L+ L L L +L L L +NN+
Sbjct: 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141
Query: 153 TGPIPSTL-YHLNQLSTLYLAYNNL----------VGPLPKEVGNLKNLDSLLLNRNNLT 201
P++ ++ + L L +N + + L ++ +N L
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 202 GPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSL-------------DLSSNQL 248
+ L LS N + + T +
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 249 SGLLPREVGNLKYLDSLSLD-RNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPE-LM 305
L+ + D + I + ++ + T+L L L N++ + I
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFW 320
Query: 306 NCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQL-GKIPNVSEVDV 363
+ L L ++ N L SI S + NL L LDLS+N I + Q +PN+ E+ +
Sbjct: 321 GLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELAL 378
Query: 364 SKNNLSGVIPKSVF 377
N L +P +F
Sbjct: 379 DTNQLK-SVPDGIF 391
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 73/315 (23%), Positives = 115/315 (36%), Gaps = 37/315 (11%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSET-GALSRLKVLDLSYNRLTGTIPSEI-GSLRDLLE 72
F NL + + L+ L++L L N + P+ ++R
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158
Query: 73 LNLSYNILNGSIPLEFGNL--KDLYDLRLQGNKLDGLIPSSIG--------NLTNLTHLD 122
L+L++N + + N K LRL L + +G T++T LD
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218
Query: 123 LSLNQLSGRLPQEVGNLKNLVSL-------------FLDNNNLTGPIPSTLYHL--NQLS 167
LS N + + + + + N P T L + +
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278
Query: 168 TLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNL--LDELRLSHNRL 224
T L+ + + L K V + +L+ L L +N + I F L L +L LS N L
Sbjct: 279 TCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEIN-KIDDNA-FWGLTHLLKLNLSQNFL 335
Query: 225 DGPIPPTI-GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GY 282
I + NL L LDLS N + L + L L L+LD N L +P I
Sbjct: 336 GS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDR 393
Query: 283 LTNLTSLNLGYNQLN 297
LT+L + L N +
Sbjct: 394 LTSLQKIWLHTNPWD 408
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-36
Identities = 73/327 (22%), Positives = 121/327 (37%), Gaps = 36/327 (11%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L+ L LD + +T + I L L +L + N + L+ +L L N
Sbjct: 41 LATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSN 95
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
KL L + LT LT+L+ N+L+ +V L L N LT + H
Sbjct: 96 KLTNL---DVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTEI---DVSH 146
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHN 222
QL+ L N + L V L +L + N +T + LL+ L N
Sbjct: 147 NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTN 201
Query: 223 RLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGY 282
+ + LT LD SSN+L+ + +V L L N L + +
Sbjct: 202 NITK---LDLNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLT-ELDVST-- 252
Query: 283 LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
L+ LT+L+ L +L + +QL + ++ + L LD
Sbjct: 253 LSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAA 307
Query: 343 FINGTIPSQLGKIPNVSEVDVSKNNLS 369
I + L + P + + ++ L+
Sbjct: 308 GIT-ELD--LSQNPKLVYLYLNNTELT 331
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 6e-34
Identities = 67/333 (20%), Positives = 116/333 (34%), Gaps = 36/333 (10%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
+ L L N+LT + + L L LN N L L+ L L
Sbjct: 82 SQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCA 135
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTL 160
N L + + + T LT LD LN+ +L V L +L N +T +
Sbjct: 136 RNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDV 187
Query: 161 YHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLS 220
L+ L NN+ ++ L L + N LT I + L L S
Sbjct: 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241
Query: 221 HNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI 280
N L + + L+ LT+L L + ++ + L + I + +
Sbjct: 242 VNPLT-ELD--VSTLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIKELD--V 293
Query: 281 GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLS 340
+ T L L+ + +L +L L +N+ L+ + + + L+ L
Sbjct: 294 THNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCV 347
Query: 341 HNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373
+ I S +GKIP ++ ++ +
Sbjct: 348 NAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPK 378
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 6e-32
Identities = 67/374 (17%), Positives = 116/374 (31%), Gaps = 41/374 (10%)
Query: 9 ELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLR 68
+L+ L+ T L + + L L+ + N LT I +
Sbjct: 96 KLTNLDVTPLTKLTYLNCDTNKLTK----LDVSQNPLLTYLNCARNTLT-EID--VSHNT 148
Query: 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL 128
L EL+ N L+ L L NK+ L + L L+ N +
Sbjct: 149 QLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNI 203
Query: 129 SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLK 188
+ +L + L L +N LT I + L QL+ + N L L V L
Sbjct: 204 T-KLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL-TELD--VSTLS 254
Query: 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQL 248
L +L + +L I + + + + T L LD + +
Sbjct: 255 KLTTLHCIQTDLL-----EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309
Query: 249 SGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCS 308
+ L ++ L L L+ L + + + T L SL+ + +
Sbjct: 310 TEL---DLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQDF--SSVGKIP 361
Query: 309 QLQNLAVNHNSLSGSIPSEIGNL-----IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDV 363
L N + N + LD N + I G + + + +
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM--NIEPGDGGVYDQATNTI 419
Query: 364 SKNNLSGVIPKSVF 377
+ NLS P +
Sbjct: 420 TWENLSTDNPAVTY 433
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 4e-28
Identities = 60/302 (19%), Positives = 101/302 (33%), Gaps = 34/302 (11%)
Query: 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
+ + + L L L + + + + I LT LT L + N
Sbjct: 20 FASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN 74
Query: 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGN 186
++ ++ NL L D+N LT + + L +L+ L N L +V
Sbjct: 75 NITT---LDLSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLT---KLDVSQ 125
Query: 187 LKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSN 246
L L RN LT I + L + + T LT+LD S N
Sbjct: 126 NPLLTYLNCARNTLT-----EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180
Query: 247 QLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN 306
+++ L +V K L+ L+ D NN+ + LT L+ N+L ++
Sbjct: 181 KITEL---DVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTEI---DVTP 231
Query: 307 CSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKN 366
+QL + N L+ + + L L L + I L +
Sbjct: 232 LTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGC 285
Query: 367 NL 368
Sbjct: 286 RK 287
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 59/261 (22%), Positives = 92/261 (35%), Gaps = 13/261 (4%)
Query: 16 TCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNL 75
+C +P G S + L+L N + L L L L
Sbjct: 51 SCSNQFSKVVCTRRGLSE--VPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL 106
Query: 76 SYNILNGSIPLE-FGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 134
N + I + F L L L L N L + + L+ L L L N + +P
Sbjct: 107 GRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS 164
Query: 135 EV-GNLKNLVSLFLDNNN-LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDS 192
+ +L+ L L L L L L L N+ +P + L L+
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEE 222
Query: 193 LLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP-TIGNLTYLTSLDLSSNQLSGL 251
L ++ N+ P + L+ L +L + ++++ I L L L+L+ N LS L
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSL 281
Query: 252 LPREVGNLKYLDSLSLDRNNL 272
L+YL L L N
Sbjct: 282 PHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 5e-33
Identities = 64/302 (21%), Positives = 101/302 (33%), Gaps = 58/302 (19%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
++ + + L+ +P I + LNL N + F +L L L+L N
Sbjct: 54 NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYH 162
+ + + L +L L+L N L+ +P L L L+L NN +
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169
Query: 163 LNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSH 221
+ L L L + + + L NL L L N+
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------------------ 211
Query: 222 NRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP-TI 280
P + L L L++S N + P L L L + N+ + I
Sbjct: 212 --------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM-NSQVSLIERNAF 262
Query: 281 GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLS 340
L +L LNL +N L SS+P +L L +L +L L
Sbjct: 263 DGLASLVELNLAHNNL-SSLPHDLFT-----------------------PLRYLVELHLH 298
Query: 341 HN 342
HN
Sbjct: 299 HN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-30
Identities = 52/240 (21%), Positives = 90/240 (37%), Gaps = 11/240 (4%)
Query: 141 NLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200
+ L+ +P + L L NN+ +L +L+ L L RN++
Sbjct: 55 QFSKVVCTRRGLSE-VPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 201 TGPIPSTIGFLNLLDELRLSHNRLDGPIPP-TIGNLTYLTSLDLSSNQLSGLLPREVGNL 259
L L+ L L N L IP L+ L L L +N + + +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170
Query: 260 KYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHN 318
L L L + I L NL LNLG + P L L+ L ++ N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGN 228
Query: 319 SLSGSIPSE-IGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
I L L++L + ++ ++ + + ++ E++++ NNLS +P +F
Sbjct: 229 HFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF 286
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 2e-18
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 8/147 (5%)
Query: 35 RIPSET-GALSRLKVLDLS-YNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLEFGNL 91
IPS + L LDL +L I L +L LNL + +P L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPL 217
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNN 150
L +L + GN + P S L++L L + +Q+S + + L +LV L L +N
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHN 276
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYNNLV 177
NL+ L L L+L +N
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-35
Identities = 60/243 (24%), Positives = 95/243 (39%), Gaps = 8/243 (3%)
Query: 35 RIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILN--GSIPLEFGNLK 92
+P+ G S L+L N+L L L +L+LS N L+ G
Sbjct: 21 SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 93 DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNN 151
L L L N + + S+ L L HLD + L V +L+NL+ L + + +
Sbjct: 79 SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGF 210
L+ L L +A N+ ++ L+NL L L++ L P+
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNL-KYLDSLSLDR 269
L+ L L +SHN L L LD S N + +E+ + L L+L +
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
Query: 270 NNL 272
N+
Sbjct: 258 NDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 5e-34
Identities = 61/259 (23%), Positives = 94/259 (36%), Gaps = 15/259 (5%)
Query: 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD- 105
+ + LT ++P+ I L L N L F L L L L N L
Sbjct: 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 106 -GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG-PIPSTLYHL 163
G S T+L +LDLS N + + L+ L L ++NL S L
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 164 NQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNL--LDELRLS 220
L L +++ + + L +L+ L + N+ I F L L L LS
Sbjct: 126 RNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLS 183
Query: 221 HNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI 280
+L+ P +L+ L L++S N L L L L N+++
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQE 242
Query: 281 --GYLTNLTSLNLGYNQLN 297
+ ++L LNL N
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 7e-34
Identities = 71/277 (25%), Positives = 102/277 (36%), Gaps = 35/277 (12%)
Query: 72 ELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR 131
E+ + L S+P L L+ NKL L LT LT L LS N LS +
Sbjct: 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 132 --LPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLK 188
Q +L L L N + + S L QL L ++NL V +L+
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126
Query: 189 NLDSLLLNRNNLTGPIPSTIGFLNL--LDELRLSHNRLDGPIPPTI-GNLTYLTSLDLSS 245
NL L ++ + + I F L L+ L+++ N P I L LT LDLS
Sbjct: 127 NLIYLDISHTHTRV-AFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 246 NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305
QL L P +L L L++ NN L +L L+ N + + +
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQE- 242
Query: 306 NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
LQ+ L L+L+ N
Sbjct: 243 ----LQHF-----------------PSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 56/266 (21%), Positives = 92/266 (34%), Gaps = 33/266 (12%)
Query: 117 NLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176
+ T + + L+ +P + + L L++N L L QL+ L L+ N L
Sbjct: 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 177 --VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDG-PIPPTIG 233
G + +L L L+ N + + S L L+ L H+ L
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123
Query: 234 NLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLG 292
+L L LD+S L L+ L + N+ P I L NLT L+L
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 352
QL + P N +L L+ L++SHN
Sbjct: 184 QCQL-EQLSPTAFN-----------------------SLSSLQVLNMSHNNFFSLDTFPY 219
Query: 353 GKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ ++ +D S N++ K +
Sbjct: 220 KCLNSLQVLDYSLNHIM-TSKKQELQ 244
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 37/255 (14%)
Query: 144 SLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGP 203
+ ++ LT +P+ + + + L L N L L L L L+ N L+
Sbjct: 11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 204 IPSTIGFLNL--LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKY 261
+ L L LS N + + L L LD + L +
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-------- 118
Query: 262 LDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSL 320
L NL L++ + S L+ L + NS
Sbjct: 119 ---------------FSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 321 SGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR- 378
+ +I L +L LDLS + P+ + ++ +++S NN + ++
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKC 221
Query: 379 VPGLKW---SENNLE 390
+ L+ S N++
Sbjct: 222 LNSLQVLDYSLNHIM 236
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 27/140 (19%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELN 74
F +L ++ G F +P L L LDLS +L +
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA---------- 194
Query: 75 LSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 134
F +L L L + N L L +L LD SLN + +
Sbjct: 195 -------------FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKK 240
Query: 135 EV--GNLKNLVSLFLDNNNL 152
+ +L L L N+
Sbjct: 241 QELQHFPSSLAFLNLTQNDF 260
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 8e-35
Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 13/262 (4%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELN 74
+C +P G + ++L+L N++ + LR L L
Sbjct: 39 CSCSNQFSKVICVRKNLRE--VPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQ 94
Query: 75 LSYNILNGSIPLE-FGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 133
LS N + +I + F L +L L L N+L + + L+ L L L N + +P
Sbjct: 95 LSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIP 152
Query: 134 QEV-GNLKNLVSLFLDNNNLTGPIPS-TLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLD 191
+ +L L L I L+ L L LA NL +P + L LD
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLD 210
Query: 192 SLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP-TIGNLTYLTSLDLSSNQLSG 250
L L+ N+L+ P + L L +L + +++ I NL L ++L+ N L+
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTL 269
Query: 251 LLPREVGNLKYLDSLSLDRNNL 272
L L +L+ + L N
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 4e-30
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 11/240 (4%)
Query: 141 NLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200
+ NL +P + L L N + +L++L+ L L+RN++
Sbjct: 44 QFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 201 TGPIPSTIGFLNLLDELRLSHNRLDGPIPP-TIGNLTYLTSLDLSSNQLSGLLPREVGNL 259
L L+ L L NRL IP L+ L L L +N + + +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159
Query: 260 KYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHN 318
L L L + I L+NL LNL L P L +L L ++ N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGN 217
Query: 319 SLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
LS +I L+HL++L + + I + + ++ E++++ NNL+ ++P +F
Sbjct: 218 HLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 4e-30
Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 12/256 (4%)
Query: 117 NLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176
+ + L +P + N L L N + ++ HL L L L+ N++
Sbjct: 44 QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 177 VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP-TIGNL 235
L NL++L L N LT +L+ L EL L +N ++ IP +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRI 159
Query: 236 TYLTSLDLSS-NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYN 294
L LDL +LS + L L L+L NL P + L L L+L N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGN 217
Query: 295 QLNSSIPPE-LMNCSQLQNLAVNHNSLSGSIPSE-IGNLIHLRQLDLSHNFINGTIPSQL 352
L S+I P LQ L + + + I NL L +++L+HN +
Sbjct: 218 HL-SAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275
Query: 353 GKIPNVSEVDVSKNNL 368
+ ++ + + N
Sbjct: 276 TPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 6e-18
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 35 RIPSET-GALSRLKVLDLS-YNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLEFGNL 91
IPS + L+ LDL RL+ I L +L LNL+ L IP L
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPL 206
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNN 150
L +L L GN L + P S L +L L + +Q+ + + NL++LV + L +N
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHN 265
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYNNLV 177
NLT L+ L ++L +N
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHNPWN 292
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 1e-34
Identities = 67/313 (21%), Positives = 120/313 (38%), Gaps = 30/313 (9%)
Query: 49 LDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIP-LEFGNLKDLYDLRLQGNKLDGL 107
+ YN ++GT + + L N ++ L+ + +L+L L L
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLS 167
P ++ +T L+++ N L LP+ +L+ L +N L+ +P L
Sbjct: 75 -PDNLP--PQITVLEITQNALI-SLPELPASLEYLD---ACDNRLST-LPELP---ASLK 123
Query: 168 TLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGP 227
L + N L LP+ L+ ++ + N LT +P L+ L + +N+L
Sbjct: 124 HLDVDNNQLTM-LPELPALLEYIN---ADNNQLTM-LPELPT---SLEVLSVRNNQL-TF 174
Query: 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD---RNNLIGPIPPTIGYLT 284
+P +L +LD+S+N L L P + + + R N I IP I L
Sbjct: 175 LPELPESLE---ALDVSTNLLESL-PAVPVRNHHSEETEIFFRCRENRITHIPENILSLD 230
Query: 285 NLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFI 344
++ L N L+S I L + + S S + N +H D +
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWF 288
Query: 345 NGTIPSQLGKIPN 357
S + +I +
Sbjct: 289 PENKQSDVSQIWH 301
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 3e-34
Identities = 58/288 (20%), Positives = 105/288 (36%), Gaps = 34/288 (11%)
Query: 71 LELNLSYNILNG---SIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQ 127
L N YN ++G + + N+ L+ + + + L L+
Sbjct: 13 LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLN 70
Query: 128 LSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNL 187
LS LP + + L + N L +P L L N L LP+ +L
Sbjct: 71 LS-SLPDNLP--PQITVLEITQNALI-SLPEL---PASLEYLDACDNRLST-LPELPASL 122
Query: 188 KNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQ 247
K+LD ++ N LT +P LL+ + +N+L +P + L L + +NQ
Sbjct: 123 KHLD---VDNNQLTM-LPELPA---LLEYINADNNQLTM-LPELPTS---LEVLSVRNNQ 171
Query: 248 LSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTS----LNLGYNQLNSSIPPE 303
L+ LP +L+ LD +S NL+ +P + N++ + IP
Sbjct: 172 LTF-LPELPESLEALD-VS---TNLLESLPAVPVRNHHSEETEIFFRCRENRI-THIPEN 225
Query: 304 LMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQ 351
+++ + + N LS I + + + + Q
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 1e-33
Identities = 65/307 (21%), Positives = 110/307 (35%), Gaps = 35/307 (11%)
Query: 108 IPSSIGNLTNLTHLDLSLNQLSG---RLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLN 164
I I N +L+ + N +SG + + N + L +N
Sbjct: 3 IMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--IN 59
Query: 165 QLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRL 224
Q S L L NL LP + + L + +N L +P L + L NRL
Sbjct: 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACDNRL 112
Query: 225 DGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLT 284
+P +L +L D+ +NQL+ +LP L+Y++ NN + +P T
Sbjct: 113 ST-LPELPASLKHL---DVDNNQLT-MLPELPALLEYIN-AD---NNQLTMLPELP---T 160
Query: 285 NLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ----LDLS 340
+L L++ NQL +P L+ L V+ N L S+P+ H +
Sbjct: 161 SLEVLSVRNNQLTF-LPELP---ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215
Query: 341 HNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVENPVISENA 400
N I IP + + + + N LS I +S+ + + +
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274
Query: 401 PPPQTQH 407
+
Sbjct: 275 TLHRPLA 281
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 5e-33
Identities = 61/294 (20%), Positives = 109/294 (37%), Gaps = 35/294 (11%)
Query: 83 SIPLEFGNLKDLYDLRLQGNKLDGL---IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNL 139
SI L N L N + G S+ + N+ L + +
Sbjct: 2 SIMLPINNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLI 58
Query: 140 KNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN 199
L L+ NL+ +P L Q++ L + N L+ LP+ +L+ LD N
Sbjct: 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNR 111
Query: 200 LTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNL 259
L+ +P L L + +N+L +P L Y+ + +NQL+ +LP +L
Sbjct: 112 LST-LPELPASLK---HLDVDNNQLTM-LPELPALLEYI---NADNNQLT-MLPELPTSL 162
Query: 260 KYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQN----LAV 315
+ L + NN + +P +L +L++ N L S+P + +
Sbjct: 163 EVLS-VR---NNQLTFLPELPE---SLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRC 214
Query: 316 NHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS 369
N ++ IP I +L + L N ++ I L + + + S
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 9e-32
Identities = 56/266 (21%), Positives = 100/266 (37%), Gaps = 31/266 (11%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
+++ L L+ L+ ++P + + L ++ N L S+P +L+ L N
Sbjct: 58 INQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL-ISLPELPASLEYLD---ACDN 110
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
+L L P +L HLD+ NQL+ LP+ L+ + DNN LT +P
Sbjct: 111 RLSTL-PELPA---SLKHLDVDNNQLT-MLPELPALLE---YINADNNQLTM-LPEL--- 158
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDE----LR 218
L L + N L LP+ +L+ LD ++ N L +P+ + +E R
Sbjct: 159 PTSLEVLSVRNNQLTF-LPELPESLEALD---VSTNLLES-LPAVPVRNHHSEETEIFFR 213
Query: 219 LSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP 278
NR+ IP I +L ++ L N LS + + R +
Sbjct: 214 CRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSD 270
Query: 279 TIGYLTNLTSLNLGYNQLNSSIPPEL 304
+ + + ++
Sbjct: 271 GQQNTLHRPLADAVTAWFPENKQSDV 296
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 1e-15
Identities = 36/254 (14%), Positives = 72/254 (28%), Gaps = 33/254 (12%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
+ L+VL + N+LT +P SL L++S N+L S+P
Sbjct: 159 PTSLEVLSVRNNQLT-FLPELPESLE---ALDVSTNLLE-SLPAVPVRNHHS-------- 205
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
N+++ +P+ + +L ++ L++N L+ I +L
Sbjct: 206 ------------EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHN 222
+ + + N + S + + E N
Sbjct: 253 QTAQPDYHG--PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHAN 310
Query: 223 RLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGY 282
+ + + Q++ L + L L + +
Sbjct: 311 TFSA-FLDRLSDTVSARNTSGFREQVAAWLEK----LSASAELRQQSFAVAADATESCED 365
Query: 283 LTNLTSLNLGYNQL 296
LT NL L
Sbjct: 366 RVALTWNNLRKTLL 379
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-32
Identities = 64/313 (20%), Positives = 107/313 (34%), Gaps = 42/313 (13%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
+ R + S L +IPS + + L+LS N + + +L L L
Sbjct: 29 SCDRNGICKGSSGSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTS 85
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTG-PIPST 159
N ++ + S +L +L HLDLS N LS L L +L L L N S
Sbjct: 86 NGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144
Query: 160 LYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELR 218
HL +L L + + + ++ L L+ L ++ ++L
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ----------------S 188
Query: 219 LSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP 278
L ++ ++ L L Q LL V ++ L L +L
Sbjct: 189 YEPKSLK--------SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240
Query: 279 TI--------GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEI-G 329
+ ++ + L + L S L L + N L S+P I
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFD 298
Query: 330 NLIHLRQLDLSHN 342
L L+++ L N
Sbjct: 299 RLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 15/242 (6%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQ 100
L+ L L+ N + TI + SL L L+LSYN L ++ F L L L L
Sbjct: 75 CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLL 132
Query: 101 GNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPS 158
GN L +S+ +LT L L + ++ ++ L L L +D ++L P
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192
Query: 159 TLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTI------GFLN 212
+L + +S L L + L V +++ L L +L S + +
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252
Query: 213 L--LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
++++ L + + ++ L L+ S NQL + L L + L N
Sbjct: 253 KFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Query: 271 NL 272
Sbjct: 312 PW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 10/188 (5%)
Query: 195 LNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPR 254
+ +L IPS G + L LS+NR+ + L +L L+SN ++ +
Sbjct: 38 GSSGSLNS-IPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94
Query: 255 EVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPELM--NCSQLQ 311
+L L+ L L N L + + L++LT LNL N ++ + + ++LQ
Sbjct: 95 SFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQ 152
Query: 312 NLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSG 370
L V + I + L L +L++ + + P L I NVS + +
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI- 211
Query: 371 VIPKSVFR 378
++ +
Sbjct: 212 LLLEIFVD 219
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 28/169 (16%), Positives = 63/169 (37%), Gaps = 12/169 (7%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
L++L++L + I + L L EL + + L P +++++ L L
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV--------GNLKNLVSLFLDNNNLT 153
+ L+ + +++ L+L L E+ ++ + + +L
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267
Query: 154 GPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLT 201
+ L ++ L L + N L +P + L +L + L+ N
Sbjct: 268 -QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-31
Identities = 61/232 (26%), Positives = 86/232 (37%), Gaps = 8/232 (3%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
L +P I + L N ++ F ++L L L N
Sbjct: 11 EPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYH 162
L + ++ L L LDLS N + L L +L LD L P
Sbjct: 68 LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127
Query: 163 LNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSH 221
L L LYL N L LP + +L NL L L+ N ++ L+ LD L L
Sbjct: 128 LAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 222 NRLDGPIPP-TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
NR+ + P +L L +L L +N LS L + L+ L L L+ N
Sbjct: 187 NRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 59/219 (26%), Positives = 87/219 (39%), Gaps = 13/219 (5%)
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLS 167
+P I + L N++S +NL L+L +N L + L L
Sbjct: 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 168 TLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNL--LDELRLSHNRL 224
L L+ N + + L L +L L+R L + + F L L L L N L
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGL-FRGLAALQYLYLQDNAL 141
Query: 225 DGPIPPTI-GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP-TIGY 282
+P +L LT L L N++S + R L LD L L +N + + P
Sbjct: 142 QA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRD 199
Query: 283 LTNLTSLNLGYNQLNSSIPPELM-NCSQLQNLAVNHNSL 320
L L +L L N L S++P E + LQ L +N N
Sbjct: 200 LGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 54/184 (29%), Positives = 73/184 (39%), Gaps = 7/184 (3%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQ 100
L +L L N L I + L L +L+LS N S+ F L L+ L L
Sbjct: 55 CRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPST 159
L L P L L +L L N L LP + +L NL LFL N ++
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERA 172
Query: 160 LYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELR 218
L+ L L L N + + +L L +L L NNL+ + L L LR
Sbjct: 173 FRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231
Query: 219 LSHN 222
L+ N
Sbjct: 232 LNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 1e-22
Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 13/202 (6%)
Query: 196 NRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPRE 255
+ L +P G + L NR+ + LT L L SN L+ +
Sbjct: 19 PQQGLQA-VPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 256 VGNLKYLDSLSLDRNNLIGPIPP-TIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNL 313
L L+ L L N + + P T L L +L+L L + P + LQ L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYL 134
Query: 314 AVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVI 372
+ N+L ++P + +L +L L L N I+ + ++ + + +N ++ +
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV 192
Query: 373 PKSVFR-VPGLKW---SENNLE 390
FR + L NNL
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 3e-19
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 7/147 (4%)
Query: 35 RIPSET-GALSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLE-FGNL 91
+ T L RL L L L + + L L L L N L ++P + F +L
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDL 152
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNN 150
+L L L GN++ + + L +L L L N+++ + +L L++L+L N
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYNNLV 177
NL+ L L L L L N V
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWV 238
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-30
Identities = 69/381 (18%), Positives = 131/381 (34%), Gaps = 53/381 (13%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
+ +L++S N ++ S+I SL L L +S+N + F ++L L L NK
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQL-SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
L + S NL HLDLS N + + +E GN+ L L L +L + H
Sbjct: 81 LVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHN 222
LN L + ++ L++ ++ L+ T I +++ L +
Sbjct: 138 LNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195
Query: 223 RLDGPIPPTIG--------------------------------------NLTYLTSLDLS 244
+ + T + +S
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255
Query: 245 SNQLSGLLPREVG-----NLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSS 299
+ +L G L +LK L + + P +N+ N +
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315
Query: 300 IPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLG---KIP 356
S +L ++N L+ ++ G+L L L L N + + ++
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMK 374
Query: 357 NVSEVDVSKNNLSGVIPKSVF 377
++ ++D+S+N++S K
Sbjct: 375 SLQQLDISQNSVSYDEKKGDC 395
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 6e-30
Identities = 75/390 (19%), Positives = 140/390 (35%), Gaps = 28/390 (7%)
Query: 10 LSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRD 69
L +++ NL + F + I E G +S+LK L LS L + I L
Sbjct: 81 LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140
Query: 70 LLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 129
L + + L+D L I +++ T +L L+ +
Sbjct: 141 SKVLLVLGE--TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 130 GRL-----------PQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLST---LYLAYNN 175
L ++ L +L L+N T + L +T ++
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258
Query: 176 LVGPLPKEVG-----NLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP 230
L G L +LK L + + P + ++ + +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318
Query: 231 TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL--IGPIPPTIGYLTNLTS 288
++ LD S+N L+ + G+L L++L L N L + I + +L
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378
Query: 289 LNLGYNQLNSSIPPEL-MNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGT 347
L++ N ++ L +L ++ N L+ +I + ++ LDL N I +
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-S 435
Query: 348 IPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
IP Q+ K+ + E++V+ N L +P +F
Sbjct: 436 IPKQVVKLEALQELNVASNQLK-SVPDGIF 464
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 67/409 (16%), Positives = 128/409 (31%), Gaps = 73/409 (17%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
LS+L++L +S+NR+ S ++L L+LS+N L I +L L L N
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFN 100
Query: 103 KLDGL-IPSSIGNLTNLTHLDLSLNQLSG----------------------RLPQEVGNL 139
D L I GN++ L L LS L ++ L
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160
Query: 140 KNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL---------VGPLPKEVGNLKNL 190
++ + L T + ++ + L +N+ L N
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220
Query: 191 DSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDG----------PIPPTIGNLTYLTS 240
L NN+ S I L L+ + + + + +L L+
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280
Query: 241 LDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI 300
+ S+ ++ + + ++ L+ N L ++
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV 340
Query: 301 PPELMNCSQLQNLAVNHNSLSGSIPSEIG---NLIHLRQLDLSHNFINGTIPS------- 350
+ ++L+ L + N L + + L+QLD+S N ++
Sbjct: 341 FENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399
Query: 351 ----------QLGKIP------NVSEVDVSKNNLSGVIPKSVFRVPGLK 383
L + +D+ N + IPK V ++ L+
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQ 447
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 3e-23
Identities = 53/298 (17%), Positives = 106/298 (35%), Gaps = 6/298 (2%)
Query: 3 NNGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPS 62
ELS + N ++ + L L+ ++ S+ R+ +
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246
Query: 63 EIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLD 122
+ + L + +LK L ++ + +N+ +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306
Query: 123 LSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL--VGPL 180
+++ + + L NN LT + HL +L TL L N L + +
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366
Query: 181 PKEVGNLKNLDSLLLNRNNLT-GPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLT 239
+ +K+L L +++N+++ + L L +S N L I + +
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIK 424
Query: 240 SLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLN 297
LDL SN++ +P++V L+ L L++ N L LT+L + L N +
Sbjct: 425 VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 7e-30
Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 25/290 (8%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
AL+ + + +T T+ L + L+ + ++ L +L L L+
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
N++ L + + NLT +T L+LS N L + L+++ +L L + +T P L
Sbjct: 73 NQITDL--APLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LA 126
Query: 162 HLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSH 221
L+ L LYL N + P + L NL L + ++ P + L+ L L+
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182
Query: 222 NRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIG 281
N++ I P + +L L + L +NQ+S + P + N L ++L + +
Sbjct: 183 NKISD-ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN---QPVF 235
Query: 282 YLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNL 331
Y NL N+ + I P + N +L+ ++ S I N+
Sbjct: 236 YNNNLVVPNVVKGPSGAPIAPA----TISDNGTYASPNLTWNLTSFINNV 281
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 65/282 (23%), Positives = 120/282 (42%), Gaps = 20/282 (7%)
Query: 90 NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDN 149
L + + + + + +L +T L ++ + V L NL+ L L +
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72
Query: 150 NNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIG 209
N +T P L +L +++ L L+ N L + L+++ +L L +T P +
Sbjct: 73 NQITDLAP--LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LA 126
Query: 210 FLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDR 269
L+ L L L N++ I P + LT L L + + Q+S L P + NL L +L D
Sbjct: 127 GLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD- 181
Query: 270 NNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIG 329
+N I I P + L NL ++L NQ+ S + P L N S L + + + +++
Sbjct: 182 DNKISDISP-LASLPNLIEVHLKNNQI-SDVSP-LANTSNLFIVTLTNQTITNQPVFYNN 238
Query: 330 NLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV 371
NL+ + P+ + + +++ N S +
Sbjct: 239 NLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 5e-15
Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 12/160 (7%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273
++ + + + +L +T+L ++ + V L L L L ++N I
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLEL-KDNQI 75
Query: 274 GPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIH 333
+ P + LT +T L L N L ++ + ++ L + ++ P + L +
Sbjct: 76 TDLAP-LKNLTKITELELSGNPL-KNVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSN 130
Query: 334 LRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373
L+ L L N I P L + N+ + + +S + P
Sbjct: 131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 58/238 (24%), Positives = 87/238 (36%), Gaps = 32/238 (13%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDL 94
+P T K LDLS+N L S +L L+LS + +I + +L L
Sbjct: 26 LPFST------KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLT 153
L L GN + L + L++L L L+ L G+LK L L + +N +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137
Query: 154 G-PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLN 212
+P +L L L L+ N + ++ L + L L
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL----------------- 180
Query: 213 LLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
L LS N ++ I P L L L +NQL + L L + L N
Sbjct: 181 ---SLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 14/211 (6%)
Query: 93 DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNN 151
+L L N L L S + L LDLS ++ + +L +L +L L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGF 210
+ L+ L L NL L G+LK L L + N + F
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQS-FKLPEYF 145
Query: 211 LNL--LDELRLSHNRLDGPIPPTIGNLTYLT----SLDLSSNQLSGLLPREVGNLKYLDS 264
NL L+ L LS N++ + L + SLDLS N ++ + P ++ L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKE 204
Query: 265 LSLDRNNLIGPIPPTI-GYLTNLTSLNLGYN 294
L+LD N L +P I LT+L + L N
Sbjct: 205 LALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 6e-25
Identities = 62/219 (28%), Positives = 88/219 (40%), Gaps = 14/219 (6%)
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQL 166
IP ++ + +LDLS N L L + L L L + L+ L
Sbjct: 22 IPDNL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 167 STLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRL- 224
STL L N + L L +L L+ NL IG L L EL ++HN +
Sbjct: 79 STLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 225 DGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD----SLSLDRNNLIGPIPPTI 280
+P NLT L LDLSSN++ + ++ L + SL L N + I P
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA 196
Query: 281 GYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHN 318
L L L NQL S+P + LQ + ++ N
Sbjct: 197 FKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 9e-15
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Query: 236 TYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYN 294
+LDLS N L L + L L L R I I L++L++L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN 86
Query: 295 QLNSSIPPEL-MNCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQ- 351
+ S+ S LQ L +L+ S+ + G+L L++L+++HN I +
Sbjct: 87 PI-QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPE 143
Query: 352 -LGKIPNVSEVDVSKNNLSGVIPKSVFRV-PGLKWSENNL 389
+ N+ +D+S N + I + RV + +L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSL 182
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-25
Identities = 68/375 (18%), Positives = 117/375 (31%), Gaps = 59/375 (15%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDL 94
+P T K L LS N ++ +I L +L L LS+N + S+ F +DL
Sbjct: 50 LPPRT------KALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDL 102
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL-SGRLPQEVGNLKNLVSLFLDNNNLT 153
L + N+L + S + +L HLDLS N + +E GNL L L L
Sbjct: 103 EYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
Query: 154 GPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNL 213
+ HL+ L + + E + N L L + + +N
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219
Query: 214 LDELRLSHNRLDGPIPPTIGNL----------------------------------TYLT 239
L L+LS+ +L+ + +
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279
Query: 240 SLDLSSNQLSGLLPREVGN-----LKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYN 294
L++ + ++ + RE LK L + + + L +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339
Query: 295 QLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGK 354
+ S L N + S+ L L+ L L N L
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN--------GLKN 391
Query: 355 IPNVSEVDVSKNNLS 369
V+ + + ++L
Sbjct: 392 FFKVALMTKNMSSLE 406
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-24
Identities = 70/389 (17%), Positives = 133/389 (34%), Gaps = 28/389 (7%)
Query: 10 LSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLR- 68
L ++ +L + F + E G L++L L LS + + L
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL 128
+ L+L + G L L + ++ L HL LS +L
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTV-LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230
Query: 129 SGR-------LPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL---NQLSTLYLAYNNLVG 178
+ E+ L+++ L + T L+ + L + +
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290
Query: 179 PLPKEVGN-----LKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIG 233
+ +E LK+L + + ++ LS +
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350
Query: 234 NLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGY 293
+ + T L+ + N + + + LK L +L L RN L N++SL
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLD 409
Query: 294 NQLNSSIPPELMNC-----SQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTI 348
LN S+ + + L ++ N L+GS+ + ++ LDL +N I +I
Sbjct: 410 VSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SI 465
Query: 349 PSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
P + + + E++V+ N L +P VF
Sbjct: 466 PKDVTHLQALQELNVASNQLK-SVPDGVF 493
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 1e-21
Identities = 45/238 (18%), Positives = 89/238 (37%), Gaps = 13/238 (5%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIG-----SLRDLLELNLSYNILNGSIPLEFGNLKDLYDL 97
++ L++ +T I E +L+ L+ ++ + S + ++
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334
Query: 98 RLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP 157
L + + + ++ T L+ + N + + Q LK L +L L N L
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FF 393
Query: 158 STLYHLNQLSTLYLAYNNLV----GPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNL 213
+S+L +L + +++ L L+ N LTG + +
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPK 451
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
+ L L +NR+ IP + +L L L+++SNQL + L L + L N
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 3e-20
Identities = 59/366 (16%), Positives = 120/366 (32%), Gaps = 25/366 (6%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
++D S LT +P ++ L+LS N ++ + L +L LRL N+
Sbjct: 31 ELESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG-PIPSTLYH 162
+ L +L +LD+S N+L + + +L L L N+ P+ +
Sbjct: 88 IRSLDFHVFLFNQDLEYLDVSHNRLQN-IS--CCPMASLRHLDLSFNDFDVLPVCKEFGN 144
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHN 222
L +L+ L L+ V +L LL + + + L L +
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204
Query: 223 RLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPT--- 279
++ L L LS+ +L+ + + + N+ T
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264
Query: 280 -------IGYLTNLTSLNLGYNQLNSSIPPELMNCS--QLQNLAVNH---NSLSGSIPSE 327
+ + LN+ + I E S L++L + H S +
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324
Query: 328 IGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW--- 384
+ LS + + + ++ ++N + + + + L+
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384
Query: 385 SENNLE 390
N L+
Sbjct: 385 QRNGLK 390
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 7e-05
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQGN 102
++KVLDL NR+ +IP ++ L+ L ELN++ N L S+P F L L + L N
Sbjct: 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507
Query: 103 KLD 105
D
Sbjct: 508 PWD 510
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-24
Identities = 54/284 (19%), Positives = 89/284 (31%), Gaps = 40/284 (14%)
Query: 17 CFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLS 76
C + F ++ IPS L +L I
Sbjct: 7 CHCSNRVFLCQESKVTE--IPS--DLPRNAIELRFVLTKLR-VIQKG------------- 48
Query: 77 YNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSI-GNLTNLTHLDLS-LNQLSGRLPQ 134
F DL + + N + +I + + NL L + + N L +
Sbjct: 49 ----------AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINP 97
Query: 135 EV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV--GNLKNLD 191
E NL NL L + N + H Q L + N + + + G
Sbjct: 98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157
Query: 192 SLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI-GNLTYLTSLDLSSNQLSG 250
L LN+N + S L + +N L+ +P + + LD+S ++
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHS 216
Query: 251 LLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYN 294
L + NLK L + S + PT+ L L +L Y
Sbjct: 217 LPSYGLENLKKLRARSTYNLKKL----PTLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 5e-22
Identities = 47/233 (20%), Positives = 78/233 (33%), Gaps = 10/233 (4%)
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDN- 149
++ +LR KL + + +L +++S N + + +V NL L + ++
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89
Query: 150 NNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTI- 208
NNL P +L L L ++ + + L + N I
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149
Query: 209 -GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS-NQLSGLLPREVGNLKYLDSLS 266
G L L+ N + I + N T L L+LS N L L L
Sbjct: 150 VGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208
Query: 267 LDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNS 319
+ R I +P L NL L +P L L ++ + S
Sbjct: 209 ISRTR-IHSLPSYG--LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 4e-18
Identities = 42/262 (16%), Positives = 83/262 (31%), Gaps = 35/262 (13%)
Query: 117 NLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176
+ ++++ +P ++ +N + L L L + ++ N++
Sbjct: 10 SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 177 VGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI-GN 234
+ + +V NL L + + + N L + I P N
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKAN------------------NLLY------INPEAFQN 102
Query: 235 LTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI--GYLTNLTSLNLG 292
L L L +S+ + L + L + N I I G L L
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQ 351
N + I N +QL L ++ N+ +P+++ LD+S I+
Sbjct: 163 KNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 221
Query: 352 LGKIPNVSEVDVSKNNLSGVIP 373
L + + NL +
Sbjct: 222 LENLKKLRARST--YNLKKLPT 241
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 4e-24
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 10/185 (5%)
Query: 138 NLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNR 197
K ++ L ++ + +N L+ + LA N+ + N+ L +N
Sbjct: 21 TFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTD--LTGIEYAHNIKDLTINN 75
Query: 198 NNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVG 257
+ T + I L+ L+ LR+ + P + LT LT LD+S + + ++
Sbjct: 76 IHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 258 NLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNH 317
L ++S+ L N I I P + L L SLN+ ++ ++ + + +L L
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190
Query: 318 NSLSG 322
++ G
Sbjct: 191 QTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 7e-24
Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 7/182 (3%)
Query: 70 LLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 129
+ + + + L + L + L + I N+ L ++ +
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT 79
Query: 130 GRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKN 189
+ L NL L + ++T L L L+ L ++++ + ++ L
Sbjct: 80 N--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137
Query: 190 LDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLS 249
++S+ L+ N I + L L L + + + I + L L S +
Sbjct: 138 VNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194
Query: 250 GL 251
G
Sbjct: 195 GK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 7e-22
Identities = 28/186 (15%), Positives = 77/186 (41%), Gaps = 10/186 (5%)
Query: 186 NLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS 245
K + LL +++ T +N L + L++ + + I + L +++
Sbjct: 21 TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD-LTG-IEYAHNIKDLTINN 75
Query: 246 NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305
+ P + L L+ L + ++ P + LT+LT L++ ++ + SI ++
Sbjct: 76 IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 306 NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSK 365
++ ++ +++N I + L L+ L++ + ++ + P ++++
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190
Query: 366 NNLSGV 371
+ G
Sbjct: 191 QTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 4/117 (3%)
Query: 14 NFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLEL 73
+ NL RI G ++ L+ L +LD+S++ +I ++I +L + +
Sbjct: 83 PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141
Query: 74 NLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG 130
+LSYN I L +L L +Q + + I + L L + G
Sbjct: 142 DLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 17/118 (14%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 258 NLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNH 317
K + L + I T + +LT + L + + + + +++L +N+
Sbjct: 21 TFKAYLNGLL-GQSSTANI--TEAQMNSLTYITLANINV-TDLTG-IEYAHNIKDLTINN 75
Query: 318 NSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKS 375
+ + I L +L +L + + L + +++ +D+S + I
Sbjct: 76 IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 6e-24
Identities = 65/381 (17%), Positives = 129/381 (33%), Gaps = 17/381 (4%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
A + +L +T + L + ++ + + + ++ L ++ L L G
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 74
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
NKL + + NL NL L L N++ + +LK L SL L++N ++ + L
Sbjct: 75 NKLTDI--KPLTNLKNLGWLFLDENKIKDLSSLK--DLKKLKSLSLEHNGIS--DINGLV 128
Query: 162 HLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSH 221
HL QL +LYL N + + L LD+L L N ++ + L L L LS
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSK 184
Query: 222 NRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIG 281
N + + + L L L+L S + NL +++ +L+ P +
Sbjct: 185 NHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242
Query: 282 YLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIH-LRQLDLS 340
++ + + + + + E+ + + + +
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIK 302
Query: 341 HNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVENPVISENA 400
GT + V + F + ++ L +
Sbjct: 303 TKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEK 362
Query: 401 PPPQTQHFKGNKGKNQKIVTP 421
T++ K +G P
Sbjct: 363 TVNLTRYVKYIRGNAGIYKLP 383
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 61/185 (32%), Positives = 78/185 (42%), Gaps = 8/185 (4%)
Query: 40 TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRL 99
+L LS N L + + L +LNL L + + G L L L L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDL 84
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPS 158
N+L L P L LT LD+S N+L+ LP L L L+L N L P
Sbjct: 85 SHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 159 TLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDEL 217
L +L L LA NNL LP + L+NLD+LLL N+L IP +LL
Sbjct: 143 LLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200
Query: 218 RLSHN 222
L N
Sbjct: 201 FLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 4e-23
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 11/203 (5%)
Query: 70 LLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 129
LE+N L ++P KD L L N L +++ T LT L+L +L+
Sbjct: 12 HLEVNCDKRNL-TALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 130 GRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLK 188
+L G L L +L L +N L +P L L+ L +++N L LP L
Sbjct: 69 -KLQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLG 124
Query: 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI-GNLTYLTSLDLSSNQ 247
L L L N L P + L++L L++N L +P + L L +L L N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENS 183
Query: 248 LSGLLPREVGNLKYLDSLSLDRN 270
L +P+ L L N
Sbjct: 184 LYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 9e-23
Identities = 57/231 (24%), Positives = 83/231 (35%), Gaps = 35/231 (15%)
Query: 114 NLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAY 173
+ + ++ L+ LP ++ K+ L L N L +TL +L+ L L
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 174 NNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIG 233
L L G L L +L L+ N L +P
Sbjct: 65 AELTK-LQ-VDGTLPVLGTLDLSHNQLQS-------------------------LPLLGQ 97
Query: 234 NLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLG 292
L LT LD+S N+L+ L + L L L L N L +PP + L L+L
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLA 156
Query: 293 YNQLNSSIPPELM-NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
N L + +P L+ L L + NSL +IP L L N
Sbjct: 157 NNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 31/145 (21%)
Query: 234 NLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGY 293
+ ++ L+ +PP + + T L+L
Sbjct: 8 KVASHLEVNCDKRNLTA-------------------------LPPDL--PKDTTILHLSE 40
Query: 294 NQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLG 353
N L + LM ++L L ++ L+ + + G L L LDLSHN + ++P
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQ 97
Query: 354 KIPNVSEVDVSKNNLSGVIPKSVFR 378
+P ++ +DVS N L+ +P R
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALR 121
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 9e-24
Identities = 50/276 (18%), Positives = 90/276 (32%), Gaps = 23/276 (8%)
Query: 113 GNLTNLTHLDLSLNQLSGRLP-QEVGNLKNLVSLFLDNNNLTGPIPSTLYHL---NQLST 168
G +L +L ++ + ++ +L L + + I + + L
Sbjct: 40 GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99
Query: 169 LYLAYNNLVGPLPKEVGNL--KNLDSLLLNRNNLTGPIPSTIGFLNLLD----ELRLSHN 222
L L + G P + +L+ L L + L L ++
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 223 RLDGPIPPTIGNLTYLTSLDLSSNQLSG-------LLPREVGNLKYLDSLSLDRNNLIGP 275
+ L++LDLS N G L P + L+ L + G
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 276 IPPTIGYLTNLTSLNLGYNQLNSSIPPELM-NCSQLQNLAVNHNSLSGSIPSEIGNLIHL 334
L L+L +N L + SQL +L ++ L +P + L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KL 276
Query: 335 RQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSG 370
LDLS+N ++ PS ++P V + + N
Sbjct: 277 SVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 99.2 bits (247), Expect = 4e-23
Identities = 53/222 (23%), Positives = 74/222 (33%), Gaps = 19/222 (8%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSL--RDLLELNLSYNILNGSIP----LEFGNLKDLYD 96
+S L+ L L +TGT P + DL LNL L+ L
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE----VGNLKNLVSLFLDNNNL 152
L + + L+ LDLS N G L L L N +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 153 T---GPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTI 208
G + QL L L++N+L L+SL L+ L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273
Query: 209 GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSG 250
L++LD LS+NRLD P+ L + +L L N
Sbjct: 274 AKLSVLD---LSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 6e-22
Identities = 51/268 (19%), Positives = 90/268 (33%), Gaps = 19/268 (7%)
Query: 70 LLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 129
L ++ ++ + ++ +LK L + + ++ L L L +++
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 130 GRLPQEVGNL--KNLVSLFLDNNNLTGPIPSTL----YHLNQLSTLYLAYNNLVGPLPKE 183
G P + +L L L N + + L L +A + + ++
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 184 VGNLKNLDSLLLNRNNLTGPIPSTI----GFLNLLDELRLSHNR---LDGPIPPTIGNLT 236
V L +L L+ N G L L L + G
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228
Query: 237 YLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQ 295
L LDLS N L L+SL+L L +P + L+ L+L YN+
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNR 285
Query: 296 LNSSIPPELMNCSQLQNLAVNHNSLSGS 323
L+ + P Q+ NL++ N S
Sbjct: 286 LDRN--PSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 5e-19
Identities = 41/169 (24%), Positives = 54/169 (31%), Gaps = 13/169 (7%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-------FGNLKDLY 95
LKVL ++ ++ L L+LS N G L F L+ L
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTG 154
G+ + L LDLS N L L SL L L
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267
Query: 155 PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGP 203
+P L +LS L L+YN L P L + +L L N
Sbjct: 268 -VPKGLPA--KLSVLDLSYNRLDR-NPSP-DELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 44/234 (18%), Positives = 74/234 (31%), Gaps = 36/234 (15%)
Query: 185 GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLS 244
G ++L+ LL + F +++ L L + + +
Sbjct: 40 GGGRSLEYLLKRVDTEADLGQ----FTDIIKSLSLKRL--------------TVRAARIP 81
Query: 245 SNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIG--YLTNLTSLNLGYNQLNS--SI 300
S L G L V + L L+L+ + G PP + +L LNL + +
Sbjct: 82 SRILFGAL--RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW 139
Query: 301 PPELMNCSQ--LQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIP----SQLGK 354
EL + L+ L++ ++ L LDLS N G K
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199
Query: 355 IPNVSEVDVSKNN---LSGVIPKSVFRVPGLKW---SENNLEVENPVISENAPP 402
P + + + SGV L+ S N+L S + P
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 57/260 (21%), Positives = 101/260 (38%), Gaps = 22/260 (8%)
Query: 90 NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDN 149
+ L+ + + L ++ + + + + + Q + L N+ LFL+
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77
Query: 150 NNLTGPIPSTLYHLNQLSTLYLAYNNL--VGPLPKEVGNLKNLDSLLLNRNNLTGPIPST 207
N LT P L +L L L+L N + + L +LK L SL L N ++ +
Sbjct: 78 NKLTDIKP--LANLKNLGWLFLDENKVKDLSSL----KDLKKLKSLSLEHNGIS--DING 129
Query: 208 IGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
+ L L+ L L +N++ + LT L +L L NQ+S ++P + L L +L L
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185
Query: 268 DRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSE 327
N I + + L NL L L + + N + SL P
Sbjct: 186 S-KNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEI 241
Query: 328 IGNLIHLRQLDLSHNFINGT 347
I + + ++ + T
Sbjct: 242 ISDDGDYEKPNVKWHLPEFT 261
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 3e-22
Identities = 58/258 (22%), Positives = 106/258 (41%), Gaps = 18/258 (6%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
A + +L +T + L + ++ + + + ++ L ++ L L G
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
NKL + + NL NL L L N++ + +LK L SL L++N ++ + L
Sbjct: 78 NKLTDI--KPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS--DINGLV 131
Query: 162 HLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSH 221
HL QL +LYL N + + L LD+L L N ++ +P + L L L LS
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 222 NRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIG 281
N + + + L L L+L S + NL +++ +L+ P I
Sbjct: 188 NHISD-LRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE--IIS 243
Query: 282 YLTNLTSLNLGYNQLNSS 299
+ N+ ++ +
Sbjct: 244 DDGDYEKPNVKWHLPEFT 261
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-20
Identities = 61/303 (20%), Positives = 112/303 (36%), Gaps = 53/303 (17%)
Query: 99 LQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPS 158
+ + +L ++ + Q L ++ + +N+++
Sbjct: 9 TVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK--SVQ 62
Query: 159 TLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELR 218
+ +L ++ L+L N L P + NLKNL L L+ N + + L
Sbjct: 63 GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-----DLSSLK------ 109
Query: 219 LSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP 278
+L L SL L N +S + + +L L+SL L N I I
Sbjct: 110 ---------------DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNK-ITDITV 151
Query: 279 TIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLD 338
+ LT L +L+L NQ+ S I P L ++LQNL ++ N +S + + L +L L+
Sbjct: 152 -LSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLE 206
Query: 339 LSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVENPVISE 398
L + + + V + +L S ++ + E P +
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS-----------DDGDYEKPNVKW 255
Query: 399 NAP 401
+ P
Sbjct: 256 HLP 258
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 4e-21
Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 10/207 (4%)
Query: 93 DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFL-DNN 150
L+L L + + NL N++ + +S++ +L NL + + + +
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYNNLVG-PLPKEVGNLKNLDSLLLNRNNLTGPIPSTI- 208
NLT P L L L L + L P +V + L + N IP
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151
Query: 209 -GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV--GNLKYLDSL 265
G N L+L +N + N T L ++ L+ N+ ++ ++ G L
Sbjct: 152 QGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210
Query: 266 SLDRNNLIGPIPPTI-GYLTNLTSLNL 291
+ + ++ +P +L L + N
Sbjct: 211 DVSQTSVTA-LPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 4e-20
Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 32/229 (13%)
Query: 46 LKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKL 104
+ L L L TIPS +L ++ + +S + L
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID-----------------------VTL 68
Query: 105 DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTG-PIPSTLYH 162
L S NL+ +TH+++ + + + L L L + N L P + +Y
Sbjct: 69 QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128
Query: 163 LNQLSTLYLAYNNLVGPLPKEV-GNLKN-LDSLLLNRNNLTGPIPSTIGFLNLLDELRLS 220
+ L + N + +P L N +L L N T + LD + L+
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLN 187
Query: 221 HNRLDGPIPPTI--GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
N+ I G + + LD+S ++ L + + +LK L + +
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-16
Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 15/220 (6%)
Query: 141 NLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200
+ ++ IPS TL L +L NL N+ + ++ +
Sbjct: 12 QEEDFRVTCKDIQR-IPSLPPST---QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 201 TGPIPSTIGFLNL--LDELRLSHNRLDGPIPP-TIGNLTYLTSLDLSSNQLSGLLP-REV 256
+ S F NL + + + + R I P + L L L + + L +V
Sbjct: 68 LQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126
Query: 257 GNLKYLDSLSLDRNNLIGPIPP-TIGYLTNLT-SLNLGYNQLNSSIPPELMNCSQLQNLA 314
+ L + N + IP L N T +L L N +S+ N ++L +
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVY 185
Query: 315 VNHNSLSGSIPSEI--GNLIHLRQLDLSHNFINGTIPSQL 352
+N N I + G LD+S + +PS+
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 8/152 (5%)
Query: 238 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQL 296
+L L L + NL + + + + + + L+ +T + + +
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92
Query: 297 NSSIPPE-LMNCSQLQNLAVNHNSLSGSIPSE--IGNLIHLRQLDLSHNFINGTIPSQL- 352
+ I P+ L L+ L + + L P + + L+++ N +IP
Sbjct: 93 LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151
Query: 353 -GKIPNVSEVDVSKNNLSGVIPKSVFRVPGLK 383
G + + N + + F L
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD 182
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 10/158 (6%)
Query: 19 PNLVTFRIWGTRFLSGRIPSET-GALSRLKVLDLSYNRLTGTIPSE--IGSLRDLLELNL 75
+ I TR L+ I + L LK L + L P + S L +
Sbjct: 80 SKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEI 137
Query: 76 SYNILNGSIPLE-FGNL-KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 133
+ N SIP+ F L + L+L N + N T L + L+ N+ +
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVID 196
Query: 134 QEV--GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTL 169
++ G L + ++T L HL +L
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 13/164 (7%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIP--LEFGNLKDLYDLRL 99
LS++ +++ R I + L L L + L P + + + L +
Sbjct: 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEI 137
Query: 100 QGNKLDGLIPS-SIGNLTNLT-HLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP 157
N IP + L N T L L N + + N L +++L+ N I
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID 196
Query: 158 STLYH--LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN 199
+ + S L ++ ++ LP + L++L L+ RN
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTA-LPSKG--LEHLKELIA-RNT 236
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 1e-20
Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQ 100
L++L++L L+ N+L T+P+ I L++L L ++ N L ++P+ F L +L +LRL
Sbjct: 60 LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPST 159
N+L L P +LT LT+L L N+L LP+ V L +L L L NN L
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 160 LYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRN 198
L +L TL L N L +L+ L L L N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 62/194 (31%), Positives = 80/194 (41%), Gaps = 14/194 (7%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDL 94
IP++T K LDL N+L+ L L L L+ N L ++P F LK+L
Sbjct: 35 IPADT------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLT 153
L + NKL L L NL L L NQL LP V +L L L L N L
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 154 GPIPSTLY-HLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFL 211
+P ++ L L L L N L +P+ L L +L L+ N L L
Sbjct: 147 S-LPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Query: 212 NLLDELRLSHNRLD 225
L L+L N D
Sbjct: 205 EKLKMLQLQENPWD 218
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 58/182 (31%), Positives = 79/182 (43%), Gaps = 8/182 (4%)
Query: 141 NLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNN 199
+ L L +N L+ + L +L LYL N L LP + LKNL++L + N
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK 96
Query: 200 LTGPIPSTIGFLNL--LDELRLSHNRLDGPIPPTI-GNLTYLTSLDLSSNQLSGLLPREV 256
L +P + F L L ELRL N+L +PP + +LT LT L L N+L L
Sbjct: 97 LQA-LPIGV-FDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 257 GNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVN 316
L L L L N L LT L +L L NQL + +L+ L +
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Query: 317 HN 318
N
Sbjct: 214 EN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 5e-20
Identities = 63/183 (34%), Positives = 85/183 (46%), Gaps = 10/183 (5%)
Query: 93 DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNN 151
D L LQ NKL L + LT L L L+ N+L LP + LKNL +L++ +N
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK 96
Query: 152 LTGPIPSTLY-HLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIG 209
L +P ++ L L+ L L N L LP V +L L L L N L +P +
Sbjct: 97 LQA-LPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQS-LPKGV- 152
Query: 210 FLNL--LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
F L L ELRL +N+L LT L +L L +NQL + +L+ L L L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 268 DRN 270
N
Sbjct: 213 QEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI-GNLTYLTSLDLSSNQ 247
+ L L N L+ L L L L+ N+L +P I L L +L ++ N+
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK 96
Query: 248 LSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPELMN 306
L L L L L LDRN L +PP + LT LT L+LGYN+L S+P + +
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFD 154
Query: 307 C-SQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHN 342
+ L+ L + +N L +P L L+ L L +N
Sbjct: 155 KLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-20
Identities = 45/253 (17%), Positives = 88/253 (34%), Gaps = 27/253 (10%)
Query: 99 LQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPS 158
+ ++ + P L N +L ++ + Q+ L + + DN+N+ +
Sbjct: 4 QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ--SLA 57
Query: 159 TLYHLNQLSTLYLAYNNL--VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNL--L 214
+ L L+L++N + + PL +L L+ L +NRN L + + L
Sbjct: 58 GMQFFTNLKELHLSHNQISDLSPL----KDLTKLEELSVNRNRLK-----NLNGIPSACL 108
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG 274
L L +N L + +L L L + +N+L ++ +G L L+ L L N I
Sbjct: 109 SRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLH-GNEIT 163
Query: 275 PIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHL 334
+ L + ++L + + + P I N
Sbjct: 164 NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSY 220
Query: 335 RQLDLSHNFINGT 347
+ T
Sbjct: 221 VDGCVLWELPVYT 233
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 8e-18
Identities = 46/238 (19%), Positives = 87/238 (36%), Gaps = 17/238 (7%)
Query: 62 SEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHL 121
L + ++ NL + + + L + + + + L + + TNL L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSL--AGMQFFTNLKEL 68
Query: 122 DLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLP 181
LS NQ+S + +L L L ++ N L + + LS L+L N L
Sbjct: 69 HLSHNQISD--LSPLKDLTKLEELSVNRNRLK--NLNGIPSAC-LSRLFLDNNELRDTDS 123
Query: 182 KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSL 241
+ +LKNL+ L + N L +GFL+ L+ L L N + + L + +
Sbjct: 124 --LIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177
Query: 242 DLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSS 299
DL+ + + L +++ I P I + + + +
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY--YISNGGSYVDGCVLWELPVYT 233
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 11/159 (6%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L++L+ L ++ NRL L L L N L + L +LK+L L ++ N
Sbjct: 84 LTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELRDTDSLI--HLKNLEILSIRNN 138
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
KL + +G L+ L LDL N+++ + LK + + L
Sbjct: 139 KLKSI--VMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPE 194
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT 201
L +T+ + P + N + +
Sbjct: 195 LYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPV 231
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 91.4 bits (226), Expect = 2e-19
Identities = 49/282 (17%), Positives = 90/282 (31%), Gaps = 45/282 (15%)
Query: 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL 128
DL +L+ + + + + + L ++ + L +LS+ +
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEKS 361
Query: 129 SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLK 188
+ L E+ + K L L +N I + L+ L LK
Sbjct: 362 T-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS--------TLK 412
Query: 189 NLDSLLL-----NRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDL 243
+D + R+ + L L+H L + + L +T LDL
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDL 470
Query: 244 SSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPE 303
S N+L +PP + L L L N L ++
Sbjct: 471 SHNRLRA-------------------------LPPALAALRCLEVLQASDNAL-ENVDG- 503
Query: 304 LMNCSQLQNLAVNHNSLSG-SIPSEIGNLIHLRQLDLSHNFI 344
+ N +LQ L + +N L + + + L L+L N +
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 3e-14
Identities = 48/250 (19%), Positives = 78/250 (31%), Gaps = 46/250 (18%)
Query: 37 PSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYD 96
++ +L +LS + T + SE+ S ++L EL +I L L L
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400
Query: 97 LRLQGNKLDGL---------------------IPSSIGNLTNLTHLDLSLNQLSGRLPQE 135
+ L ++ L L+ L+ L
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-H 458
Query: 136 VGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLL 195
+ L + L L +N L +P L L L L + N L + V NL L LLL
Sbjct: 459 LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515
Query: 196 NRNNLTG-PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPR 254
N L + L L L N L + +L+ +LP
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNS--------------LCQEEGIQERLAEMLP- 560
Query: 255 EVGNLKYLDS 264
++ + +
Sbjct: 561 ---SVSSILT 567
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 1e-09
Identities = 41/256 (16%), Positives = 83/256 (32%), Gaps = 26/256 (10%)
Query: 135 EVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLL 194
V + +S+ G TL + + L + + G L +L +
Sbjct: 249 HVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAAS 308
Query: 195 LNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPR 254
LN + E L +R + L +LS + + +L
Sbjct: 309 LNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEKST-VLQS 366
Query: 255 EVGNLKYLDSLSLDRN-------------NLIGPIPPTIGYLTNLTSLN--------LGY 293
E+ + K L L + + + T+ Y + L +++
Sbjct: 367 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426
Query: 294 NQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLG 353
++ M + ++ L + H L+ + + L+ + LDLSHN + +P L
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483
Query: 354 KIPNVSEVDVSKNNLS 369
+ + + S N L
Sbjct: 484 ALRCLEVLQASDNALE 499
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 6e-08
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 10 LSQLNFTCFPNLVTFRIWGTRFLSG----RIPSETGALSRLKVLDLSYNRLTGTIPSEIG 65
L+ + T +L + LS +P AL L+VL S N L + +
Sbjct: 448 LAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVA 505
Query: 66 SLRDLLELNLSYN-ILNGSIPLEFGNLKDLYDLRLQGN---KLDGLIPSSIGNLTNLTHL 121
+L L EL L N + + + L L LQGN + +G+ L +++ +
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
Query: 122 D 122
Sbjct: 566 L 566
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 4e-19
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 18/172 (10%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEI--GSLRDLLELNLSYNILNGSIPLE-FGNLK 92
+PS T +LDLS+N L+ + +E L +L L LS+N LN I E F +
Sbjct: 37 LPSYT------ALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88
Query: 93 DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNN 151
+L L L N L L +L L L L N + + + ++ L L+L N
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ 147
Query: 152 LTGPIP----STLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN 199
++ P L +L L L+ N L ++ L L +N
Sbjct: 148 ISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 1e-15
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 15/187 (8%)
Query: 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI--GNLTYLTSLDLSSN 246
+ L ++ L +P ++ + L LSHN L + LT L SL LS N
Sbjct: 19 ASNILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHN 74
Query: 247 QLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP-TIGYLTNLTSLNLGYNQLNSSIPPE-L 304
L+ + + L L L N+L + L L L L N + +
Sbjct: 75 HLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHI-VVVDRNAF 132
Query: 305 MNCSQLQNLAVNHNSLSGSIPSEI----GNLIHLRQLDLSHNFINGTIPSQLGKIPNVSE 360
+ +QLQ L ++ N +S P E+ L L LDLS N + + L K+P +
Sbjct: 133 EDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191
Query: 361 VDVSKNN 367
+ +N
Sbjct: 192 NGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 5e-15
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 19/183 (10%)
Query: 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPST 207
L +P +L + + L L++NNL + L NL SLLL+ N+L I S
Sbjct: 27 KQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSE 82
Query: 208 IGFLNL--LDELRLSHNRLDGPIPP-TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDS 264
F+ + L L LS N L + +L L L L +N + + ++ L
Sbjct: 83 A-FVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140
Query: 265 LSLDRNNLIGPIPP----TIGYLTNLTSLNLGYNQLNSSIPPEL---MNCSQLQNLAVNH 317
L L N I P L L L+L N+L +P + L +++
Sbjct: 141 LYLS-QNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHN 198
Query: 318 NSL 320
N L
Sbjct: 199 NPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 17/147 (11%)
Query: 239 TSLDLSSNQLSGL---LPREVGNLKYLDSLSLDRNNLIGPIPPTI--GYLTNLTSLNLGY 293
L S QL + LP L L NN + + LTNL SL L +
Sbjct: 21 NILSCSKQQLPNVPQSLPSYT------ALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSH 73
Query: 294 NQLNSSIPPE-LMNCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQ 351
N L + I E + L+ L ++ N L ++ + +L L L L +N I +
Sbjct: 74 NHL-NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNA 131
Query: 352 LGKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ + ++ +S+N +S P + +
Sbjct: 132 FEDMAQLQKLYLSQNQIS-RFPVELIK 157
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 6e-19
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDL 94
+P + L N + P + L ++LS N ++ + + F L+ L
Sbjct: 30 LPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLT 153
L L GNK+ L S L +L L L+ N+++ L + +L NL L L +N L
Sbjct: 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141
Query: 154 GPIPSTLYHLNQLSTLYLAYNN 175
T L + T++L N
Sbjct: 142 TIAKGTFSPLRAIQTMHL-AQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-15
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 5/148 (3%)
Query: 52 SYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSS 111
LT IP+ + + E+ L N + P F K L + L N++ L P +
Sbjct: 19 RGKGLT-EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75
Query: 112 IGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLY 170
L +L L L N+++ LP+ + L +L L L+ N + L+ L+ L
Sbjct: 76 FQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134
Query: 171 LAYNNLVGPLPKEVGNLKNLDSLLLNRN 198
L N L L+ + ++ L +N
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-14
Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 32/166 (19%)
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQL 166
IP+++ +T + L N + +P K L + L NN ++ P L L
Sbjct: 26 IPTNL--PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 167 STLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD 225
++L L N + LPK + L +L LLLN N +
Sbjct: 83 NSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINC----------------------- 118
Query: 226 GPIPP-TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
+ +L L L L N+L + L+ + ++ L +N
Sbjct: 119 --LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 5e-14
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTI-GNLTYLTSLDLSSNQLSGLLPREVGNLKYL 262
+P TI E+RL N + IPP L +DLS+NQ+S L P L+ L
Sbjct: 30 LPETI------TEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 263 DSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPELM-NCSQLQNLAVNHNSL 320
+SL L N + +P ++ L +L L L N++ + + + + L L++ N L
Sbjct: 83 NSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKL 140
Query: 321 SGSIPSEI-GNLIHLRQLDLSHN 342
+I L ++ + L+ N
Sbjct: 141 Q-TIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-13
Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 28/159 (17%)
Query: 141 NLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNN 199
+ + L+ N + P +L + L+ N + L + L++L+SL+L N
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNK 91
Query: 200 LTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI-GNLTYLTSLDLSSNQLSGLLPREVGN 258
+T +P ++ L L L L++N+++ L +
Sbjct: 92 ITE-------------------------LPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126
Query: 259 LKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLN 297
L L+ LSL N L T L + +++L N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNL 286
+P TI T + L N + + P K L + L NN I + P L +L
Sbjct: 30 LPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSL 82
Query: 287 TSLNLGYNQLNSSIPPELM-NCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFI 344
SL L N++ + +P L LQ L +N N ++ + + +L +L L L N +
Sbjct: 83 NSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 5e-11
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI-GNLTYLTSLDLSSNQ 247
+ + L +N + P L + LS+N++ + P L L SL L N+
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNK 91
Query: 248 LSGLLPREVGNLKYLDSLSLDRNNLIGPIPP-TIGYLTNLTSLNLGYNQLNSSIPPE-LM 305
++ L L L L L+ N + + L NL L+L N+L +I
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFS 149
Query: 306 NCSQLQNLAVNHN 318
+Q + + N
Sbjct: 150 PLRAIQTMHLAQN 162
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 5e-18
Identities = 73/348 (20%), Positives = 122/348 (35%), Gaps = 65/348 (18%)
Query: 42 ALSRLKVLDLSYNRLTGT----IPSEIGSLRDLLELNLSYNILNGS------IPLEFGNL 91
L + +V+ L LT I S + L ELNL N L L+ +
Sbjct: 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85
Query: 92 KDLYDLRLQGNKLD----GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----NLKNL 142
K + L LQ L G++ S++ L L L LS N L Q + L
Sbjct: 86 K-IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144
Query: 143 VSLFLDNNNLT----GPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRN 198
L L+ +L+ P+ S L L ++ N++ E G ++ L L +
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-----NEAG-VRVL-CQGLKDS 197
Query: 199 NLTGPIPSTIGFLNLLDELRLSHNRLD----GPIPPTIGNLTYLTSLDLSSNQLSG---- 250
L+ L+L + + + + L L L SN+L
Sbjct: 198 PCQ------------LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245
Query: 251 -LLPREVGNLKYLDSLSLDRNNL----IGPIPPTIGYLTNLTSLNLGYNQLNSS----IP 301
L P + L +L + + G + + +L L+L N+L +
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305
Query: 302 PELMNC-SQLQNLAVNHNSLSG----SIPSEIGNLIHLRQLDLSHNFI 344
L+ QL++L V S + S + L +L +S+N +
Sbjct: 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 8e-16
Identities = 68/344 (19%), Positives = 123/344 (35%), Gaps = 63/344 (18%)
Query: 45 RLKVLDLSYNRLTGT----IPSEIGSLRDLLELNLSYNILNGS-IPLEFGNLKD----LY 95
+++ L L LTG + S + +L L EL+LS N+L + + L L D L
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145
Query: 96 DLRLQGNKLD----GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----NLKNLVSLF 146
L+L+ L + S + + L +S N ++ + + + L +L
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205
Query: 147 LDNNNLT----GPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTG 202
L++ +T + + L L L N L +VG + L LL+ +
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKL-----GDVG-MAELCPGLLHPS---- 255
Query: 203 PIPSTIGFLNLLDELRLSHNRLDGP----IPPTIGNLTYLTSLDLSSNQLS-----GLLP 253
+ L L + + + + L L L+ N+L L
Sbjct: 256 ---------SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306
Query: 254 REVGNLKYLDSLSLDRNNL----IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPEL----- 304
+ L+SL + + + L L + N+L + EL
Sbjct: 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 366
Query: 305 MNCSQLQNLAVNHNSLS----GSIPSEIGNLIHLRQLDLSHNFI 344
S L+ L + +S S+ + + LR+LDLS+N +
Sbjct: 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 64/313 (20%), Positives = 112/313 (35%), Gaps = 55/313 (17%)
Query: 68 RDLLELNLSYNILNGSIPLEFG-NLKDLYDLRLQGNKLD----GLIPSSIGNLTNLTHLD 122
D+ L++ L+ + E L+ +RL L I S++ L L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 123 LSLNQLSGRLPQEVGN-LKN----LVSLFLDNNNLT----GPIPSTLYHLNQLSTLYLAY 173
L N+L V L+ + L L N LT G + STL L L L+L+
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 174 NNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD----GPIP 229
N L L+ L LL+ L++L+L + L P+
Sbjct: 123 NLLGDA------GLQLLCEGLLDPQ-------------CRLEKLQLEYCSLSAASCEPLA 163
Query: 230 PTIGNLTYLTSLDLSSNQLSG-----LLPREVGNLKYLDSLSLDRNNL----IGPIPPTI 280
+ L +S+N ++ L + L++L L+ + + +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223
Query: 281 GYLTNLTSLNLGYNQLNSS-----IPPELMNCSQLQNLAVNHNSLS----GSIPSEIGNL 331
+L L LG N+L P L S+L+ L + ++ G + +
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283
Query: 332 IHLRQLDLSHNFI 344
L++L L+ N +
Sbjct: 284 ESLKELSLAGNEL 296
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 56/302 (18%), Positives = 93/302 (30%), Gaps = 70/302 (23%)
Query: 45 RLKVLDLSYNRLT----GTIPSEIGSLRDLLELNLSYNILNGS-----IPLEFGNLKDLY 95
+L+ L L +T + + S L EL L N L P L
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259
Query: 96 DLRLQGNKLD----GLIPSSIGNLTNLTHLDLSLNQLSG----RLPQEVGN-LKNLVSLF 146
L + + G + + +L L L+ N+L L + + L SL+
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319
Query: 147 LDNNNLTG----PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTG 202
+ + + T S L L L ++ N L E ++ L L
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL------EDAGVRELCQGLGQPG---- 369
Query: 203 PIPSTIGFLNLLDELRLSHNRLD----GPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGN 258
++L L L+ + + T+ L LDLS+N L + G
Sbjct: 370 ---------SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG-----DAG- 414
Query: 259 LKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHN 318
+ L S+ + L L L + + +LQ L +
Sbjct: 415 ILQL-VESVRQPG------------CLLEQLVLYDIYWSEEM------EDRLQALEKDKP 455
Query: 319 SL 320
SL
Sbjct: 456 SL 457
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-17
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 10/142 (7%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLEFGNLKDL 94
IP T L L+ N T + I L L ++N S N + F +
Sbjct: 30 IPQYT------AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLT 153
++ L N+L+ + L +L L L N+++ + + L ++ L L +N +T
Sbjct: 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142
Query: 154 GPIPSTLYHLNQLSTLYLAYNN 175
P L+ LSTL L N
Sbjct: 143 TVAPGAFDTLHSLSTLNL-LAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 7e-14
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQL 166
IP I L L+ N+ + + L L + NN +T + +
Sbjct: 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83
Query: 167 STLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD 225
+ + L N L + ++ L++L +L+L N +T + L+ + L L N++
Sbjct: 84 NEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI- 141
Query: 226 GPIPP-TIGNLTYLTSLDLSSNQL 248
+ P L L++L+L +N
Sbjct: 142 TTVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-13
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Query: 168 TLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDG 226
L L N + L L + + N +T + ++E+ L+ NRL+
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 227 PIPPTI-GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP-TIGYLT 284
+ + L L +L L SN+++ + L + LSL N + + P L
Sbjct: 96 -VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLH 153
Query: 285 NLTSLNLGYNQLN 297
+L++LNL N N
Sbjct: 154 SLSTLNLLANPFN 166
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 215 DELRLSHNRLDGPIPPTIG--NLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
ELRL++N + T L L ++ S+N+++ + ++ + L N L
Sbjct: 35 AELRLNNNEFTV-LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93
Query: 273 IGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPEL-MNCSQLQNLAVNHNSLSGSIPSEI-G 329
+ + L +L +L L N++ + + + + S ++ L++ N ++ ++
Sbjct: 94 EN-VQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFD 150
Query: 330 NLIHLRQLDLSHN 342
L L L+L N
Sbjct: 151 TLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-11
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDRNNLIGPIPPTI-GYLTN 285
IP I Y L L++N+ + L + L L ++ NN I I +
Sbjct: 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASG 82
Query: 286 LTSLNLGYNQLNSSIPPELM-NCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNF 343
+ + L N+L ++ ++ L+ L + N ++ + ++ L +R L L N
Sbjct: 83 VNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQ 140
Query: 344 INGTIP 349
I T+
Sbjct: 141 IT-TVA 145
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQ 100
S + + L+ NRL + ++ L L L L N + + + F L + L L
Sbjct: 80 ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLY 137
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQL 128
N++ + P + L +L+ L+L N
Sbjct: 138 DNQITTVAPGAFDTLHSLSTLNLLANPF 165
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 3e-16
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDL 94
IP+ ++L L N++T P SL +L EL L N L ++P+ F +L L
Sbjct: 38 IPTNA------QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG 154
L L N+L L + L +L L + N+L+ LP+ + L +L L LD N L
Sbjct: 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149
Query: 155 PIPSTLYHLNQLSTLYLAYNN 175
L+ L+ YL + N
Sbjct: 150 IPHGAFDRLSSLTHAYL-FGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 9e-11
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNL 286
+P I L L NQ++ L P +L L L L N L G +P + LT L
Sbjct: 34 VPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQL 90
Query: 287 TSLNLGYNQLNSSIPPELMNC-SQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
T L+LG NQL + +P + + L+ L + N L+ +P I L HL L L N
Sbjct: 91 TVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN--- 145
Query: 346 GTIPSQLGKIPN 357
QL IP+
Sbjct: 146 -----QLKSIPH 152
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 3e-10
Identities = 46/130 (35%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 144 SLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTG 202
L+L +N +T P L L LYL N L LP V +L L L L N LT
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 203 PIPSTIGF--LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLK 260
+PS + F L L EL + N+L +P I LT+LT L L NQL + L
Sbjct: 103 -LPSAV-FDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 261 YLDSLSLDRN 270
L L N
Sbjct: 160 SLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 191 DSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI-GNLTYLTSLDLSSNQLS 249
L L+ N +T P L L EL L N+L +P + +LT LT LDL +NQL+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLT 101
Query: 250 GLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 298
L L +L L + N L +P I LT+LT L L NQL S
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKS 149
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
L++L VLDL N+LT +PS + L L EL + N L +P L L L L
Sbjct: 87 LTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQ 127
N+L + + L++LTH L N
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGNP 170
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-15
Identities = 53/181 (29%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDG 106
K +D L ++PS I + + L+L L F L L L L N+L
Sbjct: 17 KEVDCQGKSLD-SVPSGIPADTEKLDLQ--STGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 107 LIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165
L +LT L L L+ NQL+ LP V +L L L+L N L L +
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132
Query: 166 LSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRL 224
L L L N L +P L NL +L L+ N L L L + L N+
Sbjct: 133 LKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Query: 225 D 225
D
Sbjct: 192 D 192
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 6e-15
Identities = 44/135 (32%), Positives = 61/135 (45%), Gaps = 5/135 (3%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
L++L L+L YN+L T+ + + L +L L L+ N L F +L L L L G
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTL 160
N+L L LT L L L+ NQL +P L NL +L L N L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 161 YHLNQLSTLYLAYNN 175
L +L T+ L + N
Sbjct: 176 DRLGKLQTITL-FGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 5e-12
Identities = 51/177 (28%), Positives = 66/177 (37%), Gaps = 30/177 (16%)
Query: 169 LYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPI 228
L L L L L L L+ N L L L L L++N+L +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-L 98
Query: 229 PPTI-GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLT 287
P + +LT L L L NQL LP V DR LT L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKS-LPSGV----------FDR-------------LTKLK 134
Query: 288 SLNLGYNQLNSSIPPELMNC-SQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHN 342
L L NQL SIP + + LQ L+++ N L S+P L L+ + L N
Sbjct: 135 ELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 49/146 (33%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG 274
++L L L T LT LT L+L NQL L +L L +L L N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-A 96
Query: 275 PIPPTI-GYLTNLTSLNLGYNQLNSSIPPELM-NCSQLQNLAVNHNSLSGSIPSEI-GNL 331
+P + +LT L L LG NQL S+P + ++L+ L +N N L SIP+ L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154
Query: 332 IHLRQLDLSHNFINGTIPSQLGKIPN 357
+L+ L LS N QL +P+
Sbjct: 155 TNLQTLSLSTN--------QLQSVPH 172
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 263 DSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNC-SQLQNLAVNHNSLS 321
+ L L L T LT LT LNL YNQL ++ + + ++L L + +N L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96
Query: 322 GSIPSEI-GNLIHLRQLDLSHNFINGTIPSQLGKIP--------NVSEVDVSKNNLSGVI 372
S+P + +L L +L L N QL +P + E+ ++ N L I
Sbjct: 97 -SLPLGVFDHLTQLDKLYLGGN--------QLKSLPSGVFDRLTKLKELRLNTNQLQ-SI 146
Query: 373 PKSVFR 378
P F
Sbjct: 147 PAGAFD 152
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 8/160 (5%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L+ + + + + + ++ I L ++ L L N L+ I L +L L L GN
Sbjct: 40 LNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH-DISA-LKELTNLTYLILTGN 95
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN-LKNLVSLFLDNNNLTGPIPSTLY 161
+L L LTNL L L NQL LP V + L NL L L +N L
Sbjct: 96 QLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD 154
Query: 162 HLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNL 200
L L+ L L+YN L LP+ V L L L L +N L
Sbjct: 155 KLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQL 193
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-13
Identities = 56/168 (33%), Positives = 76/168 (45%), Gaps = 24/168 (14%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIG---SLRDLLELNLSYNILNGSIPLE-FGNLKDLYDL 97
L ++ L L N+L +I L +L L L+ N L S+P F L +L +L
Sbjct: 61 YLPNVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKEL 114
Query: 98 RLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPI 156
L N+L L LTNLT+L+L+ NQL LP+ V L NL L L N L +
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-L 172
Query: 157 PSTLY-HLNQLSTLYLAYNNLVGPLPKEV-----GNLKNLDSLLLNRN 198
P ++ L QL L L N L K V L +L + L+ N
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQL-----KSVPDGVFDRLTSLQYIWLHDN 215
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 9e-13
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 30/198 (15%)
Query: 168 TLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT--GPIPSTIGFLNLLDELRLSHNRLD 225
L ++ + + L ++D ++ N +++ I L + L L N+L
Sbjct: 23 KANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLH 76
Query: 226 GPIPPTIG---NLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-G 281
I LT LT L L+ NQL L L L L L N L +P +
Sbjct: 77 -----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFD 130
Query: 282 YLTNLTSLNLGYNQLNSSIPPELMNC-SQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDL 339
LTNLT LNL +NQL S+P + + + L L +++N L S+P + L L+ L L
Sbjct: 131 KLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRL 188
Query: 340 SHNFINGTIPSQLGKIPN 357
N QL +P+
Sbjct: 189 YQN--------QLKSVPD 198
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 239 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 298
+L ++ + + L +D + + +++ I YL N+ L LG N+L+
Sbjct: 22 IKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD 77
Query: 299 SIPPELMNCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHN 342
L + L L + N L S+P+ + L +L++L L N
Sbjct: 78 --ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVEN 119
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 3e-13
Identities = 57/392 (14%), Positives = 117/392 (29%), Gaps = 39/392 (9%)
Query: 17 CFPNLVTFRIWGTRFLSGR-IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRD----LL 71
F N + S + + LK LDL + + + D L+
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187
Query: 72 ELNLSY---NILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL--- 125
LN+S + ++ +L L+L + + + L L
Sbjct: 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247
Query: 126 ---NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP-LP 181
+ L + K L L + + +P+ ++L+TL L+Y + L
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307
Query: 182 KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPT---------- 231
K + L L + + L ELR+ + P
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367
Query: 232 IGNLTYLTSLDLSSNQLSGLLPREVG-NLKYLDSLSLDRNNLIGPIPPTIG--------- 281
L S+ Q++ + N + L P T+
Sbjct: 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427
Query: 282 --YLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG-SIPSEIGNLIHLRQLD 338
+ +L L+L + +++ L+V S + + LR+L+
Sbjct: 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487
Query: 339 LSH-NFINGTIPSQLGKIPNVSEVDVSKNNLS 369
+ F + + + K+ + + +S ++S
Sbjct: 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVS 519
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 4e-12
Identities = 59/352 (16%), Positives = 107/352 (30%), Gaps = 42/352 (11%)
Query: 10 LSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRD 69
L LN +C + V+F L R P+ LK L L+ + + +
Sbjct: 186 LVSLNISCLASEVSFSAL--ERLVTRCPN-------LKSLKLNRAVPLEKLATLLQRAPQ 236
Query: 70 LLELNLSY------NILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDL 123
L EL + + + K+L L + + +P+ + LT L+L
Sbjct: 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL 296
Query: 124 SLNQLSGR-LPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPK 182
S + L + + L L++ + + L L + + P
Sbjct: 297 SYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356
Query: 183 E----------VGNLKNLDSLLLNRNNLTGPIPSTIGF-LNLLDELRLSHNRLDGPIPPT 231
L+S+L +T TI + RL P T
Sbjct: 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416
Query: 232 IGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNL 291
+ LD+ + V + K L LSL Y + L++
Sbjct: 417 LE------PLDIGFGAI-------VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSV 463
Query: 292 GYNQL-NSSIPPELMNCSQLQNLAVNHNSLSG-SIPSEIGNLIHLRQLDLSH 341
+ + + L C L+ L + ++ + L +R L +S
Sbjct: 464 AFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 46/294 (15%), Positives = 93/294 (31%), Gaps = 46/294 (15%)
Query: 65 GSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD-GLIPSSIGNLTNLTHLDL 123
R + + Y + ++ F ++ + +L+ + + D L+P G
Sbjct: 42 RWCRRKVFIGNCYAVSPATVIRRFPKVRSV-ELKGKPHFADFNLVPDGWGGYVYPW---- 96
Query: 124 SLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTL-YHLNQLSTLYLAYNNLVGP--L 180
+ +S L + L +T + L L+ L
Sbjct: 97 -IEAMSSSYT-------WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL 148
Query: 181 PKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTS 240
+NL L L +++ + T L S
Sbjct: 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHF--------------------PDTYTSLVS 188
Query: 241 LDLS--SNQLSGL-LPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGY---- 293
L++S ++++S L R V L SL L+R + + + L L G
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248
Query: 294 --NQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
+ S + L C +L+ L+ +++ +P+ L L+LS+ +
Sbjct: 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-13
Identities = 44/142 (30%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IP++T LDL N L L L +L L N L F L L
Sbjct: 26 IPAQT------TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTG 154
L L N+L L LT L L L+ NQL LP V L L L L N L
Sbjct: 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS 138
Query: 155 PIPSTLY-HLNQLSTLYLAYNN 175
+P ++ L L ++L ++N
Sbjct: 139 -VPDGVFDRLTSLQYIWL-HDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 4e-12
Identities = 50/152 (32%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 50 DLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIP 109
+ T ++P+ I + L+L N L F L L L L GNKL L
Sbjct: 13 ECYSQGRT-SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69
Query: 110 SSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLY-HLNQLS 167
LT+LT+L+LS NQL LP V L L L L+ N L +P ++ L QL
Sbjct: 70 GVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLK 127
Query: 168 TLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRN 198
L L N L +P V L +L + L+ N
Sbjct: 128 DLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG 274
L L N L LT LT L L N+L L L L L+L N L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-Q 89
Query: 275 PIPPTI-GYLTNLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSGSIPSEI-GNL 331
+P + LT L L L NQL S+P + + +QL++L + N L S+P + L
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRL 147
Query: 332 IHLRQLDLSHN 342
L+ + L N
Sbjct: 148 TSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 6e-08
Identities = 40/134 (29%), Positives = 49/134 (36%), Gaps = 27/134 (20%)
Query: 169 LYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPI 228
L L N+L L +L L L N L L L L LS N+L +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-L 91
Query: 229 PPTI-GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLT 287
P + LT L L L++NQL LP V D+ LT L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQS-LPDGV----------FDK-------------LTQLK 127
Query: 288 SLNLGYNQLNSSIP 301
L L NQL S+P
Sbjct: 128 DLRLYQNQL-KSVP 140
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQ 100
L+ L L+LS N+L ++P+ + L L EL L+ N L S+P F L L DLRL
Sbjct: 75 LTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLY 132
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQ 127
N+L + LT+L ++ L N
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDNP 159
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 5e-13
Identities = 54/339 (15%), Positives = 108/339 (31%), Gaps = 63/339 (18%)
Query: 68 RDLLELNLSYNILNG----SIPLEFGNLKDLYDLRLQGNKL--DG--LIPSSIGNLTNLT 119
+ +L + + S+ + ++ L GN + + + +I + +L
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 120 HLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL--- 176
+ S + L+ L+ L L T+ L+ N
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH--------------TVRLSDNAFGPT 109
Query: 177 -VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNL 235
PL + L+ L L+ N L + L+ P
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGL-----GPQAGAKIARALQELAVNKKAKNAPP---- 160
Query: 236 TYLTSLDLSSNQLSG----LLPREVGNLKYLDSLSLDRNNLIGP------IPPTIGYLTN 285
L S+ N+L + + + L ++ + +N I P + + Y
Sbjct: 161 --LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQE 217
Query: 286 LTSLNLGYNQLN----SSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLI------HLR 335
L L+L N S++ L + L+ L +N LS + + + L+
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277
Query: 336 QLDLSHNFINGTIPSQLG-----KIPNVSEVDVSKNNLS 369
L L +N I L K+P++ ++++ N S
Sbjct: 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 39/241 (16%), Positives = 69/241 (28%), Gaps = 53/241 (21%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSL----RDLLELNLSYN-------------ILNGSIPL 86
+L + LS N T + L L L N + ++
Sbjct: 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153
Query: 87 EFGNLKDLYDLRLQGNKLDG----LIPSSIGNLTNLTHLDLSLNQL-----SGRLPQEVG 137
+ N L + N+L+ + + L + + N + L + +
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213
Query: 138 NLKNLVSLFLDNNNLTGP----IPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSL 193
+ L L L +N T + L L L L L G +
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-----SARG-AAAVVDA 267
Query: 194 LLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIG-----NLTYLTSLDLSSNQL 248
N+ L LRL +N ++ T+ + L L+L+ N+
Sbjct: 268 FSKLENIG------------LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
Query: 249 S 249
S
Sbjct: 316 S 316
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-12
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDG 106
V+ S L +P I D+ EL L N +P E N K L + L N++
Sbjct: 13 TVVRCSNKGLK-VLPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST 68
Query: 107 LIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLY-HLN 164
L S N+T L L LS N+L +P LK+L L L N+++ +P + L+
Sbjct: 69 LSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLS 126
Query: 165 QLSTLYLAYNN 175
LS L + N
Sbjct: 127 ALSHLAI-GAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 8e-11
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
IP + EL L N+ +P + N +LT +DLS+N++S L + N+ L
Sbjct: 29 IPRDV------TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 264 SLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPELM-NCSQLQNLAVNHN 318
+L L N L IPP L +L L+L N + S +P + S L +LA+ N
Sbjct: 82 TLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLS 167
+P I ++T L L NQ + +P+E+ N K+L + L NN ++ + ++ QL
Sbjct: 25 LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 168 TLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNL 200
TL L+YN L +P LK+L L L+ N++
Sbjct: 82 TLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDI 114
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 26/116 (22%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
+P E L ++DLS NR++ T+ N S F N+ L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRIS-TLS-------------------NQS----FSNMTQLL 81
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNN 150
L L N+L + P + L +L L L N +S +P+ +L L L + N
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE--FGNLKDLYDLRLQGNKL 104
+D + L IP +I EL L+ N L I + FG L L L L+ N+L
Sbjct: 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQL 66
Query: 105 DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHL 163
G+ P++ +++ L L N++ + ++ L L +L L +N ++ +P + HL
Sbjct: 67 TGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 164 NQLSTLYLAYNN 175
N L++L L +N
Sbjct: 126 NSLTSLNL-ASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 215 DELRLSHNRLDGPIPPT--IGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
EL L+ N L I G L +L L+L NQL+G+ P ++ L L N +
Sbjct: 32 TELLLNDNELGR-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Query: 273 IGPIPPTI-GYLTNLTSLNLGYNQLNSSIPP 302
I + L L +LNL NQ+ S + P
Sbjct: 91 -KEISNKMFLGLHQLKTLNLYDNQI-SCVMP 119
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 191 DSLLLNRNNLTGPIPSTIGFLNL--LDELRLSHNRLDGPIPPTI-GNLTYLTSLDLSSNQ 247
LLLN N L I S F L L +L L N+L G I P +++ L L N+
Sbjct: 32 TELLLNDNELGR-ISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENK 89
Query: 248 LSGLLPREVGNLKYLDSLSLDRNNLIGPIPP-TIGYLTNLTSLNLGYNQLN 297
+ + + L L +L+L N + + P + +L +LTSLNL N N
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFN 139
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 26/109 (23%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L L L+L N+LT I F + +L+L N
Sbjct: 53 LPHLVKLELKRNQLT-GIEPNA-----------------------FEGASHIQELQLGEN 88
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNN 150
K+ + L L L+L NQ+S + +L +L SL L +N
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQL 166
IP I + T L L+ N+L + G L +LV L L N LTG P+ + +
Sbjct: 23 IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80
Query: 167 STLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLT 201
L L N + + ++ L L +L L N ++
Sbjct: 81 QELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQIS 115
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 3e-11
Identities = 37/117 (31%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDL 94
IPS L+L N+L L L +L+LS N + S+P F L L
Sbjct: 26 IPSSA------TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKL 78
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNN 150
L L NKL L LT L L L NQL +P + L +L ++L N
Sbjct: 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGP 155
L L+ NKL L LT LT L LS NQ+ LP V L L L+L N L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQS- 90
Query: 156 IPSTLY-HLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRN 198
+P+ ++ L QL L L N L L +L + L+ N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 33/96 (34%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
IPS+ L L N+L LT LT L LS NQ+ L L L
Sbjct: 26 IPSS------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79
Query: 264 SLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNS 298
L L N L +P + LT L L L NQL S
Sbjct: 80 ILYLHENKL-QSLPNGVFDKLTQLKELALDTNQLKS 114
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 144 SLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTG 202
L L++N L L QL+ L L+ N + LP V L L L L+ N L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQS 90
Query: 203 PIPSTIGFLNL--LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQ 247
+P+ + F L L EL L N+L LT L + L +N
Sbjct: 91 -LPNGV-FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQ 100
L++L L LS N++ ++P + L L L L N L S+P F L L +L L
Sbjct: 51 LTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQ 127
N+L + LT+L + L N
Sbjct: 109 TNQLKSVPDGIFDRLTSLQKIWLHTNP 135
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 65/351 (18%), Positives = 111/351 (31%), Gaps = 72/351 (20%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGS-LRD----LLELNLSYNIL--NGSIPLEFG---NLKD 93
+ LDLS N L E+ + + LNLS N L S L +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 94 LYDLRLQGNKLD-----GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNL-----KNLV 143
+ L L GN L L+ + +T LDL N S + E ++
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141
Query: 144 SLFLDNNNLTGP----IPSTLYHLN-QLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRN 198
SL L N+L + L + +++L L NNL L L +
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-----ASKN-CAELAKFLASIP 195
Query: 199 -NLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIG-----NLTYLTSLDLSSNQLSG-- 250
++T L LS N L + ++ SL+L N L G
Sbjct: 196 ASVT--------------SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241
Query: 251 --LLPREVGNLKYLDSLSLDRNNL--IGP-----IPPTIGYLTNLTSLNLGYNQLNSSIP 301
L +LK+L ++ LD + + + + + + ++ +++ S
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301
Query: 302 PELMNCSQLQNLAVNHNSLSGSIPSEIG----------NLIHLRQLDLSHN 342
+ N + + + SL LR+ +
Sbjct: 302 IPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 56/310 (18%), Positives = 94/310 (30%), Gaps = 72/310 (23%)
Query: 107 LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----NLKNLVSLFLDNNNLTGP----IP 157
+ +T LDLSLN L E+ ++ SL L N+L +
Sbjct: 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72
Query: 158 STLYHLN-QLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDE 216
L + +++L L+ N L + L L T +
Sbjct: 73 QILAAIPANVTSLNLSGNFL------SYKSSDEL-VKTLAAIPFT------------ITV 113
Query: 217 LRLSHNRLDGPIPPTIGNL-----TYLTSLDLSSNQ--------LSGLLPREVGNLKYLD 263
L L N +TSL+L N L +L N+ L+
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173
Query: 264 SLSLDRNNLIGPIPPTIGYL--------TNLTSLNLGYNQLNSSIPPEL-----MNCSQL 310
L N + L ++TSL+L N L EL + +
Sbjct: 174 -LR---GNNLASK--NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227
Query: 311 QNLAVNHNSLSGSIPSEIGNLI----HLRQLDLSHNFINGT-------IPSQLGKIPNVS 359
+L + N L G + L HL+ + L ++ + + + I +
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287
Query: 360 EVDVSKNNLS 369
VD + +
Sbjct: 288 LVDKNGKEIH 297
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 49/248 (19%), Positives = 78/248 (31%), Gaps = 45/248 (18%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSL-----RDLLELNLSYNILNG------SIPLEFGNLK 92
+ VLDL +N + SE + LNL N L L
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168
Query: 93 DLYDLRLQGNKLD-----GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----NLKNL 142
+ L L+GN L L ++T LDLS N L + E+ ++
Sbjct: 169 -VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227
Query: 143 VSLFLDNNNLTGP----IPSTLYHLNQLSTLYLAYNNL-------VGPLPKEVGNLKNLD 191
VSL L N L GP + L L T+YL Y+ + L N++ +
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287
Query: 192 SLLLNRNNLTGP-----------IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTS 240
+ N + + +LL++ + + I + L
Sbjct: 288 LVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIE-DLNIPDELRE 346
Query: 241 LDLSSNQL 248
+ L
Sbjct: 347 SIQTCKPL 354
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 4e-11
Identities = 100/627 (15%), Positives = 176/627 (28%), Gaps = 190/627 (30%)
Query: 31 FLSGRIPSETGALSRLKVLDLSY-NRLTG----------TIPSEIGSLRD-LLELNLSYN 78
FL I +E S + + + +RL + LR LLEL + N
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 79 I-LNGSIPLEFGN----LKDLYDLRLQGNKLDGLIPSSIGN----------LTNLTH-LD 122
+ ++G L G L ++Q + ++ N L L + +D
Sbjct: 153 VLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 123 LSLNQL---SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP 179
+ S + + +++ + L + + N L LV
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----------YENCL---------LV-- 249
Query: 180 LPKEVGNLKNLDS-------LLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI 232
L V N K ++ LL R + L +H LD
Sbjct: 250 L-LNVQNAKAWNAFNLSCKILLTTRF---------KQVTDFLSAATTTHISLDHHSMT-- 297
Query: 233 GNLTYLTSLDLSSNQLS---GLLPREV--GNLKYLDSLSLDRNNLIG----PIPPTIGYL 283
LT L L LPREV N L ++I T
Sbjct: 298 --LTPDEVKSLLLKYLDCRPQDLPREVLTTNP-----RRL---SIIAESIRDGLATWDNW 347
Query: 284 TNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQL--DLSH 341
++ ++L + I S L L P+E R++ LS
Sbjct: 348 -----KHVNCDKLTTIIE------SSLNVLE----------PAE------YRKMFDRLS- 379
Query: 342 NFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVENPVISENAP 401
V IP + L W + V+++
Sbjct: 380 ----------------VFPPSAH-------IPTILL---SLIWFDVIKSDVMVVVNK--- 410
Query: 402 PPQTQHFKG--NKGKNQKIVTPLVTIILPMVAF--LALIFGILFVHRRMDEKINPNTREM 457
H K + TI +P + + +HR + + N
Sbjct: 411 ----LHKYSLVEKQPKES------TISIPSIYLELKVKLENEYALHRSIVDHYNIPK--- 457
Query: 458 KKCADEFSIWDYDGRITFEEMIQATEDFHIKY---CIGTGGYGSVYRAQLSSGRVVALKK 514
+D+ D + HI + I +++R R + +K
Sbjct: 458 TFDSDDLIPPYLDQYF-Y---------SHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QK 506
Query: 515 LHRSETEELAFLETSST--DFRHYNSH-TDNDDSSDEHLANNEHFLSAPE-NYERVDFSP 570
+ T A +T + Y + DND + + FL E N ++
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 571 DFSIADQSKKGFKLLADRKYRKSYYQR 597
IA ++ + + +++ QR
Sbjct: 567 LLRIALMAEDEA--IFEEAHKQV--QR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 8e-10
Identities = 92/615 (14%), Positives = 162/615 (26%), Gaps = 212/615 (34%)
Query: 120 HLDLSLNQLSGRLPQEVGNLKNLVSLFLDN--NNLTGPIPSTLYHLNQLSTLYLA---YN 174
H+D + + K+++S+F D +N + + L+ +
Sbjct: 6 HMDFETGE------HQYQY-KDILSVFEDAFVDNFD------CKDVQDMPKSILSKEEID 52
Query: 175 NLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIP----- 229
+++ G L+ +LL + + F+ + LR+++ L PI
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQK------FVE--EVLRINYKFLMSPIKTEQRQ 104
Query: 230 PTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSL-----SLDRNNLI------GPIPP 278
P++ Y+ D N V L+ L L + G
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG---- 160
Query: 279 TIG--YLTNLTS---------------LNLGYNQLNSSIPPELMNCSQLQNLAV----NH 317
G ++ LNL N + P ++ LQ L N
Sbjct: 161 -SGKTWVALDVCLSYKVQCKMDFKIFWLNLK----NCNSPETVLE--MLQKLLYQIDPNW 213
Query: 318 NSL---SGSIPSEIGNLI-HLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSK-------- 365
S S +I I ++ LR+L S + N L + NV
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LLVLLNVQNAKAWNAFNLSCKI 268
Query: 366 ----------NNLSGVIPKSVF---RVPGLKWSENNLEVENPVISENAP--PPQTQHFKG 410
+ LS + L E + + P +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPREVL--TT 325
Query: 411 NKGKNQKIVTPLVTIILPMVAFLALIFGIL--FVHR----------RMDEKI-------N 451
N P L++I + + ++ I
Sbjct: 326 N---------PRR---------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 452 PNTREMKKCADEFSIWDYDGRIT------------FEEMIQATEDFHIKYCIGTGGYGSV 499
P E +K D S++ I +++ H + S
Sbjct: 368 PA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 500 YR----AQLSSGRVVALKKLHRSETEELAFLETSSTDFRHYNSHT--DNDDSSD------ 547
++ LHRS ++ HYN D+DD
Sbjct: 426 ISIPSIYLELKVKLENEYALHRS------IVD-------HYNIPKTFDSDDLIPPYLDQY 472
Query: 548 --EHLANNEHFLSAPENYERVDFSP----DFSIADQ-----------SKKGFKLLAD-RK 589
H+ H L E+ ER+ DF +Q S L +
Sbjct: 473 FYSHIG---HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 590 YRK------SYYQRL 598
Y+ Y+RL
Sbjct: 530 YKPYICDNDPKYERL 544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 7e-11
Identities = 54/324 (16%), Positives = 96/324 (29%), Gaps = 33/324 (10%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L + + + + + +L E + +P ++ NL L G
Sbjct: 219 CRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277
Query: 103 KL--DGLIPSSIGNLTNLTHLDLS-LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
+P + LDL + + NL L N +
Sbjct: 278 SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337
Query: 160 LYHLNQLSTLYLAYNNLVGPLPKEVG------------NLKNLDSLLLNRNNLTGPIPST 207
+ QL L + + E G + L+ + + +++T +
Sbjct: 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397
Query: 208 IGF-LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266
IG L L + RL + +T DL + L L+
Sbjct: 398 IGTYLKNLCDFRLVL----------LDREERIT--DLPLDNGVRSLLIGCKKLRRFA-FY 444
Query: 267 LDRNNLIGPIPPTIG-YLTNLTSLNLGYNQL-NSSIPPELMNCSQLQNLAVNHNSLS-GS 323
L + L IG Y N+ + LGY + + C LQ L + S +
Sbjct: 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504
Query: 324 IPSEIGNLIHLRQLDLSHNFINGT 347
I + + L LR L + + T
Sbjct: 505 IAAAVTKLPSLRYLWVQGYRASMT 528
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 45/328 (13%), Positives = 91/328 (27%), Gaps = 37/328 (11%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
L+ L L ++ +L+ N + + NL+ L + +
Sbjct: 73 PNLRSLKLKGKPRA--------AMFNLIPENWGGYVTPWVTEI-SNNLRQLKSVHFRRMI 123
Query: 104 L--DGLIPSSIGNLTNLTHLDLSL-NQLSGRLPQEVG-NLKNLVSLFLDNNNLTGPIPST 159
+ L + +L L L + + + + + + +L ++ ++ +
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183
Query: 160 LYHL----NQLSTLYLAYNNLVG----PLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFL 211
L+ L L L L N ++L S+ + + +
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA 242
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL--LPREVGNLKYLDSLSLDR 269
L+E D +P NL + L G +P + L L
Sbjct: 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY 302
Query: 270 NNLIGP-IPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEI 328
L I NL L + + C QL+ L + + + E
Sbjct: 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362
Query: 329 G------------NLIHLRQLDLSHNFI 344
G L + + + I
Sbjct: 363 GLVSQRGLIALAQGCQELEYMAVYVSDI 390
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 8e-08
Identities = 48/316 (15%), Positives = 98/316 (31%), Gaps = 51/316 (16%)
Query: 36 IPSETGALSRLKVLDLSYNRL-TGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94
+P ++++ LDL Y L T + I +L L I + + + K L
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLT- 153
LR++ + + G ++ L L+ + L + + +++T
Sbjct: 345 KRLRIERGADEQGMEDEEGLVS-----QRGLIALA-------QGCQELEYMAVYVSDITN 392
Query: 154 ---GPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVG---------NLKNLDSLLLNRNNLT 201
I + L +L + L + LP + G L+ L + LT
Sbjct: 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA-FYLRQGGLT 451
Query: 202 GPIPSTIG-FLNLLDELRLSHNRL-DGPIPPTIGNLTYLTSLDLSSNQLSGL-LPREVGN 258
S IG + + + L + D + L L++ S + V
Sbjct: 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511
Query: 259 LKYLDSLSLDRNNLIGPIPPTIG---------YLTNLTSLNLGYNQL--NSSIPPELMNC 307
L L L + ++ N+ + E+ +
Sbjct: 512 LPSLRYLWVQGYRA------SMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHP 565
Query: 308 SQLQNLAVNHNSLSGS 323
+ + + + SL+G
Sbjct: 566 AHI----LAYYSLAGQ 577
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 34/320 (10%), Positives = 84/320 (26%), Gaps = 55/320 (17%)
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLS---------------LNQLSGRLPQEVGNLKNLVSL 145
NL L L ++ + + NL+ L S+
Sbjct: 58 ALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSV 117
Query: 146 FLDNNNLT--------GPIPSTLYHLN--------------------QLSTLYLAYNNL- 176
++ L L ++ TL + ++
Sbjct: 118 HFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177
Query: 177 ------VGPLPKEVGNLKNLDSLLLNRNNLTGP-IPSTIGFLNLLDELRLSHNRL--DGP 227
+ L + +L+ L+ + ++ + + L +++ +
Sbjct: 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG 237
Query: 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLT 287
NL L+ + + + L L L +P + +
Sbjct: 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIR 296
Query: 288 SLNLGYNQLNSSIPPELM-NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFING 346
L+L Y L + L+ C L+ L + + L++L +
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQ 356
Query: 347 TIPSQLGKIPNVSEVDVSKN 366
+ + G + + +++
Sbjct: 357 GMEDEEGLVSQRGLIALAQG 376
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 7e-11
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Query: 54 NRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQGNKLDGLIPSSI 112
+ +L EL + + L L +L +L + + L + P +
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 113 GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLT 153
L+ L+LS N L L + +L L L N L
Sbjct: 77 HFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 8e-11
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 221 HNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDRNNLIGPIPP- 278
+ LT L + + Q L L L +L++ + + + P
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPD 74
Query: 279 TIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSL 320
+ L+ LNL +N L S+ + + LQ L ++ N L
Sbjct: 75 AFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 9e-11
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQL 166
+ NLT L + Q L L L +L + + L P + +L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 167 STLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT 201
S L L++N L L + +L L+L+ N L
Sbjct: 83 SRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 9e-09
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Query: 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPS-TLYHLNQLSTLYLAYNNLVGPLPKE 183
+ + +NL L+++N + L L +L L + + L P
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 184 VGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD 225
L L L+ N L T+ L+L EL LS N L
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQ-ELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 2e-08
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 276 IPPTIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLSGSIPSEI-GNLIH 333
+ NLT L + Q + L +L+NL + + L + +
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81
Query: 334 LRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNL 368
L +L+LS N + ++ + + ++ E+ +S N L
Sbjct: 82 LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 1e-07
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 181 PKEVGNLKNLDSLLLNRNNLTGPIPS-TIGFLNLLDELRLSHNRLDGPIPP-TIGNLTYL 238
+ +NL L + + + L L L + + L + P L
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL 82
Query: 239 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
+ L+LS N L L + V L L L L N L
Sbjct: 83 SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 472 RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRS 518
R+ ++ +AT +F K+ IG G +G VY+ L G VALK+
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE 74
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 472 RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKL 515
R + E+ A+++F K +G GG+G VY+ +L+ G +VA+K+L
Sbjct: 19 RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRL 62
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-09
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 49 LDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLI 108
++ RL ++P+ I + D L L+ N + P F +L +L L NKL +
Sbjct: 17 VNCQNIRLA-SVPAGIPT--DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 109 PSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNN 150
LT LT LDL+ N L +P+ NLK+L ++L NN
Sbjct: 74 TGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 9e-07
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGP 155
L L N++ L P +L NL L + N+L+ +P V L L L L++N+L
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKS- 95
Query: 156 IPSTLY-HLNQLSTLYLAYNN 175
IP + +L L+ +YL YNN
Sbjct: 96 IPRGAFDNLKSLTHIYL-YNN 115
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 31/98 (31%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
IP+ L L++N++ P +L L L +SN+L+ +P V
Sbjct: 31 IPTD------KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGV------- 76
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP 301
D+ LT LT L+L N L SIP
Sbjct: 77 ---FDK-------------LTQLTQLDLNDNHL-KSIP 97
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQG 101
R + LDL ++ I + +L ++ S N + L+ F L+ L L +
Sbjct: 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLLVNN 73
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV---GNLKNLVSLFLDNNNLT 153
N++ + L +LT L L+ N L ++ +LK+L L + N +T
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVT 126
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 7e-08
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 22/138 (15%)
Query: 73 LNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNL----TNLTHLDLSLNQL 128
+ L+ ++ + ++ N +L L+G K+ I NL +D S N++
Sbjct: 2 VKLTAELIEQA--AQYTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEI 54
Query: 129 SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL-----VGPLPKE 183
+L L+ L +L ++NN + L L+ L L N+L + PL
Sbjct: 55 R-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL--- 109
Query: 184 VGNLKNLDSLLLNRNNLT 201
+LK+L L + RN +T
Sbjct: 110 -ASLKSLTYLCILRNPVT 126
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 6/128 (4%)
Query: 48 VLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGL 107
++ L+ + ++ + EL+L + I L + N++ L
Sbjct: 1 MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL 57
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGP-IPSTLYHLNQL 166
L L L ++ N++ L +L L L NN+L L L L
Sbjct: 58 --DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115
Query: 167 STLYLAYN 174
+ L + N
Sbjct: 116 TYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 12/114 (10%)
Query: 186 NLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGN---LTYLTSLD 242
N L L + I + L+ D + S N + + L L +L
Sbjct: 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRLKTLL 70
Query: 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNL--IGPIPPTIGYLTNLTSLNLGYN 294
+++N++ + L L L L N+L +G + P + L +LT L + N
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 9e-06
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 241 LDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI 300
+ L++ + + N L L R I I L +++ N++ +
Sbjct: 2 VKLTAELIEQAA--QYTNAVRDRELDL-RGYKIPVIENLGATLDQFDAIDFSDNEI-RKL 57
Query: 301 PPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
+L+ L VN+N + L L +L L++N +
Sbjct: 58 DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 19/179 (10%)
Query: 86 LEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSL 145
+ + + +L ++ + +++ L HL LS N + ++ + ++NL L
Sbjct: 20 VVATEAEKV-ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRIL 75
Query: 146 FLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIP 205
L N + I + + L L+++YN + + L NL L ++ N +T
Sbjct: 76 SLGRNLIKK-IENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGE 132
Query: 206 -STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
+ L+ L++L L+ N L Y ++ LP NLK LD
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR-------IEVVKRLP----NLKKLD 180
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 35 RIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94
++ + L K L LS N + I S + + +L L+L N++ L+ L
Sbjct: 39 KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKKIENLD-AVADTL 95
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV---GNLKNLVSLFLDNNN 151
+L + N++ L S I L NL L +S N+++ E+ L L L L N
Sbjct: 96 EELWISYNQIASL--SGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNP 151
Query: 152 LT 153
L
Sbjct: 152 LY 153
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 6/133 (4%)
Query: 238 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLD-RNNLIGPIPPTIGYLTNLTSLNLGYNQL 296
+ + + R+ + + L I + T+ L L L N +
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60
Query: 297 NSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIP 356
I L L+ L++ N + I + L +L +S+N I S + K+
Sbjct: 61 -EKISS-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLV 115
Query: 357 NVSEVDVSKNNLS 369
N+ + +S N ++
Sbjct: 116 NLRVLYMSNNKIT 128
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 47/238 (19%), Positives = 80/238 (33%), Gaps = 13/238 (5%)
Query: 9 ELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLR 68
+ + + + + S+L+ L L RL+ I + +
Sbjct: 83 DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142
Query: 69 DLLELNLSY--NILNGSIPLEFGNLKDLYDLRLQGNKL---DGLIPSSIGNLTNLTHLDL 123
+L+ LNLS ++ + L +L L + + +T L+L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202
Query: 124 S--LNQLSGR-LPQEVGNLKNLVSLFL-DNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP 179
S L L V NLV L L D+ L + LN L L L+ + P
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262
Query: 180 L-PKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLT 236
E+G + L +L + G + L L+++ + PTIGN
Sbjct: 263 ETLLELGEIPTLKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKK 317
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 55/300 (18%), Positives = 100/300 (33%), Gaps = 40/300 (13%)
Query: 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDG 106
+ LDL+ L + + + ++ + ++ + F + +
Sbjct: 50 QTLDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 108
Query: 107 LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQL 166
+ + + L +L L +LS + + NLV L NL+G + + L L
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL-----NLSGCSGFSEFALQTL 163
Query: 167 STLYLAYNNLVGPLPKEVGNLKNLDSLLLNR-NNLT--GPIPSTIGFLNLLDELRLSHNR 223
+ + LD L L+ + T + + +L LS R
Sbjct: 164 LS-----------------SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206
Query: 224 L---DGPIPPTIGNLTYLTSLDLSS-NQLSGLLPREVGNLKYLDSLSLDRNNLIGPI-PP 278
+ + L LDLS L +E L YL LSL R I P
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266
Query: 279 TIGYLTNLTSLNLGYNQLNSSIP------PEL-MNCSQLQNLAVNHNSLSGSIPSEIGNL 331
+G + L +L + + ++ P L +NCS +A ++ EI +
Sbjct: 267 ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIAR--PTIGNKKNQEIWGI 324
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-05
Identities = 54/263 (20%), Positives = 92/263 (34%), Gaps = 16/263 (6%)
Query: 115 LTNLTHLDL-SLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAY 173
+ L +L ++ + R + + +L L NL + L ++
Sbjct: 21 FSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIA-FRCPR 79
Query: 174 NNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIG 233
+ + PL + + L N + + + L L L RL PI T+
Sbjct: 80 SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139
Query: 234 NLTYLTSLDLSSNQLSGL----LPREVGNLKYLDSLSLDRNNLIGPIPPTI---GYLTNL 286
+ L L+LS SG L + + LD L+L + +
Sbjct: 140 KNSNLVRLNLSG--CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197
Query: 287 TSLNL-GYNQL--NSSIPPELMNCSQLQNLAVNH-NSLSGSIPSEIGNLIHLRQLDLSH- 341
T LNL GY + S + + C L +L ++ L E L +L+ L LS
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257
Query: 342 NFINGTIPSQLGKIPNVSEVDVS 364
I +LG+IP + + V
Sbjct: 258 YDIIPETLLELGEIPTLKTLQVF 280
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 51/249 (20%), Positives = 82/249 (32%), Gaps = 34/249 (13%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS-GRLPQEVGNLKNLVSLFLDNNNLTGP 155
R + +D + + H+DLS + + L + L +L L+ L+ P
Sbjct: 75 FRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP 133
Query: 156 IPSTLYHLNQLSTLYLAYNNLV--GPLPKEVGNLKNLDSLLLNR-NNLT--GPIPSTIGF 210
I +TL + L L L+ + L + + LD L L+ + T +
Sbjct: 134 IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193
Query: 211 LNLLDELRLSHNRL---DGPIPPTIGNLTYLTSLDLSS-NQLSGLLPREVGNLKYLDSLS 266
+ +L LS R + + L LDLS L +E L YL LS
Sbjct: 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253
Query: 267 LDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPS 326
L R ++ L L L+ L V G++
Sbjct: 254 LSRC-------------YDIIPETLLE----------LGEIPTLKTLQVFGIVPDGTLQL 290
Query: 327 EIGNLIHLR 335
L HL+
Sbjct: 291 LKEALPHLQ 299
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 51.9 bits (123), Expect = 3e-07
Identities = 22/164 (13%), Positives = 55/164 (33%), Gaps = 20/164 (12%)
Query: 210 FLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVG-----NLKYLDS 264
L+ + L + + L SL++ S L + ++ NL+ L
Sbjct: 167 VLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV- 225
Query: 265 LSLDRNNLIGPIPPTI-------GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAV-- 315
L + + + NL L + + + + + L L
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285
Query: 316 -NHNSLSGS----IPSEIGNLIHLRQLDLSHNFINGTIPSQLGK 354
+ L+ + + + HL+ +++ +N+++ + +L K
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 50.0 bits (118), Expect = 1e-06
Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 17/160 (10%)
Query: 58 GTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTN 117
+ + ++ L L + NLK L ++ G + +L N
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL-EIISGGLPDSVVEDILGSDLPN 220
Query: 118 LTHLDLSL---NQLSGRLPQEV------GNLKNLVSLFLDNNNLTGPIPSTLYH---LNQ 165
L L L + + NL L + + + L Q
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280
Query: 166 LSTLYLAYNNL----VGPLPKEVGNLKNLDSLLLNRNNLT 201
L T+ ++ L L V +K+L + + N L+
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 49.2 bits (116), Expect = 2e-06
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 18/130 (13%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIGS-----LRDL-LELNLSYNILNGSIP-----LEFGN 90
LK L++ L ++ +I L L L + + +G +
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGN---LTNLTHLDLSLNQLSGR----LPQEVGNLKNLV 143
+L L + + ++ L L +D+S L+ L V +K+L
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310
Query: 144 SLFLDNNNLT 153
+ + N L+
Sbjct: 311 FINMKYNYLS 320
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 66 SLRDLLELNLSYN-ILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124
+ D+ EL L + G + ++L L L + +++ L L L+LS
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72
Query: 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGP-IPSTLYHLNQLSTLYLAYN 174
N++SG L NL L L N + L L L +L L
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Query: 12 QLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLL 71
+L ++ + +R G++ T L+ L LT +I + + L L
Sbjct: 10 ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLK 67
Query: 72 ELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLN 126
+L LS N ++G + + +L L L GNK+ L + L NL LDL
Sbjct: 68 KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 40/161 (24%)
Query: 114 NLTNLTHLDLSLNQLS-GRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLA 172
+++ L L ++ + G+L + L L N LT + L LN+L L L+
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72
Query: 173 YNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI 232
N + G L NL L L+ N I L+ ++ L+
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNK--------IKDLSTIEPLK-------------- 110
Query: 233 GNLTYLTSLDLSSNQLS----------GLLPREVGNLKYLD 263
L L SLDL + +++ LLP L YLD
Sbjct: 111 -KLENLKSLDLFNCEVTNLNDYRENVFKLLP----QLTYLD 146
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 186 NLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNL---TYLTSLD 242
++K L L N + G + L+ L + L +I NL L L+
Sbjct: 18 DVKELV--LDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLE 70
Query: 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNL--IGPIPPTIGYLTNLTSLNLGYN 294
LS N++SG L L L+L N + + I P + L NL SL+L
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 258 NLKYLDSLSLD-RNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVN 316
+ L LD + G + L L+ L +SI L ++L+ L ++
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIAN-LPKLNKLKKLELS 72
Query: 317 HNSLSGSIPSEIGNLIHLRQLDLSHNFING-TIPSQLGKIPNVSEVDVSKN 366
N +SG + +L L+LS N I + L K+ N+ +D+
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYN-ILNGSIPLEFGNLKDLYDLRLQG 101
L++LK L+LS NR++G + +L LNLS N I + S L++L L L
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
Query: 102 N---KLDGLIPSSIGNLTNLTHLD 122
L+ + L LT+LD
Sbjct: 123 CEVTNLNDYRENVFKLLPQLTYLD 146
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 473 ITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAF 525
+ E + + + G +G V++AQL VA+K + +
Sbjct: 14 LGTENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDKQSWQN 65
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 6e-07
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 32/116 (27%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IP+ T +VL L N++T + + F L L
Sbjct: 28 IPTTT------QVLYLYDNQIT-KLEPGV-----------------------FDRLTQLT 57
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNN 150
L L N+L L LT LT L L+ NQL +P+ NLK+L ++L NN
Sbjct: 58 RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 6e-07
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGP 155
L L N++ L P LT LT LDL NQL+ LP V L L L L++N L
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKS- 92
Query: 156 IPSTLY-HLNQLSTLYLAYNN 175
IP + +L L+ ++L NN
Sbjct: 93 IPRGAFDNLKSLTHIWL-LNN 112
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLY-HLNQ 165
+P+ I T L L NQ++ +L V L L L LDNN LT +P+ ++ L Q
Sbjct: 24 VPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQ 79
Query: 166 LSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRN 198
L+ L L N L +P+ NLK+L + L N
Sbjct: 80 LTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 33/98 (33%), Positives = 40/98 (40%), Gaps = 31/98 (31%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
IP+T L L N++ P LT LT LDL +NQL+ LP V
Sbjct: 28 IPTT------TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGV------- 73
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP 301
D+ LT LT L+L NQL SIP
Sbjct: 74 ---FDK-------------LTQLTQLSLNDNQL-KSIP 94
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 9e-07
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Query: 66 SLRDLLELNLSYNILN-GSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124
+ + EL L N G I +L L L L + S++ L L L+LS
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79
Query: 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGP-IPSTLYHLNQLSTLYLAYN 174
N++ G L L NL L L N L L L L +L L
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 39/161 (24%), Positives = 57/161 (35%), Gaps = 40/161 (24%)
Query: 114 NLTNLTHLDLSLNQLS-GRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLA 172
+ L L + + G++ NL L L N L S L L +L L L+
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELS 79
Query: 173 YNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI 232
N + G L L NL L L+ N + ++ L+ L+
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNK--------LKDISTLEPLK-------------- 117
Query: 233 GNLTYLTSLDLSSNQLS----------GLLPREVGNLKYLD 263
L L SLDL + +++ LLP L YLD
Sbjct: 118 -KLECLKSLDLFNCEVTNLNDYRESVFKLLP----QLTYLD 153
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 7e-06
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 13/120 (10%)
Query: 182 KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNL---TYL 238
+ ++ L L N + G I L+ L L + L ++ NL L
Sbjct: 21 RTPAAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKL 73
Query: 239 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL--IGPIPPTIGYLTNLTSLNLGYNQL 296
L+LS N++ G L L L L+L N L I + P + L L SL+L ++
Sbjct: 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEV 132
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 8e-06
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 258 NLKYLDSLSLD-RNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVN 316
+ L LD + G I NL L+L L S+ L +L+ L ++
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSN-LPKLPKLKKLELS 79
Query: 317 HNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
N + G + L +L L+LS N +
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 2 DNNGNAAELSQLNFTCFPNLVTFRIWGTRFLS-GRIPSETGALSRLKVLDLSYNRLTGTI 60
DN + + F NL + +S +P L +LK L+LS NR+ G +
Sbjct: 32 DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKLELSENRIFGGL 87
Query: 61 PSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQGN---KLDGLIPSSIGNLT 116
L +L LNLS N L LE L+ L L L L+ S L
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147
Query: 117 NLTHLD 122
LT+LD
Sbjct: 148 QLTYLD 153
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 473 ITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
E ++ + IG G YG+VY+ L R VA+K + +
Sbjct: 3 AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQN 51
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSS-GRVVALKKLHRSETEELAFLETSSTDFRH 535
+ + IG GG+G V++ +L VVA+K L ++E + +F+
Sbjct: 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQR 72
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 472 RITFEEMIQATEDFHIKYC------IGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
+F E+ T +F + +G GG+G VY+ + + VA+KKL
Sbjct: 14 SFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDIT 69
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 47/288 (16%), Positives = 84/288 (29%), Gaps = 69/288 (23%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
LS L+ L+L+ R+T P + + +L L ++ L
Sbjct: 70 VLSSLRQLNLAGVRMT---PVKCTVVAAVLGSGR----------------HALDEVNLAS 110
Query: 102 NKLDG-----LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----NLKNLVSLFLDNNN 151
+LD L+P L L LN L +++ + + +L L NN
Sbjct: 111 CQLDPAGLRTLLPV----FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166
Query: 152 LTGP----IPSTLYHLNQLSTLYLAYNNL----VGPLPKEVGNLKNLDSLLLNRNNLTGP 203
LT + L ++ L L + L + L ++ + L L + N
Sbjct: 167 LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226
Query: 204 ----IPSTIGFLNLLDELRLSHNRLD-------GPIPPTIGNLTYLTSLDLSSNQLS--- 249
+ L+ L L N L + + +S
Sbjct: 227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286
Query: 250 -GLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQL 296
+L NL D + R+ L +L ++
Sbjct: 287 SVILSEVQRNLNSWDRARVQRH-------------LELLLRDLEDSRG 321
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
+ I IG+GG V++ ++ A+K ++ E +
Sbjct: 28 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN 67
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEEL 523
+ + +G GG+ V + L G ALK++ E ++
Sbjct: 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDR 70
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 491 IGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLETSSTDFR 534
IG G YG+VY+A+ SG VALK + R + R
Sbjct: 17 IGVGAYGTVYKARDPHSGHFVALKSV-RVPNGGGGGGGLPISTVR 60
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
+ I IG+GG V++ ++ A+K ++ E +
Sbjct: 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN 48
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 491 IGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
IG G YG VY+AQ + G ALKK+ R E E+
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKI-RLEKED 40
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 485 FHIKYCIGTGGYGSVYRA--QLSSGRVVALKKLHRSETEE 522
+ +K CI GG G +Y A + +GR V LK L S E
Sbjct: 82 YEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAE 121
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
+ I IG+GG V++ ++ A+K ++ E +
Sbjct: 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN 95
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
F + +G G YG VY+ + + +G++ A+K + + EE
Sbjct: 23 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE 64
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 491 IGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
+G G YG VY+A+ S GR+VALK++ R + E+
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRI-RLDAED 59
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
DF +G G +G V +A+ R A+KK+ +E +
Sbjct: 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKL 46
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 482 TEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKK--LHRSETEELAFLETSSTDFRHYN 537
+ +G G +G V+R + +G A+KK L EEL
Sbjct: 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACA----GLSSPR 111
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 483 EDFHIKYCIGTGGYGSVYRA-QLSSGRVVALK--KLHRSETE 521
+D+ ++ IG+G V A VA+K L + +T
Sbjct: 15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTS 56
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLE--TSSTDFRHYN 537
++ ++ +G G +G V +A+ + VA+K++ SE+E AF+ + H N
Sbjct: 8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQI-ESESERKAFIVELRQLSRVNHPN 62
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+ IG G +G V++A+ +G+ VALKK+ E E+
Sbjct: 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKV-LMENEK 56
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN 537
E ++ +G G +G V+ + VA+K L AFL+ + RH
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 323
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 479 IQATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+ ++ F +G G Y +VY+ ++G VALK++ + ++EE
Sbjct: 1 MSSSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEV-KLDSEE 44
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
E F IG G +G V++ + +VVA+K + E E+
Sbjct: 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAED 62
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN 537
E ++ +G G +G V+ + VA+K L AFL+ + RH
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 240
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 6/92 (6%)
Query: 442 VHRRMDEKINPNTREMKKCADEFSI----WDYDGRITFEEMI-QATEDFHIKYCIGTGGY 496
+ R+ + T E + A + + W+ E + + +G
Sbjct: 32 LFNRIPQANVRTTSEYMQSAADSLVSTSLWNTGQPFRVESELGERPRTLVRGTVLGQEDP 91
Query: 497 GSVYRA-QLSSGRVVALKKLHRSETEELAFLE 527
+ A +G + + +E ++
Sbjct: 92 YAYLEATDQETGESFEVHVPYFTERPPSNAIK 123
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN 537
E ++ +G G +G V+ A + VA+K + AFL ++ +H
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDK 244
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
DF C+G GG+G V+ A+ A+K++ E
Sbjct: 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNREL 45
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSE 519
EDF I +G G +G+VY A+ S ++ALK L +++
Sbjct: 9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQ 46
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 491 IGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+G G YG V + + +GR+VA+KK S+ ++
Sbjct: 33 VGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDK 65
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 599 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.98 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.9 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.9 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.9 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.9 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.88 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.88 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.87 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.86 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.86 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.85 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.84 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.84 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.84 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.81 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.8 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.79 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.79 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.79 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.79 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.79 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.79 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.78 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.78 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.78 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.77 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.77 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.77 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.77 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.77 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.76 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.76 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.75 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.75 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.74 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.74 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.73 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.73 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.73 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.73 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.72 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.71 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.7 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.69 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.68 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.68 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.68 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.68 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.68 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.67 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.67 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.67 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.66 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.65 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.65 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.64 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.64 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.64 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.64 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.62 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.62 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.62 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.62 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.62 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.61 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.6 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.6 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.6 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.6 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.6 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.6 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.6 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.6 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.6 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.59 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.59 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.59 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.59 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.59 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.58 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.58 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.58 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.57 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.57 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.57 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.57 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.57 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.57 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.57 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.57 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.57 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.56 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.56 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.56 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.56 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.56 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.56 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.56 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.56 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.55 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.55 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.55 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.55 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.55 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.55 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.54 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.54 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 99.54 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.54 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.54 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.54 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.54 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.54 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.53 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.53 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.53 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.53 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.53 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.53 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.53 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.53 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.53 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.53 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.53 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.52 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.52 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.52 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.52 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.52 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.52 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.52 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.52 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.52 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.52 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.52 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.51 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.51 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.51 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.51 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.51 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.51 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.51 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.51 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.51 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.51 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.51 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.51 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.51 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.51 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.51 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.51 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.51 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.51 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.51 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.5 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.5 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.5 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.5 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.5 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 99.5 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.5 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.5 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.5 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.5 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.5 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.5 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.5 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.5 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.5 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.49 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.49 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.49 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.49 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.49 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.49 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.49 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.49 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.49 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.49 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.49 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.48 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.48 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.48 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.48 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.48 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.48 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.48 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.48 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.48 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.48 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.48 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.47 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.47 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.47 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.47 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.47 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.47 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.47 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.47 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.47 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.46 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.46 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.46 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.46 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.46 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.46 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.46 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.46 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.46 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.46 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.46 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.46 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.46 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.46 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.46 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.46 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.46 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.45 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.45 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.45 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.45 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.45 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.45 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.45 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.45 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.45 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.45 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.45 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.45 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.45 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.45 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.45 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.44 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.44 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.44 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.44 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.44 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.44 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.44 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.44 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.44 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.44 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.44 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.44 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.44 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.44 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.44 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.44 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.44 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.44 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.43 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.43 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.43 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.43 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.43 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.43 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.43 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.43 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.43 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.43 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.43 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.42 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.42 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.42 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.42 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.42 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.42 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.42 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.41 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.41 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.41 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.41 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.41 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.41 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.41 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.41 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.4 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 99.4 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.4 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.4 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.4 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.4 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.4 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.39 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.39 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.39 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.38 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.38 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.38 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.38 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.38 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 99.36 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.36 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.36 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.35 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.35 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.34 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.34 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 99.34 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.31 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.3 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.29 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.27 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 99.27 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.26 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.2 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.19 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.16 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.16 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 99.15 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.15 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 98.98 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.97 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.95 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.48 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.45 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.35 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.33 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.24 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.21 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.3 | |
| 3tm0_A | 263 | Aminoglycoside 3'-phosphotransferase; protein kina | 97.3 | |
| 1nd4_A | 264 | Aminoglycoside 3'-phosphotransferase; protein kina | 97.23 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.22 | |
| 3dxp_A | 359 | Putative acyl-COA dehydrogenase; protein kinase-li | 96.84 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.5 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.35 | |
| 3d1u_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 96.08 | |
| 2ks1_B | 44 | Epidermal growth factor receptor; ERBB1, ERBB2, tr | 93.68 | |
| 3sg8_A | 304 | APH(2'')-ID; antibiotic resistance enzyme, transfe | 92.47 | |
| 3r70_A | 320 | Aminoglycoside phosphotransferase; structural geno | 91.59 | |
| 2l2t_A | 44 | Receptor tyrosine-protein kinase ERBB-4; transmemb | 88.86 | |
| 2jwa_A | 44 | Receptor tyrosine-protein kinase ERBB-2; transmemb | 88.37 | |
| 3tdw_A | 306 | Gentamicin resistance protein; kinase, phosphoryl | 85.07 | |
| 2olc_A | 397 | MTR kinase, methylthioribose kinase; kinase ADP-2H | 85.03 | |
| 3f7w_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 82.09 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=441.68 Aligned_cols=392 Identities=34% Similarity=0.525 Sum_probs=299.4
Q ss_pred CCCcEEeeCCCCCCeecCCcccCC-CCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCcc-CCCCCCCcE
Q 007553 19 PNLVTFRIWGTRFLSGRIPSETGA-LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYD 96 (599)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~ 96 (599)
++|++|++++ |.+.+.+|+.+.. +++|++|++++|.+++.+|..|+.+++|++|++++|.+++.+|.. |.++++|++
T Consensus 269 ~~L~~L~L~~-n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 269 KSLQYLSLAE-NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp TTCCEEECCS-SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred CCCCEEECcC-CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 3333444433 3334444444433 255555555555555455555555555555555555555444433 455555555
Q ss_pred EEeecCcCCccCCccccCCC-cCCEEeeecccccccCCccccC--CCcccEEecccCccCCCCcccccCCCCCCeeeccc
Q 007553 97 LRLQGNKLDGLIPSSIGNLT-NLTHLDLSLNQLSGRLPQEVGN--LKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAY 173 (599)
Q Consensus 97 L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~--l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 173 (599)
|++++|++.+.+|..+..++ +|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence 55555555544555555544 5555555555555555554444 66788888888888778888888899999999999
Q ss_pred ccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCC
Q 007553 174 NNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLP 253 (599)
Q Consensus 174 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 253 (599)
|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 99988888889999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccC-----------------------------
Q 007553 254 REVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPEL----------------------------- 304 (599)
Q Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~----------------------------- 304 (599)
.+++.+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++.+.+|..+
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999999998887766533
Q ss_pred -----------------------------------------cCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCcc
Q 007553 305 -----------------------------------------MNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNF 343 (599)
Q Consensus 305 -----------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 343 (599)
..+++|+.|++++|.++|.+|..++.++.|+.|++++|+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 335678999999999999999999999999999999999
Q ss_pred ccccCCcccCCCCCCCEEECCCCcCcccCCccCCC---CCeeecccCccceeCCCCCCCCCCCCcccccCCC
Q 007553 344 INGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR---VPGLKWSENNLEVENPVISENAPPPQTQHFKGNK 412 (599)
Q Consensus 344 l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---~~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (599)
++|.+|..++.++.|+.||+++|.++|.+|..+.. +..+++++|++.|.+|.. ..+.......+.||+
T Consensus 668 l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP 738 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence 99999999999999999999999999999987654 478899999999999843 223344445566665
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=433.09 Aligned_cols=385 Identities=36% Similarity=0.548 Sum_probs=345.8
Q ss_pred ccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcC-CCCCCCCCEEeccCCcccccCCcc
Q 007553 9 ELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSE-IGSLRDLLELNLSYNILNGSIPLE 87 (599)
Q Consensus 9 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~ 87 (599)
.++..-...+++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|.. +..+++|++|++++|.+++.+|..
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSG-NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCS-SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred ccCHHHHhhcCcCCEEECcC-CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 45544444469999999998 8999999999999999999999999998888865 899999999999999999899999
Q ss_pred CCCCC-CCcEEEeecCcCCccCCccccC--CCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCC
Q 007553 88 FGNLK-DLYDLRLQGNKLDGLIPSSIGN--LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLN 164 (599)
Q Consensus 88 ~~~l~-~L~~L~L~~n~~~~~~~~~~~~--l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 164 (599)
+.+++ +|++|++++|++.+.+|..+.. +++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..++
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC
Confidence 98887 9999999999998888877776 88999999999999988999999999999999999999999999999999
Q ss_pred CCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEcc
Q 007553 165 QLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLS 244 (599)
Q Consensus 165 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 244 (599)
+|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.++..+++|++|+++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 99999999999998899999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCcccCCCCCCCEEeccCcceeecCCcC---------------------------------------------
Q 007553 245 SNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPT--------------------------------------------- 279 (599)
Q Consensus 245 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------------------------------------------- 279 (599)
+|.+++.+|..+..+++|+.|++++|.+.|.+|..
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 99999999999999999999999999988776653
Q ss_pred -------------------------ccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCC
Q 007553 280 -------------------------IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHL 334 (599)
Q Consensus 280 -------------------------~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 334 (599)
+..+++|+.|++++|++++.+|..+..+++|+.|+|++|.++|.+|..++.+++|
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L 682 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence 3335789999999999999999999999999999999999999999999999999
Q ss_pred CEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCcc--CCCCCeeecccCccceeCC
Q 007553 335 RQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKS--VFRVPGLKWSENNLEVENP 394 (599)
Q Consensus 335 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~--~~~~~~l~~~~n~~~~~~~ 394 (599)
+.|++++|+++|.+|..+..++.|+.||+++|+++|.+|.. +..+....+.+|+.-+..|
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 99999999999999999999999999999999999999964 3334555666776544443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=386.02 Aligned_cols=387 Identities=20% Similarity=0.195 Sum_probs=231.3
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS 83 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 83 (599)
.+.+..++..+|+++++|++|++++ |.+.+..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++.
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l 120 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred CCccCcCChhHhccCccceEEECCC-CccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence 4567778778888899999999988 888888888888899999999999988888888888889999999999988876
Q ss_pred CCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCccc--EEecccCccCCCCccc--
Q 007553 84 IPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLV--SLFLDNNNLTGPIPST-- 159 (599)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~--~L~l~~n~i~~~~~~~-- 159 (599)
.|..|.++++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+.++++|+ +|++++|.+++..|..
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence 677788888888888888888865434455588888888888888877677777777777 6677776665443332
Q ss_pred -------------------------------------------------------------------------ccCCCCC
Q 007553 160 -------------------------------------------------------------------------LYHLNQL 166 (599)
Q Consensus 160 -------------------------------------------------------------------------l~~l~~L 166 (599)
|..+++|
T Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 280 (606)
T 3t6q_A 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280 (606)
T ss_dssp TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence 3344444
Q ss_pred CeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcc-cCCCCCCCCEEEccC
Q 007553 167 STLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP-TIGNLTYLTSLDLSS 245 (599)
Q Consensus 167 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 245 (599)
++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.++. .+..+++|++|++++
T Consensus 281 ~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp SEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred CEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 44555444444 3344444445555555555544444444444444444444444444433322 244445555555555
Q ss_pred CcCCCCC--CcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCcc-CcCCCCCCEEEcccCcCcc
Q 007553 246 NQLSGLL--PREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLSG 322 (599)
Q Consensus 246 n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~ 322 (599)
|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence 5444332 334444555555555555554444444444555555555555544433322 4444555555555555544
Q ss_pred CCCccccCCCCCCEEeCCCcccccc---CCcccCCCCCCCEEECCCCcCcccCCccCCC---CCeeecccCcccee
Q 007553 323 SIPSEIGNLIHLRQLDLSHNFINGT---IPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR---VPGLKWSENNLEVE 392 (599)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---~~~l~~~~n~~~~~ 392 (599)
..|..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+++..|..+.. ++.+++++|++.+.
T Consensus 440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 4444444455555555555554431 1133444455555555555555444433322 24444455544443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=384.67 Aligned_cols=407 Identities=21% Similarity=0.173 Sum_probs=345.9
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS 83 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 83 (599)
.+.+..+....|+++++|++|++++ |.+.+..|..++++++|++|++++|.+++..+..++.+++|++|++++|.+++.
T Consensus 66 ~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 66 RCQIYWIHEDTFQSQHRLDTLVLTA-NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTT-CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred CCccceeChhhccCccccCeeeCCC-CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence 4567788888899999999999998 899988899999999999999999999977678899999999999999999875
Q ss_pred CCccCCCCCCCcEEEeecCcCCccCCccccCCCcCC--EEeeeccccccc------------------------------
Q 007553 84 IPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLT--HLDLSLNQLSGR------------------------------ 131 (599)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~--~L~l~~n~i~~~------------------------------ 131 (599)
.+..+..+++|++|++++|.+.+..|..|+.+++|+ .|++++|.+.+.
T Consensus 145 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 224 (606)
T 3t6q_A 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224 (606)
T ss_dssp CCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTT
T ss_pred CcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccc
Confidence 545555699999999999998877777777777777 666666655433
Q ss_pred ---------------------------------------------CCccccCCCcccEEecccCccCCCCcccccCCCCC
Q 007553 132 ---------------------------------------------LPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQL 166 (599)
Q Consensus 132 ---------------------------------------------~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L 166 (599)
.+..+.++++|++|++++|.++ .+|..+..+++|
T Consensus 225 ~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L 303 (606)
T 3t6q_A 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303 (606)
T ss_dssp CEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTC
T ss_pred cchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccC
Confidence 3344777899999999999998 678889999999
Q ss_pred CeeecccccccccCccccCCCCCCCEEEccCCcccccCch-hccCCCCCCEEeCCCCcCcccC--cccCCCCCCCCEEEc
Q 007553 167 STLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPS-TIGFLNLLDELRLSHNRLDGPI--PPTIGNLTYLTSLDL 243 (599)
Q Consensus 167 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l 243 (599)
++|++++|.+.+..+..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|.+.+.. +..+..+++|++|++
T Consensus 304 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp CEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred CEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence 9999999999988888999999999999999998866654 5889999999999999998765 678999999999999
Q ss_pred cCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcC-ccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCcc
Q 007553 244 SSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPT-IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322 (599)
Q Consensus 244 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 322 (599)
++|.+.+..|..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 999999888999999999999999999999876544 8899999999999999998888899999999999999999986
Q ss_pred C---CCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCCCCC--eeecccCccceeCCCCC
Q 007553 323 S---IPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVP--GLKWSENNLEVENPVIS 397 (599)
Q Consensus 323 ~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~--~l~~~~n~~~~~~~~~~ 397 (599)
. .+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..++ .+++++|.+.+..|...
T Consensus 464 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLL 543 (606)
T ss_dssp GEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGH
T ss_pred cccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhc
Confidence 2 335788999999999999999998899999999999999999999999888776654 56778998886554211
Q ss_pred CCCCCCCcccccCCC
Q 007553 398 ENAPPPQTQHFKGNK 412 (599)
Q Consensus 398 ~~~~~~~~~~~~~~~ 412 (599)
...+......+.+|+
T Consensus 544 ~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 544 PILSQQRTINLRQNP 558 (606)
T ss_dssp HHHHTSSEEECTTCC
T ss_pred ccCCCCCEEeCCCCC
Confidence 122233444455555
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=390.55 Aligned_cols=322 Identities=23% Similarity=0.356 Sum_probs=182.2
Q ss_pred CCcCCCCCCCCCEEeccCCccccc-----------------CCccCC--CCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 60 IPSEIGSLRDLLELNLSYNILNGS-----------------IPLEFG--NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 60 ~~~~~~~l~~L~~L~L~~n~~~~~-----------------~p~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
+|..++++++|++|+|++|.+++. +|..++ ++++|++|+|++|++.+.+|..|+++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 455556666666666666666653 555555 6666666666666666556666666666666
Q ss_pred Eeeeccc-ccc-cCCccccCC------CcccEEecccCccCCCCcc--cccCCCCCCeeecccccccccCccccCCCCCC
Q 007553 121 LDLSLNQ-LSG-RLPQEVGNL------KNLVSLFLDNNNLTGPIPS--TLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNL 190 (599)
Q Consensus 121 L~l~~n~-i~~-~~~~~l~~l------~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 190 (599)
|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .+..+++|++|++++|.+.+.+| .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 6666665 555 455555544 56666666666665 4555 56666666666666666655555 55555666
Q ss_pred CEEEccCCcccccCchhccCCCC-CCEEeCCCCcCcccCcccCCCCC--CCCEEEccCCcCCCCCCcccC-------CCC
Q 007553 191 DSLLLNRNNLTGPIPSTIGFLNL-LDELRLSHNRLDGPIPPTIGNLT--YLTSLDLSSNQLSGLLPREVG-------NLK 260 (599)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~l~-------~l~ 260 (599)
++|++++|.+. .+|..+..++. |+.|++++|.++ .+|..+..++ +|++|++++|.+.+..|..+. .++
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 66666666655 45555555555 666666666655 4555544433 566666666666655555555 455
Q ss_pred CCCEEeccCcceeecCCc-CccCCCCCCEEECCCCCCccCCCcc-CcCC-------CCCCEEEcccCcCccCCCcccc--
Q 007553 261 YLDSLSLDRNNLIGPIPP-TIGYLTNLTSLNLGYNQLNSSIPPE-LMNC-------SQLQNLAVNHNSLSGSIPSEIG-- 329 (599)
Q Consensus 261 ~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~ls~n~~~~~~~~~-~~~l-------~~L~~L~l~~n~l~~~~~~~~~-- 329 (599)
+|+.|+|++|.+. .+|. .+..+++|++|++++|.++ .+|.. +... ++|+.|++++|.++ .+|..+.
T Consensus 434 ~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 510 (636)
T 4eco_A 434 NVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT 510 (636)
T ss_dssp CEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT
T ss_pred CCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc
Confidence 5666666666655 2332 2334556666666666655 33322 2211 15666666666655 4455444
Q ss_pred CCCCCCEEeCCCccccccCCcccCCCCCCCEEEC------CCCcCcccCCccCCC---CCeeecccCcc
Q 007553 330 NLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDV------SKNNLSGVIPKSVFR---VPGLKWSENNL 389 (599)
Q Consensus 330 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l------s~n~l~~~~~~~~~~---~~~l~~~~n~~ 389 (599)
.+++|+.|++++|++++ +|..+..+++|+.|++ ++|.+.+.+|..+.. ++.+++++|.+
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 55666666666666654 5555555566666665 334455555544332 35555555555
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=397.01 Aligned_cols=385 Identities=24% Similarity=0.268 Sum_probs=259.9
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecC-CcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRI-PSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNG 82 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 82 (599)
.|.+..+...+|+++++|++|++++ +...+.+ |..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++
T Consensus 33 ~N~i~~i~~~~~~~l~~L~~LdLs~-n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 33 FNYIRTVTASSFPFLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp SCCCCEECSSSCSSCCSCSEEEECT-TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred CCcCCccChhHCcccccCeEEeCCC-CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 3566777777888888888888887 6555555 6678888888888888888887778888888888888888888887
Q ss_pred cCCcc--CCCCCCCcEEEeecCcCCccCC-ccccCCCcCCEEeeecccccccCCccccCC--CcccEEecccCccCCCCc
Q 007553 83 SIPLE--FGNLKDLYDLRLQGNKLDGLIP-SSIGNLTNLTHLDLSLNQLSGRLPQEVGNL--KNLVSLFLDNNNLTGPIP 157 (599)
Q Consensus 83 ~~p~~--~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l--~~L~~L~l~~n~i~~~~~ 157 (599)
..|.. |.++++|++|+|++|.+.+..+ ..|+++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+
T Consensus 112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence 55554 7888888888888888876644 568888888888888888876666655544 444444444444433322
Q ss_pred ccccCC--------------------------------------------------------------------CCCCee
Q 007553 158 STLYHL--------------------------------------------------------------------NQLSTL 169 (599)
Q Consensus 158 ~~l~~l--------------------------------------------------------------------~~L~~L 169 (599)
..+..+ ++|++|
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 222221 456666
Q ss_pred ecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCC
Q 007553 170 YLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLS 249 (599)
Q Consensus 170 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 249 (599)
++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC
Confidence 66666666666666777777777777777777666777777777777777777777666777777777777777777777
Q ss_pred CCCCcccCCCCCCCEEeccCcceeecC------------------Cc----------------------CccCCCCCCEE
Q 007553 250 GLLPREVGNLKYLDSLSLDRNNLIGPI------------------PP----------------------TIGYLTNLTSL 289 (599)
Q Consensus 250 ~~~~~~l~~l~~L~~L~L~~n~l~~~~------------------~~----------------------~~~~~~~L~~L 289 (599)
+..+..|..+++|+.|+|++|.+++.. |. .+..+++|++|
T Consensus 352 ~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L 431 (844)
T 3j0a_A 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431 (844)
T ss_dssp CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEE
T ss_pred ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCcccee
Confidence 666666777777777777777665310 00 01244555666
Q ss_pred ECCCCCCccCCC------------------------------ccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeC
Q 007553 290 NLGYNQLNSSIP------------------------------PELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339 (599)
Q Consensus 290 ~ls~n~~~~~~~------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 339 (599)
++++|++++..+ ..+..+++|+.|+|++|.+++..|..+..+++|+.|++
T Consensus 432 ~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 511 (844)
T 3j0a_A 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511 (844)
T ss_dssp EEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEE
T ss_pred eCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeEC
Confidence 666555543211 22344455555666666665555555666666666666
Q ss_pred CCccccccCCcccCCCCCCCEEECCCCcCcccCCccCCCCCeeecccCccce
Q 007553 340 SHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEV 391 (599)
Q Consensus 340 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~l~~~~n~~~~ 391 (599)
++|++++..+..+. ++|+.|++++|.+++..|..+..+..+++++|++.+
T Consensus 512 s~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 512 NSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC 561 (844)
T ss_dssp ESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCC
T ss_pred CCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCccc
Confidence 66666655444443 566666777777776666666666777777777765
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-43 Score=380.98 Aligned_cols=402 Identities=21% Similarity=0.182 Sum_probs=290.0
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS 83 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 83 (599)
.+.+..++...|+++++|++|++++ |.+++..|..|+++++|++|+|++|.+++..|..|+++++|++|++++|.+++.
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 119 (606)
T 3vq2_A 41 FNPLKILKSYSFSNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCS
T ss_pred CCCcCEeChhhccCCccCcEEeCCC-CcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccc
Confidence 3556667777777888888888887 777777777777788888888888887766677777888888888888877766
Q ss_pred CCccCCCCCCCcEEEeecCcCCc-cCCccccCCCcCCEEeeecccccccCCccccCCCccc----EEecccCccCCCCcc
Q 007553 84 IPLEFGNLKDLYDLRLQGNKLDG-LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLV----SLFLDNNNLTGPIPS 158 (599)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~----~L~l~~n~i~~~~~~ 158 (599)
.+..|+++++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..+..+..+++|+ +|++++|.+++..+.
T Consensus 120 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcc
Confidence 66677778888888888887765 3577777788888888888777766665554444333 344444443322211
Q ss_pred c-------------------------------------------------------------------------------
Q 007553 159 T------------------------------------------------------------------------------- 159 (599)
Q Consensus 159 ~------------------------------------------------------------------------------- 159 (599)
.
T Consensus 200 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 279 (606)
T 3vq2_A 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279 (606)
T ss_dssp TTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred cccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence 1
Q ss_pred -----------------------ccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCE
Q 007553 160 -----------------------LYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDE 216 (599)
Q Consensus 160 -----------------------l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 216 (599)
+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|+.
T Consensus 280 ~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 354 (606)
T 3vq2_A 280 KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSY 354 (606)
T ss_dssp SCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCE
T ss_pred ccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCE
Confidence 22223333444444443 2233 22 4444555555544332222 4567788999
Q ss_pred EeCCCCcCccc--CcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCC-cCccCCCCCCEEECCC
Q 007553 217 LRLSHNRLDGP--IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIP-PTIGYLTNLTSLNLGY 293 (599)
Q Consensus 217 L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~ls~ 293 (599)
|++++|.+.+. .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 99999998865 36778889999999999999875 56788889999999999999988776 5788899999999999
Q ss_pred CCCccCCCccCcCCCCCCEEEcccCcCcc-CCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccC
Q 007553 294 NQLNSSIPPELMNCSQLQNLAVNHNSLSG-SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVI 372 (599)
Q Consensus 294 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 372 (599)
|.+.+..|..+..+++|+.|++++|.+++ .+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC
Confidence 99988888888899999999999999887 46788888999999999999999888888889999999999999999887
Q ss_pred CccCCC---CCeeecccCccceeCCCCCCCCC-CCCcccccCCCC
Q 007553 373 PKSVFR---VPGLKWSENNLEVENPVISENAP-PPQTQHFKGNKG 413 (599)
Q Consensus 373 ~~~~~~---~~~l~~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~ 413 (599)
|..+.. ++.+++++|++...++. ....+ ......+.+|+.
T Consensus 514 ~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp GGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCC
T ss_pred HHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCc
Confidence 876654 47888899988743332 11222 244455666654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=382.11 Aligned_cols=354 Identities=19% Similarity=0.278 Sum_probs=315.6
Q ss_pred CCeecCCcccCCCCCCCEEEcccCcCccc-----------------CCcCCC--CCCCCCEEeccCCcccccCCccCCCC
Q 007553 31 FLSGRIPSETGALSRLKVLDLSYNRLTGT-----------------IPSEIG--SLRDLLELNLSYNILNGSIPLEFGNL 91 (599)
Q Consensus 31 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~l 91 (599)
.+++ +|+.++++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|..|+++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3445 899999999999999999999975 999999 99999999999999999999999999
Q ss_pred CCCcEEEeecCc-CCc-cCCccccCC------CcCCEEeeecccccccCCc--cccCCCcccEEecccCccCCCCccccc
Q 007553 92 KDLYDLRLQGNK-LDG-LIPSSIGNL------TNLTHLDLSLNQLSGRLPQ--EVGNLKNLVSLFLDNNNLTGPIPSTLY 161 (599)
Q Consensus 92 ~~L~~L~L~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~l~ 161 (599)
++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++|.+++.+| .|.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999998 887 788888876 99999999999999 7887 89999999999999999998888 899
Q ss_pred CCCCCCeeecccccccccCccccCCCCC-CCEEEccCCcccccCchhccCCC--CCCEEeCCCCcCcccCcccCC-----
Q 007553 162 HLNQLSTLYLAYNNLVGPLPKEVGNLKN-LDSLLLNRNNLTGPIPSTIGFLN--LLDELRLSHNRLDGPIPPTIG----- 233 (599)
Q Consensus 162 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~----- 233 (599)
.+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..+. +|+.|++++|.+.+..|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 9999999999999998 77888999999 999999999998 7788777655 899999999999999988888
Q ss_pred --CCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCc-cCCC-------CCCEEECCCCCCccCCCcc
Q 007553 234 --NLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GYLT-------NLTSLNLGYNQLNSSIPPE 303 (599)
Q Consensus 234 --~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~-------~L~~L~ls~n~~~~~~~~~ 303 (599)
.+++|++|++++|.++...+..+..+++|+.|+|++|.++ .+|... .... +|++|++++|.++ .+|..
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 8889999999999999544445667999999999999998 555543 3232 9999999999998 67887
Q ss_pred Cc--CCCCCCEEEcccCcCccCCCccccCCCCCCEEeC------CCccccccCCcccCCCCCCCEEECCCCcCcccCCcc
Q 007553 304 LM--NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL------SHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKS 375 (599)
Q Consensus 304 ~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 375 (599)
+. .+++|+.|++++|.+++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|++++|.+ +.+|..
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 76 99999999999999997 8899999999999999 56888889999999999999999999999 566665
Q ss_pred C-CCCCeeecccCccceeC
Q 007553 376 V-FRVPGLKWSENNLEVEN 393 (599)
Q Consensus 376 ~-~~~~~l~~~~n~~~~~~ 393 (599)
+ ..+..+++++|++....
T Consensus 585 ~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 585 ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp CCTTCCEEECCSCTTCEEE
T ss_pred HhCcCCEEECcCCCCcccc
Confidence 4 45688999999887644
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=375.22 Aligned_cols=398 Identities=22% Similarity=0.176 Sum_probs=321.5
Q ss_pred CcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccC
Q 007553 5 GNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSI 84 (599)
Q Consensus 5 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 84 (599)
+.++++|.. + .+++++|++++ +.+++..+..|+++++|++|++++|.+++..|.+|+++++|++|+|++|.+++..
T Consensus 21 ~~l~~ip~~-~--~~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 21 QKLSKVPDD-I--PSSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp SCCSSCCTT-S--CTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred CCcccCCCC-C--CCCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC
Confidence 456666653 2 37899999999 9999888889999999999999999999888999999999999999999999888
Q ss_pred CccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccc-cCCccccCCCcccEEecccCccCCCCcccccCC
Q 007553 85 PLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG-RLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163 (599)
Q Consensus 85 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 163 (599)
|..|+++++|++|++++|++.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..|..+
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 9999999999999999999998877889999999999999999986 569999999999999999999998777766655
Q ss_pred CCCC----eeecccccccccCccc--------------------------------------------------------
Q 007553 164 NQLS----TLYLAYNNLVGPLPKE-------------------------------------------------------- 183 (599)
Q Consensus 164 ~~L~----~L~l~~n~~~~~~~~~-------------------------------------------------------- 183 (599)
++|+ +|++++|.+.+..+..
T Consensus 177 ~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp HHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred hccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 5443 5666665554332222
Q ss_pred ----------------------------------------------cCCCCCCCEEEccCCcccccCchhccCCCCCCEE
Q 007553 184 ----------------------------------------------VGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDEL 217 (599)
Q Consensus 184 ----------------------------------------------l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 217 (599)
+..+++|++|++++|.+ +.+| .+ .++.|+.|
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L 333 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSL 333 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEE
T ss_pred hhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCcccee
Confidence 22223344444444444 2333 22 44555555
Q ss_pred eCCCCcCcccCcccCCCCCCCCEEEccCCcCCCC--CCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCC
Q 007553 218 RLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL--LPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQ 295 (599)
Q Consensus 218 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 295 (599)
++++|...+.. .+..+++|++|++++|.+++. .|..+..+++|+.|++++|.+.+ +|..+..+++|++|++++|.
T Consensus 334 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 334 TLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred eccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence 55555333222 466889999999999999875 47888999999999999999885 56789999999999999999
Q ss_pred CccCCC-ccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccc-cCCcccCCCCCCCEEECCCCcCcccCC
Q 007553 296 LNSSIP-PELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFING-TIPSQLGKIPNVSEVDVSKNNLSGVIP 373 (599)
Q Consensus 296 ~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~ 373 (599)
+.+..| ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++..|
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 998877 678999999999999999999899999999999999999999997 478899999999999999999999988
Q ss_pred ccCCC---CCeeecccCccceeCCCCCCCCCCCCcccccCCC
Q 007553 374 KSVFR---VPGLKWSENNLEVENPVISENAPPPQTQHFKGNK 412 (599)
Q Consensus 374 ~~~~~---~~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (599)
..+.. ++.+++++|++.+..|......+........+|.
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 76654 5889999999988766333434444444455544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=382.64 Aligned_cols=321 Identities=22% Similarity=0.317 Sum_probs=186.7
Q ss_pred CCcCCCCCCCCCEEeccCCcccc-----------------cCCccCC--CCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 60 IPSEIGSLRDLLELNLSYNILNG-----------------SIPLEFG--NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 60 ~~~~~~~l~~L~~L~L~~n~~~~-----------------~~p~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
+|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|+++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 55556666666666666666665 2566655 6666666666666666666666666666666
Q ss_pred Eeeeccc-ccc-cCCccccCCC-------cccEEecccCccCCCCcc--cccCCCCCCeeecccccccccCccccCCCCC
Q 007553 121 LDLSLNQ-LSG-RLPQEVGNLK-------NLVSLFLDNNNLTGPIPS--TLYHLNQLSTLYLAYNNLVGPLPKEVGNLKN 189 (599)
Q Consensus 121 L~l~~n~-i~~-~~~~~l~~l~-------~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 189 (599)
|++++|+ +++ .+|..+..++ +|++|++++|.++ .+|. .|..+++|++|+|++|.+. .+| .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 6666665 555 4555444433 6666666666666 5555 5666666666666666666 455 5666666
Q ss_pred CCEEEccCCcccccCchhccCCCC-CCEEeCCCCcCcccCcccCCCCCC--CCEEEccCCcCCCCCCcc---cC--CCCC
Q 007553 190 LDSLLLNRNNLTGPIPSTIGFLNL-LDELRLSHNRLDGPIPPTIGNLTY--LTSLDLSSNQLSGLLPRE---VG--NLKY 261 (599)
Q Consensus 190 L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~---l~--~l~~ 261 (599)
|+.|++++|.+. .+|..+..++. |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|.. +. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 666666666666 55555666666 666666666665 55555554433 666666666665543321 11 2235
Q ss_pred CCEEeccCcceeecCCcCc-cCCCCCCEEECCCCCCccCCCccCcC--------CCCCCEEEcccCcCccCCCcccc--C
Q 007553 262 LDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPELMN--------CSQLQNLAVNHNSLSGSIPSEIG--N 330 (599)
Q Consensus 262 L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~ls~n~~~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~--~ 330 (599)
|+.|+|++|.+. .+|..+ ..+++|+.|+|++|.+. .+|..+.. +++|+.|+|++|.++ .+|..+. .
T Consensus 675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 666666666665 334332 35566666666666665 33332221 125666666666665 4555554 5
Q ss_pred CCCCCEEeCCCccccccCCcccCCCCCCCEEECCC------CcCcccCCccCCC---CCeeecccCcc
Q 007553 331 LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSK------NNLSGVIPKSVFR---VPGLKWSENNL 389 (599)
Q Consensus 331 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~------n~l~~~~~~~~~~---~~~l~~~~n~~ 389 (599)
+++|+.|++++|++++ +|..+..+++|+.|++++ |.+.+.+|..+.. ++.+++++|.+
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 6666666666666664 455555666666666644 4555555544432 35555666665
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-42 Score=360.05 Aligned_cols=366 Identities=20% Similarity=0.175 Sum_probs=317.3
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccC-CcCCCCCCCCCEEeccCCcccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTI-PSEIGSLRDLLELNLSYNILNG 82 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~ 82 (599)
++.++++|. + .++|++|++++ +.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|+|++|.+++
T Consensus 19 ~~~l~~lp~--l--~~~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 19 NRGLHQVPE--L--PAHVNYVDLSL-NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp SSCCSSCCC--C--CTTCCEEECCS-SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred CCCcccCCC--C--CCccCEEEecC-CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 345666666 3 27899999999 9999888999999999999999999987554 5679999999999999999998
Q ss_pred cCCccCCCCCCCcEEEeecCcCCccCCcc--ccCCCcCCEEeeecccccccCCcc-ccCCCcccEEecccCccCCCCccc
Q 007553 83 SIPLEFGNLKDLYDLRLQGNKLDGLIPSS--IGNLTNLTHLDLSLNQLSGRLPQE-VGNLKNLVSLFLDNNNLTGPIPST 159 (599)
Q Consensus 83 ~~p~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~l~~n~i~~~~~~~ 159 (599)
..|..|.++++|++|++++|++.+..+.. |..+++|++|++++|.+.+..|.. +.++++|++|++++|.+++..+..
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 88999999999999999999998755444 899999999999999999887766 899999999999999999888887
Q ss_pred ccCC--CCCCeeecccccccccCccc--------cCCCCCCCEEEccCCcccccCchhccCC---CCCCEEeCCCCcCcc
Q 007553 160 LYHL--NQLSTLYLAYNNLVGPLPKE--------VGNLKNLDSLLLNRNNLTGPIPSTIGFL---NLLDELRLSHNRLDG 226 (599)
Q Consensus 160 l~~l--~~L~~L~l~~n~~~~~~~~~--------l~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~l~~ 226 (599)
+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+... +.|+.|++++|...+
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 7766 68999999999988654433 3366899999999999988777666443 889999999886654
Q ss_pred cC----------cccCC--CCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCC
Q 007553 227 PI----------PPTIG--NLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYN 294 (599)
Q Consensus 227 ~~----------~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n 294 (599)
.. +..+. ..++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 31 11222 2368999999999999988999999999999999999999888889999999999999999
Q ss_pred CCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCc
Q 007553 295 QLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPK 374 (599)
Q Consensus 295 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 374 (599)
.+.+..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99988888899999999999999999988889999999999999999999977777788999999999999999998873
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=369.81 Aligned_cols=402 Identities=22% Similarity=0.229 Sum_probs=241.7
Q ss_pred CcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccC
Q 007553 5 GNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSI 84 (599)
Q Consensus 5 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 84 (599)
+.++.++..+|.++++|++|++++ +.+.+..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 38 NPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp CCCCEECTTTTTTCSSCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CccCccChhHhhCCCCceEEECCC-CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence 445556656666666666666666 5666555556666666666666666666555566666666666666666666544
Q ss_pred CccCCCCCCCcEEEeecCcCCcc-CCccccCCCcCCEEeeecccccccCCccccCCCcc----cEEecccCccCCCCccc
Q 007553 85 PLEFGNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL----VSLFLDNNNLTGPIPST 159 (599)
Q Consensus 85 p~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L----~~L~l~~n~i~~~~~~~ 159 (599)
+..|+++++|++|++++|.+.+. +|..|+++++|++|++++|.+.+..+..+..+++| +.|++++|.+.+..+..
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~ 196 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (570)
T ss_dssp TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHH
Confidence 44566666666666666666542 46666666666666666666665555555555555 55666655554433332
Q ss_pred ccCCCCCCeeecccc----------------------------------------------------------cccccCc
Q 007553 160 LYHLNQLSTLYLAYN----------------------------------------------------------NLVGPLP 181 (599)
Q Consensus 160 l~~l~~L~~L~l~~n----------------------------------------------------------~~~~~~~ 181 (599)
+... +|+.|++++| .+.+..+
T Consensus 197 ~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 275 (570)
T 2z63_A 197 FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275 (570)
T ss_dssp TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST
T ss_pred hccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch
Confidence 2221 2333332222 1111122
Q ss_pred cccCCCCCCCEEEccCCcccccCchhccC--------------------CCCCCEEeCCCCcCcccCcccCCCCCCCCEE
Q 007553 182 KEVGNLKNLDSLLLNRNNLTGPIPSTIGF--------------------LNLLDELRLSHNRLDGPIPPTIGNLTYLTSL 241 (599)
Q Consensus 182 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 241 (599)
..+..+++|++|++++|.+. .+|..+.. ++.|+.|++++|.+.+..+. ..+++|++|
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L 352 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFL 352 (570)
T ss_dssp TTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEE
T ss_pred hhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEE
Confidence 23333444444444444443 23333333 33444444444443333222 566777888
Q ss_pred EccCCcCCCCC--CcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCC-ccCcCCCCCCEEEcccC
Q 007553 242 DLSSNQLSGLL--PREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP-PELMNCSQLQNLAVNHN 318 (599)
Q Consensus 242 ~l~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~~~~l~~L~~L~l~~n 318 (599)
++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.|++++|
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred eCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 88877776543 55667777788888887777654433 7777777777777777776554 45677777777777777
Q ss_pred cCccCCCccccCCCCCCEEeCCCcccc-ccCCcccCCCCCCCEEECCCCcCcccCCccCCC---CCeeecccCccceeCC
Q 007553 319 SLSGSIPSEIGNLIHLRQLDLSHNFIN-GTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR---VPGLKWSENNLEVENP 394 (599)
Q Consensus 319 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---~~~l~~~~n~~~~~~~ 394 (599)
.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+.. ++.+++++|.+.+..+
T Consensus 432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 777777777777777777777777776 467777777777777777777777776665543 4667777777766554
Q ss_pred CCCCCCCCCCcccccCCC
Q 007553 395 VISENAPPPQTQHFKGNK 412 (599)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~ 412 (599)
......+......+.+|+
T Consensus 512 ~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 512 GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhhcccCCcEEEecCCc
Confidence 322333344444455554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-41 Score=369.70 Aligned_cols=387 Identities=22% Similarity=0.217 Sum_probs=225.3
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS 83 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 83 (599)
.+.+..++...|+++++|++|++++ +.+.+..|..++++++|++|+|++|.+++..+.+|+++++|++|+|++|.+++.
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCS-SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCC-CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc
Confidence 3556777777788888888888887 777777777778888888888888888755555688888888888888888766
Q ss_pred CCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCcccc--CCCcccEEecccCccCCCCccccc
Q 007553 84 IPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG--NLKNLVSLFLDNNNLTGPIPSTLY 161 (599)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~l~ 161 (599)
.|..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 192 (680)
T 1ziw_A 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192 (680)
T ss_dssp CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG
T ss_pred ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhh
Confidence 667788888888888888888777777777888888888888877766555443 456777777777777665554443
Q ss_pred CC---------------------------CCCCeeecccccccccCccccCCCCC--CCEEEccCCcccccCchhccCCC
Q 007553 162 HL---------------------------NQLSTLYLAYNNLVGPLPKEVGNLKN--LDSLLLNRNNLTGPIPSTIGFLN 212 (599)
Q Consensus 162 ~l---------------------------~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~~~~l~ 212 (599)
.+ ++|++|++++|.+.+..+..+..++. |++|++++|.+.+..+..+..++
T Consensus 193 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (680)
T 1ziw_A 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272 (680)
T ss_dssp GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcc
Confidence 32 23444444444444444444444432 55555555555554455555555
Q ss_pred CCCEEeCCCCcCcccCcccCCCC---------------------------------CCCCEEEccCCcCCCCCCcccCCC
Q 007553 213 LLDELRLSHNRLDGPIPPTIGNL---------------------------------TYLTSLDLSSNQLSGLLPREVGNL 259 (599)
Q Consensus 213 ~L~~L~l~~n~l~~~~~~~~~~l---------------------------------~~L~~L~l~~n~l~~~~~~~l~~l 259 (599)
+|+.|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 352 (680)
T 1ziw_A 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352 (680)
T ss_dssp TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC
T ss_pred cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc
Confidence 55555555555554444444444 444444444444444444444444
Q ss_pred CCCCEEeccCcceeec--CCcCccC--CCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCC-ccccCCCCC
Q 007553 260 KYLDSLSLDRNNLIGP--IPPTIGY--LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP-SEIGNLIHL 334 (599)
Q Consensus 260 ~~L~~L~L~~n~l~~~--~~~~~~~--~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 334 (599)
++|++|++++|.+... ....+.. .++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+| ..+.++++|
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L 432 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTC
T ss_pred cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccc
Confidence 4444444444332111 0011111 1234444444444444445555555555566665555554333 345555555
Q ss_pred CEEeCCCccccccCCcccCCCCCCCEEECCCCcCc--ccCCccCCC---CCeeecccCccce
Q 007553 335 RQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS--GVIPKSVFR---VPGLKWSENNLEV 391 (599)
Q Consensus 335 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~---~~~l~~~~n~~~~ 391 (599)
++|++++|++++..+..+..+++|+.|++++|.++ +..|..+.. ++.+++++|.+..
T Consensus 433 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 55555555555444444444444555555544443 223333322 2445555555543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=380.05 Aligned_cols=386 Identities=25% Similarity=0.273 Sum_probs=276.5
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccC-CcCCCCCCCCCEEeccCCcccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTI-PSEIGSLRDLLELNLSYNILNG 82 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~ 82 (599)
.++.+.+|. -.+++++|++++ |.+++..|..|..+++|++|+|++|.+.+.+ |.+|+++++|++|+|++|.+.+
T Consensus 13 ~~~L~~vP~----lp~~l~~LdLs~-N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 13 FCNLTQVPQ----VLNTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CCCSSCCCS----SCTTCCEEEEES-CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCCCC----CCCCcCEEECCC-CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 356677776 458999999999 9999889999999999999999999655455 7889999999999999999999
Q ss_pred cCCccCCCCCCCcEEEeecCcCCccCCcc--ccCCCcCCEEeeecccccccCC-ccccCCCcccEEecccCccCCCCccc
Q 007553 83 SIPLEFGNLKDLYDLRLQGNKLDGLIPSS--IGNLTNLTHLDLSLNQLSGRLP-QEVGNLKNLVSLFLDNNNLTGPIPST 159 (599)
Q Consensus 83 ~~p~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~ 159 (599)
..|..|.++++|++|+|++|.+.+..|.. |.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 99999999999999999999998766654 9999999999999999987754 57999999999999999999988888
Q ss_pred ccCC--CCCCeeecccccccccCccccCCCCC------CCEEEccCC---------------------------------
Q 007553 160 LYHL--NQLSTLYLAYNNLVGPLPKEVGNLKN------LDSLLLNRN--------------------------------- 198 (599)
Q Consensus 160 l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~l~~n--------------------------------- 198 (599)
+..+ ++|+.|+++.|.+.+..+..+..+++ |+.|++++|
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 8877 88999999998887766554444333 555555555
Q ss_pred -----------------------------cccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCC
Q 007553 199 -----------------------------NLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLS 249 (599)
Q Consensus 199 -----------------------------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 249 (599)
.+.+..+..+..++.|+.|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS
T ss_pred cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC
Confidence 444333444455555555555555555555555555555566666555555
Q ss_pred CCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCC------------------Cc---------
Q 007553 250 GLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI------------------PP--------- 302 (599)
Q Consensus 250 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~------------------~~--------- 302 (599)
+..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++.. |.
T Consensus 328 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ 407 (844)
T 3j0a_A 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407 (844)
T ss_dssp CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEE
T ss_pred ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceee
Confidence 555555555566666666666555444445555566666666555544210 00
Q ss_pred -------------cCcCCCCCCEEEcccCcCccCC------------------------------CccccCCCCCCEEeC
Q 007553 303 -------------ELMNCSQLQNLAVNHNSLSGSI------------------------------PSEIGNLIHLRQLDL 339 (599)
Q Consensus 303 -------------~~~~l~~L~~L~l~~n~l~~~~------------------------------~~~~~~l~~L~~L~l 339 (599)
.+..+++|+.|++++|.+++.. +..+..+++|+.|++
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 0113445555555555444211 123445566777777
Q ss_pred CCccccccCCcccCCCCCCCEEECCCCcCcccCCccCC-CCCeeecccCccceeCC
Q 007553 340 SHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF-RVPGLKWSENNLEVENP 394 (599)
Q Consensus 340 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~~l~~~~n~~~~~~~ 394 (599)
++|.+++..|..+..+++|+.|++++|.+++..+..+. .+..+++++|.+.+..|
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNP 543 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCS
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCCh
Confidence 77777767777777888888888888888877665543 45778888888877655
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=364.81 Aligned_cols=364 Identities=25% Similarity=0.271 Sum_probs=209.8
Q ss_pred CcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccC
Q 007553 5 GNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSI 84 (599)
Q Consensus 5 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 84 (599)
+.+..+....|+++++|++|++++ |.+++..+..|+.+++|++|++++|.+++..|..|+++++|++|++++|.+++..
T Consensus 59 n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 59 NTISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp SCCCCCCTTHHHHCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC
T ss_pred CccCccCHHHHhcccCcCEEECCC-CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC
Confidence 456667777778888888888887 7776444446778888888888888887666677888888888888888887777
Q ss_pred CccCCCCCCCcEEEeecCcCCccCCcccc--CCCcCCEEeeecccccccCCc----------------------------
Q 007553 85 PLEFGNLKDLYDLRLQGNKLDGLIPSSIG--NLTNLTHLDLSLNQLSGRLPQ---------------------------- 134 (599)
Q Consensus 85 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~l~~n~i~~~~~~---------------------------- 134 (599)
|..|.++++|++|++++|.+.+..+..+. .+++|++|++++|.+.+..|.
T Consensus 138 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 217 (680)
T 1ziw_A 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217 (680)
T ss_dssp CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHH
T ss_pred chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHH
Confidence 77777788888888888777665554433 345666666666655544443
Q ss_pred -----------------------cccCCCc--ccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCC
Q 007553 135 -----------------------EVGNLKN--LVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKN 189 (599)
Q Consensus 135 -----------------------~l~~l~~--L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 189 (599)
.+.+++. |++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++
T Consensus 218 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (680)
T 1ziw_A 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297 (680)
T ss_dssp HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT
T ss_pred HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCC
Confidence 3333322 666666666666555556666666666666666665554444444444
Q ss_pred CCEEEccCCcccc-----cCc----hhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEc-----------------
Q 007553 190 LDSLLLNRNNLTG-----PIP----STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDL----------------- 243 (599)
Q Consensus 190 L~~L~l~~n~~~~-----~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l----------------- 243 (599)
|++|++++|...+ .+| ..+..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence 4444443332211 011 13344455555555555555444444444444444433
Q ss_pred -----------cCCcCCCCCCcccCCCCCCCEEeccCcceeecCC-cCccCCCCCCEEECCCCCCccCCCccCcCCCCCC
Q 007553 244 -----------SSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIP-PTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQ 311 (599)
Q Consensus 244 -----------~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~ 311 (599)
++|.+++..|..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence 3334444445556666666666666666665544 3455666666666666665544444444444445
Q ss_pred EEEcccCcCc--cCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCc
Q 007553 312 NLAVNHNSLS--GSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS 369 (599)
Q Consensus 312 ~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~ 369 (599)
.|++++|.+. +..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 5544444443 233444444444444444444444444444444444444444444444
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=373.72 Aligned_cols=348 Identities=19% Similarity=0.291 Sum_probs=304.2
Q ss_pred CCcccCCCCCCCEEEcccCcCcc-----------------cCCcCCC--CCCCCCEEeccCCcccccCCccCCCCCCCcE
Q 007553 36 IPSETGALSRLKVLDLSYNRLTG-----------------TIPSEIG--SLRDLLELNLSYNILNGSIPLEFGNLKDLYD 96 (599)
Q Consensus 36 ~~~~~~~~~~L~~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 96 (599)
+|+.++++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 88889999999999999999997 3899888 9999999999999999999999999999999
Q ss_pred EEeecCc-CCc-cCCccccCCC-------cCCEEeeecccccccCCc--cccCCCcccEEecccCccCCCCcccccCCCC
Q 007553 97 LRLQGNK-LDG-LIPSSIGNLT-------NLTHLDLSLNQLSGRLPQ--EVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165 (599)
Q Consensus 97 L~L~~n~-~~~-~~~~~~~~l~-------~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 165 (599)
|+|++|+ +++ .+|..++.++ +|++|++++|.+. .+|. .+.++++|++|++++|.++ .+| .|..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 887 6787676665 9999999999999 7887 8999999999999999998 777 8999999
Q ss_pred CCeeecccccccccCccccCCCCC-CCEEEccCCcccccCchhccCCCC--CCEEeCCCCcCcccCccc---CC--CCCC
Q 007553 166 LSTLYLAYNNLVGPLPKEVGNLKN-LDSLLLNRNNLTGPIPSTIGFLNL--LDELRLSHNRLDGPIPPT---IG--NLTY 237 (599)
Q Consensus 166 L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~---~~--~l~~ 237 (599)
|+.|+|++|.+. .+|..+..+++ |++|++++|.+. .+|..+..+.. |+.|++++|.+.+.+|.. +. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999999998 78888999999 999999999998 67887777654 999999999999876532 22 3458
Q ss_pred CCEEEccCCcCCCCCCcc-cCCCCCCCEEeccCcceeecCCcCccCC--------CCCCEEECCCCCCccCCCccCc--C
Q 007553 238 LTSLDLSSNQLSGLLPRE-VGNLKYLDSLSLDRNNLIGPIPPTIGYL--------TNLTSLNLGYNQLNSSIPPELM--N 306 (599)
Q Consensus 238 L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~--------~~L~~L~ls~n~~~~~~~~~~~--~ 306 (599)
|+.|++++|.++. +|.. +..+++|+.|+|++|.+. .+|..+... ++|+.|+|++|+++ .+|..+. .
T Consensus 675 L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 675 ASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp EEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred cCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 9999999999994 5555 458899999999999998 666554332 38999999999998 6788876 8
Q ss_pred CCCCCEEEcccCcCccCCCccccCCCCCCEEeCCC------ccccccCCcccCCCCCCCEEECCCCcCcccCCccCC-CC
Q 007553 307 CSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSH------NFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF-RV 379 (599)
Q Consensus 307 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~ 379 (599)
+++|+.|+|++|.+++ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|.+ +.+|..+. .+
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L 829 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQL 829 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSS
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCC
Confidence 9999999999999997 788899999999999976 788889999999999999999999999 66776543 46
Q ss_pred CeeecccCccceeC
Q 007553 380 PGLKWSENNLEVEN 393 (599)
Q Consensus 380 ~~l~~~~n~~~~~~ 393 (599)
..+++++|++....
T Consensus 830 ~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 830 YILDIADNPNISID 843 (876)
T ss_dssp CEEECCSCTTCEEE
T ss_pred CEEECCCCCCCccC
Confidence 88999999876544
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=358.83 Aligned_cols=397 Identities=22% Similarity=0.221 Sum_probs=330.0
Q ss_pred cccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCC
Q 007553 6 NAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIP 85 (599)
Q Consensus 6 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 85 (599)
+.+++|. .+ .+++++|++++ +.+++..+..|..+++|++|++++|.+++..|..|+++++|++|+|++|.+++..|
T Consensus 18 ~l~~ip~-~l--~~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 18 NFYKIPD-NL--PFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp CCSSCCS-SS--CSSCCEEECCS-CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CccccCC-Cc--cccccEEEccC-CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 4556665 22 36799999999 99998888899999999999999999998888899999999999999999998888
Q ss_pred ccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccc-cCCccccCCCcccEEecccCccCCCCcccccCCC
Q 007553 86 LEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG-RLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLN 164 (599)
Q Consensus 86 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 164 (599)
..|.++++|++|++++|++.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+..++
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 999999999999999999997766679999999999999999987 3689999999999999999999988888888888
Q ss_pred CC----CeeecccccccccCccccCCCCCCCEEEccCC------------------------------------------
Q 007553 165 QL----STLYLAYNNLVGPLPKEVGNLKNLDSLLLNRN------------------------------------------ 198 (599)
Q Consensus 165 ~L----~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n------------------------------------------ 198 (599)
+| +.|++++|.+.+..+..+... +|+.|++++|
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred ccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 88 899999999998777777655 7888887776
Q ss_pred ----------------cccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcc-c-----
Q 007553 199 ----------------NLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPRE-V----- 256 (599)
Q Consensus 199 ----------------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l----- 256 (599)
.+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+.. +|.. +
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~~~l~~L~~ 329 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPTLKLKSLKR 329 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCBCBCSSCCE
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccc-cCcccccccCE
Confidence 223345566777899999999999987 567777766 77777777776652 3221 1
Q ss_pred --------------CCCCCCCEEeccCcceeecC--CcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcC
Q 007553 257 --------------GNLKYLDSLSLDRNNLIGPI--PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSL 320 (599)
Q Consensus 257 --------------~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l 320 (599)
..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+
T Consensus 330 L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l 408 (570)
T 2z63_A 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNL 408 (570)
T ss_dssp EEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEE
T ss_pred EeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCcc
Confidence 56789999999999988653 6678889999999999999986544 488999999999999999
Q ss_pred ccCCC-ccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCc-ccCCccCC---CCCeeecccCccceeCCC
Q 007553 321 SGSIP-SEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS-GVIPKSVF---RVPGLKWSENNLEVENPV 395 (599)
Q Consensus 321 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~---~~~~l~~~~n~~~~~~~~ 395 (599)
.+..+ ..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++ +..|..+. .++.+++++|.+.+..|.
T Consensus 409 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 488 (570)
T 2z63_A 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488 (570)
T ss_dssp ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh
Confidence 87766 57889999999999999999999999999999999999999998 56776554 458889999999887664
Q ss_pred CCCCCCCCCcccccCC
Q 007553 396 ISENAPPPQTQHFKGN 411 (599)
Q Consensus 396 ~~~~~~~~~~~~~~~~ 411 (599)
.....+......+.++
T Consensus 489 ~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 489 AFNSLSSLQVLNMASN 504 (570)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred hhhcccCCCEEeCCCC
Confidence 3333444444444444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=356.50 Aligned_cols=394 Identities=22% Similarity=0.202 Sum_probs=268.8
Q ss_pred CcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccC
Q 007553 5 GNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSI 84 (599)
Q Consensus 5 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 84 (599)
+.++++|..- .++|++|++++ +.+++..|..++.+++|++|++++|.+++..|.+|+.+++|++|+|++|.+++..
T Consensus 15 ~~l~~ip~~~---~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 15 RSFTSIPSGL---TAAMKSLDLSF-NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp SCCSSCCSCC---CTTCCEEECCS-SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CccccccccC---CCCccEEECcC-CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 4566666632 26788888888 7787777778888888888888888888777778888888888888888888766
Q ss_pred CccCCCCCCCcEEEeecCcCCcc-CCccccCCCcCCEEeeeccc-ccccCCccccCCCcccEEecccCccCCCCcccccC
Q 007553 85 PLEFGNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQ-LSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162 (599)
Q Consensus 85 p~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~ 162 (599)
|..|+++++|++|++++|++.+. .|..++++++|++|++++|. +....+..+.++++|++|++++|.+++..|..+..
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 66688888888888888888753 45678888888888888887 44334457888888888888888888777777766
Q ss_pred CCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccC---------------------------c----hh----
Q 007553 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPI---------------------------P----ST---- 207 (599)
Q Consensus 163 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~---------------------------~----~~---- 207 (599)
+++|++|+++.|.+.......+..+++|++|++++|.+.+.. + ..
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 666666666555543221111233445555555544443310 0 00
Q ss_pred -------------------------------------------------------ccCCCCCCEEeCCCCcCcccCcccC
Q 007553 208 -------------------------------------------------------IGFLNLLDELRLSHNRLDGPIPPTI 232 (599)
Q Consensus 208 -------------------------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~ 232 (599)
+.....|+.|++++|.+. .+|..+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~ 329 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF 329 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence 011134555555555554 344333
Q ss_pred -CCCCCCCEEEccCCcCCCCCC---cccCCCCCCCEEeccCcceeecCC--cCccCCCCCCEEECCCCCCccCCCccCcC
Q 007553 233 -GNLTYLTSLDLSSNQLSGLLP---REVGNLKYLDSLSLDRNNLIGPIP--PTIGYLTNLTSLNLGYNQLNSSIPPELMN 306 (599)
Q Consensus 233 -~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~ls~n~~~~~~~~~~~~ 306 (599)
..+++|++|++++|.+.+..| ..++.+++|+.|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 408 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC
T ss_pred HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc
Confidence 467888888888888887553 336778888888888888875422 34677888888888888887 57777788
Q ss_pred CCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCcc--CCCCCeeec
Q 007553 307 CSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKS--VFRVPGLKW 384 (599)
Q Consensus 307 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~--~~~~~~l~~ 384 (599)
+++|+.|++++|.+++ +|..+ .++|+.|++++|++++.. ..+++|+.|++++|.++. +|.. +..+..+++
T Consensus 409 ~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~~~~l~~L~~L~L 480 (549)
T 2z81_A 409 PEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT-LPDASLFPVLLVMKI 480 (549)
T ss_dssp CTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS-CCCGGGCTTCCEEEC
T ss_pred cccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCc-CCCcccCccCCEEec
Confidence 8888888888888873 34333 257888888888887542 467788888888888873 4432 345577888
Q ss_pred ccCccceeCCCCCCCCCCCCcccccCCC
Q 007553 385 SENNLEVENPVISENAPPPQTQHFKGNK 412 (599)
Q Consensus 385 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (599)
++|++.+..|......+......+.+|+
T Consensus 481 s~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 8888876555322333444455555555
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=351.21 Aligned_cols=372 Identities=23% Similarity=0.240 Sum_probs=258.3
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS 83 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 83 (599)
.+.++++|..-. ++|++|++++ |.+.+..|..+..+++|++|+|++|.+++..|..|+++++|++|+|++|+++ .
T Consensus 9 ~n~l~~ip~~~~---~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 83 (520)
T 2z7x_B 9 KNGLIHVPKDLS---QKTTILNISQ-NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-K 83 (520)
T ss_dssp TSCCSSCCCSCC---TTCSEEECCS-SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-E
T ss_pred CCCccccccccc---ccccEEECCC-CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-e
Confidence 355667775322 7888888888 7887777778888888888888888888777888888888888888888888 4
Q ss_pred CCccCCCCCCCcEEEeecCcCCcc-CCccccCCCcCCEEeeecccccccCCccccCCCcc--cEEecccCcc--CCCCcc
Q 007553 84 IPLEFGNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL--VSLFLDNNNL--TGPIPS 158 (599)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~l~~n~i--~~~~~~ 158 (599)
+|.. .+++|++|++++|++.+. +|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|.
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc
Confidence 5544 788888888888888763 67788888888888888888875 346666677 8888888877 555554
Q ss_pred cccC--------------------------CCCC----------------------------------------------
Q 007553 159 TLYH--------------------------LNQL---------------------------------------------- 166 (599)
Q Consensus 159 ~l~~--------------------------l~~L---------------------------------------------- 166 (599)
.+.. +++|
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence 4444 3333
Q ss_pred -----------CeeecccccccccCcccc-----CCCCCCCEEEccCCcccccCc-hhccCC---CCCCEEeCCCCcCcc
Q 007553 167 -----------STLYLAYNNLVGPLPKEV-----GNLKNLDSLLLNRNNLTGPIP-STIGFL---NLLDELRLSHNRLDG 226 (599)
Q Consensus 167 -----------~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~~L~l~~n~l~~ 226 (599)
++|++++|.+.+.+|..+ ..+++|+.++++.|.+ .+| ..+..+ ..|+.|++++|.+.+
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc
Confidence 333333343333333333 3344444444444433 122 111111 335555555555442
Q ss_pred cCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceee--cCCcCccCCCCCCEEECCCCCCccCCCc-c
Q 007553 227 PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG--PIPPTIGYLTNLTSLNLGYNQLNSSIPP-E 303 (599)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~ls~n~~~~~~~~-~ 303 (599)
.. .+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .
T Consensus 317 ~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 317 ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 21 12577888888888888887778888888888888888888876 4556677888888888888888874554 3
Q ss_pred CcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCC---CCC
Q 007553 304 LMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF---RVP 380 (599)
Q Consensus 304 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~---~~~ 380 (599)
+..+++|+.|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+..+. .+.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 67788888888888888776665553 67888888888888 6777666888888888888888854333233 347
Q ss_pred eeecccCcccee
Q 007553 381 GLKWSENNLEVE 392 (599)
Q Consensus 381 ~l~~~~n~~~~~ 392 (599)
.+++++|++.+.
T Consensus 472 ~L~l~~N~~~c~ 483 (520)
T 2z7x_B 472 KIWLHTNPWDCS 483 (520)
T ss_dssp EEECCSSCBCCC
T ss_pred EEECcCCCCccc
Confidence 777888887653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=344.95 Aligned_cols=368 Identities=21% Similarity=0.224 Sum_probs=315.9
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccC-CccCCCCCCCcEEEee
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSI-PLEFGNLKDLYDLRLQ 100 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~ 100 (599)
+.++..+ +.++ .+|. + .++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|+|+
T Consensus 13 ~~~~c~~-~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICIN-RGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCS-SCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCC-CCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 4556655 5554 5665 3 378999999999999888999999999999999999997444 6789999999999999
Q ss_pred cCcCCccCCccccCCCcCCEEeeecccccccCCcc--ccCCCcccEEecccCccCCCCccc-ccCCCCCCeeeccccccc
Q 007553 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE--VGNLKNLVSLFLDNNNLTGPIPST-LYHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 101 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~l~~n~~~ 177 (599)
+|++.+..|..|+++++|++|++++|.+++..+.. +.++++|++|++++|.+++..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99999888999999999999999999998755444 899999999999999999887775 889999999999999999
Q ss_pred ccCccccCCC--CCCCEEEccCCcccccCchh--------ccCCCCCCEEeCCCCcCcccCcccCCC---CCCCCEEEcc
Q 007553 178 GPLPKEVGNL--KNLDSLLLNRNNLTGPIPST--------IGFLNLLDELRLSHNRLDGPIPPTIGN---LTYLTSLDLS 244 (599)
Q Consensus 178 ~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~ 244 (599)
+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+.. .++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 8888887766 78999999999988654433 335688999999999999877766544 3899999999
Q ss_pred CCcCCCCC----------CcccC--CCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCE
Q 007553 245 SNQLSGLL----------PREVG--NLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQN 312 (599)
Q Consensus 245 ~n~l~~~~----------~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~ 312 (599)
+|...+.. +..+. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 98665431 11222 2368999999999999999999999999999999999999988889999999999
Q ss_pred EEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccC---CCCCeeecccCcc
Q 007553 313 LAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSV---FRVPGLKWSENNL 389 (599)
Q Consensus 313 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---~~~~~l~~~~n~~ 389 (599)
|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+ ..++.+++++|++
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 9999999998888899999999999999999998889999999999999999999998766544 3458899999999
Q ss_pred ceeCC
Q 007553 390 EVENP 394 (599)
Q Consensus 390 ~~~~~ 394 (599)
.+..|
T Consensus 408 ~~~~~ 412 (455)
T 3v47_A 408 DCSCP 412 (455)
T ss_dssp CCCTT
T ss_pred ccCCC
Confidence 87665
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=350.76 Aligned_cols=379 Identities=23% Similarity=0.242 Sum_probs=299.4
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS 83 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 83 (599)
.+.+..++..+|.++++|++|++++ |.+.+..|..|+.+++|++|++++|.+++..|..|+++++|++|++++|.+++.
T Consensus 35 ~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 35 FNKITYIGHGDLRACANLQVLILKS-SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113 (549)
T ss_dssp SSCCCEECSSTTSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS
T ss_pred CCccCccChhhhhcCCcccEEECCC-CCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc
Confidence 4567888888899999999999999 999988889999999999999999999977777799999999999999999863
Q ss_pred -CCccCCCCCCCcEEEeecCcCCccC-CccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCccccc
Q 007553 84 -IPLEFGNLKDLYDLRLQGNKLDGLI-PSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161 (599)
Q Consensus 84 -~p~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~ 161 (599)
.|..|.++++|++|++++|++.+.+ +..|.++++|++|++++|.+.+..|..+.++++|++|+++.|.+....+..+.
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 193 (549)
T 2z81_A 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193 (549)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHH
T ss_pred chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHh
Confidence 5678999999999999999844444 46899999999999999999988888888777777777776665432211223
Q ss_pred CCCCCCeeecccccccccC--c----------------------------------------------------------
Q 007553 162 HLNQLSTLYLAYNNLVGPL--P---------------------------------------------------------- 181 (599)
Q Consensus 162 ~l~~L~~L~l~~n~~~~~~--~---------------------------------------------------------- 181 (599)
.+++|++|++++|.+.+.. +
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 4556666666665554320 0
Q ss_pred -cccC-----------------------------CCCCCCEEEccCCcccccCchhc-cCCCCCCEEeCCCCcCcccCc-
Q 007553 182 -KEVG-----------------------------NLKNLDSLLLNRNNLTGPIPSTI-GFLNLLDELRLSHNRLDGPIP- 229 (599)
Q Consensus 182 -~~l~-----------------------------~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~- 229 (599)
..+. ..++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+.+..+
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~ 352 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK 352 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc
Confidence 0001 1235666677777665 456555 578999999999999987654
Q ss_pred --ccCCCCCCCCEEEccCCcCCCCCC--cccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCc
Q 007553 230 --PTIGNLTYLTSLDLSSNQLSGLLP--REVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305 (599)
Q Consensus 230 --~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 305 (599)
..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..+
T Consensus 353 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~- 429 (549)
T 2z81_A 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI- 429 (549)
T ss_dssp HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS-
T ss_pred chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh-
Confidence 347889999999999999986432 45888999999999999998 678888889999999999999874 44433
Q ss_pred CCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCC---CCCee
Q 007553 306 NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF---RVPGL 382 (599)
Q Consensus 306 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~---~~~~l 382 (599)
.++|+.|++++|.+++.+ ..+++|++|++++|+++ .+|. ...+++|+.|++++|.+++..|..+. .++.+
T Consensus 430 -~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 430 -PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp -CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred -cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence 268999999999998643 57889999999999998 5665 45688999999999999988876544 45788
Q ss_pred ecccCccceeCC
Q 007553 383 KWSENNLEVENP 394 (599)
Q Consensus 383 ~~~~n~~~~~~~ 394 (599)
++++|++.+..|
T Consensus 503 ~l~~N~~~~~~~ 514 (549)
T 2z81_A 503 WLHTNPWDCSCP 514 (549)
T ss_dssp ECCSSCBCCCHH
T ss_pred EecCCCccCCCc
Confidence 899998876443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=345.98 Aligned_cols=377 Identities=24% Similarity=0.236 Sum_probs=290.8
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeec
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 101 (599)
++|++++ +.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 3 ~~l~ls~-n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSK-NGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTT-SCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCC-CCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 6899998 8888 6887775 8999999999999987778899999999999999999988899999999999999999
Q ss_pred CcCCccCCccccCCCcCCEEeeecccccc-cCCccccCCCcccEEecccCccCCCCcccccCCCCC--Ceeecccccc--
Q 007553 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSG-RLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQL--STLYLAYNNL-- 176 (599)
Q Consensus 102 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~l~~n~~-- 176 (599)
|++.. +|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 79 N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred Cceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 99984 5554 89999999999999987 478899999999999999999986 356777788 9999999988
Q ss_pred cccCccccCC--------------------------CCCCCEEEccCCc------------------------------c
Q 007553 177 VGPLPKEVGN--------------------------LKNLDSLLLNRNN------------------------------L 200 (599)
Q Consensus 177 ~~~~~~~l~~--------------------------l~~L~~L~l~~n~------------------------------~ 200 (599)
.+..|..+.. +++|+.|++++|. +
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence 5555555544 3334444444432 2
Q ss_pred cccCchhc---cCCCCCCEEeCCCCcCcccCcccC-----CCCCCCCEEEccCC--------------------------
Q 007553 201 TGPIPSTI---GFLNLLDELRLSHNRLDGPIPPTI-----GNLTYLTSLDLSSN-------------------------- 246 (599)
Q Consensus 201 ~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n-------------------------- 246 (599)
.+..+..+ ...+.|+.|++++|.+.+.+|..+ ..+++|+.+++++|
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 21100000 012356667777777766666665 55555555555444
Q ss_pred cCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCcc--CCCccCcCCCCCCEEEcccCcCccCC
Q 007553 247 QLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS--SIPPELMNCSQLQNLAVNHNSLSGSI 324 (599)
Q Consensus 247 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~ 324 (599)
.+.+.. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|.+++.+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 443211 12678999999999999999889999999999999999999986 45667889999999999999999856
Q ss_pred Cc-cccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccC---CCCCeeecccCccceeCCCCCCCC
Q 007553 325 PS-EIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSV---FRVPGLKWSENNLEVENPVISENA 400 (599)
Q Consensus 325 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---~~~~~l~~~~n~~~~~~~~~~~~~ 400 (599)
|. .+..+++|++|++++|++++..|..+. ++|+.|++++|.++ .+|..+ ..++.+++++|.+....+......
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 467 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccC
Confidence 65 478899999999999999988877664 78999999999998 566544 455889999999885333212333
Q ss_pred CCCCcccccCCCC
Q 007553 401 PPPQTQHFKGNKG 413 (599)
Q Consensus 401 ~~~~~~~~~~~~~ 413 (599)
+........+|+-
T Consensus 468 ~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 468 TSLQKIWLHTNPW 480 (520)
T ss_dssp TTCCEEECCSSCB
T ss_pred CcccEEECcCCCC
Confidence 4444555666653
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=342.47 Aligned_cols=371 Identities=23% Similarity=0.215 Sum_probs=224.6
Q ss_pred CcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccC
Q 007553 5 GNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSI 84 (599)
Q Consensus 5 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 84 (599)
++++++|..- .++|++|++++ |.+.+..|..++.+++|++|+|++|.+++..|+.|.++++|++|+|++|.++ .+
T Consensus 41 ~~L~~ip~~~---~~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 115 (562)
T 3a79_B 41 RNLTHVPKDL---PPRTKALSLSQ-NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NI 115 (562)
T ss_dssp SCCCSCCTTS---CTTCCEEECCS-SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EE
T ss_pred CCCccCCCCC---CCCcCEEECCC-CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-cc
Confidence 4555666532 26788888887 7777666677788888888888888888777777888888888888888877 45
Q ss_pred CccCCCCCCCcEEEeecCcCCcc-CCccccCCCcCCEEeeecccccccCCccccCCCcc--cEEecccCcc--CCCCccc
Q 007553 85 PLEFGNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL--VSLFLDNNNL--TGPIPST 159 (599)
Q Consensus 85 p~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~l~~n~i--~~~~~~~ 159 (599)
|.. .+++|++|++++|++.+. .|..|+++++|++|++++|.+.... +..+++| ++|++++|.+ ++..|..
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCccc
Confidence 544 678888888888887753 3567888888888888888776532 3444444 8888888777 5555544
Q ss_pred ccCCC--------------------------CCCeeeccccc----------------------------cccc----Cc
Q 007553 160 LYHLN--------------------------QLSTLYLAYNN----------------------------LVGP----LP 181 (599)
Q Consensus 160 l~~l~--------------------------~L~~L~l~~n~----------------------------~~~~----~~ 181 (599)
+..+. +|+.|++++|. +.+. ++
T Consensus 191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 270 (562)
T 3a79_B 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270 (562)
T ss_dssp EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence 44322 33333333321 0000 00
Q ss_pred cccCCCCCCCEEEccCCcccccCchhc-----cCC--------------------------CCCCEEeCCCCcCcccCcc
Q 007553 182 KEVGNLKNLDSLLLNRNNLTGPIPSTI-----GFL--------------------------NLLDELRLSHNRLDGPIPP 230 (599)
Q Consensus 182 ~~l~~l~~L~~L~l~~n~~~~~~~~~~-----~~l--------------------------~~L~~L~l~~n~l~~~~~~ 230 (599)
..+ ..++|++|++++|.+.+.+|..+ ..+ ..|+.|++++|.+....
T Consensus 271 ~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-- 347 (562)
T 3a79_B 271 QFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV-- 347 (562)
T ss_dssp HHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--
T ss_pred Hhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--
Confidence 000 11245555555555554444333 111 23555555555543221
Q ss_pred cCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceee--cCCcCccCCCCCCEEECCCCCCccCCCc-cCcCC
Q 007553 231 TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG--PIPPTIGYLTNLTSLNLGYNQLNSSIPP-ELMNC 307 (599)
Q Consensus 231 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~ls~n~~~~~~~~-~~~~l 307 (599)
....+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .+..+
T Consensus 348 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 11456667777777777766666666667777777777776664 2234566667777777777777653443 35666
Q ss_pred CCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCC---CCCeeec
Q 007553 308 SQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF---RVPGLKW 384 (599)
Q Consensus 308 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~---~~~~l~~ 384 (599)
++|+.|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|.++...+..+. .+..+++
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence 6777777777776655444332 56777777777766 4555555666777777777776643322122 3355666
Q ss_pred ccCccce
Q 007553 385 SENNLEV 391 (599)
Q Consensus 385 ~~n~~~~ 391 (599)
++|++.+
T Consensus 505 ~~N~~~c 511 (562)
T 3a79_B 505 HDNPWDC 511 (562)
T ss_dssp CSCCBCC
T ss_pred cCCCcCC
Confidence 6666654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-38 Score=336.82 Aligned_cols=383 Identities=22% Similarity=0.208 Sum_probs=296.3
Q ss_pred ccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCC
Q 007553 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94 (599)
Q Consensus 15 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 94 (599)
...+...+++++++ +.+++ +|..+. ++|++|++++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|
T Consensus 27 ~~~~~~~~~l~ls~-~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 27 PFSNELESMVDYSN-RNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp ------CCEEECTT-SCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred ccccCCCcEEEcCC-CCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 34455668999998 88884 787664 899999999999998777899999999999999999999889999999999
Q ss_pred cEEEeecCcCCccCCccccCCCcCCEEeeeccccccc-CCccccCCCcccEEecccCccCCCCcccccCCCCC--Ceeec
Q 007553 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR-LPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQL--STLYL 171 (599)
Q Consensus 95 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~l 171 (599)
++|+|++|++.. +|.. .+++|++|++++|.+.+. .|..++++++|++|++++|.+++. .+..+++| ++|++
T Consensus 103 ~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 103 EYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILL 176 (562)
T ss_dssp CEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEE
T ss_pred CEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEe
Confidence 999999999984 5555 899999999999999874 468899999999999999999864 44555555 99999
Q ss_pred ccccc--cccCccccCC--------------------------CCCCCEEEccCCc------------------------
Q 007553 172 AYNNL--VGPLPKEVGN--------------------------LKNLDSLLLNRNN------------------------ 199 (599)
Q Consensus 172 ~~n~~--~~~~~~~l~~--------------------------l~~L~~L~l~~n~------------------------ 199 (599)
++|.+ .+..|..+.. +++|+.|++++|.
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 99988 6655555543 3456666666653
Q ss_pred ----cccc----CchhccCCCCCCEEeCCCCcCcccCcccC-----CCCC--------------------------CCCE
Q 007553 200 ----LTGP----IPSTIGFLNLLDELRLSHNRLDGPIPPTI-----GNLT--------------------------YLTS 240 (599)
Q Consensus 200 ----~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~--------------------------~L~~ 240 (599)
+.+. .+.. ....+|+.|++++|.+.+.+|..+ ..++ +|++
T Consensus 257 ~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 257 QHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred cCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence 1100 0111 122489999999999998888765 3333 3666
Q ss_pred EEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccC--CCccCcCCCCCCEEEcccC
Q 007553 241 LDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSS--IPPELMNCSQLQNLAVNHN 318 (599)
Q Consensus 241 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~~~~l~~L~~L~l~~n 318 (599)
|++++|.+.... ....+++|++|++++|.+.+..|..+..+++|++|++++|.+++. +|..+..+++|+.|++++|
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 777777665321 126789999999999999998899999999999999999999863 3466889999999999999
Q ss_pred cCccCCCc-cccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCC---CCCeeecccCccceeCC
Q 007553 319 SLSGSIPS-EIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF---RVPGLKWSENNLEVENP 394 (599)
Q Consensus 319 ~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~---~~~~l~~~~n~~~~~~~ 394 (599)
.+++.+|. .+..+++|+.|++++|++++..|..+. ++|+.|++++|.++ .+|..++ .+..+++++|.+...++
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~ 490 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD 490 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCT
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCH
Confidence 99985554 578899999999999999987776654 78999999999998 4555443 45889999999985433
Q ss_pred CCCCCCCCCCcccccCCCC
Q 007553 395 VISENAPPPQTQHFKGNKG 413 (599)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~ 413 (599)
......+........+|+-
T Consensus 491 ~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TSTTTCTTCCCEECCSCCB
T ss_pred HHHhcCCCCCEEEecCCCc
Confidence 2123334444555666653
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=331.70 Aligned_cols=322 Identities=26% Similarity=0.239 Sum_probs=242.4
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeec
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 101 (599)
+.++..+ +.++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~-~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHR-KRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCS-CCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCC-CCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 4566665 5554 456544 25778888888888877777788888888888888888877777888888888888888
Q ss_pred CcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCc
Q 007553 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLP 181 (599)
Q Consensus 102 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 181 (599)
|++....+..|.++++|++|++++|.+....+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 88876655667788888888888888887777778888888888888888877777777788888888888888777666
Q ss_pred cccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCC
Q 007553 182 KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKY 261 (599)
Q Consensus 182 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 261 (599)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|++|++++|.+++..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 66777888888888888777766667777778888888877776666666556667788888888777544456777777
Q ss_pred CCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCC
Q 007553 262 LDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSH 341 (599)
Q Consensus 262 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 341 (599)
|+.|+|++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 77777777777766666677777777777777777777777777777777777777777766666667777777777777
Q ss_pred cccccc
Q 007553 342 NFINGT 347 (599)
Q Consensus 342 n~l~~~ 347 (599)
|.+...
T Consensus 330 N~l~c~ 335 (477)
T 2id5_A 330 NPLACD 335 (477)
T ss_dssp SCEECS
T ss_pred CCccCc
Confidence 777643
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=331.51 Aligned_cols=326 Identities=24% Similarity=0.221 Sum_probs=299.8
Q ss_pred CCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeec
Q 007553 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125 (599)
Q Consensus 46 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 125 (599)
-+.++++++.++ .+|..+ .+++++|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 368999999998 677655 36899999999999988889999999999999999999988899999999999999999
Q ss_pred ccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCc
Q 007553 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIP 205 (599)
Q Consensus 126 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 205 (599)
|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 99997777789999999999999999998888899999999999999999998888899999999999999999998777
Q ss_pred hhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCC
Q 007553 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTN 285 (599)
Q Consensus 206 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 285 (599)
..+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.+|.......+|+.|++++|.+.+..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 78999999999999999999888889999999999999999888777777767779999999999998554457888999
Q ss_pred CCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCC
Q 007553 286 LTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSK 365 (599)
Q Consensus 286 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~ 365 (599)
|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 99999999999988888899999999999999999998899999999999999999999987778889999999999999
Q ss_pred CcCcccCCc
Q 007553 366 NNLSGVIPK 374 (599)
Q Consensus 366 n~l~~~~~~ 374 (599)
|++.+.++.
T Consensus 330 N~l~c~c~~ 338 (477)
T 2id5_A 330 NPLACDCRL 338 (477)
T ss_dssp SCEECSGGG
T ss_pred CCccCccch
Confidence 999987654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-37 Score=321.33 Aligned_cols=347 Identities=30% Similarity=0.437 Sum_probs=261.7
Q ss_pred cCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCc
Q 007553 16 TCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95 (599)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 95 (599)
..++++++|++.+ +.+. .+| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ |.++++|+
T Consensus 43 ~~l~~l~~L~l~~-~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADR-LGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCS-SCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hHhccccEEecCC-CCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 3467788888887 6665 344 37778888888888888875433 7888888888888888885544 88888888
Q ss_pred EEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccc
Q 007553 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNN 175 (599)
Q Consensus 96 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 175 (599)
+|++++|.+.+..+ +.++++|++|++++|.+.+. + .+.++++|++|+++ |.+.+. + .+..+++|++|++++|.
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNK 188 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCc
Confidence 88888888876532 78888888888888888753 3 47888888888886 344433 2 37788888888888888
Q ss_pred ccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcc
Q 007553 176 LVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPRE 255 (599)
Q Consensus 176 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 255 (599)
+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 7754 347778888888888888876544 66778888888888888753 357778888888888888876443
Q ss_pred cCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCC
Q 007553 256 VGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLR 335 (599)
Q Consensus 256 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 335 (599)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 7788888888888888875433 6778888888888888876433 6778888888888888886654 66788888
Q ss_pred EEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCC-ccCCCCCeeecccCcccee
Q 007553 336 QLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP-KSVFRVPGLKWSENNLEVE 392 (599)
Q Consensus 336 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~l~~~~n~~~~~ 392 (599)
.|++++|++++. ..+..+++|+.|++++|++++..| ..+..+..+++++|.+.+.
T Consensus 335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEECC
T ss_pred EeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccCC
Confidence 888888888754 457778888888888888887766 2233446777788777663
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=330.92 Aligned_cols=151 Identities=24% Similarity=0.197 Sum_probs=119.0
Q ss_pred cccccccccccCC-CCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccC
Q 007553 6 NAAELSQLNFTCF-PNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSI 84 (599)
Q Consensus 6 ~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 84 (599)
+.++||. .+ +++++|++++ |.+++..+..|.++++|++|+|++|.|++..|++|.++++|++|+|++|++++..
T Consensus 42 ~l~~vP~----~lp~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 42 NFYKIPD----NLPFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp CCSSCCS----SSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CcCccCC----CCCcCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 4455554 23 3688888888 8888766778888888888888888888777778888888888888888888766
Q ss_pred CccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeeccccccc-CCccccCCCcccEEecccCccCCCCccccc
Q 007553 85 PLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR-LPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161 (599)
Q Consensus 85 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~ 161 (599)
+..|.++++|++|+|++|++++..+..|+++++|++|++++|.+... .|..+..+++|++|++++|++++..+..|.
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 67788888888888888888877667788888888888888888754 567778888888888888887765554443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=315.44 Aligned_cols=335 Identities=28% Similarity=0.428 Sum_probs=290.2
Q ss_pred CcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccC
Q 007553 5 GNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSI 84 (599)
Q Consensus 5 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 84 (599)
+.+.+++. +..+++|++|++++ +.+.+..| +..+++|++|++++|.+++..+ ++.+++|++|++++|.+++..
T Consensus 56 ~~i~~l~~--~~~l~~L~~L~Ls~-n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 56 LGIKSIDG--VEYLNNLTQINFSN-NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp SCCCCCTT--GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCccCcc--hhhhcCCCEEECCC-CccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh
Confidence 45566664 88899999999998 88875543 9999999999999999986544 899999999999999998654
Q ss_pred CccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCC
Q 007553 85 PLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLN 164 (599)
Q Consensus 85 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 164 (599)
+ +.++++|++|++++|.+.+. + .+..+++|++|+++ +.+.+.. .+.++++|++|++++|.+.+. ..+..++
T Consensus 129 ~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 199 (466)
T 1o6v_A 129 P--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLT 199 (466)
T ss_dssp G--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred H--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCC
Confidence 3 89999999999999999864 3 58999999999997 4555332 389999999999999998864 3588899
Q ss_pred CCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEcc
Q 007553 165 QLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLS 244 (599)
Q Consensus 165 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 244 (599)
+|++|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|+++
T Consensus 200 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECC
Confidence 99999999999987654 77899999999999998853 467889999999999999986654 8899999999999
Q ss_pred CCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCC
Q 007553 245 SNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSI 324 (599)
Q Consensus 245 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 324 (599)
+|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..| +..+++|+.|++++|.+++.
T Consensus 274 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 346 (466)
T 1o6v_A 274 ANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV- 346 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred CCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-
Confidence 999986543 8899999999999999986543 7889999999999999987655 77899999999999999865
Q ss_pred CccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCccc
Q 007553 325 PSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV 371 (599)
Q Consensus 325 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ 371 (599)
..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 347 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 347 -SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred -hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 468899999999999999998777 88999999999999999874
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=313.32 Aligned_cols=344 Identities=21% Similarity=0.204 Sum_probs=270.0
Q ss_pred cccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCC
Q 007553 10 LSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFG 89 (599)
Q Consensus 10 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 89 (599)
.....++++++|++|++++ +.+++ +| .++.+++|++|++++|.+++ +| ++.+++|++|++++|.+++. + |+
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~-n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHN-SSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp TSEEEHHHHTTCCEEECCS-SCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred ccccChhHcCCCCEEEccC-CCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cC
Confidence 3344678899999999998 88886 45 68999999999999999986 44 88999999999999999864 4 88
Q ss_pred CCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCee
Q 007553 90 NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTL 169 (599)
Q Consensus 90 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 169 (599)
++++|++|++++|++.+. | ++.+++|++|++++|.+++. + ++++++|++|++++|...+.+ .+..+++|++|
T Consensus 104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 999999999999999864 4 88999999999999999874 3 889999999999999655555 47889999999
Q ss_pred ecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCC
Q 007553 170 YLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLS 249 (599)
Q Consensus 170 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 249 (599)
++++|.+.+. | +..+++|+.|++++|.+++. .+..++.|+.|++++|++++ +| +..+++|+.|++++|.++
T Consensus 176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 9999999874 3 88899999999999999865 47888999999999999997 45 889999999999999999
Q ss_pred CCCCcccCCCC-------CCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCc--------cCcCCCCCCEEE
Q 007553 250 GLLPREVGNLK-------YLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPP--------ELMNCSQLQNLA 314 (599)
Q Consensus 250 ~~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~--------~~~~l~~L~~L~ 314 (599)
+..+..+..+. +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. .+..+++|+.|+
T Consensus 247 ~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred CcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 86544444433 44555666666555554 35678888888888876655443 245566777777
Q ss_pred cccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCCCCCeeecccCccceeCC
Q 007553 315 VNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVENP 394 (599)
Q Consensus 315 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~l~~~~n~~~~~~~ 394 (599)
+++|.+++. + +..+++|+.|++++|++++ ++.|..|++++|.++|. ..+..++.++++.|+++|..|
T Consensus 325 L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~--~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 325 LNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE--GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE--EEEEECCCBCCBTTBEEEECC
T ss_pred CCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec--ceeeecCccccccCcEEEEcC
Confidence 777777763 2 6777777777777777774 23455556677777665 233345667788888888777
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=321.72 Aligned_cols=150 Identities=25% Similarity=0.281 Sum_probs=108.9
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS 83 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 83 (599)
.|.+++++..+|.++++|++|++++ |.+++..|..|+++++|++|+|++|++++..+..|.++++|++|+|++|++++.
T Consensus 61 ~N~i~~l~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l 139 (635)
T 4g8a_A 61 FNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 139 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCS
T ss_pred CCCCCCCCHHHHhCCCCCCEEECCC-CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCC
Confidence 4567777777788888888888877 777766666777778888888888877765566677778888888888877766
Q ss_pred CCccCCCCCCCcEEEeecCcCCcc-CCccccCCCcCCEEeeecccccccCCccccCCCccc----EEecccCccCC
Q 007553 84 IPLEFGNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLV----SLFLDNNNLTG 154 (599)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~----~L~l~~n~i~~ 154 (599)
.+..|+++++|++|++++|++.+. .|..++.+++|++|++++|.+++..+..+..+.+++ .++++.|.+..
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence 666677788888888888777653 466677777888888888877776666666555443 56666666553
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=307.42 Aligned_cols=317 Identities=22% Similarity=0.188 Sum_probs=267.4
Q ss_pred CCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEE
Q 007553 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHL 121 (599)
Q Consensus 42 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 121 (599)
.++++++|++++|.++...+..|..+++|++|++++|.+++..+..|.++++|++|++++|++.+..|..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46888999999999885544557888999999999999988777789999999999999999988778888999999999
Q ss_pred eeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCccc
Q 007553 122 DLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 122 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 201 (599)
++++|.+....+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999866556678899999999999999887777888999999999999988764 3566789999999999876
Q ss_pred ccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCcc
Q 007553 202 GPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIG 281 (599)
Q Consensus 202 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 281 (599)
+ +.....|+.|++++|.+... +. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 4 34456899999999998854 32 3357899999999999863 5788999999999999999988888999
Q ss_pred CCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEE
Q 007553 282 YLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEV 361 (599)
Q Consensus 282 ~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 361 (599)
.+++|++|++++|++++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.. + +..+++|+.|
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L 344 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 344 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEE
Confidence 99999999999999985 4666678899999999999998 5677788899999999999999854 3 6778899999
Q ss_pred ECCCCcCcccCCccC
Q 007553 362 DVSKNNLSGVIPKSV 376 (599)
Q Consensus 362 ~ls~n~l~~~~~~~~ 376 (599)
++++|++++.....+
T Consensus 345 ~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 345 TLSHNDWDCNSLRAL 359 (390)
T ss_dssp ECCSSCEEHHHHHHH
T ss_pred EcCCCCccchhHHHH
Confidence 999999988755443
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=320.39 Aligned_cols=317 Identities=22% Similarity=0.183 Sum_probs=271.5
Q ss_pred CCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEE
Q 007553 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHL 121 (599)
Q Consensus 42 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 121 (599)
.+++++.|++++|.++...+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+.+..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788999999999886656667889999999999999998888889999999999999999998888888999999999
Q ss_pred eeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCccc
Q 007553 122 DLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 122 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 201 (599)
++++|.++...+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+.+.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999766666789999999999999999888888999999999999999888652 566789999999999876
Q ss_pred ccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCcc
Q 007553 202 GPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIG 281 (599)
Q Consensus 202 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 281 (599)
+ +.....|+.|++++|.+....+ . ..++|+.|++++|.+++ +..+..+++|+.|+|++|.+.+..|..+.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~-~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEEC-S--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCccccccc-c--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 4 3455689999999999874433 2 23689999999999986 46788999999999999999998899999
Q ss_pred CCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEE
Q 007553 282 YLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEV 361 (599)
Q Consensus 282 ~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 361 (599)
.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++. + +..+++|+.|
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L 350 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 350 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence 99999999999999986 5666778999999999999998 5777888899999999999999854 3 6677899999
Q ss_pred ECCCCcCcccCCccC
Q 007553 362 DVSKNNLSGVIPKSV 376 (599)
Q Consensus 362 ~ls~n~l~~~~~~~~ 376 (599)
++++|+++|.+...+
T Consensus 351 ~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 351 TLSHNDWDCNSLRAL 365 (597)
T ss_dssp ECCSSCEEHHHHHHH
T ss_pred EeeCCCCCChhHHHH
Confidence 999999988755443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=292.75 Aligned_cols=306 Identities=30% Similarity=0.408 Sum_probs=206.5
Q ss_pred CCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 41 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
..+++|++|+++++.++ .++. +..+++|++|++++|.+++..+ |.++++|++|++++|.+.+. ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 35566666777666665 3332 5666667777777776664322 66667777777777766642 34666677777
Q ss_pred EeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcc
Q 007553 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200 (599)
Q Consensus 121 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 200 (599)
|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 7777776664322 6666777777777765444333 36667777777777776664322 66677777777777776
Q ss_pred cccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCc
Q 007553 201 TGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI 280 (599)
Q Consensus 201 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 280 (599)
.+..+ +..++.|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence 64322 6667777777777777764433 6677777777777777775332 67777788888887777643 356
Q ss_pred cCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCE
Q 007553 281 GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSE 360 (599)
Q Consensus 281 ~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 360 (599)
..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..| +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 7778888888888877754 456777888888888888887777778888888888888888886655 667788888
Q ss_pred EECCCCcCc
Q 007553 361 VDVSKNNLS 369 (599)
Q Consensus 361 L~ls~n~l~ 369 (599)
|++++|+++
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 888888765
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=292.60 Aligned_cols=309 Identities=24% Similarity=0.379 Sum_probs=267.2
Q ss_pred ccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCC
Q 007553 13 LNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLK 92 (599)
Q Consensus 13 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 92 (599)
.++..+++|++|++.+ +.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++. + ..|.+++
T Consensus 38 ~~~~~l~~L~~L~l~~-~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~ 110 (347)
T 4fmz_A 38 VTQEELESITKLVVAG-EKVA-SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLT 110 (347)
T ss_dssp ECHHHHTTCSEEECCS-SCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCT
T ss_pred ccchhcccccEEEEeC-Cccc-cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCC
Confidence 3467899999999998 7776 344 488899999999999999854 44 8999999999999999985 3 4699999
Q ss_pred CCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecc
Q 007553 93 DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLA 172 (599)
Q Consensus 93 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 172 (599)
+|++|++++|.+.+.. . +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 111 ~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 111 NLRELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp TCSEEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred cCCEEECcCCcccCch-h-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 9999999999998653 3 8999999999999997664444 48999999999999999886543 8899999999999
Q ss_pred cccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCC
Q 007553 173 YNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLL 252 (599)
Q Consensus 173 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 252 (599)
+|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence 999886533 8889999999999999986544 7889999999999999986543 88999999999999999863
Q ss_pred CcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCC
Q 007553 253 PREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLI 332 (599)
Q Consensus 253 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 332 (599)
..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..| +..++
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 5688999999999999999864 458889999999999999998888889999999999999999997655 78899
Q ss_pred CCCEEeCCCcccc
Q 007553 333 HLRQLDLSHNFIN 345 (599)
Q Consensus 333 ~L~~L~l~~n~l~ 345 (599)
+|+.|++++|.++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999986
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=299.32 Aligned_cols=312 Identities=22% Similarity=0.222 Sum_probs=273.2
Q ss_pred CCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcE
Q 007553 17 CFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYD 96 (599)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 96 (599)
.++++++|++.+ +.+....+..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++
T Consensus 43 ~l~~l~~l~l~~-~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKN-STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEES-CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecC-CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 468999999998 7766444444688999999999999999888889999999999999999999888888999999999
Q ss_pred EEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccc
Q 007553 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176 (599)
Q Consensus 97 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 176 (599)
|++++|++....+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++. .+..+++|++|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999999966556679999999999999999988888899999999999999999865 356789999999999987
Q ss_pred cccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCccc
Q 007553 177 VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV 256 (599)
Q Consensus 177 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 256 (599)
.+ +...++|++|++++|.+... +. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 64 34457899999999998754 33 2357899999999999865 578999999999999999998889999
Q ss_pred CCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCE
Q 007553 257 GNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336 (599)
Q Consensus 257 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 336 (599)
..+++|+.|+|++|.+.+ ++..+..+++|++|++++|++. .+|..+..+++|+.|++++|.++.. + +..+++|+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 999999999999999986 4556678999999999999998 5677778899999999999999854 3 677899999
Q ss_pred EeCCCcccccc
Q 007553 337 LDLSHNFINGT 347 (599)
Q Consensus 337 L~l~~n~l~~~ 347 (599)
|++++|++...
T Consensus 344 L~l~~N~~~~~ 354 (390)
T 3o6n_A 344 LTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCEEHH
T ss_pred EEcCCCCccch
Confidence 99999999864
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=313.23 Aligned_cols=313 Identities=22% Similarity=0.218 Sum_probs=276.1
Q ss_pred CCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcE
Q 007553 17 CFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYD 96 (599)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 96 (599)
.+++++.+++.+ +.+....+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++
T Consensus 49 ~l~~l~~l~l~~-~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKN-STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESS-CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeC-CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 467889999998 7776555555788999999999999999888889999999999999999999888888999999999
Q ss_pred EEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccc
Q 007553 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176 (599)
Q Consensus 97 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 176 (599)
|+|++|.+.+..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999999976666689999999999999999998898999999999999999999875 356688999999999987
Q ss_pred cccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCccc
Q 007553 177 VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV 256 (599)
Q Consensus 177 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 256 (599)
.+ +...++|+.|++++|.+....+. ..+.|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 64 34567899999999998754332 236899999999999864 678999999999999999999889999
Q ss_pred CCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCE
Q 007553 257 GNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336 (599)
Q Consensus 257 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 336 (599)
..+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+++. + +..+++|+.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~ 349 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 349 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCE
Confidence 999999999999999986 4666778999999999999998 5777788899999999999999854 2 677899999
Q ss_pred EeCCCccccccC
Q 007553 337 LDLSHNFINGTI 348 (599)
Q Consensus 337 L~l~~n~l~~~~ 348 (599)
|++++|.+.+..
T Consensus 350 L~l~~N~~~~~~ 361 (597)
T 3oja_B 350 LTLSHNDWDCNS 361 (597)
T ss_dssp EECCSSCEEHHH
T ss_pred EEeeCCCCCChh
Confidence 999999998653
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=297.31 Aligned_cols=324 Identities=23% Similarity=0.235 Sum_probs=271.1
Q ss_pred ecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCcccc
Q 007553 34 GRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIG 113 (599)
Q Consensus 34 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 113 (599)
+..+..++.+++|++|++++|.+++ +| .++.+++|++|++++|.+++. | ++.+++|++|++++|++.+. + ++
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred cccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cC
Confidence 3444567889999999999999996 45 689999999999999999964 4 89999999999999999875 3 89
Q ss_pred CCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEE
Q 007553 114 NLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSL 193 (599)
Q Consensus 114 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 193 (599)
++++|++|++++|.+++. + ++.+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|
T Consensus 104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 999999999999999964 4 89999999999999999974 3888999999999999766555 47889999999
Q ss_pred EccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCccee
Q 007553 194 LLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273 (599)
Q Consensus 194 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 273 (599)
++++|.+++ +| +..++.|+.|++++|.+++. .+..+++|++|++++|.+++ +| +..+++|+.|++++|.++
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 999999987 44 78899999999999999975 48899999999999999997 55 889999999999999999
Q ss_pred ecCCcCccCCC-------CCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCc--------cccCCCCCCEEe
Q 007553 274 GPIPPTIGYLT-------NLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPS--------EIGNLIHLRQLD 338 (599)
Q Consensus 274 ~~~~~~~~~~~-------~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~ 338 (599)
+..+..+..+. +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. .+.++++|+.|+
T Consensus 247 ~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred CcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 86544443333 45566666666555554 46789999999999987666553 255678999999
Q ss_pred CCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCCCCCeeecccCcccee
Q 007553 339 LSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVE 392 (599)
Q Consensus 339 l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~l~~~~n~~~~~ 392 (599)
+++|++++. + +..+++|+.|++++|++++. ..+..+..+.|.+.+.
T Consensus 325 L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-----~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 325 LNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-----SSVGKIPALNNNFEAE 370 (457)
T ss_dssp CTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-----TTGGGSSGGGTSEEEE
T ss_pred CCCCccccc-c--cccCCcCcEEECCCCCCCCc-----cccccccccCCcEEec
Confidence 999999974 3 88899999999999999873 3445667788888765
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=294.65 Aligned_cols=339 Identities=25% Similarity=0.297 Sum_probs=206.2
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCC-------------CEEEcccCcCcccCCcCCCCCCCC
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRL-------------KVLDLSYNRLTGTIPSEIGSLRDL 70 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------------~~L~l~~n~~~~~~~~~~~~l~~L 70 (599)
++++.++|. .++++++|++|++++ +.+.|.+|+.++.+++| ++|++++|.+++ +|.. .++|
T Consensus 20 ~n~l~~iP~-~i~~L~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L 93 (454)
T 1jl5_A 20 SSNLTEMPV-EAENVKSKTEYYNAW-SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHL 93 (454)
T ss_dssp ---------------CCHHHHHHHH-HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTC
T ss_pred cCchhhCCh-hHhcccchhhhhccC-CcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCC
Confidence 344556664 377777777777777 77777777777776654 777777777763 4432 3577
Q ss_pred CEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccC
Q 007553 71 LELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150 (599)
Q Consensus 71 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 150 (599)
++|++++|.+++ +|.. +++|++|++++|++.+. |. + .++|++|++++|.+++ +| .++++++|++|++++|
T Consensus 94 ~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~-~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 94 ESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp SEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred CEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC-C--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 777777777775 5533 36777777777777642 21 1 1577888888887775 55 4777788888888888
Q ss_pred ccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcc
Q 007553 151 NLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPP 230 (599)
Q Consensus 151 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 230 (599)
++++ +|.. .++|++|++++|.+.+ +| .++.+++|++|++++|.+++ +|.. .++|+.|++++|.+. .+|
T Consensus 164 ~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp- 231 (454)
T 1jl5_A 164 SLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP- 231 (454)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-
T ss_pred cCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-
Confidence 7775 4433 2477788888877775 44 57777788888888877764 3322 247777788777777 555
Q ss_pred cCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCC
Q 007553 231 TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQL 310 (599)
Q Consensus 231 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L 310 (599)
.+..+++|++|++++|.+++ +|.. +++|+.|++++|.+.+ +|.. +++|++|++++|.+++. |.. .++|
T Consensus 232 ~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L 299 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNL 299 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTC
T ss_pred ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcC
Confidence 37777788888888877774 3432 3667777777777764 3432 36677777777777652 110 1455
Q ss_pred CEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCCCCCeeecccCccc
Q 007553 311 QNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLE 390 (599)
Q Consensus 311 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~l~~~~n~~~ 390 (599)
+.|++++|.+++. +. ..++|+.|++++|++++ +|.. +++|+.|++++|.+++ +|..+..++.+++++|++.
T Consensus 300 ~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 300 YYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPELPQNLKQLHVEYNPLR 370 (454)
T ss_dssp CEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS
T ss_pred CEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccchhhhccEEECCCCCCC
Confidence 5666666655531 11 11356666666666653 3332 3556666666666653 3333444556666666655
Q ss_pred e
Q 007553 391 V 391 (599)
Q Consensus 391 ~ 391 (599)
+
T Consensus 371 ~ 371 (454)
T 1jl5_A 371 E 371 (454)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-33 Score=278.33 Aligned_cols=287 Identities=23% Similarity=0.312 Sum_probs=186.0
Q ss_pred CCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeee
Q 007553 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124 (599)
Q Consensus 45 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 124 (599)
++++++++++.++ .+|..+ .++|++|++++|.+++..|..|.++++|++|++++|++.+..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5777777777776 566544 3577778888877776666677777778888887777776667777777777777777
Q ss_pred cccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccc--cCccccCCCCCCCEEEccCCcccc
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG--PLPKEVGNLKNLDSLLLNRNNLTG 202 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~ 202 (599)
+|.+. .+|..+. ++|++|++++|.++...+..|..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 77777 3444333 677777777777776555567777777777777777642 455556655 77777777777664
Q ss_pred cCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccC
Q 007553 203 PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGY 282 (599)
Q Consensus 203 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 282 (599)
+|..+. +.|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 333332 56677777777776665566666777777777777776655556666667777777776665 55666666
Q ss_pred CCCCCEEECCCCCCccCCCccCcC------CCCCCEEEcccCcCc--cCCCccccCCCCCCEEeCCCc
Q 007553 283 LTNLTSLNLGYNQLNSSIPPELMN------CSQLQNLAVNHNSLS--GSIPSEIGNLIHLRQLDLSHN 342 (599)
Q Consensus 283 ~~~L~~L~ls~n~~~~~~~~~~~~------l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n 342 (599)
+++|++|++++|.+++..+..+.. .+.|+.|++++|++. +..|..+..+++|+.+++++|
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 666777777766666554444432 234555555555544 334444555555555555544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=289.89 Aligned_cols=329 Identities=26% Similarity=0.280 Sum_probs=254.3
Q ss_pred CCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCC-------------CEEeccCCccccc
Q 007553 17 CFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDL-------------LELNLSYNILNGS 83 (599)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L-------------~~L~L~~n~~~~~ 83 (599)
..++|++|++++ +.+ +.+|+.++++++|++|++++|.+++.+|..++.+.+| ++|++++|.+++
T Consensus 9 ~~~~L~~L~l~~-n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 9 SNTFLQEPLRHS-SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred ccccchhhhccc-Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 458999999998 888 8999999999999999999999999999999998865 999999999985
Q ss_pred CCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCC
Q 007553 84 IPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163 (599)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 163 (599)
+|.. .++|++|++++|.+.+ +|.. +++|++|++++|.+.+. +.. .++|++|++++|.+++ +| .|..+
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 4442 3789999999999997 5643 48999999999999853 321 2799999999999996 67 59999
Q ss_pred CCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEc
Q 007553 164 NQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDL 243 (599)
Q Consensus 164 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 243 (599)
++|++|++++|++.+ +|.. .++|++|++++|.+.+ +| .+..+++|+.|++++|.+.+ +|.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 999999999999986 5543 3599999999999987 55 58999999999999999985 4432 369999999
Q ss_pred cCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccC
Q 007553 244 SSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGS 323 (599)
Q Consensus 244 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 323 (599)
++|.+. .+| .+..+++|+.|++++|.+.+ +|.. +++|++|++++|.+.+ +|.. .++|+.|++++|.+++.
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence 999998 567 48999999999999999985 4442 4899999999999986 5543 47899999999999862
Q ss_pred CCccccCCCCCCEEeCCCccccccCCcccCCC-CCCCEEECCCCcCcccCCccCCCCCeeecccCccce
Q 007553 324 IPSEIGNLIHLRQLDLSHNFINGTIPSQLGKI-PNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEV 391 (599)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~~~l~~~~n~~~~ 391 (599)
|.. .++|+.|++++|++++ ++ .+ ++|+.|++++|.+++ +|..+..++.+++++|.+..
T Consensus 293 -~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 293 -SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAE 351 (454)
T ss_dssp -SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC
T ss_pred -cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-ccccCCcCCEEECCCCcccc
Confidence 221 2689999999999985 22 23 589999999999997 67677888999999998874
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=283.28 Aligned_cols=249 Identities=33% Similarity=0.470 Sum_probs=132.2
Q ss_pred CCCCEEEcccCcCcc--cCCcCCCCCCCCCEEeccC-CcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 44 SRLKVLDLSYNRLTG--TIPSEIGSLRDLLELNLSY-NILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 44 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
.+++.|+|++|.+++ .+|..|+.+++|++|++++ |.+.+.+|..|.++++|++|+|++|++.+.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 345555555555554 4555555555555555552 5555555555555555555555555555445555555555555
Q ss_pred EeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCC-CCCeeecccccccccCccccCCCCCCCEEEccCCc
Q 007553 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLN-QLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN 199 (599)
Q Consensus 121 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 199 (599)
|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..++ +|++|++++|.+.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~---------------------- 187 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---------------------- 187 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE----------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee----------------------
Confidence 55555555544555555555555555555555444444444444 4445555444444
Q ss_pred ccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcC
Q 007553 200 LTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPT 279 (599)
Q Consensus 200 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 279 (599)
+..|..+..++ |+.|++++|.+.+..+..+..+++|++|++++|.+++..|. +..+++|++|+|++|.+.+.+|..
T Consensus 188 --~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 188 --GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp --EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred --ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 44444444444 55555555555544555555555555555555555543333 445555555555555555555555
Q ss_pred ccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCc
Q 007553 280 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNS 319 (599)
Q Consensus 280 ~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~ 319 (599)
+..+++|++|++++|++++.+|.. ..+++|+.|++++|+
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 555555556666555555555543 455556666666654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=277.77 Aligned_cols=304 Identities=21% Similarity=0.237 Sum_probs=253.9
Q ss_pred CCcccccccccccCC-----CCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCC
Q 007553 4 NGNAAELSQLNFTCF-----PNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYN 78 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 78 (599)
.+++.++|......| .+++++++++ +.+. .+|..+ .++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 13 ~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~-~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 88 (332)
T 2ft3_A 13 IPDLDSLPPTYSAMCPFGCHCHLRVVQCSD-LGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88 (332)
T ss_dssp ------------CCCCSSCEEETTEEECCS-SCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCccccCCCcccCCCCCCCcccCCEEECCC-CCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC
Confidence 344555555433333 4799999998 7766 677766 368999999999999888889999999999999999
Q ss_pred cccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCC--CC
Q 007553 79 ILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG--PI 156 (599)
Q Consensus 79 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~--~~ 156 (599)
.+++..|..|.++++|++|++++|++. .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.++. ..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 89 KISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp CCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred ccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 999888999999999999999999998 4555554 899999999999998777889999999999999999963 56
Q ss_pred cccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCC
Q 007553 157 PSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLT 236 (599)
Q Consensus 157 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 236 (599)
+..+..+ +|++|++++|.+.+ +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 7778887 99999999999986 555443 7999999999999988888999999999999999999988888899999
Q ss_pred CCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccC------CCCCCEEECCCCCCc--cCCCccCcCCC
Q 007553 237 YLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGY------LTNLTSLNLGYNQLN--SSIPPELMNCS 308 (599)
Q Consensus 237 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~ls~n~~~--~~~~~~~~~l~ 308 (599)
+|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|.. ...|+.|++++|.+. +..|..+..++
T Consensus 242 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence 9999999999998 68888999999999999999999766665544 467999999999987 56778899999
Q ss_pred CCCEEEcccCc
Q 007553 309 QLQNLAVNHNS 319 (599)
Q Consensus 309 ~L~~L~l~~n~ 319 (599)
+|+.+++++|+
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 99999999885
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=274.45 Aligned_cols=288 Identities=25% Similarity=0.302 Sum_probs=165.7
Q ss_pred CCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeee
Q 007553 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124 (599)
Q Consensus 45 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 124 (599)
++++++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|++.+..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6777788777776 5555442 577777887777776666677777777777777777776667777777777777777
Q ss_pred cccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccc--cCccccCCCCCCCEEEccCCcccc
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG--PLPKEVGNLKNLDSLLLNRNNLTG 202 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~ 202 (599)
+|.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 77776 3343332 567777777776666555556666666666666666542 344455555566666655555542
Q ss_pred cCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccC
Q 007553 203 PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGY 282 (599)
Q Consensus 203 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 282 (599)
+|..+. ++|+.|++++|.+. +..|..+..+++|+.|++++|.+.+..+..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKIT------------------------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCC------------------------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred -CCcccc--ccCCEEECCCCcCC------------------------ccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 222221 34444444444444 444444444444444444444444444444444
Q ss_pred CCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccC------CCCCCEEeCCCccccc--cCCcccCC
Q 007553 283 LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN------LIHLRQLDLSHNFING--TIPSQLGK 354 (599)
Q Consensus 283 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~--~~~~~~~~ 354 (599)
+++|++|++++|.+. .+|..+..+++|+.|++++|.+++..+..+.. .+.++.+++++|.+.. ..|..+..
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 455555555555544 34444445555555555555554433333321 2456666666666542 34455666
Q ss_pred CCCCCEEECCCC
Q 007553 355 IPNVSEVDVSKN 366 (599)
Q Consensus 355 ~~~L~~L~ls~n 366 (599)
+.+++.+++++|
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 666666666666
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=272.28 Aligned_cols=286 Identities=22% Similarity=0.273 Sum_probs=203.8
Q ss_pred CCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEec
Q 007553 68 RDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFL 147 (599)
Q Consensus 68 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 147 (599)
.++++++++++.++ .+|..+. ++|++|++++|++.+..+..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 46777888777776 4555443 56777777777777665556777777777777777777666666777777777777
Q ss_pred ccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcc-
Q 007553 148 DNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDG- 226 (599)
Q Consensus 148 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 226 (599)
++|.++. +|..+. ++|++|++++|.+.+. .+..+..++.|+.|++++|.+..
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKV------------------------RKSVFNGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBB------------------------CHHHHTTCTTCCEEECCSSCCCGG
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCccccc------------------------CHhHhcCCccccEEECCCCcCCcc
Confidence 7666652 333221 3455555555544444 44444455555555555555532
Q ss_pred -cCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCc
Q 007553 227 -PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305 (599)
Q Consensus 227 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 305 (599)
..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred CcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 445566777777788888777774 444443 7899999999999988888999999999999999999988887899
Q ss_pred CCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCC------CCCCCEEECCCCcCcc--cCCccCC
Q 007553 306 NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGK------IPNVSEVDVSKNNLSG--VIPKSVF 377 (599)
Q Consensus 306 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~ls~n~l~~--~~~~~~~ 377 (599)
.+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..+.. .+.++.+++++|++.. ..|..+.
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 9999999999999998 78888999999999999999999776666643 3678999999999864 3444443
Q ss_pred C---CCeeecccC
Q 007553 378 R---VPGLKWSEN 387 (599)
Q Consensus 378 ~---~~~l~~~~n 387 (599)
. +..+++++|
T Consensus 317 ~~~~l~~l~L~~N 329 (330)
T 1xku_A 317 CVYVRAAVQLGNY 329 (330)
T ss_dssp TCCCGGGEEC---
T ss_pred cccceeEEEeccc
Confidence 3 355666655
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=279.78 Aligned_cols=252 Identities=34% Similarity=0.554 Sum_probs=206.6
Q ss_pred CCCcEEEeecCcCCc--cCCccccCCCcCCEEeeec-ccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCe
Q 007553 92 KDLYDLRLQGNKLDG--LIPSSIGNLTNLTHLDLSL-NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLST 168 (599)
Q Consensus 92 ~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 168 (599)
.++++|+|++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356666666666665 5566666666666666663 6666666666666666666666666666666666667777777
Q ss_pred eecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCC-CCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCc
Q 007553 169 LYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLN-LLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQ 247 (599)
Q Consensus 169 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 247 (599)
|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ .|+.|++++|.+.+..|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 77777777766777777778888888888888777788888887 899999999999999999999887 9999999999
Q ss_pred CCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCcc
Q 007553 248 LSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSE 327 (599)
Q Consensus 248 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 327 (599)
+++..|..+..+++|+.|+|++|.+.+.++. +..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999877665 788999999999999999999999999999999999999999988886
Q ss_pred ccCCCCCCEEeCCCcc-ccc
Q 007553 328 IGNLIHLRQLDLSHNF-ING 346 (599)
Q Consensus 328 ~~~l~~L~~L~l~~n~-l~~ 346 (599)
..+++|+.+++++|+ +.|
T Consensus 288 -~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEES
T ss_pred -ccccccChHHhcCCCCccC
Confidence 889999999999998 443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.98 E-value=8.9e-36 Score=313.42 Aligned_cols=369 Identities=22% Similarity=0.165 Sum_probs=274.5
Q ss_pred CCCCcEEeeCCCCCCeecCCcc-cCCCCCCCEEEcccCcCcc----cCCcCCCCCCCCCEEeccCCcccccCCccCC-CC
Q 007553 18 FPNLVTFRIWGTRFLSGRIPSE-TGALSRLKVLDLSYNRLTG----TIPSEIGSLRDLLELNLSYNILNGSIPLEFG-NL 91 (599)
Q Consensus 18 l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l 91 (599)
.++|++|++++ +.+++..... +..+++|++|++++|.+++ .++..+..+++|++|+|++|.+.+..+..+. .+
T Consensus 2 ~~~l~~L~Ls~-~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred Cccceehhhhh-cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 36788999987 7776543333 6778899999999999874 3456677889999999999988764443332 34
Q ss_pred C----CCcEEEeecCcCCc----cCCccccCCCcCCEEeeecccccccCCccc-----cCCCcccEEecccCccCCCC--
Q 007553 92 K----DLYDLRLQGNKLDG----LIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-----GNLKNLVSLFLDNNNLTGPI-- 156 (599)
Q Consensus 92 ~----~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~l~~n~i~~~~-- 156 (599)
+ +|++|++++|++.. .++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 69999999999874 357788899999999999998875443332 23568999999999888643
Q ss_pred --cccccCCCCCCeeecccccccccCccccC-----CCCCCCEEEccCCccccc----CchhccCCCCCCEEeCCCCcCc
Q 007553 157 --PSTLYHLNQLSTLYLAYNNLVGPLPKEVG-----NLKNLDSLLLNRNNLTGP----IPSTIGFLNLLDELRLSHNRLD 225 (599)
Q Consensus 157 --~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 225 (599)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 55667788999999999987754333332 356899999999988763 4667778899999999999887
Q ss_pred ccC-----cccCCCCCCCCEEEccCCcCCCC----CCcccCCCCCCCEEeccCcceeecCCcCcc-----CCCCCCEEEC
Q 007553 226 GPI-----PPTIGNLTYLTSLDLSSNQLSGL----LPREVGNLKYLDSLSLDRNNLIGPIPPTIG-----YLTNLTSLNL 291 (599)
Q Consensus 226 ~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l 291 (599)
+.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 542 22344688999999999988864 466677789999999999988754332222 2368999999
Q ss_pred CCCCCccC----CCccCcCCCCCCEEEcccCcCccCCCccccC-----CCCCCEEeCCCccccc----cCCcccCCCCCC
Q 007553 292 GYNQLNSS----IPPELMNCSQLQNLAVNHNSLSGSIPSEIGN-----LIHLRQLDLSHNFING----TIPSQLGKIPNV 358 (599)
Q Consensus 292 s~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~~~~L 358 (599)
++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 99998765 4455667789999999999887654444432 6789999999999986 677778788999
Q ss_pred CEEECCCCcCccc--------CCccCCCCCeeecccC
Q 007553 359 SEVDVSKNNLSGV--------IPKSVFRVPGLKWSEN 387 (599)
Q Consensus 359 ~~L~ls~n~l~~~--------~~~~~~~~~~l~~~~n 387 (599)
+.|++++|++++. +|.....+..+.+.++
T Consensus 401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred cEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 9999999988765 3333344555555444
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-34 Score=302.96 Aligned_cols=368 Identities=19% Similarity=0.144 Sum_probs=284.9
Q ss_pred Cccccccccc-ccCCCCCcEEeeCCCCCCee----cCCcccCCCCCCCEEEcccCcCcccCCcCC-CCCC----CCCEEe
Q 007553 5 GNAAELSQLN-FTCFPNLVTFRIWGTRFLSG----RIPSETGALSRLKVLDLSYNRLTGTIPSEI-GSLR----DLLELN 74 (599)
Q Consensus 5 ~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~l~----~L~~L~ 74 (599)
+++.+..... +..+++|++|++++ +.+.+ .++..+..+++|++|++++|.+++..+..+ ..++ +|++|+
T Consensus 13 ~~l~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 91 (461)
T 1z7x_W 13 EELSDARWAELLPLLQQCQVVRLDD-CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 91 (461)
T ss_dssp CCCCHHHHHHHHHHHTTCSEEEEES-SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred cccCchhHHHHHhhcCCccEEEccC-CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEE
Confidence 3444444444 77899999999999 77764 456778889999999999999976444333 2344 799999
Q ss_pred ccCCcccc----cCCccCCCCCCCcEEEeecCcCCccCCcccc-----CCCcCCEEeeecccccccC----CccccCCCc
Q 007553 75 LSYNILNG----SIPLEFGNLKDLYDLRLQGNKLDGLIPSSIG-----NLTNLTHLDLSLNQLSGRL----PQEVGNLKN 141 (599)
Q Consensus 75 L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~----~~~l~~l~~ 141 (599)
|++|.++. .++..|..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.. +..+..+++
T Consensus 92 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 171 (461)
T 1z7x_W 92 LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171 (461)
T ss_dssp CTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTT
T ss_pred ccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCC
Confidence 99999984 4588899999999999999998754333332 3568999999999998643 566778899
Q ss_pred ccEEecccCccCCCCccccc-----CCCCCCeeeccccccccc----CccccCCCCCCCEEEccCCcccccC-----chh
Q 007553 142 LVSLFLDNNNLTGPIPSTLY-----HLNQLSTLYLAYNNLVGP----LPKEVGNLKNLDSLLLNRNNLTGPI-----PST 207 (599)
Q Consensus 142 L~~L~l~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-----~~~ 207 (599)
|++|++++|.++...+..+. ..++|++|++++|.+... ++..+..+++|++|++++|.+.+.. +..
T Consensus 172 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~ 251 (461)
T 1z7x_W 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHH
Confidence 99999999998765443332 366999999999998863 4667788999999999999887532 223
Q ss_pred ccCCCCCCEEeCCCCcCccc----CcccCCCCCCCCEEEccCCcCCCCCCcccC-----CCCCCCEEeccCcceeec---
Q 007553 208 IGFLNLLDELRLSHNRLDGP----IPPTIGNLTYLTSLDLSSNQLSGLLPREVG-----NLKYLDSLSLDRNNLIGP--- 275 (599)
Q Consensus 208 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~--- 275 (599)
+..++.|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++.
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 331 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH
Confidence 34688999999999999864 566777899999999999998754333332 336999999999999865
Q ss_pred -CCcCccCCCCCCEEECCCCCCccCCCccCc-----CCCCCCEEEcccCcCcc----CCCccccCCCCCCEEeCCCcccc
Q 007553 276 -IPPTIGYLTNLTSLNLGYNQLNSSIPPELM-----NCSQLQNLAVNHNSLSG----SIPSEIGNLIHLRQLDLSHNFIN 345 (599)
Q Consensus 276 -~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~ 345 (599)
++..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 455667789999999999999865443332 26799999999999986 67888888999999999999998
Q ss_pred ccCCc----cc-CCCCCCCEEECCCCcCcccCC
Q 007553 346 GTIPS----QL-GKIPNVSEVDVSKNNLSGVIP 373 (599)
Q Consensus 346 ~~~~~----~~-~~~~~L~~L~ls~n~l~~~~~ 373 (599)
+.... .+ .....|+.|++.++.+....+
T Consensus 412 ~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 412 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred HHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 54221 12 224578899998887765443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=260.47 Aligned_cols=277 Identities=21% Similarity=0.228 Sum_probs=171.3
Q ss_pred CCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 41 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
..|+...+.+++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++.+..|..|.++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34556666777777776 5565443 47777777777777665557777777777777777777666667777777777
Q ss_pred EeeecccccccCCccccCCCcccEEecccCccCCCCc-ccccCCCCCCeeeccccc-ccccCccccCCCCCCCEEEccCC
Q 007553 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP-STLYHLNQLSTLYLAYNN-LVGPLPKEVGNLKNLDSLLLNRN 198 (599)
Q Consensus 121 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n 198 (599)
|++++|.+++..+..+.++++|++|++++|+++...+ ..+..+++|++|++++|. +....+..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 7777777775555557777777777777777764433 356677777777777773 55455566677777777777777
Q ss_pred cccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccC---CCCCCCEEeccCcceee-
Q 007553 199 NLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVG---NLKYLDSLSLDRNNLIG- 274 (599)
Q Consensus 199 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~- 274 (599)
.+.+..+..+..+++|+.|++++|.+.......+..+++|++|++++|.+++..+..+. ..+.++.+++.++.+.+
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 77766666677777777777777776533333344466777777777777654333222 23445555555554443
Q ss_pred ---cCCcCccCCCCCCEEECCCCCCccCCCcc-CcCCCCCCEEEcccCcCc
Q 007553 275 ---PIPPTIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHNSLS 321 (599)
Q Consensus 275 ---~~~~~~~~~~~L~~L~ls~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 321 (599)
.+|..+..+++|++|++++|+++. +|.. +..+++|+.|++++|++.
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCcc
Confidence 233344445555555555555542 2222 344444444444444444
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-30 Score=252.01 Aligned_cols=280 Identities=24% Similarity=0.234 Sum_probs=145.8
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCcc--CCccccCCCcCCEEeee
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGL--IPSSIGNLTNLTHLDLS 124 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~ 124 (599)
+.++++++.++ .+|..+ .++|++|+|++|.++...+..|.++++|++|++++|++... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666666 455433 25677777777777644444466777777777777766532 24455556666666666
Q ss_pred cccccccCCccccCCCcccEEecccCccCCCCc-ccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccc-
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP-STLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTG- 202 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~- 202 (599)
+|.+. .+|..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 66665 344446666666666666666654433 345555566666666555555544555555555555555555543
Q ss_pred cCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccC
Q 007553 203 PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGY 282 (599)
Q Consensus 203 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 282 (599)
..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+. .+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~~ 221 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF------------------------PYKC 221 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG------------------------GGTT
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh------------------------hccC
Confidence 2344444444444444444444444344444444444444444444433333 3444
Q ss_pred CCCCCEEECCCCCCccCCCccCcCCC-CCCEEEcccCcCccCCC--ccccCCCCCCEEeCCCccccccCCcccCC
Q 007553 283 LTNLTSLNLGYNQLNSSIPPELMNCS-QLQNLAVNHNSLSGSIP--SEIGNLIHLRQLDLSHNFINGTIPSQLGK 354 (599)
Q Consensus 283 ~~~L~~L~ls~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 354 (599)
+++|++|++++|.+.+..|..+..++ +|+.|++++|.+.+..+ .....+...+.+.+..+.+....|..+..
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 44455555555555444444444442 45555555555543211 01112223333444445555555554443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-30 Score=258.26 Aligned_cols=279 Identities=23% Similarity=0.207 Sum_probs=234.7
Q ss_pred CCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcE
Q 007553 17 CFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYD 96 (599)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 96 (599)
.|+...+.+.++ +.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++
T Consensus 29 ~C~~~~~c~~~~-~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSS-GSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCS-TTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCC-CCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 456666788887 7766 6776654 58999999999999777778999999999999999999888888999999999
Q ss_pred EEeecCcCCccCCccccCCCcCCEEeeecccccccCC-ccccCCCcccEEecccCc-cCCCCcccccCCCCCCeeecccc
Q 007553 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP-QEVGNLKNLVSLFLDNNN-LTGPIPSTLYHLNQLSTLYLAYN 174 (599)
Q Consensus 97 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n 174 (599)
|++++|++++..+..|.++++|++|++++|.+....+ ..+.++++|++|++++|+ +....+..|..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 9999999997655668999999999999999986544 478999999999999994 66666778999999999999999
Q ss_pred cccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccC---CCCCCCCEEEccCCcCCC-
Q 007553 175 NLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI---GNLTYLTSLDLSSNQLSG- 250 (599)
Q Consensus 175 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~- 250 (599)
.+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+ ...+.++.++++++.+.+
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 9998888999999999999999999875444445668999999999999987654433 346788999999998876
Q ss_pred ---CCCcccCCCCCCCEEeccCcceeecCCcC-ccCCCCCCEEECCCCCCccCC
Q 007553 251 ---LLPREVGNLKYLDSLSLDRNNLIGPIPPT-IGYLTNLTSLNLGYNQLNSSI 300 (599)
Q Consensus 251 ---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~ls~n~~~~~~ 300 (599)
.+|..+..+++|+.|++++|.++ .+|.. |..+++|++|++++|.+.+..
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 36777889999999999999998 55555 588999999999999988643
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=248.98 Aligned_cols=281 Identities=25% Similarity=0.223 Sum_probs=190.7
Q ss_pred CEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeeccccccc--CCccccCCCcccEEecc
Q 007553 71 LELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR--LPQEVGNLKNLVSLFLD 148 (599)
Q Consensus 71 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~l~ 148 (599)
+.++++++.++ .+|..+. ++|++|++++|++....+..|.++++|++|++++|.+... .+..+.++++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666665 3444332 4566666666666544334455666666666666655422 13334445555555555
Q ss_pred cCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCc-hhccCCCCCCEEeCCCCcCccc
Q 007553 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIP-STIGFLNLLDELRLSHNRLDGP 227 (599)
Q Consensus 149 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 227 (599)
+|.+.. ++ ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+.
T Consensus 87 ~n~i~~-l~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 87 FNGVIT-MS------------------------SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp SCSEEE-EE------------------------EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCcccc-Ch------------------------hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 554442 23 334445555555555555543332 3455666667777777776666
Q ss_pred CcccCCCCCCCCEEEccCCcCCC-CCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcC
Q 007553 228 IPPTIGNLTYLTSLDLSSNQLSG-LLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN 306 (599)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~ 306 (599)
.+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 66677777888888888887775 46777888888999999999888877888888999999999999999877778899
Q ss_pred CCCCCEEEcccCcCccCCCccccCCC-CCCEEeCCCccccccCCc--ccCCCCCCCEEECCCCcCcccCCccCCCC
Q 007553 307 CSQLQNLAVNHNSLSGSIPSEIGNLI-HLRQLDLSHNFINGTIPS--QLGKIPNVSEVDVSKNNLSGVIPKSVFRV 379 (599)
Q Consensus 307 l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 379 (599)
+++|+.|++++|.+++..|..+..++ +|+.|++++|.+++..+. ....+...+.+.+..+.+.|..|..+...
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 99999999999999999898888884 999999999999865321 11122334445666788888888776554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-29 Score=247.85 Aligned_cols=226 Identities=23% Similarity=0.257 Sum_probs=168.1
Q ss_pred CCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEe
Q 007553 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLD 122 (599)
Q Consensus 43 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 122 (599)
.++++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.+. .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 356677777777776 56666666777777777777776 66666777777777777777776 5566677777777777
Q ss_pred eecccccccCCcccc---------CCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEE
Q 007553 123 LSLNQLSGRLPQEVG---------NLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSL 193 (599)
Q Consensus 123 l~~n~i~~~~~~~l~---------~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 193 (599)
+++|++.+.+|..+. ++++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 777666666665544 3778888888888777 567777778888888888887775 45567778888888
Q ss_pred EccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCccee
Q 007553 194 LLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273 (599)
Q Consensus 194 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 273 (599)
++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888777777777888888888888888887788877888888888888888888888888888888888888766543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-29 Score=247.80 Aligned_cols=226 Identities=24% Similarity=0.300 Sum_probs=172.7
Q ss_pred CCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEe
Q 007553 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLF 146 (599)
Q Consensus 67 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 146 (599)
.+++++|+|++|.++ .+|..+.++++|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467778888888777 56767777888888888888777 66777777888888888888777 5677777788888888
Q ss_pred cccCccCCCCcccccC---------CCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEE
Q 007553 147 LDNNNLTGPIPSTLYH---------LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDEL 217 (599)
Q Consensus 147 l~~n~i~~~~~~~l~~---------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 217 (599)
+++|++.+.+|..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+++ +|..+..+++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 8887777777766543 777888888888777 566677777888888888887774 55567777788888
Q ss_pred eCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCc
Q 007553 218 RLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLN 297 (599)
Q Consensus 218 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~ 297 (599)
++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.+++..+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88887777777777777888888888887777777777777888888888887777777877878888888877765443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-28 Score=252.61 Aligned_cols=249 Identities=24% Similarity=0.204 Sum_probs=200.8
Q ss_pred CCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeee
Q 007553 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124 (599)
Q Consensus 45 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 124 (599)
..+.+++++..++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++.+..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567888888877 5665443 678888888888887778888888888888888888887777788888888888888
Q ss_pred cccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccc-ccccCccccCCCCCCCEEEccCCccccc
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNN-LVGPLPKEVGNLKNLDSLLLNRNNLTGP 203 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 203 (599)
+|.++...++.+.++++|++|++++|.++...+..|..+++|++|++++|. +....+..|..+++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 888887777778888888888888888886666678888888888888844 4433444678888888888888888753
Q ss_pred CchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCC
Q 007553 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYL 283 (599)
Q Consensus 204 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 283 (599)
| .+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|.+++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 47778888899999998888888888888999999999998888888888888999999999998887666777888
Q ss_pred CCCCEEECCCCCCcc
Q 007553 284 TNLTSLNLGYNQLNS 298 (599)
Q Consensus 284 ~~L~~L~ls~n~~~~ 298 (599)
++|+.|++++|.+.-
T Consensus 290 ~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 290 RYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEccCCCcCC
Confidence 899999999887753
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=243.78 Aligned_cols=225 Identities=27% Similarity=0.285 Sum_probs=146.4
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecc
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 126 (599)
++++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56666666665 444332 356667777777666655556666667777777776666655666666666777777666
Q ss_pred c-ccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCc
Q 007553 127 Q-LSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIP 205 (599)
Q Consensus 127 ~-i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 205 (599)
. +....|..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 555556666666777777777776666556666666677777777666665555556666667777777766665544
Q ss_pred hhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceee
Q 007553 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG 274 (599)
Q Consensus 206 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 274 (599)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 556666666777777766666666666666777777777777665544556666666667666666654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=251.10 Aligned_cols=248 Identities=26% Similarity=0.239 Sum_probs=211.3
Q ss_pred CCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeee
Q 007553 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124 (599)
Q Consensus 45 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 124 (599)
..+.+++++..++ .+|..+. +++++|+|++|++++..+..|.++++|++|+|++|++.+..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4678888888887 6776553 688999999999988888888999999999999999887777888899999999999
Q ss_pred cccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccc-ccccCccccCCCCCCCEEEccCCccccc
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNN-LVGPLPKEVGNLKNLDSLLLNRNNLTGP 203 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 203 (599)
+|.++...++.+.++++|++|++++|.++...+..|..+++|++|++++|. +....+..|..+++|++|++++|.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 999887777778899999999999999887767788889999999998854 443444578889999999999998874
Q ss_pred CchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCC
Q 007553 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYL 283 (599)
Q Consensus 204 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 283 (599)
+| .+..+++|+.|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|.+++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 47788899999999999998888889999999999999999998888889999999999999999987777778889
Q ss_pred CCCCEEECCCCCCc
Q 007553 284 TNLTSLNLGYNQLN 297 (599)
Q Consensus 284 ~~L~~L~ls~n~~~ 297 (599)
++|+.|+|++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 99999999999875
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=253.25 Aligned_cols=248 Identities=21% Similarity=0.180 Sum_probs=216.1
Q ss_pred CCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecc
Q 007553 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLD 148 (599)
Q Consensus 69 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 148 (599)
..+.++.++..++ .+|..+. ++|++|+|++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4578888888887 5676554 689999999999998888889999999999999999998888889999999999999
Q ss_pred cCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCc-ccccCchhccCCCCCCEEeCCCCcCccc
Q 007553 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN-LTGPIPSTIGFLNLLDELRLSHNRLDGP 227 (599)
Q Consensus 149 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 227 (599)
+|.++...+..|..+++|++|+|++|.+....+..|..+++|++|++++|. +....+..+..+++|+.|++++|.+.+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 999997777778899999999999999987777788999999999999854 4434445688899999999999999854
Q ss_pred CcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCC
Q 007553 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNC 307 (599)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 307 (599)
| .+..+++|++|++++|.+++..|..|..+++|+.|+|++|.+.+..+..|..+++|+.|+|++|++++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 4 58889999999999999998888899999999999999999998888889999999999999999987777778889
Q ss_pred CCCCEEEcccCcCc
Q 007553 308 SQLQNLAVNHNSLS 321 (599)
Q Consensus 308 ~~L~~L~l~~n~l~ 321 (599)
++|+.|++++|++.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 99999999999875
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=250.33 Aligned_cols=248 Identities=23% Similarity=0.230 Sum_probs=217.1
Q ss_pred CCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecc
Q 007553 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLD 148 (599)
Q Consensus 69 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 148 (599)
..+.++.++..++ .+|..+. ++++.|+|++|++....+..|.++++|++|++++|.+....++.|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4678888888888 6676664 689999999999998888889999999999999999998888889999999999999
Q ss_pred cCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCc-ccccCchhccCCCCCCEEeCCCCcCccc
Q 007553 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN-LTGPIPSTIGFLNLLDELRLSHNRLDGP 227 (599)
Q Consensus 149 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 227 (599)
+|+++...+..|..+++|++|+|++|.+....+..|..+++|++|++++|. +....+..+..+++|+.|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999997777789999999999999999988777788999999999999854 44344457888999999999999998 4
Q ss_pred CcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCC
Q 007553 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNC 307 (599)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 307 (599)
+| .+..+++|++|++++|.+++..|..|..+++|+.|+|++|.+.+..+..|..+++|++|+|++|++++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 58889999999999999998888899999999999999999998888889999999999999999998777778889
Q ss_pred CCCCEEEcccCcCc
Q 007553 308 SQLQNLAVNHNSLS 321 (599)
Q Consensus 308 ~~L~~L~l~~n~l~ 321 (599)
++|+.|+|++|++.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 99999999999875
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-29 Score=242.14 Aligned_cols=254 Identities=24% Similarity=0.234 Sum_probs=212.1
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeec
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 101 (599)
++++..+ +.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~~~c~~-~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQ-QGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCS-SCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCc-CCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 6777776 6665 556544 46899999999999987778899999999999999999988888999999999999999
Q ss_pred Cc-CCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccC
Q 007553 102 NK-LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPL 180 (599)
Q Consensus 102 n~-~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 180 (599)
|+ +....|..|..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 77666888999999999999999999888888999999999999999999877777899999999999999998777
Q ss_pred ccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCC
Q 007553 181 PKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLK 260 (599)
Q Consensus 181 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 260 (599)
+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+.. ....
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 777899999999999999999888899999999999999999999877777999999999999999987543211 0011
Q ss_pred CCCEEeccCcceeecCCcCc
Q 007553 261 YLDSLSLDRNNLIGPIPPTI 280 (599)
Q Consensus 261 ~L~~L~L~~n~l~~~~~~~~ 280 (599)
.++.+....+.+....|..+
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHHCCSEECCCBEEESGGG
T ss_pred HHHhcccccCccccCCchHh
Confidence 23333445555555555544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-29 Score=249.06 Aligned_cols=249 Identities=22% Similarity=0.218 Sum_probs=193.4
Q ss_pred cCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccc-ccCCccCC-------CCCCCcEEEeecCcCCccCCcc
Q 007553 40 TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILN-GSIPLEFG-------NLKDLYDLRLQGNKLDGLIPSS 111 (599)
Q Consensus 40 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~p~~~~-------~l~~L~~L~L~~n~~~~~~~~~ 111 (599)
++..++|+.|++++|.+ .+|..+... |++|+|++|.+. ..+|..+. ++++|++|+|++|++.+.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34566788888888888 566655433 888888888884 34555444 6788888888888888777776
Q ss_pred c--cCCCcCCEEeeecccccccCCccccCC-----CcccEEecccCccCCCCcccccCCCCCCeeeccccccccc--Ccc
Q 007553 112 I--GNLTNLTHLDLSLNQLSGRLPQEVGNL-----KNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP--LPK 182 (599)
Q Consensus 112 ~--~~l~~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~ 182 (599)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..|..+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 7888888888888888866 6667766 8888888888888877777888888888888888887653 233
Q ss_pred cc--CCCCCCCEEEccCCcccc--cCc-hhccCCCCCCEEeCCCCcCcccCc-ccCCCCCCCCEEEccCCcCCCCCCccc
Q 007553 183 EV--GNLKNLDSLLLNRNNLTG--PIP-STIGFLNLLDELRLSHNRLDGPIP-PTIGNLTYLTSLDLSSNQLSGLLPREV 256 (599)
Q Consensus 183 ~l--~~l~~L~~L~l~~n~~~~--~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l 256 (599)
.+ ..+++|++|++++|.+++ ..+ ..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 34 788899999999998873 222 344677899999999999987664 45667889999999999998 677766
Q ss_pred CCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCcc
Q 007553 257 GNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 298 (599)
Q Consensus 257 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~ 298 (599)
. ++|+.|+|++|++++. |. +..+++|++|++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5 7899999999999866 55 8889999999999998875
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-29 Score=247.20 Aligned_cols=249 Identities=24% Similarity=0.267 Sum_probs=209.3
Q ss_pred CCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCC-ccCCcccc-------CCCcCCEEeeecccccccCCcc
Q 007553 64 IGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD-GLIPSSIG-------NLTNLTHLDLSLNQLSGRLPQE 135 (599)
Q Consensus 64 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~~~~~~-------~l~~L~~L~l~~n~i~~~~~~~ 135 (599)
++..++|++|++++|.+ .+|..+... |++|+|++|.+. ..+|..+. ++++|++|++++|.+++..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45667899999999999 677766544 899999999984 34565555 7899999999999999888887
Q ss_pred c--cCCCcccEEecccCccCCCCcccccCC-----CCCCeeecccccccccCccccCCCCCCCEEEccCCccccc--Cch
Q 007553 136 V--GNLKNLVSLFLDNNNLTGPIPSTLYHL-----NQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGP--IPS 206 (599)
Q Consensus 136 l--~~l~~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~ 206 (599)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 8999999999999999987 7777766 8999999999999988888999999999999999997764 333
Q ss_pred hc--cCCCCCCEEeCCCCcCccc--C-cccCCCCCCCCEEEccCCcCCCCCC-cccCCCCCCCEEeccCcceeecCCcCc
Q 007553 207 TI--GFLNLLDELRLSHNRLDGP--I-PPTIGNLTYLTSLDLSSNQLSGLLP-REVGNLKYLDSLSLDRNNLIGPIPPTI 280 (599)
Q Consensus 207 ~~--~~l~~L~~L~l~~n~l~~~--~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~ 280 (599)
.+ ..+++|+.|++++|.+++. . ...+..+++|++|++++|.+++..| ..+..+++|+.|+|++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 44 7889999999999999832 2 2345678999999999999998764 45677899999999999998 777776
Q ss_pred cCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCcc
Q 007553 281 GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322 (599)
Q Consensus 281 ~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 322 (599)
. ++|++|++++|++++. |. +..+++|+.|++++|.+++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5 8999999999999876 55 8899999999999999875
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-29 Score=249.31 Aligned_cols=254 Identities=21% Similarity=0.185 Sum_probs=113.1
Q ss_pred EEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccc
Q 007553 49 LDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL 128 (599)
Q Consensus 49 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i 128 (599)
++++.+.+....+..+..+++|++|+|++|.+++..|..|.++++|++|+|++|++.+..+ +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3344444332222333334445555555554444434444445555555555554443322 44444555555555444
Q ss_pred cccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhc
Q 007553 129 SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTI 208 (599)
Q Consensus 129 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 208 (599)
++.. ..++|++|++++|.+++..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 93 ~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 93 QELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 4221 124455555555544433221 13344444444444444333344444444444444444443333322
Q ss_pred -cCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCC
Q 007553 209 -GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLT 287 (599)
Q Consensus 209 -~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 287 (599)
..++.|+.|++++|.+++. + .... +++|+.|+|++|.+.+. +..+..+++|+
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~-~-~~~~------------------------l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~ 217 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV-K-GQVV------------------------FAKLKTLDLSSNKLAFM-GPEFQSAAGVT 217 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE-E-CCCC------------------------CTTCCEEECCSSCCCEE-CGGGGGGTTCS
T ss_pred hhccCcCCEEECCCCcCccc-c-cccc------------------------cccCCEEECCCCcCCcc-hhhhcccCccc
Confidence 2334444444444444322 1 1122 44444444444444432 22244455555
Q ss_pred EEECCCCCCccCCCccCcCCCCCCEEEcccCcCc-cCCCccccCCCCCCEEeCC
Q 007553 288 SLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLS-GSIPSEIGNLIHLRQLDLS 340 (599)
Q Consensus 288 ~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 340 (599)
+|++++|.+++ +|..+..+++|+.|++++|.+. +.++..+..+++|+.+++.
T Consensus 218 ~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred EEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 55555555542 3444555555555555555555 4444555555555555555
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-26 Score=242.20 Aligned_cols=264 Identities=28% Similarity=0.337 Sum_probs=146.6
Q ss_pred CCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeee
Q 007553 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124 (599)
Q Consensus 45 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 124 (599)
++++|++++|.++ .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|++++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4666666666666 5555443 56666666666666 3443 35666666666666653 333 45666666666
Q ss_pred cccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccC
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPI 204 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 204 (599)
+|.+++. |. .+++|+.|++++|+++. +|.. +++|++|++++|.+.+. |. .+++|+.|++++|.+++ +
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-C
Confidence 6666642 22 44666666666666654 3332 35666666666665532 22 23456666666666553 3
Q ss_pred chhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCC
Q 007553 205 PSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLT 284 (599)
Q Consensus 205 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 284 (599)
| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++. +|. .+++|+.|+|++|.+++ +| ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence 3 334556666666666553 222 23556666666666553 332 13456666666665553 33 2345
Q ss_pred CCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCccc
Q 007553 285 NLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 352 (599)
Q Consensus 285 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 352 (599)
+|+.|++++|.++. +|. .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+
T Consensus 242 ~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 242 ELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred cCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 56666666666552 333 3455666666666655 445555556666666666666655544443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-28 Score=244.77 Aligned_cols=265 Identities=22% Similarity=0.222 Sum_probs=178.5
Q ss_pred EEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCc
Q 007553 72 ELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN 151 (599)
Q Consensus 72 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 151 (599)
.++++.+.+....+..+..+++|++|+|++|++.+..|..|..+++|++|++++|.+++..+
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------ 75 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------------------ 75 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE------------------
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh------------------
Confidence 33444444443333333444455555555555554444445555555555555555443322
Q ss_pred cCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCccc
Q 007553 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPT 231 (599)
Q Consensus 152 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 231 (599)
+..+++|++|++++|.+.+.. ..++|++|++++|.+++..+. .+++|+.|++++|.+++..+..
T Consensus 76 --------~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 76 --------LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp --------ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBC
T ss_pred --------hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchh
Confidence 444455555555555444221 125666666666665543332 2456777777777777666667
Q ss_pred CCCCCCCCEEEccCCcCCCCCCccc-CCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCC
Q 007553 232 IGNLTYLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQL 310 (599)
Q Consensus 232 ~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L 310 (599)
+..+++|++|++++|.+++..+..+ ..+++|++|+|++|.+++.. ....+++|++|++++|.+++. |..+..+++|
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L 216 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGV 216 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcc
Confidence 7778888888888888877666655 36788999999999887652 233589999999999999864 5568899999
Q ss_pred CEEEcccCcCccCCCccccCCCCCCEEeCCCcccc-ccCCcccCCCCCCCEEECCC-CcCcccCCc
Q 007553 311 QNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN-GTIPSQLGKIPNVSEVDVSK-NNLSGVIPK 374 (599)
Q Consensus 311 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~ls~-n~l~~~~~~ 374 (599)
+.|++++|.++ .+|..+..+++|+.|++++|.++ +.++..+..++.|+.+++++ +.+++..|.
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999999999 56778899999999999999999 77888888899999999984 445555544
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=240.33 Aligned_cols=267 Identities=28% Similarity=0.333 Sum_probs=223.9
Q ss_pred CCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEec
Q 007553 68 RDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFL 147 (599)
Q Consensus 68 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 147 (599)
.++++|++++|.++ .+|..+. ++|++|+|++|.++. +|. .+++|++|++++|.++. +|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 46999999999999 6777665 899999999999984 554 57999999999999984 554 7799999999
Q ss_pred ccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCccc
Q 007553 148 DNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGP 227 (599)
Q Consensus 148 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 227 (599)
++|.+++. |. .+++|+.|++++|.+.. +|.. +++|++|++++|.+++ +|. .+.+|+.|++++|.+++
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 99999864 44 57899999999999886 4443 4899999999999985 343 35789999999999985
Q ss_pred CcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCC
Q 007553 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNC 307 (599)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 307 (599)
+| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|.. +++|+.|++++|.+++ +| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCC
Confidence 45 567899999999999985 4443 478999999999988 44543 5889999999999986 55 456
Q ss_pred CCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCCC
Q 007553 308 SQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR 378 (599)
Q Consensus 308 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 378 (599)
++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 89999999999998 4555 5789999999999999 77888999999999999999999887765543
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-27 Score=247.10 Aligned_cols=232 Identities=24% Similarity=0.228 Sum_probs=102.3
Q ss_pred cCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEcc
Q 007553 117 NLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLN 196 (599)
Q Consensus 117 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 196 (599)
+|++|++++|.+.+..|..|.++++|++|+|++|.+++..| +..+++|++|+|++|.+.+.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 44444444444444444444444444444444444443322 444444555555444444221 11444555555
Q ss_pred CCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccC-CCCCCCEEeccCcceeec
Q 007553 197 RNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVG-NLKYLDSLSLDRNNLIGP 275 (599)
Q Consensus 197 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~ 275 (599)
+|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 5444433222 223444555555555444444444445555555555554444444433 344445555554444433
Q ss_pred CCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCcccc-ccCCcccCC
Q 007553 276 IPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN-GTIPSQLGK 354 (599)
Q Consensus 276 ~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 354 (599)
.+ ...+++|++|+|++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 11 12244444455544444432 2224444444444444444442 3333444444444444444444 333333333
Q ss_pred CCCCCEEE
Q 007553 355 IPNVSEVD 362 (599)
Q Consensus 355 ~~~L~~L~ 362 (599)
++.++.++
T Consensus 261 l~~L~~l~ 268 (487)
T 3oja_A 261 NQRVQTVA 268 (487)
T ss_dssp CHHHHHHH
T ss_pred CCCCcEEe
Confidence 33333333
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-27 Score=249.61 Aligned_cols=215 Identities=25% Similarity=0.233 Sum_probs=90.5
Q ss_pred CCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecc
Q 007553 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLD 148 (599)
Q Consensus 69 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 148 (599)
+|++|+|++|.+++..|..|..+++|++|+|++|.+.+..| +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 34444444444443333334444444444444444333222 334444444444444433211 11444444444
Q ss_pred cCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhcc-CCCCCCEEeCCCCcCccc
Q 007553 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIG-FLNLLDELRLSHNRLDGP 227 (599)
Q Consensus 149 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~ 227 (599)
+|.+++..+. .+++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..+. .++.|+.|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 4444433221 233444444444444444444444444444444444444443333332 344444444544444433
Q ss_pred CcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCc
Q 007553 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLN 297 (599)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~ 297 (599)
+ .+..+++|+.|++++|.+++. |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+.
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 -K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred -c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 1 122344555555555555432 2224444444445554444442 3333444444444444444443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=215.23 Aligned_cols=133 Identities=26% Similarity=0.285 Sum_probs=61.3
Q ss_pred CCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeee
Q 007553 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124 (599)
Q Consensus 45 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 124 (599)
+|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++.+..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444444555555555555555544444444455555555555555444444444444444444444
Q ss_pred cccccccCCccccCCCcccEEecccCccCCC-CcccccCCCCCCeeeccccccc
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGP-IPSTLYHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~ 177 (599)
+|.+.+..+..+.++++|++|++++|.+++. +|..+..+++|++|++++|.+.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 4444433333344444444444444444332 2333444444444444444433
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-25 Score=214.79 Aligned_cols=226 Identities=23% Similarity=0.226 Sum_probs=186.7
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecc
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 126 (599)
...+..+..++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++.+..+..|.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 35666677676 5666553 57999999999998777778899999999999999998777778899999999999999
Q ss_pred cccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccccccc-CccccCCCCCCCEEEccCCcccccCc
Q 007553 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP-LPKEVGNLKNLDSLLLNRNNLTGPIP 205 (599)
Q Consensus 127 ~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~ 205 (599)
.+.+..++.+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 99888888899999999999999999877666788899999999999998764 57888899999999999999887766
Q ss_pred hhccCCCCCC----EEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecC
Q 007553 206 STIGFLNLLD----ELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276 (599)
Q Consensus 206 ~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 276 (599)
..+..+..|+ .|++++|.+.+..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 6676666666 89999999986555444 3458999999999998766667788999999999999887643
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-29 Score=271.41 Aligned_cols=379 Identities=16% Similarity=0.105 Sum_probs=196.7
Q ss_pred cccccCCCCCcEEeeCCCCCCe--ecCCcccC------------CCCCCCEEEcccCcCcccCCcCCCC-CCC-CCEEec
Q 007553 12 QLNFTCFPNLVTFRIWGTRFLS--GRIPSETG------------ALSRLKVLDLSYNRLTGTIPSEIGS-LRD-LLELNL 75 (599)
Q Consensus 12 ~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~------------~~~~L~~L~l~~n~~~~~~~~~~~~-l~~-L~~L~L 75 (599)
...+.++++|++|++.+|..+. +.+|..++ .+++|++|+|++|.+++..+..+.. +++ |++|+|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 3445666777777776633221 23333333 5667777777777665544444433 233 666666
Q ss_pred cCCcc-cc-cCCccCCCCCCCcEEEeecCcCCcc----CCccccCCCcCCEEeeecccccc----cCCccccCCCcccEE
Q 007553 76 SYNIL-NG-SIPLEFGNLKDLYDLRLQGNKLDGL----IPSSIGNLTNLTHLDLSLNQLSG----RLPQEVGNLKNLVSL 145 (599)
Q Consensus 76 ~~n~~-~~-~~p~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L 145 (599)
++|.. +. .++....++++|++|+|++|.+.+. ++..+..+++|++|++++|.+.+ .++..+.++++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 66641 11 1111123556666666666655433 22233455666666666665542 223334455666666
Q ss_pred ecccCccCCCCcccccCCCCCCeeecccccc--------------------------cccCccccCCCCCCCEEEccCCc
Q 007553 146 FLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL--------------------------VGPLPKEVGNLKNLDSLLLNRNN 199 (599)
Q Consensus 146 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~--------------------------~~~~~~~l~~l~~L~~L~l~~n~ 199 (599)
++++|.+.+ ++..+..+++|++|+++.... ...++..+..+++|++|++++|.
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 666665543 344455555555555543211 11233334445555555555555
Q ss_pred ccccCc-hhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccC-----------CcCCCC-CCcccCCCCCCCEEe
Q 007553 200 LTGPIP-STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS-----------NQLSGL-LPREVGNLKYLDSLS 266 (599)
Q Consensus 200 ~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~-~~~~l~~l~~L~~L~ 266 (599)
+++... ..+..+++|+.|+++++-..+.++..+..+++|++|++++ +.+++. ++.....+++|++|+
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence 433221 2234555555555552211112222234456666666662 333322 111123466677777
Q ss_pred ccCcceeecCCcCccC-CCCCCEEECC----CCCCccC-----CCccCcCCCCCCEEEcccCc--CccCCCcccc-CCCC
Q 007553 267 LDRNNLIGPIPPTIGY-LTNLTSLNLG----YNQLNSS-----IPPELMNCSQLQNLAVNHNS--LSGSIPSEIG-NLIH 333 (599)
Q Consensus 267 L~~n~l~~~~~~~~~~-~~~L~~L~ls----~n~~~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~ 333 (599)
++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+..+. .+++
T Consensus 385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~ 464 (592)
T 3ogk_B 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464 (592)
T ss_dssp EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence 7666666544444433 6677777774 4555542 11224456777777776433 4443333332 3677
Q ss_pred CCEEeCCCccccc-cCCcccCCCCCCCEEECCCCcCcccCCc----cCCCCCeeecccCccce
Q 007553 334 LRQLDLSHNFING-TIPSQLGKIPNVSEVDVSKNNLSGVIPK----SVFRVPGLKWSENNLEV 391 (599)
Q Consensus 334 L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~~~l~~~~n~~~~ 391 (599)
|+.|++++|.+++ .++..+..+++|+.|++++|.+++.... .+..++.+++++|+++.
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 8888888887765 2344456677788888888877544221 23456777777776543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=209.61 Aligned_cols=202 Identities=30% Similarity=0.314 Sum_probs=101.7
Q ss_pred CCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeec
Q 007553 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125 (599)
Q Consensus 46 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 125 (599)
.++++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|++....+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 344444444444 2333221 3444444444444433333444444444444444444433333344444455555555
Q ss_pred ccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCc
Q 007553 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIP 205 (599)
Q Consensus 126 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 205 (599)
|.+....+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 44444444444445555555555555554444444555555555555555554444445555555555555555554444
Q ss_pred hhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCC
Q 007553 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSG 250 (599)
Q Consensus 206 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 250 (599)
..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 445555666666666666654444456666666666666666543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-29 Score=269.72 Aligned_cols=353 Identities=13% Similarity=0.063 Sum_probs=234.9
Q ss_pred CCCCCcEEeeCCCCCCeecCCcccCC-CCC-CCEEEcccCc-Ccc-cCCcCCCCCCCCCEEeccCCcccccC----CccC
Q 007553 17 CFPNLVTFRIWGTRFLSGRIPSETGA-LSR-LKVLDLSYNR-LTG-TIPSEIGSLRDLLELNLSYNILNGSI----PLEF 88 (599)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~----p~~~ 88 (599)
++++|++|++++ +.+++..+..+.. ++. |++|+|++|. ++. .++.....+++|++|+|++|.+++.. +..+
T Consensus 110 ~~~~L~~L~L~~-~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRR-MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEES-CBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeec-cEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 678888888887 6666555555544 333 7777777665 211 11122235677777777777665432 2223
Q ss_pred CCCCCCcEEEeecCcCCc----cCCccccCCCcCCEEeeecccccccCCccccCCCc-----------------------
Q 007553 89 GNLKDLYDLRLQGNKLDG----LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKN----------------------- 141 (599)
Q Consensus 89 ~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~----------------------- 141 (599)
..+++|++|++++|.+.+ .++..+.++++|++|++++|.+.+ ++..+.++++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 456667777777666652 223334456667777766666553 3344444444
Q ss_pred ----ccEEecccCccCCCCcccccCCCCCCeeecccccccccCc-cccCCCCCCCEEEccCCcccccCchhccCCCCCCE
Q 007553 142 ----LVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLP-KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDE 216 (599)
Q Consensus 142 ----L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 216 (599)
|+.|+++++. ...+|..+..+++|++|++++|.+.+... ..+..+++|++|++..+...+.++..+..+++|+.
T Consensus 268 ~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 4444444432 23456667788999999999998664333 34688999999999944333334445567899999
Q ss_pred EeCCC-----------CcCccc-CcccCCCCCCCCEEEccCCcCCCCCCcccCC-CCCCCEEecc----Ccceeec----
Q 007553 217 LRLSH-----------NRLDGP-IPPTIGNLTYLTSLDLSSNQLSGLLPREVGN-LKYLDSLSLD----RNNLIGP---- 275 (599)
Q Consensus 217 L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~---- 275 (599)
|++++ +.+++. +......+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 99993 455533 2222456899999999999998766666655 8899999996 5566642
Q ss_pred -CCcCccCCCCCCEEECCCCC--CccCCCccC-cCCCCCCEEEcccCcCcc-CCCccccCCCCCCEEeCCCcccccc-CC
Q 007553 276 -IPPTIGYLTNLTSLNLGYNQ--LNSSIPPEL-MNCSQLQNLAVNHNSLSG-SIPSEIGNLIHLRQLDLSHNFINGT-IP 349 (599)
Q Consensus 276 -~~~~~~~~~~L~~L~ls~n~--~~~~~~~~~-~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~ 349 (599)
++..+..+++|++|++++|. +++..+..+ ..+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 22335668999999998654 554433333 347899999999999876 3445567889999999999998754 34
Q ss_pred cccCCCCCCCEEECCCCcCcccC
Q 007553 350 SQLGKIPNVSEVDVSKNNLSGVI 372 (599)
Q Consensus 350 ~~~~~~~~L~~L~ls~n~l~~~~ 372 (599)
.....+++|+.|++++|+++...
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTC
T ss_pred HHHHhcCccCeeECcCCcCCHHH
Confidence 44567899999999999988663
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-24 Score=205.66 Aligned_cols=216 Identities=28% Similarity=0.270 Sum_probs=139.6
Q ss_pred cccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCC
Q 007553 6 NAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIP 85 (599)
Q Consensus 6 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 85 (599)
+....+.....+....+++++++ +.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.++...+
T Consensus 3 ~~C~~~~~~C~c~~~~~~l~~~~-~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCNNNKNSVDCSS-KKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEETTTTEEECTT-SCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeCCCCCEEEccC-CCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 33333333344445566677766 5555 3554442 466777777777765555566677777777777777765555
Q ss_pred ccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCC
Q 007553 86 LEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165 (599)
Q Consensus 86 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 165 (599)
..|.++++|++|++++|++....+..|..+++|++|++++|.++...+..+.++++|++|++++|.+++..+..|..+++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 55666777777777777776555556666777777777777776666666667777777777777766555555666777
Q ss_pred CCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCc
Q 007553 166 LSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD 225 (599)
Q Consensus 166 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 225 (599)
|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..++.|+.|++++|.+.
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 777777777766655555666777777777777766555555666677777777777665
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=209.27 Aligned_cols=229 Identities=24% Similarity=0.247 Sum_probs=170.8
Q ss_pred CCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEE
Q 007553 19 PNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLR 98 (599)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 98 (599)
+.+..+++.. +.+.+.. ....+++|+.|++++|.++. ++ .+..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 19 ~~l~~l~l~~-~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKK-KSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTC-SCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHhcC-ccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 3444555555 4443332 24567788888888887763 33 467788888888888887752 3677788888888
Q ss_pred eecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccc
Q 007553 99 LQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG 178 (599)
Q Consensus 99 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 178 (599)
+++|.+.+..+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 88888877666667788888888888888887767777888888888888888887666667788888888888888887
Q ss_pred cCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCC
Q 007553 179 PLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGN 258 (599)
Q Consensus 179 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 258 (599)
..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.++|.+|.+++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 666667788888888888888887777777888888888888887663 3557788888888888888887776
Q ss_pred CCC
Q 007553 259 LKY 261 (599)
Q Consensus 259 l~~ 261 (599)
++.
T Consensus 245 ~~~ 247 (272)
T 3rfs_A 245 VAP 247 (272)
T ss_dssp BCG
T ss_pred cCC
Confidence 543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=210.60 Aligned_cols=224 Identities=26% Similarity=0.237 Sum_probs=132.4
Q ss_pred CCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeee
Q 007553 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124 (599)
Q Consensus 45 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 124 (599)
.+..+++..+.+.+.. ....+++|+.|++++|.++. + ..+..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 3444555555555332 24556777777777777663 2 2466677777777777776642 356667777777777
Q ss_pred cccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccC
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPI 204 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 204 (599)
+|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 77776655555666677777777776666555555666666666666666666555555556666666666666655544
Q ss_pred chhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCcc
Q 007553 205 PSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIG 281 (599)
Q Consensus 205 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 281 (599)
+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. ++.|+.|+++.|.++|.+|.+++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 44455555555555555555554444455555555555555554422 23445555555555555554443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=203.90 Aligned_cols=202 Identities=30% Similarity=0.267 Sum_probs=99.3
Q ss_pred cCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCC
Q 007553 40 TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLT 119 (599)
Q Consensus 40 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 119 (599)
++++++++.++++++.++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 344555566666665555 3443332 455566666666555555555555666666666655553322 24455555
Q ss_pred EEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCc
Q 007553 120 HLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN 199 (599)
Q Consensus 120 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 199 (599)
+|++++|.+. .+|..+.++++|++|++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555555554 334444555555555555555554444445555555555555555544433444444444545444444
Q ss_pred ccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcC
Q 007553 200 LTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQL 248 (599)
Q Consensus 200 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 248 (599)
+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 44333333344444444444444444 3333333344444444444443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=202.29 Aligned_cols=205 Identities=29% Similarity=0.257 Sum_probs=184.3
Q ss_pred cccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCC
Q 007553 14 NFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKD 93 (599)
Q Consensus 14 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 93 (599)
.++++++++++++.+ +.++ .+|..+. +++++|+|++|.+++..+..|..+++|++|+|++|.+++..+ ...+++
T Consensus 5 ~~~~l~~l~~l~~~~-~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDK-RNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTT-SCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred cccccCCccEEECCC-CCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCc
Confidence 378899999999998 8877 6676663 689999999999998888899999999999999999996544 378999
Q ss_pred CcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccc
Q 007553 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAY 173 (599)
Q Consensus 94 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 173 (599)
|++|++++|++. .+|..+..+++|++|++++|+++...++.|.++++|++|++++|++++..+..|..+++|+.|+|++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999999999998 5678899999999999999999988888899999999999999999988777889999999999999
Q ss_pred ccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcc
Q 007553 174 NNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDG 226 (599)
Q Consensus 174 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 226 (599)
|++....+..|..+++|++|++++|.++ .+|..+.....|+.|++++|.+..
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9999777777889999999999999998 677778888899999999998863
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-27 Score=253.89 Aligned_cols=374 Identities=16% Similarity=0.130 Sum_probs=208.3
Q ss_pred cccCCCCCcEEeeCCCCCCee--cCCcc------------cCCCCCCCEEEcccCcCcccCCcCCC-CCCCCCEEeccCC
Q 007553 14 NFTCFPNLVTFRIWGTRFLSG--RIPSE------------TGALSRLKVLDLSYNRLTGTIPSEIG-SLRDLLELNLSYN 78 (599)
Q Consensus 14 ~l~~l~~L~~L~l~~~~~~~~--~~~~~------------~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n 78 (599)
.+.++++|++|++.++..+.+ ..|.. ...+++|++|+|++|.+++..+..+. .+++|++|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 356777777777776322221 11211 23466777777777777655554443 4677777777777
Q ss_pred -ccccc-CCccCCCCCCCcEEEeecCcCCccCCccc----cCCCcCCEEeeeccc--cccc-CCccccCCCcccEEeccc
Q 007553 79 -ILNGS-IPLEFGNLKDLYDLRLQGNKLDGLIPSSI----GNLTNLTHLDLSLNQ--LSGR-LPQEVGNLKNLVSLFLDN 149 (599)
Q Consensus 79 -~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~~----~~l~~L~~L~l~~n~--i~~~-~~~~l~~l~~L~~L~l~~ 149 (599)
.++.. ++..+.++++|++|+|++|.+.+..+..+ ..+++|++|++++|. +... ++..+.++++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 44322 23333467777777777776654333223 245677777777765 2111 111223457777777776
Q ss_pred CccCCCCcccccCCCCCCeeeccccc--------------------------cc----ccCccccCCCCCCCEEEccCCc
Q 007553 150 NNLTGPIPSTLYHLNQLSTLYLAYNN--------------------------LV----GPLPKEVGNLKNLDSLLLNRNN 199 (599)
Q Consensus 150 n~i~~~~~~~l~~l~~L~~L~l~~n~--------------------------~~----~~~~~~l~~l~~L~~L~l~~n~ 199 (599)
|.....++..+..+++|++|+++.+. +. ..++..+..+++|++|++++|.
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC
Confidence 62212244445555566666543321 11 1122223356788888888887
Q ss_pred ccccC-chhccCCCCCCEEeCCCCcCccc-CcccCCCCCCCCEEEccC---------CcCCCCCCccc-CCCCCCCEEec
Q 007553 200 LTGPI-PSTIGFLNLLDELRLSHNRLDGP-IPPTIGNLTYLTSLDLSS---------NQLSGLLPREV-GNLKYLDSLSL 267 (599)
Q Consensus 200 ~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~l-~~l~~L~~L~L 267 (599)
+++.. ...+..+++|+.|++++| +... ++.....+++|++|+++. +.+++.....+ ..+++|+.|.+
T Consensus 301 l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 301 VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 65432 223557788888888877 3322 222223477788887743 33332222222 23677788877
Q ss_pred cCcceeecCCcCcc-CCCCCCEEECC--C----CCCccCC-----CccCcCCCCCCEEEcccCcCccCCCccccC-CCCC
Q 007553 268 DRNNLIGPIPPTIG-YLTNLTSLNLG--Y----NQLNSSI-----PPELMNCSQLQNLAVNHNSLSGSIPSEIGN-LIHL 334 (599)
Q Consensus 268 ~~n~l~~~~~~~~~-~~~~L~~L~ls--~----n~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L 334 (599)
..|.+++.....+. .+++|+.|+++ + +.+++.. +..+..+++|+.|++++ .+++.....+.. +++|
T Consensus 380 ~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC
T ss_pred hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhc
Confidence 77777654433333 46778888877 3 3443211 11145567778888766 555443334433 6778
Q ss_pred CEEeCCCccccccCCccc-CCCCCCCEEECCCCcCcccCCc----cCCCCCeeecccCcc
Q 007553 335 RQLDLSHNFINGTIPSQL-GKIPNVSEVDVSKNNLSGVIPK----SVFRVPGLKWSENNL 389 (599)
Q Consensus 335 ~~L~l~~n~l~~~~~~~~-~~~~~L~~L~ls~n~l~~~~~~----~~~~~~~l~~~~n~~ 389 (599)
+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... .+..++.+++++|++
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 888887777765444333 4567778888887777543222 234456677776655
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-26 Score=252.15 Aligned_cols=351 Identities=15% Similarity=0.108 Sum_probs=201.7
Q ss_pred cCCCCCcEEeeCCCCCCeecCCcccC-CCCCCCEEEcccC-cCccc-CCcCCCCCCCCCEEeccCCcccccCCccC----
Q 007553 16 TCFPNLVTFRIWGTRFLSGRIPSETG-ALSRLKVLDLSYN-RLTGT-IPSEIGSLRDLLELNLSYNILNGSIPLEF---- 88 (599)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---- 88 (599)
..+++|++|++++ +.+++..+..+. .+++|++|++++| .+++. ++..+..+++|++|+|++|.+++..+..+
T Consensus 102 ~~~~~L~~L~L~~-~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKR-MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEES-CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeC-cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 3567777888877 666666555554 5777788888777 44422 33333467778888888777665443333
Q ss_pred CCCCCCcEEEeecCc--CCcc-CCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCc--------------
Q 007553 89 GNLKDLYDLRLQGNK--LDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN-------------- 151 (599)
Q Consensus 89 ~~l~~L~~L~L~~n~--~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-------------- 151 (599)
..+++|++|++++|. +... ++..+..+++|++|++++|.....++..+..+++|++|+++.+.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 256677888877775 2211 11122345777888877773222255556667777777654431
Q ss_pred ------------cCC----CCcccccCCCCCCeeecccccccccC-ccccCCCCCCCEEEccCCcccc-cCchhccCCCC
Q 007553 152 ------------LTG----PIPSTLYHLNQLSTLYLAYNNLVGPL-PKEVGNLKNLDSLLLNRNNLTG-PIPSTIGFLNL 213 (599)
Q Consensus 152 ------------i~~----~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~ 213 (599)
+.. .++..+..+++|++|++++|.+.+.. ...+..+++|++|++++| +.. .++.....+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 111 12222234567777777777754322 222456777788877776 322 22222334677
Q ss_pred CCEEeCCC---------CcCcccCcccC-CCCCCCCEEEccCCcCCCCCCcccC-CCCCCCEEecc--C----cceeec-
Q 007553 214 LDELRLSH---------NRLDGPIPPTI-GNLTYLTSLDLSSNQLSGLLPREVG-NLKYLDSLSLD--R----NNLIGP- 275 (599)
Q Consensus 214 L~~L~l~~---------n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~- 275 (599)
|+.|++.+ +.+++.....+ ..+++|++|.+..|.+++..+..+. .+++|+.|+++ + +.+++.
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 77777733 33332211122 2367777777777777654444443 46777777777 2 333311
Q ss_pred ----CCcCccCCCCCCEEECCCCCCccCCCccCcC-CCCCCEEEcccCcCccCCCccc-cCCCCCCEEeCCCccccccCC
Q 007553 276 ----IPPTIGYLTNLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIP 349 (599)
Q Consensus 276 ----~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 349 (599)
++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++...
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 111244567777887766 454433333333 6777788887777765433333 456777888887777754333
Q ss_pred c-ccCCCCCCCEEECCCCcCc
Q 007553 350 S-QLGKIPNVSEVDVSKNNLS 369 (599)
Q Consensus 350 ~-~~~~~~~L~~L~ls~n~l~ 369 (599)
. ....+++|+.|++++|+++
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHhCCCCCEEeeeCCCCC
Confidence 2 3344677777888777764
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-23 Score=194.65 Aligned_cols=196 Identities=22% Similarity=0.220 Sum_probs=99.5
Q ss_pred CCCEEeccCCcccccCCccCCCCCCCcEEEeecCc-CCccCCccccCCCcCCEEeeec-ccccccCCccccCCCcccEEe
Q 007553 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK-LDGLIPSSIGNLTNLTHLDLSL-NQLSGRLPQEVGNLKNLVSLF 146 (599)
Q Consensus 69 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~ 146 (599)
+|++|++++|++++..+..|.++++|++|++++|+ +....+..|.++++|++|++++ |.++...+..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444443333344444444444444443 4333333444444444444444 444443334444444444444
Q ss_pred cccCccCCCCcccccCCCCCC---eeecccc-cccccCccccCCCCCCC-EEEccCCcccccCchhccCCCCCCEEeCCC
Q 007553 147 LDNNNLTGPIPSTLYHLNQLS---TLYLAYN-NLVGPLPKEVGNLKNLD-SLLLNRNNLTGPIPSTIGFLNLLDELRLSH 221 (599)
Q Consensus 147 l~~n~i~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 221 (599)
+++|.+++ +|. |..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|.++...+..+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 44444443 232 44444444 5555555 45444444455555555 6666555555222222333 5666666666
Q ss_pred Cc-CcccCcccCCCC-CCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCc
Q 007553 222 NR-LDGPIPPTIGNL-TYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270 (599)
Q Consensus 222 n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 270 (599)
|. +++..+..|..+ ++|++|++++|.+++ +|.. .+++|+.|++.++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 63 665555566666 777777777777764 3332 4566777777654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-23 Score=194.67 Aligned_cols=204 Identities=21% Similarity=0.226 Sum_probs=169.4
Q ss_pred cCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCc-ccccCCccCCCCCCCcEEEeec-CcCCccCCccc
Q 007553 35 RIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNI-LNGSIPLEFGNLKDLYDLRLQG-NKLDGLIPSSI 112 (599)
Q Consensus 35 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~~ 112 (599)
.+|. +. ++|++|++++|.+++..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |++....+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 5665 42 489999999999997777789999999999999997 8877777899999999999998 89987777888
Q ss_pred cCCCcCCEEeeecccccccCCccccCCCccc---EEecccC-ccCCCCcccccCCCCCC-eeecccccccccCccccCCC
Q 007553 113 GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLV---SLFLDNN-NLTGPIPSTLYHLNQLS-TLYLAYNNLVGPLPKEVGNL 187 (599)
Q Consensus 113 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~---~L~l~~n-~i~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l 187 (599)
.++++|++|++++|.+++ +|+ +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.+....+..+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 999999999999999986 565 88888888 9999999 88877667789999999 9999999988544444544
Q ss_pred CCCCEEEccCCc-ccccCchhccCC-CCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCc
Q 007553 188 KNLDSLLLNRNN-LTGPIPSTIGFL-NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQ 247 (599)
Q Consensus 188 ~~L~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 247 (599)
++|++|++++|. +++..+..+..+ +.|+.|++++|.+++. |.. .+++|+.|+++++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 899999999995 886667778888 9999999999999844 433 67889999988763
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-23 Score=205.47 Aligned_cols=226 Identities=22% Similarity=0.218 Sum_probs=182.5
Q ss_pred CCCCEEEcccCcCcccCCc---CCCCCCCCCEEeccCCcccccCCccC--CCCCCCcEEEeecCcCCccCC----ccccC
Q 007553 44 SRLKVLDLSYNRLTGTIPS---EIGSLRDLLELNLSYNILNGSIPLEF--GNLKDLYDLRLQGNKLDGLIP----SSIGN 114 (599)
Q Consensus 44 ~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~~ 114 (599)
..++.|.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|+|++|++.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578889988877532111 12235679999999999998888888 899999999999999987544 44567
Q ss_pred CCcCCEEeeecccccccCCccccCCCcccEEecccCccCCC--C--cccccCCCCCCeeecccccccccC--cc-ccCCC
Q 007553 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGP--I--PSTLYHLNQLSTLYLAYNNLVGPL--PK-EVGNL 187 (599)
Q Consensus 115 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~--~~-~l~~l 187 (599)
+++|++|++++|.+.+..+..+.++++|++|++++|++.+. + +..+..+++|++|++++|.++... +. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 89999999999999988888999999999999999997642 2 223468899999999999986321 11 24678
Q ss_pred CCCCEEEccCCcccccCchhccCC---CCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCE
Q 007553 188 KNLDSLLLNRNNLTGPIPSTIGFL---NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDS 264 (599)
Q Consensus 188 ~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 264 (599)
++|++|++++|.+.+..|..+..+ ++|+.|++++|.++ .+|..+. ++|++|++++|.+++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999998877777666 69999999999999 6676664 8999999999999964 43 678899999
Q ss_pred EeccCcceee
Q 007553 265 LSLDRNNLIG 274 (599)
Q Consensus 265 L~L~~n~l~~ 274 (599)
|+|++|.++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999998864
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-24 Score=220.78 Aligned_cols=250 Identities=21% Similarity=0.177 Sum_probs=115.5
Q ss_pred CCCeecCCcccCCCCCCCEEEcccCcCcccCC----cCCCCCC-CCCEEeccCCcccccCCccCCCC-----CCCcEEEe
Q 007553 30 RFLSGRIPSETGALSRLKVLDLSYNRLTGTIP----SEIGSLR-DLLELNLSYNILNGSIPLEFGNL-----KDLYDLRL 99 (599)
Q Consensus 30 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l-----~~L~~L~L 99 (599)
+.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..|..+ ++|++|+|
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 44444444444444445555555555543333 3344444 45555555555544434333332 44555555
Q ss_pred ecCcCCccCCccccCCCcCCEEeeecccccccCCccccCC-CcccEEecccCccCCCCccc----ccC-CCCCCeeeccc
Q 007553 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNL-KNLVSLFLDNNNLTGPIPST----LYH-LNQLSTLYLAY 173 (599)
Q Consensus 100 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~----l~~-l~~L~~L~l~~ 173 (599)
++|++.+..+..+... +..+ ++|++|++++|.+++..+.. +.. .++|++|+|++
T Consensus 88 s~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 88 SGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp CSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred cCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 5555443333322211 2222 44444444444444333222 222 13455555555
Q ss_pred ccccccC----ccccCCCC-CCCEEEccCCcccccCchh----ccCC-CCCCEEeCCCCcCccc----CcccCCC-CCCC
Q 007553 174 NNLVGPL----PKEVGNLK-NLDSLLLNRNNLTGPIPST----IGFL-NLLDELRLSHNRLDGP----IPPTIGN-LTYL 238 (599)
Q Consensus 174 n~~~~~~----~~~l~~l~-~L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L 238 (599)
|.+.+.. +..+..++ +|++|++++|.+++..+.. +... ++|+.|++++|.+.+. ++..+.. .++|
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 5444322 12223333 5555555555554433322 2222 3555555555555532 2223333 2366
Q ss_pred CEEEccCCcCCCCCC----cccCCCCCCCEEeccCcceee-------cCCcCccCCCCCCEEECCCCCCccC
Q 007553 239 TSLDLSSNQLSGLLP----REVGNLKYLDSLSLDRNNLIG-------PIPPTIGYLTNLTSLNLGYNQLNSS 299 (599)
Q Consensus 239 ~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~-------~~~~~~~~~~~L~~L~ls~n~~~~~ 299 (599)
++|++++|.+++..+ ..+..+++|+.|+|++|.+.+ .++..+..+++|+.|++++|.+.+.
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 666666666654322 223455666666666665322 1233455566677777777776554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-25 Score=225.41 Aligned_cols=245 Identities=20% Similarity=0.210 Sum_probs=131.5
Q ss_pred CCcccCCCCCCCEEEcccCcCccc----CCcCCCCCCCCCEEeccCCc---ccccCCccC-------CCCCCCcEEEeec
Q 007553 36 IPSETGALSRLKVLDLSYNRLTGT----IPSEIGSLRDLLELNLSYNI---LNGSIPLEF-------GNLKDLYDLRLQG 101 (599)
Q Consensus 36 ~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~---~~~~~p~~~-------~~l~~L~~L~L~~ 101 (599)
++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|. +++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 444555566666666666666543 22335556666666666642 233333332 4555566666666
Q ss_pred CcCCc----cCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCC---------CCCCe
Q 007553 102 NKLDG----LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL---------NQLST 168 (599)
Q Consensus 102 n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l---------~~L~~ 168 (599)
|.+.. .+|..+..+++|++|++++|.+....+..+.. .+..+ ++|++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCCE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCcE
Confidence 65554 23444555555555555555554322222211 11111 44555
Q ss_pred eeccccccc-ccCc---cccCCCCCCCEEEccCCcccc-----cCchhccCCCCCCEEeCCCCcCc----ccCcccCCCC
Q 007553 169 LYLAYNNLV-GPLP---KEVGNLKNLDSLLLNRNNLTG-----PIPSTIGFLNLLDELRLSHNRLD----GPIPPTIGNL 235 (599)
Q Consensus 169 L~l~~n~~~-~~~~---~~l~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l 235 (599)
|++++|.+. ..++ ..+..+++|++|++++|.+.. ..+..+..+++|+.|+|++|.++ ..++..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 555555443 1122 234445555555555555541 12224555566666666666654 3445556666
Q ss_pred CCCCEEEccCCcCCCC----CCccc--CCCCCCCEEeccCcceee----cCCcCc-cCCCCCCEEECCCCCCccCC
Q 007553 236 TYLTSLDLSSNQLSGL----LPREV--GNLKYLDSLSLDRNNLIG----PIPPTI-GYLTNLTSLNLGYNQLNSSI 300 (599)
Q Consensus 236 ~~L~~L~l~~n~l~~~----~~~~l--~~l~~L~~L~L~~n~l~~----~~~~~~-~~~~~L~~L~ls~n~~~~~~ 300 (599)
++|++|++++|.+++. ++..+ ..+++|+.|+|++|.+++ .+|..+ ..+++|++|++++|.+++..
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6666666666666543 34444 236777777777777765 355555 44677888888888777554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-23 Score=202.48 Aligned_cols=226 Identities=20% Similarity=0.183 Sum_probs=185.5
Q ss_pred CCCCEEeccCCcccccCCc---cCCCCCCCcEEEeecCcCCccCCccc--cCCCcCCEEeeecccccccCC----ccccC
Q 007553 68 RDLLELNLSYNILNGSIPL---EFGNLKDLYDLRLQGNKLDGLIPSSI--GNLTNLTHLDLSLNQLSGRLP----QEVGN 138 (599)
Q Consensus 68 ~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~l~~ 138 (599)
..++.|.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578899998877532111 12245779999999999998888888 899999999999999987555 34567
Q ss_pred CCcccEEecccCccCCCCcccccCCCCCCeeeccccccccc--C--ccccCCCCCCCEEEccCCcccccC--ch-hccCC
Q 007553 139 LKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP--L--PKEVGNLKNLDSLLLNRNNLTGPI--PS-TIGFL 211 (599)
Q Consensus 139 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~--~~-~~~~l 211 (599)
+++|++|++++|.+.+..+..|..+++|++|++++|++.+. + +..+..+++|++|++++|.++... +. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 99999999999999988888999999999999999997642 1 233478899999999999997321 11 35778
Q ss_pred CCCCEEeCCCCcCcccCcccCCCC---CCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCE
Q 007553 212 NLLDELRLSHNRLDGPIPPTIGNL---TYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTS 288 (599)
Q Consensus 212 ~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 288 (599)
+.|+.|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|+|++|.+++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999998878777776 79999999999999 5677664 7999999999999864 33 677899999
Q ss_pred EECCCCCCcc
Q 007553 289 LNLGYNQLNS 298 (599)
Q Consensus 289 L~ls~n~~~~ 298 (599)
|++++|.+++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999874
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-24 Score=218.86 Aligned_cols=197 Identities=19% Similarity=0.251 Sum_probs=92.7
Q ss_pred CCEEEcccCcCcccCCcCCCCC--CCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCcc-CCccccCCCcCCEEe
Q 007553 46 LKVLDLSYNRLTGTIPSEIGSL--RDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLD 122 (599)
Q Consensus 46 L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~ 122 (599)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455555555544 2233333 5555555555555544333 33455555555555555433 444455555555555
Q ss_pred eecccccccCCccccCCCcccEEecccC-ccCCC-CcccccCCCCCCeeecccc-ccccc-CccccCCCC-CCCEEEccC
Q 007553 123 LSLNQLSGRLPQEVGNLKNLVSLFLDNN-NLTGP-IPSTLYHLNQLSTLYLAYN-NLVGP-LPKEVGNLK-NLDSLLLNR 197 (599)
Q Consensus 123 l~~n~i~~~~~~~l~~l~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~ 197 (599)
+++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 5555555444444555555555555555 34321 3333444555555555555 44332 233344444 555555555
Q ss_pred C--ccc-ccCchhccCCCCCCEEeCCCCc-CcccCcccCCCCCCCCEEEccCC
Q 007553 198 N--NLT-GPIPSTIGFLNLLDELRLSHNR-LDGPIPPTIGNLTYLTSLDLSSN 246 (599)
Q Consensus 198 n--~~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 246 (599)
| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4 222 2233333444444444444444 33333334444444444444444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-24 Score=219.01 Aligned_cols=253 Identities=22% Similarity=0.217 Sum_probs=199.7
Q ss_pred CCcEEeeCCCCCCeecCCcccCCC--CCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccccc-CCccCCCCCCCcE
Q 007553 20 NLVTFRIWGTRFLSGRIPSETGAL--SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS-IPLEFGNLKDLYD 96 (599)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~ 96 (599)
.++++++++ +.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus 48 ~~~~l~l~~-~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTG-KNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTT-CBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeecccc-ccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 478999998 6665 3445566 8999999999999976665 56799999999999998865 7778899999999
Q ss_pred EEeecCcCCccCCccccCCCcCCEEeeecc-ccccc-CCccccCCCcccEEecccC-ccCCC-CcccccCCC-CCCeeec
Q 007553 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLN-QLSGR-LPQEVGNLKNLVSLFLDNN-NLTGP-IPSTLYHLN-QLSTLYL 171 (599)
Q Consensus 97 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~l~~n-~i~~~-~~~~l~~l~-~L~~L~l 171 (599)
|++++|.+.+..+..++.+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999998778888999999999999999 67753 5666889999999999999 88864 566788899 9999999
Q ss_pred cccc--cc-ccCccccCCCCCCCEEEccCCc-ccccCchhccCCCCCCEEeCCCCc-CcccCcccCCCCCCCCEEEccCC
Q 007553 172 AYNN--LV-GPLPKEVGNLKNLDSLLLNRNN-LTGPIPSTIGFLNLLDELRLSHNR-LDGPIPPTIGNLTYLTSLDLSSN 246 (599)
Q Consensus 172 ~~n~--~~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 246 (599)
++|. ++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9994 44 3456677889999999999999 776777788999999999999995 33222235777888888888887
Q ss_pred cCCCCCCcccCCC-CCCCEEeccCcceeecCCcCcc
Q 007553 247 QLSGLLPREVGNL-KYLDSLSLDRNNLIGPIPPTIG 281 (599)
Q Consensus 247 ~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~ 281 (599)
++.. .+..+ ..+..|++++|.+++..|..++
T Consensus 283 -i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 -VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp -SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred -cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 4322 22222 2245555666666666655543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-24 Score=220.72 Aligned_cols=196 Identities=22% Similarity=0.142 Sum_probs=132.0
Q ss_pred cccccccccccCCCCCcEEeeCCCCCCeecCC----cccCCCC-CCCEEEcccCcCcccCCcCCCCC-----CCCCEEec
Q 007553 6 NAAELSQLNFTCFPNLVTFRIWGTRFLSGRIP----SETGALS-RLKVLDLSYNRLTGTIPSEIGSL-----RDLLELNL 75 (599)
Q Consensus 6 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~L 75 (599)
++......-+...++|++|++++ |.+.+..+ +.+..++ +|++|+|++|.+++..+..+..+ ++|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred cchHHHHHHHhCCCCceEEEccC-CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 33433333345556699999999 88887666 6778888 99999999999997777766664 99999999
Q ss_pred cCCcccccCCccCC----CC-CCCcEEEeecCcCCccCCcccc----C-CCcCCEEeeecccccccCC----ccccCCC-
Q 007553 76 SYNILNGSIPLEFG----NL-KDLYDLRLQGNKLDGLIPSSIG----N-LTNLTHLDLSLNQLSGRLP----QEVGNLK- 140 (599)
Q Consensus 76 ~~n~~~~~~p~~~~----~l-~~L~~L~L~~n~~~~~~~~~~~----~-l~~L~~L~l~~n~i~~~~~----~~l~~l~- 140 (599)
++|.+++..+..+. .+ ++|++|+|++|++.+..+..+. . .++|++|++++|.+++..+ ..+..++
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence 99999976666444 44 8999999999999866554443 3 2588888888888875433 3334444
Q ss_pred cccEEecccCccCCCCccc----ccCC-CCCCeeeccccccccc----CccccCC-CCCCCEEEccCCcccc
Q 007553 141 NLVSLFLDNNNLTGPIPST----LYHL-NQLSTLYLAYNNLVGP----LPKEVGN-LKNLDSLLLNRNNLTG 202 (599)
Q Consensus 141 ~L~~L~l~~n~i~~~~~~~----l~~l-~~L~~L~l~~n~~~~~----~~~~l~~-l~~L~~L~l~~n~~~~ 202 (599)
+|++|++++|.+++..+.. +..+ ++|++|+|++|.+.+. ++..+.. .++|++|++++|.+++
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 7777777777776554432 3333 3666666666666542 2223322 2355555555555543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-25 Score=227.90 Aligned_cols=250 Identities=21% Similarity=0.230 Sum_probs=176.5
Q ss_pred cCCcCCCCCCCCCEEeccCCcccccCC----ccCCCCCCCcEEEeecCcCC---ccCCccccCCCcCCEEeeeccccccc
Q 007553 59 TIPSEIGSLRDLLELNLSYNILNGSIP----LEFGNLKDLYDLRLQGNKLD---GLIPSSIGNLTNLTHLDLSLNQLSGR 131 (599)
Q Consensus 59 ~~~~~~~~l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~l~~n~i~~~ 131 (599)
.++..+..+++|++|+|++|.++...+ ..|..+++|++|+|++|.+. +.+|..+. .
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~-----------------~ 85 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------L 85 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------H
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH-----------------H
Confidence 344555666777777777777765432 23556667777777665432 22333221 0
Q ss_pred CCccccCCCcccEEecccCccCC----CCcccccCCCCCCeeecccccccccCc----cccCCC---------CCCCEEE
Q 007553 132 LPQEVGNLKNLVSLFLDNNNLTG----PIPSTLYHLNQLSTLYLAYNNLVGPLP----KEVGNL---------KNLDSLL 194 (599)
Q Consensus 132 ~~~~l~~l~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l---------~~L~~L~ 194 (599)
+...+..+++|++|++++|.++. .++..+..+++|++|+|++|.+....+ ..+..+ ++|++|+
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 11223555666666666666655 245556666677777777776653322 223333 8999999
Q ss_pred ccCCccc-ccCc---hhccCCCCCCEEeCCCCcCcc-----cCcccCCCCCCCCEEEccCCcCC----CCCCcccCCCCC
Q 007553 195 LNRNNLT-GPIP---STIGFLNLLDELRLSHNRLDG-----PIPPTIGNLTYLTSLDLSSNQLS----GLLPREVGNLKY 261 (599)
Q Consensus 195 l~~n~~~-~~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~ 261 (599)
+++|.++ ...+ ..+..++.|+.|++++|.+.. ..+..+..+++|++|+|++|.++ +.+|..+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 9999997 3444 467788999999999999983 23447889999999999999996 457788899999
Q ss_pred CCEEeccCcceeec----CCcCc--cCCCCCCEEECCCCCCcc----CCCccC-cCCCCCCEEEcccCcCccCCC
Q 007553 262 LDSLSLDRNNLIGP----IPPTI--GYLTNLTSLNLGYNQLNS----SIPPEL-MNCSQLQNLAVNHNSLSGSIP 325 (599)
Q Consensus 262 L~~L~L~~n~l~~~----~~~~~--~~~~~L~~L~ls~n~~~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 325 (599)
|+.|+|++|.+++. ++..+ ..+++|++|+|++|.+++ .+|..+ ..+++|+.|++++|.+++..+
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999999999865 45555 348999999999999987 366666 568999999999999997653
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-22 Score=188.75 Aligned_cols=178 Identities=28% Similarity=0.282 Sum_probs=100.8
Q ss_pred CCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEe
Q 007553 20 NLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRL 99 (599)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 99 (599)
..+++++.+ +.++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 15 ~~~~l~~~~-~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQG-KSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTT-CCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCC-CCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 445566655 4444 4444432 45666666666666555555666666666666666666555555566666666666
Q ss_pred ecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccccccc
Q 007553 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP 179 (599)
Q Consensus 100 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 179 (599)
++|++.+..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|+|++|.+.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 66666555445555566666666666666544444455556666666666655544444455555555555555555554
Q ss_pred CccccCCCCCCCEEEccCCccc
Q 007553 180 LPKEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 180 ~~~~l~~l~~L~~L~l~~n~~~ 201 (599)
.+..+..+++|++|++++|.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHHhCCCCCCEEEeeCCcee
Confidence 4445555555555555555544
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-22 Score=188.86 Aligned_cols=179 Identities=28% Similarity=0.291 Sum_probs=127.1
Q ss_pred CCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEee
Q 007553 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDL 123 (599)
Q Consensus 44 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 123 (599)
...++++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++.+..+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35678888888887 5665553 57888888888888777777888888888888888888777777778888888888
Q ss_pred ecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCccccc
Q 007553 124 SLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGP 203 (599)
Q Consensus 124 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 203 (599)
++|.++...+..+.++++|++|++++|.+++..+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|.+.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88888766666677777777777777777765555566677777777777766655555566666666666666666554
Q ss_pred CchhccCCCCCCEEeCCCCcCc
Q 007553 204 IPSTIGFLNLLDELRLSHNRLD 225 (599)
Q Consensus 204 ~~~~~~~l~~L~~L~l~~n~l~ 225 (599)
.+..+..+++|+.|++++|.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHHhCCCCCCEEEeeCCcee
Confidence 4445555555555555555554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=196.62 Aligned_cols=191 Identities=26% Similarity=0.395 Sum_probs=86.7
Q ss_pred CCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEe
Q 007553 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLF 146 (599)
Q Consensus 67 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 146 (599)
+++|++|++++|.++. +| .+..+++|++|++++|++.+..+ +..+++|++|++++|.+.+. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 3444444444444432 22 23344444444444444432221 44444444444444444321 1244444444444
Q ss_pred cccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcc
Q 007553 147 LDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDG 226 (599)
Q Consensus 147 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 226 (599)
+++|.+++. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 444444432 1 14444444444444444443211 4444555555555554443221 4445555555555555543
Q ss_pred cCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCccee
Q 007553 227 PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273 (599)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 273 (599)
..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 322 455556666666666555432 2555566666666666554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=195.85 Aligned_cols=195 Identities=27% Similarity=0.401 Sum_probs=155.1
Q ss_pred cCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCC
Q 007553 40 TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLT 119 (599)
Q Consensus 40 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 119 (599)
..++++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3457788888888888873 44 57788888888888888875443 78888888888888888753 3688888888
Q ss_pred EEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCc
Q 007553 120 HLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN 199 (599)
Q Consensus 120 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 199 (599)
+|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 888888888754 3 37888888888888888876533 7788889999998888876433 8888899999999998
Q ss_pred ccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCC
Q 007553 200 LTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSG 250 (599)
Q Consensus 200 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 250 (599)
+++..+ +..+++|+.|++++|.+.+.. .+..+++|+.|++++|.+++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 875443 778889999999999998654 37889999999999999875
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=194.11 Aligned_cols=200 Identities=24% Similarity=0.211 Sum_probs=122.4
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCC-ccccCCCcCCE-Eeee
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIP-SSIGNLTNLTH-LDLS 124 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~-L~l~ 124 (599)
+++++++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| ..|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777777777 566544 3577788888888776555677778888888888887755443 45677777665 4455
Q ss_pred cccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccc-ccccccCccccCCCC-CCCEEEccCCcccc
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAY-NNLVGPLPKEVGNLK-NLDSLLLNRNNLTG 202 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~ 202 (599)
.|++....|+.|.++++|++|++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6777766677777777777777777777765554555555666666654 344443334444443 45666666666653
Q ss_pred cCchhccCCCCCCEEeCCC-CcCcccCcccCCCCCCCCEEEccCCcCCC
Q 007553 203 PIPSTIGFLNLLDELRLSH-NRLDGPIPPTIGNLTYLTSLDLSSNQLSG 250 (599)
Q Consensus 203 ~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 250 (599)
++........|+.|++.+ |.++...+..|..+++|++|++++|.++.
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 232233344566666653 33332222345556666666666666553
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-22 Score=194.33 Aligned_cols=114 Identities=22% Similarity=0.256 Sum_probs=95.2
Q ss_pred hhccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
++|...+.||+|+||+||+|++. +|+.||||+++....+ .++|.+|+++ +++||| .+++.+++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 35666778999999999999863 4788999999875543 5789999999 999999 56788999
Q ss_pred eecccccc--cccccCCC----------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPE----------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~----------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||||++| .++|+.++ ....++|.+++.||.|||+||+||| +++|+|||||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlK 155 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLA 155 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccC
Confidence 99999999 88997432 2356999999999999999999999 7899999997
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-22 Score=195.78 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=96.9
Q ss_pred hhccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
++|...+.||+|+||+||+|+++ +++.||||+++..... .++|.+|+++ +++||| .+.+.+++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 45666778999999999999874 4789999999765443 5789999998 999999 56788999
Q ss_pred eecccccc--cccccCCC------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPE------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||||++| .+|++.+. ...+++|.+++.||.|||+||+||| .++|||||||
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK 185 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLA 185 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeeccccc
Confidence 99999999 88887532 1246999999999999999999999 7899999997
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-22 Score=193.77 Aligned_cols=112 Identities=16% Similarity=0.198 Sum_probs=93.0
Q ss_pred ccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
+...+.||+|+||+||+|.+. +++.||||+++..... .++|.+|+.+ +++||| ...+.+++|
T Consensus 28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV 107 (308)
T 4gt4_A 28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMI 107 (308)
T ss_dssp EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred CeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEE
Confidence 333566999999999999973 4678999999754332 5689999999 999999 567889999
Q ss_pred ecccccc--cccccCCCC-------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPEN-------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~-------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||++| .+||+.+.. ...++|.++++||.|||+||+||| +.+|||||||
T Consensus 108 ~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK 172 (308)
T 4gt4_A 108 FSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLA 172 (308)
T ss_dssp EECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred EEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCcc
Confidence 9999999 899965321 246999999999999999999999 7899999997
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=187.70 Aligned_cols=240 Identities=18% Similarity=0.131 Sum_probs=159.3
Q ss_pred CEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccC-CccccCCCcccE-Eecc
Q 007553 71 LELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL-PQEVGNLKNLVS-LFLD 148 (599)
Q Consensus 71 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~-L~l~ 148 (599)
++++.++++++ .+|..+ .+++++|+|++|+++.+.+..|.++++|++|++++|.+.+.+ ++.|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888888888 567655 367899999999998666677889999999999999886544 456788888775 5566
Q ss_pred cCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccC-CcccccCchhccCCC-CCCEEeCCCCcCcc
Q 007553 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNR-NNLTGPIPSTIGFLN-LLDELRLSHNRLDG 226 (599)
Q Consensus 149 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~ 226 (599)
+|+++...|..|..+++|++|++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7888877777888888888888888888766655666666777777755 445544444455443 46777777777763
Q ss_pred cCcccCCCCCCCCEEEccC-CcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCc
Q 007553 227 PIPPTIGNLTYLTSLDLSS-NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305 (599)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 305 (599)
. +.......+|++|++.+ |.++...+..|..+++|+.|+|++|+++. +|.. .+.+|+.|.+.+++-...+| .+.
T Consensus 169 i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCC-CTT
T ss_pred C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCC-Cch
Confidence 3 33333445677777764 44443333456667777777777777663 3321 24455555554443333444 355
Q ss_pred CCCCCCEEEcccC
Q 007553 306 NCSQLQNLAVNHN 318 (599)
Q Consensus 306 ~l~~L~~L~l~~n 318 (599)
.+++|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 5666666666543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.3e-21 Score=175.89 Aligned_cols=150 Identities=29% Similarity=0.294 Sum_probs=70.6
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecc
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 126 (599)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++.+..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34444444444 233222 234555555555555443444455555555555555554433334445555555555555
Q ss_pred cccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCc
Q 007553 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN 199 (599)
Q Consensus 127 ~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 199 (599)
.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 5544434444455555555555555544333334444455555555554444333334444444444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=174.42 Aligned_cols=181 Identities=24% Similarity=0.224 Sum_probs=147.9
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeec
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 101 (599)
+.++..+ +.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 10 ~~v~c~~-~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYS-QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCS-SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecC-CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 5666665 5544 455444 46899999999999877667788999999999999999876666788999999999999
Q ss_pred CcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCc
Q 007553 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLP 181 (599)
Q Consensus 102 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 181 (599)
|++.+..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 99987766778899999999999999987777778899999999999999987766678889999999999996653
Q ss_pred cccCCCCCCCEEEccCCcccccCchhccCCCC
Q 007553 182 KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNL 213 (599)
Q Consensus 182 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 213 (599)
.+++|+.|+++.|.+++.+|.+++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4567888888888888888877765544
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-21 Score=188.44 Aligned_cols=110 Identities=22% Similarity=0.304 Sum_probs=92.8
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC-------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN-------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~ 550 (599)
+++...+.||+|+||+||+|++. ..||||.++... ...++|.+|+.+ +++||| ...+.+++|||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~ 113 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWC 113 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred HHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEEEcC
Confidence 34555677999999999999975 359999987543 224679999998 999999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .++|+... ..++|.+++.||.|||+||+||| +.+|||||||
T Consensus 114 ~gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlK 159 (307)
T 3omv_A 114 EGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMK 159 (307)
T ss_dssp SSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCC
T ss_pred CCCCHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccC
Confidence 999 88997543 35999999999999999999999 7899999997
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-21 Score=189.27 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=89.9
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CC----CCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SH----TDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~----~~~~~lv~e~ 549 (599)
++...+.||+|+||+||+|++ +|+.||||++.........+..|+.. +++||| .. ...+++||||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey 82 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDY 82 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecC
Confidence 455567899999999999998 58999999997654333344456655 889999 11 1357999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCC-----CccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRK-----YRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~-----~~~i~Hrdl~ 599 (599)
|++| .++|+.+ .++|.++++|+.|||+||+|||+.+ .++|+|||||
T Consensus 83 ~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlK 135 (303)
T 3hmm_A 83 HEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLK 135 (303)
T ss_dssp CTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCC
T ss_pred CCCCcHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCC
Confidence 9999 8899853 3999999999999999999999663 5799999997
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=192.38 Aligned_cols=187 Identities=28% Similarity=0.360 Sum_probs=132.5
Q ss_pred CCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeee
Q 007553 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124 (599)
Q Consensus 45 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 124 (599)
+|++|+|++|.+++ +|..+ +++|++|+|++|.++ .+| ..+++|++|+|++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777774 55544 367777777777777 455 346777777777777775 454 544 77777777
Q ss_pred cccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccC
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPI 204 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 204 (599)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+|++|.+.+ +|. |. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777775 444 56777778888777775 444 46677888888887776 455 54 77888888888777 44
Q ss_pred chhccCCCCC-------CEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCC
Q 007553 205 PSTIGFLNLL-------DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNL 259 (599)
Q Consensus 205 ~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 259 (599)
|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 54 433 56 88999999888 567777779999999999999988777776553
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=190.00 Aligned_cols=187 Identities=26% Similarity=0.328 Sum_probs=154.7
Q ss_pred CCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecc
Q 007553 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLD 148 (599)
Q Consensus 69 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 148 (599)
+|++|+|++|.+++ +|..+ .++|++|+|++|++. .+| ..+++|++|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999986 67655 378999999999998 456 457999999999999996 666 665 99999999
Q ss_pred cCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccC
Q 007553 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPI 228 (599)
Q Consensus 149 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 228 (599)
+|.+++ +|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.+++ +|. +. ++|+.|+|++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999987 565 67899999999999986 554 57899999999999986 666 55 89999999999998 56
Q ss_pred cccCCCCCCC-------CEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCC
Q 007553 229 PPTIGNLTYL-------TSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYL 283 (599)
Q Consensus 229 ~~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 283 (599)
|. +.. +| +.|++++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 65 544 77 99999999998 478878889999999999999998877766543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-19 Score=165.14 Aligned_cols=151 Identities=23% Similarity=0.302 Sum_probs=86.4
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecc
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 126 (599)
+.++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++.+..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45555555555 3444332 45666666666665555555556666666666666665555555666666666666666
Q ss_pred cccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcc
Q 007553 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200 (599)
Q Consensus 127 ~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 200 (599)
.++...+..|.++++|++|++++|.+++..+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 66544444455566666666666666555555555556666666666655555444555555566666655554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-19 Score=164.82 Aligned_cols=153 Identities=26% Similarity=0.308 Sum_probs=138.1
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeec
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 101 (599)
+.++..+ +.++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~-~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRG-KGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTT-SCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCC-CCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 6788887 6765 5676554 6899999999999987777899999999999999999988899999999999999999
Q ss_pred CcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccc
Q 007553 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG 178 (599)
Q Consensus 102 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 178 (599)
|++....+..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..|..+++|++|+|++|.+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99997766778999999999999999998889999999999999999999998877789999999999999998764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=176.33 Aligned_cols=126 Identities=30% Similarity=0.436 Sum_probs=56.3
Q ss_pred CCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEE
Q 007553 66 SLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSL 145 (599)
Q Consensus 66 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 145 (599)
.+++|++|++++|.+... + .+..+++|++|++++|++.+..+ +..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 344555555555554422 2 24445555555555555543322 44555555555555544431 124444555555
Q ss_pred ecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCccc
Q 007553 146 FLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 146 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 201 (599)
++++|.+++. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 5555544432 2334444444444444444332 23333444444444444433
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=175.40 Aligned_cols=172 Identities=30% Similarity=0.378 Sum_probs=114.1
Q ss_pred CCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 41 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|++.+. ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 456667777777777663 33 36667777777777777765433 66777777777777776642 23667777777
Q ss_pred EeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcc
Q 007553 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200 (599)
Q Consensus 121 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 200 (599)
|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 77777776643 3466777777777777777654 456667777777777777765433 66777777777777777
Q ss_pred cccCchhccCCCCCCEEeCCCCcCcc
Q 007553 201 TGPIPSTIGFLNLLDELRLSHNRLDG 226 (599)
Q Consensus 201 ~~~~~~~~~~l~~L~~L~l~~n~l~~ 226 (599)
++. + .+..+++|+.|++++|.+..
T Consensus 191 ~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 SDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-h-hhccCCCCCEEECcCCcccC
Confidence 642 3 36677777777777777664
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-20 Score=183.76 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=98.8
Q ss_pred cHHHHHHHhhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCch--hhHHHHHHhhc--cccc-cC-----
Q 007553 474 TFEEMIQATEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSET--EELAFLETSST--DFRH-YN----- 537 (599)
Q Consensus 474 ~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H-~n----- 537 (599)
...+++...++|...+.||+|+||+||+|.+. .++.||||++..... +.++|.+|+.+ +++| ||
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 34455555677888889999999999999863 235899999976543 25679999998 8866 88
Q ss_pred ---C-CCCCcceeecccccc--cccccCCC-------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 538 ---S-HTDNDDSSDEHLANN--EHFLSAPE-------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 538 ---~-~~~~~~lv~e~~~~G--~~~l~~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
. .++.+++|||||++| .+||+.+. ....++|.+++.||.|||+||+||| +.+||||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred EEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCcc
Confidence 2 345689999999999 88987432 1345899999999999999999999 789999999
Q ss_pred C
Q 007553 599 Y 599 (599)
Q Consensus 599 ~ 599 (599)
|
T Consensus 212 K 212 (353)
T 4ase_A 212 A 212 (353)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-19 Score=163.69 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=90.1
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCC-ccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeec
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIP-LEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 125 (599)
+++++++|.++ .+|..+ .+.+++|+|++|.+++..| ..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 45666666665 345433 2345666666666665433 3355666666666666666655555566666666666666
Q ss_pred ccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCccc
Q 007553 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 126 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 201 (599)
|.+++..++.+.++++|++|++++|.+++..|..|..+++|++|+|++|.+.+..|..|..+++|++|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6666555555666666666666666666555555666666666666666666555555666666666666666554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=189.02 Aligned_cols=173 Identities=25% Similarity=0.332 Sum_probs=101.0
Q ss_pred ccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCC
Q 007553 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94 (599)
Q Consensus 15 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 94 (599)
+..+++|+.|++.+ +.+.. +| .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+.+ +| .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~-n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANN-SDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTT-CCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred hhcCCCCCEEECcC-CCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 44566666666665 45442 22 35566666666666666654333 5566666666666666653 22 45666666
Q ss_pred cEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccc
Q 007553 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYN 174 (599)
Q Consensus 95 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 174 (599)
++|+|++|++.+. ..+..+++|+.|++++|.+.+. ..+..+++|++|+|++|.+++..| +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 6666666666542 3456666666666666666543 445666666666666666665433 556666666666666
Q ss_pred cccccCccccCCCCCCCEEEccCCcccc
Q 007553 175 NLVGPLPKEVGNLKNLDSLLLNRNNLTG 202 (599)
Q Consensus 175 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 202 (599)
.+.+. ..+..+++|+.|++++|.+.+
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 66543 245566666666666665543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-19 Score=178.76 Aligned_cols=176 Identities=26% Similarity=0.233 Sum_probs=108.7
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCC-CCCCCcEEEeecCcCCccCCccccCCCcCCEEeeec
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFG-NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 125 (599)
++++++++.++ .+|..+. +.+++|+|++|.+++..+..|. ++++|++|+|++|++.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56677776666 4554332 3466777777777666565665 667777777777777665556666677777777777
Q ss_pred ccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCcccc---CCCCCCCEEEccCCcccc
Q 007553 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV---GNLKNLDSLLLNRNNLTG 202 (599)
Q Consensus 126 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~~~~ 202 (599)
|.+....+..|.++++|++|+|++|.++...+..|..+++|++|+|++|.+....+..| ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77666555566666777777777776666556666666666666666666665433333 345666666666666654
Q ss_pred cCchhccCCCC--CCEEeCCCCcCc
Q 007553 203 PIPSTIGFLNL--LDELRLSHNRLD 225 (599)
Q Consensus 203 ~~~~~~~~l~~--L~~L~l~~n~l~ 225 (599)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444444444 255555555544
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=191.50 Aligned_cols=171 Identities=29% Similarity=0.376 Sum_probs=92.1
Q ss_pred CCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 41 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
..+++|+.|++++|.++. ++ .+..+++|++|+|++|.+++..| |..+++|+.|+|++|.+.+. | .+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCE
Confidence 445566666666666652 33 35556666666666666654333 55666666666666665532 2 4555666666
Q ss_pred EeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcc
Q 007553 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200 (599)
Q Consensus 121 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 200 (599)
|++++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 66666655532 2355555556666555555543 345555555555555555554333 45555555555555555
Q ss_pred cccCchhccCCCCCCEEeCCCCcCc
Q 007553 201 TGPIPSTIGFLNLLDELRLSHNRLD 225 (599)
Q Consensus 201 ~~~~~~~~~~l~~L~~L~l~~n~l~ 225 (599)
++. ..+..+++|+.|+|++|.+.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcCc
Confidence 432 23444555555555555444
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-19 Score=178.49 Aligned_cols=176 Identities=25% Similarity=0.203 Sum_probs=154.3
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCC-CCCCCCEEeccCCcccccCCccCCCCCCCcEEEee
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIG-SLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 100 (599)
+++++.+ +.++ .+|..+. +.+++|+|++|.+++..+..|. .+++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 21 ~~l~c~~-~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSK-QQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCS-SCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCC-CCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 6888887 7776 5776553 4689999999999988888887 99999999999999998888899999999999999
Q ss_pred cCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccc---cCCCCCCeeeccccccc
Q 007553 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTL---YHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 101 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l---~~l~~L~~L~l~~n~~~ 177 (599)
+|++....+..|..+++|++|++++|.+....+..|.++++|++|+|++|.++...+..| ..+++|+.|+|++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999998877889999999999999999998889999999999999999999997655555 56999999999999999
Q ss_pred ccCccccCCCCC--CCEEEccCCccc
Q 007553 178 GPLPKEVGNLKN--LDSLLLNRNNLT 201 (599)
Q Consensus 178 ~~~~~~l~~l~~--L~~L~l~~n~~~ 201 (599)
...+..+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 777677887877 489999999875
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=160.28 Aligned_cols=156 Identities=18% Similarity=0.226 Sum_probs=120.6
Q ss_pred CEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCC-cccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCC
Q 007553 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLP-REVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGY 293 (599)
Q Consensus 215 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~ 293 (599)
+.+++++|.++ .+|..+ .+.+++|++++|.+++..+ ..|..+++|+.|+|++|.+++..+..|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777766 345433 2356778888887776543 3467788888888888888777666788888888888888
Q ss_pred CCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCC
Q 007553 294 NQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373 (599)
Q Consensus 294 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 373 (599)
|.+++..+..|..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++.++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88887777778888888888888888887777888888888888888888887778888888888888888888887665
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-19 Score=179.38 Aligned_cols=113 Identities=15% Similarity=0.090 Sum_probs=90.0
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
++|...+.||+|+||+||+|+. .+|+.||||++.... .+...|.+|+.+ +++||| .+.+.+|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 3567778899999999999985 579999999997543 224679999998 999999 46778999999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||++| .++|..++ ...+++.+...|+.||+.||+||| ..+|+|||||
T Consensus 104 y~~gg~L~~~i~~~~-~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlK 152 (350)
T 4b9d_A 104 YCEGGDLFKRINAQK-GVLFQEDQILDWFVQICLALKHVH---DRKILHRDIK 152 (350)
T ss_dssp CCTTCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCC
T ss_pred CCCCCcHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCC
Confidence 99999 88887432 335788999999999999999999 7899999997
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=161.17 Aligned_cols=153 Identities=29% Similarity=0.298 Sum_probs=105.5
Q ss_pred CCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeec
Q 007553 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125 (599)
Q Consensus 46 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 125 (599)
.+.++++++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 356777777776 5554432 6777777777777766677777777777777777777655555567777777777777
Q ss_pred ccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccc
Q 007553 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTG 202 (599)
Q Consensus 126 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 202 (599)
|.++...+..+..+++|++|++++|+++ .+|..+..+++|++|+|++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 7777666666677777777777777776 456666667777777777777766555556667777777777776553
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-19 Score=179.13 Aligned_cols=109 Identities=19% Similarity=0.200 Sum_probs=93.6
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
.|.....||+|+||+||+|+. .+|+.||||++...... ...+.+|+.+ .++||| .+.+.+|+|||||+
T Consensus 75 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~ 154 (346)
T 4fih_A 75 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 154 (346)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred hcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCC
Confidence 466667799999999999996 47999999999754332 4568899998 999999 46788999999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++... .+++.+...++.||+.||+||| ..+|+|||||
T Consensus 155 gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlK 197 (346)
T 4fih_A 155 GGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIK 197 (346)
T ss_dssp TEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCC
Confidence 99 7788742 3899999999999999999999 7899999997
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-19 Score=175.28 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=92.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CC----------
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SH---------- 539 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~---------- 539 (599)
.+|...+.||+|+||+||+|+. .+|+.||||+++....+ ...+.+|+.+ +++||| ..
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 4688888999999999999995 47999999999754433 4678999998 999999 11
Q ss_pred --CCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 540 --TDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 540 --~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+++|||||++| .+++..+......++...+.|+.||+.||+||| +.+|+|||||
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlK 145 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLK 145 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCc
Confidence 11268999999999 888986544445677888999999999999999 7899999997
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=159.85 Aligned_cols=153 Identities=19% Similarity=0.270 Sum_probs=91.1
Q ss_pred CCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 41 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45666677777777666 444 4666666777777766554 2235666666666666666666555566666666666
Q ss_pred EeeecccccccCCccccCCCcccEEecccCc-cCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCc
Q 007553 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNN-LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNN 199 (599)
Q Consensus 121 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 199 (599)
|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+.+. + .+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 6666666665555566666666666666665 43 233 455566666666666665542 1 45555556666655555
Q ss_pred cc
Q 007553 200 LT 201 (599)
Q Consensus 200 ~~ 201 (599)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 43
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-19 Score=173.27 Aligned_cols=109 Identities=19% Similarity=0.201 Sum_probs=89.2
Q ss_pred ccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC----C--------CCCCcceeec
Q 007553 487 IKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN----S--------HTDNDDSSDE 548 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n----~--------~~~~~~lv~e 548 (599)
....||+|+||+||+|.. .+++.||||++.... .....|.+|+.+ +++||| . ..+.+++|||
T Consensus 30 ~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmE 109 (290)
T 3fpq_A 30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE 109 (290)
T ss_dssp EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEe
Confidence 345699999999999996 468999999996532 224679999998 999999 1 1345799999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||++| .+++... ..+++.+...|+.||++||+|||+ ..++|+|||||
T Consensus 110 y~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~ylH~-~~~~IiHRDlK 158 (290)
T 3fpq_A 110 LMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHT-RTPPIIHRDLK 158 (290)
T ss_dssp CCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT-SSSCCCCCCCC
T ss_pred CCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEecccC
Confidence 99999 8888742 358999999999999999999993 23469999997
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=159.56 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=135.5
Q ss_pred cccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCC
Q 007553 14 NFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKD 93 (599)
Q Consensus 14 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 93 (599)
..+.+++|++|++++ +.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..|..|.++++
T Consensus 39 ~~~~l~~L~~L~l~~-n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 39 TEAQMNSLTYITLAN-INVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp BHHHHHTCCEEEEES-SCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred ChhhcCCccEEeccC-CCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 346789999999998 8877 566 68999999999999998763 346899999999999999999878889999999
Q ss_pred CcEEEeecCcCCccCCccccCCCcCCEEeeeccc-ccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecc
Q 007553 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQ-LSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLA 172 (599)
Q Consensus 94 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 172 (599)
|++|++++|++.+..|..+..+++|++|++++|. +. .+| .+.++++|++|++++|.+++. + .+..+++|++|+++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEEC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEee
Confidence 9999999999998778899999999999999998 66 445 689999999999999999864 3 78899999999999
Q ss_pred cccccc
Q 007553 173 YNNLVG 178 (599)
Q Consensus 173 ~n~~~~ 178 (599)
+|++.+
T Consensus 190 ~N~i~~ 195 (197)
T 4ezg_A 190 SQTIGG 195 (197)
T ss_dssp BC----
T ss_pred CcccCC
Confidence 998763
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=157.20 Aligned_cols=156 Identities=25% Similarity=0.270 Sum_probs=124.2
Q ss_pred CCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCC
Q 007553 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGY 293 (599)
Q Consensus 214 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~ 293 (599)
-+.++++++.+. .+|..+ .++|++|++++|.+++..|..|..+++|+.|+|++|.+....+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345777777766 444433 27788888888888877777788888888888888888655556677888888888888
Q ss_pred CCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCC
Q 007553 294 NQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373 (599)
Q Consensus 294 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 373 (599)
|.+++..+..|..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8888766666788888899999988888 677778888899999999999987666778888999999999999887765
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-19 Score=180.49 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=94.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
..|.....||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ .++||| .+.+.+|+|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence 3466677899999999999996 46999999999765433 4568899998 999999 4678899999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++... .+++.+...|+.||+.||+||| ..+|||||||
T Consensus 231 ~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiK 274 (423)
T 4fie_A 231 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIK 274 (423)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CCCcHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHH---HCCeecccCC
Confidence 999 7788643 3899999999999999999999 7899999997
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-19 Score=173.26 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=95.8
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||+||+|+. .+|+.||||.+..... ....+.+|+.+ +++||| .+.+.+++||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 4688888999999999999995 5799999999975421 14568899998 999999 4677899999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.+...++.||+.||+||| ..+|+|||||
T Consensus 112 Ey~~gG~L~~~i~~~---~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlK 159 (311)
T 4aw0_A 112 SYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLK 159 (311)
T ss_dssp CCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred ecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCC
Confidence 999999 8888743 34899999999999999999999 7899999997
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-19 Score=174.22 Aligned_cols=107 Identities=15% Similarity=0.108 Sum_probs=91.3
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
+.|.....||+|+||+||+|+. .+|+.||||+++.... +.+|+.+ .++||| .+.+.+++|||||+
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~ 133 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLE 133 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccC
Confidence 4566677899999999999995 5699999999975432 2468887 999999 46777899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .++|+.. ..+++.+...++.||++||+||| ..+|||||||
T Consensus 134 gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlK 177 (336)
T 4g3f_A 134 GGSLGQLIKQM---GCLPEDRALYYLGQALEGLEYLH---TRRILHGDVK 177 (336)
T ss_dssp TCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCC
T ss_pred CCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCceecccC
Confidence 99 8888743 35999999999999999999999 7899999997
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-19 Score=167.41 Aligned_cols=111 Identities=18% Similarity=0.167 Sum_probs=90.1
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||+||+|.. .+|+.||||++...... ...+.+|+.+ +++||| .+.+..++||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 4677788899999999999985 57999999999754321 4568899998 999999 4677889999
Q ss_pred cccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||++++ .+++..+ ..+++.+...++.||+.||+||| +.+|+|||||
T Consensus 93 Ey~~g~L~~~l~~~---~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiK 139 (275)
T 3hyh_A 93 EYAGNELFDYIVQR---DKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLK 139 (275)
T ss_dssp ECCCEEHHHHHHHS---CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred eCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCC
Confidence 999655 8888743 35999999999999999999999 7899999997
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-19 Score=170.98 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=89.3
Q ss_pred hhccccceecccCCceEEEEEe----CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL----SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~----~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
++|...+.||+|+||+||+|+. ..++.||||.++.... +...+.+|+.+ +++||| .+.+.+++
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 4677788999999999999984 2478999999975432 23468889988 999999 46788999
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||||++| .+++... ..+++.+...++.||+.||+||| +.+|+|||||
T Consensus 104 vmEy~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlK 153 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKE---VMFTEEDVKFYLAELALALDHLH---SLGIIYRDLK 153 (304)
T ss_dssp EECCCTTCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCC
T ss_pred EEEcCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCC
Confidence 99999999 8888743 34899999999999999999999 7899999997
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-20 Score=199.28 Aligned_cols=203 Identities=23% Similarity=0.238 Sum_probs=125.0
Q ss_pred CCCCCcEEEeecCcCCccCCccccCCCcCCEEeeeccc-------------ccccCCccccCCCcccEEe-cccCccCCC
Q 007553 90 NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQ-------------LSGRLPQEVGNLKNLVSLF-LDNNNLTGP 155 (599)
Q Consensus 90 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~l~~l~~L~~L~-l~~n~i~~~ 155 (599)
.+++|+.|+|++|++. .+|..++++++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--- 422 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--- 422 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence 3445555555555543 344445555555555543332 3444556666777777776 554432
Q ss_pred CcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCC
Q 007553 156 IPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNL 235 (599)
Q Consensus 156 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 235 (599)
..|+.+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+
T Consensus 423 --------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred --------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 234445555555543211 236777777777765 454 677777777777777777 666677777
Q ss_pred CCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecC-CcCccCCCCCCEEECCCCCCccCCCcc---CcCCCCCC
Q 007553 236 TYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI-PPTIGYLTNLTSLNLGYNQLNSSIPPE---LMNCSQLQ 311 (599)
Q Consensus 236 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~ls~n~~~~~~~~~---~~~l~~L~ 311 (599)
++|+.|+|++|.+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+.|++++|.+++..|.. +..+++|+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 777777777777775 45 6777777777777777777665 677777777777777777777654422 23367777
Q ss_pred EEEc
Q 007553 312 NLAV 315 (599)
Q Consensus 312 ~L~l 315 (599)
.|++
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 7753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-20 Score=198.58 Aligned_cols=217 Identities=21% Similarity=0.177 Sum_probs=114.3
Q ss_pred cCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCE
Q 007553 113 GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDS 192 (599)
Q Consensus 113 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 192 (599)
..+++|+.|++++|.+. .+|..++.+++|++|++++|......+.. +..+...+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 45677777777777776 56777777777777777655311000000 0011122333444444555555
Q ss_pred EE-ccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcc
Q 007553 193 LL-LNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271 (599)
Q Consensus 193 L~-l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 271 (599)
|+ ++.|.+. .|..+.+++|.+....+ ..|+.|++++|.+++ +|. ++.+++|+.|+|++|.
T Consensus 414 L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred Ccchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 54 3333221 12222333333332111 125555555555554 343 5555666666666666
Q ss_pred eeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCC-CccccCCCCCCEEeCCCccccccCCc
Q 007553 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSI-PSEIGNLIHLRQLDLSHNFINGTIPS 350 (599)
Q Consensus 272 l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~ 350 (599)
++ .+|..+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..++.+++|+.|++++|.+++..|.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 55 455556666666666666666654 34 5566666666666666666554 66666666666666666666654332
Q ss_pred c---cCCCCCCCEEEC
Q 007553 351 Q---LGKIPNVSEVDV 363 (599)
Q Consensus 351 ~---~~~~~~L~~L~l 363 (599)
. +..+++|+.||+
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 1 223566666653
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-18 Score=171.51 Aligned_cols=222 Identities=14% Similarity=0.056 Sum_probs=121.0
Q ss_pred CCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccc----cccCccccCCCCCC
Q 007553 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL----VGPLPKEVGNLKNL 190 (599)
Q Consensus 115 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~l~~L 190 (599)
+++|+.|.+.+ .++.+.+.+|.++++|+++++.+|.+....+..|..+.++..+.+..+.. .......|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56666666655 55545555566666666666666655544444555555555444433211 11122234444444
Q ss_pred C-EEEccCCcc-cccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEecc
Q 007553 191 D-SLLLNRNNL-TGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 268 (599)
Q Consensus 191 ~-~L~l~~n~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 268 (599)
+ .+.+..... ............++..+.+.++-...........+++|+.+++++|.++...+..|..+++|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 4 333332211 00000011123445555554432111111111125677777777777766555667777777777777
Q ss_pred CcceeecCCcCccCCCCCC-EEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeC
Q 007553 269 RNNLIGPIPPTIGYLTNLT-SLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339 (599)
Q Consensus 269 ~n~l~~~~~~~~~~~~~L~-~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 339 (599)
+| +.......|.++.+|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.++...+.+|.++++|+.++.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 66 5555556677777777 777776 565556667777777887777777777666667777777777753
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-18 Score=164.45 Aligned_cols=168 Identities=24% Similarity=0.294 Sum_probs=90.5
Q ss_pred CCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEE
Q 007553 18 FPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDL 97 (599)
Q Consensus 18 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 97 (599)
+.++..+++.+ +.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|+|++|.+++..+ |.++++|++|
T Consensus 18 l~~l~~l~l~~-~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGK-QSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTC-SCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcC-CCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 34445555555 4444222 3455666666666666665 333 45556666666666666654333 5666666666
Q ss_pred EeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccccc
Q 007553 98 RLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 98 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 177 (599)
++++|++.+. |. +.. ++|++|++++|.+++. ..+.++++|++|++++|++++. + .+..+++|++|++++|.+.
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 6666666542 22 222 5566666666665532 2355556666666666655543 2 3555555555555555555
Q ss_pred ccCccccCCCCCCCEEEccCCccc
Q 007553 178 GPLPKEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 178 ~~~~~~l~~l~~L~~L~l~~n~~~ 201 (599)
+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 43 34455555555555555544
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-18 Score=171.83 Aligned_cols=102 Identities=17% Similarity=0.053 Sum_probs=48.0
Q ss_pred CCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCC-EEeccCcceeecCCcCccCCCCCCEE
Q 007553 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD-SLSLDRNNLIGPIPPTIGYLTNLTSL 289 (599)
Q Consensus 211 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L 289 (599)
+++|+.|+|++|.++......|.++++|+++++.+| +....+..|.++++|+ .+++.+ .+....+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 344555555554444333344455555555555444 3333344445555554 555544 3333333444445555555
Q ss_pred ECCCCCCccCCCccCcCCCCCCEEE
Q 007553 290 NLGYNQLNSSIPPELMNCSQLQNLA 314 (599)
Q Consensus 290 ~ls~n~~~~~~~~~~~~l~~L~~L~ 314 (599)
+++.|++....+.+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 5544444444444445555554443
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-18 Score=171.58 Aligned_cols=110 Identities=19% Similarity=0.256 Sum_probs=92.8
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------------CCCCCc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------------SHTDND 543 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------------~~~~~~ 543 (599)
+|...+.||+|+||+||+|.. .+|+.||||++..... ....+.+|+.+ .++||| .+.+.+
T Consensus 55 ~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~ 134 (398)
T 4b99_A 55 EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSV 134 (398)
T ss_dssp SEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCE
T ss_pred CeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEE
Confidence 477778899999999999995 5799999999965432 24578899998 999999 123567
Q ss_pred ceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|||||++| .+++..+ ..+++.+...++.||+.||+||| +.+|+|||||
T Consensus 135 ~ivmE~~~g~L~~~i~~~---~~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlK 185 (398)
T 4b99_A 135 YVVLDLMESDLHQIIHSS---QPLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLK 185 (398)
T ss_dssp EEEEECCSEEHHHHHTSS---SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred EEEEeCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcC
Confidence 9999999877 8888742 35999999999999999999999 8899999997
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-17 Score=155.95 Aligned_cols=160 Identities=24% Similarity=0.250 Sum_probs=137.6
Q ss_pred CCcccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccccc
Q 007553 4 NGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS 83 (599)
Q Consensus 4 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 83 (599)
.+.+.+++ .+..+++|++|++.+ +.+. .+| .+..+++|++|++++|.+++..+ +..+++|++|++++|++++.
T Consensus 28 ~~~i~~~~--~~~~l~~L~~L~l~~-n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 28 KQSVTDLV--SQKELSGVQNFNGDN-SNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp CSCTTSEE--CHHHHTTCSEEECTT-SCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC
T ss_pred CCCccccc--chhhcCcCcEEECcC-CCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc
Confidence 34566666 488999999999998 7776 455 68899999999999999996544 99999999999999999864
Q ss_pred CCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCC
Q 007553 84 IPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163 (599)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 163 (599)
|. +.. ++|++|++++|++++. ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++. ..+..+
T Consensus 101 -~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l 171 (263)
T 1xeu_A 101 -NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRL 171 (263)
T ss_dssp -TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTC
T ss_pred -Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccC
Confidence 43 333 9999999999999864 4699999999999999999965 3 689999999999999999976 678999
Q ss_pred CCCCeeeccccccccc
Q 007553 164 NQLSTLYLAYNNLVGP 179 (599)
Q Consensus 164 ~~L~~L~l~~n~~~~~ 179 (599)
++|+.|++++|.+...
T Consensus 172 ~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 172 KKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCCEEEEEEEEEECC
T ss_pred CCCCEEeCCCCcccCC
Confidence 9999999999998865
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-17 Score=164.43 Aligned_cols=130 Identities=26% Similarity=0.354 Sum_probs=110.8
Q ss_pred CccccHHHHHHHhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------
Q 007553 470 DGRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN-------- 537 (599)
Q Consensus 470 ~~~~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------- 537 (599)
...+++.++..++++|...+.||+|+||.||+|...+|+.||||++...... ...|.+|+.+ .++|||
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 96 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 96 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence 3468899999999999999999999999999999878999999999765432 3468899988 999999
Q ss_pred CCCCCcceeecccccc--cccccCCC-CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 SHTDNDDSSDEHLANN--EHFLSAPE-NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ~~~~~~~lv~e~~~~G--~~~l~~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+..++||||+++| .+++.... ....++|.++..|+.||++||+|||+.+.++|+||||+
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlk 161 (326)
T 3uim_A 97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVK 161 (326)
T ss_dssp CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCS
T ss_pred ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCc
Confidence 4667789999999999 88887643 33569999999999999999999997777799999996
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-17 Score=143.12 Aligned_cols=132 Identities=27% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCCCEEEcccCcCc-ccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEe
Q 007553 44 SRLKVLDLSYNRLT-GTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLD 122 (599)
Q Consensus 44 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 122 (599)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..|..+++|++|++++|++.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 45555555666666666666666543 4555666666666666666554555555566666666
Q ss_pred eecccccccC-CccccCCCcccEEecccCccCCCCc---ccccCCCCCCeeeccccccc
Q 007553 123 LSLNQLSGRL-PQEVGNLKNLVSLFLDNNNLTGPIP---STLYHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 123 l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~~n~~~ 177 (599)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666655431 1445555666666666665554333 24555555555555555544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-15 Score=153.40 Aligned_cols=267 Identities=10% Similarity=0.028 Sum_probs=194.9
Q ss_pred cCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCc
Q 007553 16 TCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95 (599)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 95 (599)
..+..++.+.+. +.++.--...|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.+ .++...+.+|.++++|+
T Consensus 110 ~~~~~l~~i~ip--~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILP--NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECC--TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EecCCccEEEEC--CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 345677777776 35554445566665 6888888766 665666677774 688888886 56656677888888888
Q ss_pred EEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccc
Q 007553 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNN 175 (599)
Q Consensus 96 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 175 (599)
.+++.+|++..+....|. ..+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNG 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCC
Confidence 888888888766556665 578888888744 66667778888888888888764 44444556776 67888888 445
Q ss_pred ccccCccccCCCCCCCEEEccCCccc-----ccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCC
Q 007553 176 LVGPLPKEVGNLKNLDSLLLNRNNLT-----GPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSG 250 (599)
Q Consensus 176 ~~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 250 (599)
+...-..+|..+++|+.+.+.+|.+. ......|..+++|+.+.+.. .+......+|.++++|+.+.+..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 55555678888888888888877654 34456788888999999884 466566678888999999999654 665
Q ss_pred CCCcccCCCCCCCEEeccCcceeecCCcCccCCC-CCCEEECCCCCC
Q 007553 251 LLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLT-NLTSLNLGYNQL 296 (599)
Q Consensus 251 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~ls~n~~ 296 (599)
.....|.++ +|+.+++.+|.+.......|.+++ .++.|.+..+.+
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 667788888 899999998887755556676664 678888776543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-15 Score=152.38 Aligned_cols=317 Identities=13% Similarity=0.038 Sum_probs=144.6
Q ss_pred cccccccccccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCC
Q 007553 6 NAAELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIP 85 (599)
Q Consensus 6 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 85 (599)
++++|...+|.+|++|+.+.+.. .++.--..+|.+|++|+.+++..+ ++..-..+|.++.+|+.+.+..+ +.....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 35566666677777777776653 344333345666666776666544 44344455666666666666544 222444
Q ss_pred ccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCC
Q 007553 86 LEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165 (599)
Q Consensus 86 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 165 (599)
.+|.++..++...... ........|.++++|+.+.+..+- ..+....|.++.+|+.+.+..+ ++......|.++..
T Consensus 134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 4555554333322222 122233456666666666665432 2244455666666666666544 33233344555555
Q ss_pred CCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccC
Q 007553 166 LSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS 245 (599)
Q Consensus 166 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 245 (599)
|+.+.+..+... +.+......+|+.+.+.... ...-...+..+..|+.+.+..+... .....|..+..++.+....
T Consensus 210 L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 210 LENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred cceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence 655555443221 11222233445555443321 1112223444445555554443221 2233444444444444443
Q ss_pred CcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCC
Q 007553 246 NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325 (599)
Q Consensus 246 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 325 (599)
..+. ...|..+.+|+.+.+..+ +.......|.++.+|+.+++.++ ++..-..+|.+|.+|+.+.+..+ ++....
T Consensus 286 ~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 286 VIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp SEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred eeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence 3221 123444444444444332 22222333444444444444322 33233334444444444444333 322223
Q ss_pred ccccCCCCCCEEeCC
Q 007553 326 SEIGNLIHLRQLDLS 340 (599)
Q Consensus 326 ~~~~~l~~L~~L~l~ 340 (599)
.+|.++++|+.+++.
T Consensus 360 ~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 360 NAFQGCINLKKVELP 374 (394)
T ss_dssp TTBTTCTTCCEEEEE
T ss_pred HHhhCCCCCCEEEEC
Confidence 344444444444443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.68 E-value=7e-18 Score=185.30 Aligned_cols=191 Identities=25% Similarity=0.199 Sum_probs=98.6
Q ss_pred CCCCEEEcccCcCcccCCcCCCCCCCCCE-----EeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcC
Q 007553 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLE-----LNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNL 118 (599)
Q Consensus 44 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~-----L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 118 (599)
+.++.|+|.+|.+.. .+..+....+|+. +++..|.+. ..|..|..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 456777777777663 3333322222222 223333333 44666777778888888888776 456666677788
Q ss_pred CEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCC
Q 007553 119 THLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRN 198 (599)
Q Consensus 119 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 198 (599)
++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|..+++|++|+|++|.+. .+|..|+.+++|++|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 88888888777 66777777888888888888777 56777777778888888877776 45666777778888888888
Q ss_pred cccccCchhccCCCC-CCEEeCCCCcCcccCcccCCCCCCCCEEEccCC
Q 007553 199 NLTGPIPSTIGFLNL-LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSN 246 (599)
Q Consensus 199 ~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 246 (599)
.+++.+|..+..+.. +..|++++|.+.+.+|. .|+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 777766665543321 22356677777666554 3344555544
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=144.31 Aligned_cols=128 Identities=29% Similarity=0.378 Sum_probs=62.3
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCc-cCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeec
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 125 (599)
++++++++.++ .+|..+. .+|++|++++|.+++..+. .|..+++|++|+|++|++++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555554 3443332 2455555555555543332 244555555555555555544444555555555555555
Q ss_pred ccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccccc
Q 007553 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 126 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 177 (599)
|.+++..+..+.++++|++|++++|++++..|..|..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5555444444444555555555555544444444444444444444444443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-18 Score=185.79 Aligned_cols=191 Identities=23% Similarity=0.207 Sum_probs=118.2
Q ss_pred CCCcEEeeCCCCCCeecCCcccCCCCCCCEEE-----cccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCC
Q 007553 19 PNLVTFRIWGTRFLSGRIPSETGALSRLKVLD-----LSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKD 93 (599)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~-----l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 93 (599)
+.++.|++.+ +.+.. .+..+.....|+.+. +..|.+. ..++.|..+++|++|+|++|.+. .+|..+.++++
T Consensus 173 ~~~~~l~L~~-n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFA-NGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeC-CCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 5678888877 66553 343333333333332 3334444 55778889999999999999998 67777778999
Q ss_pred CcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccc
Q 007553 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAY 173 (599)
Q Consensus 94 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 173 (599)
|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..+.+|++|++|+|++|.++ .+|..|..+++|++|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 999999999998 77888999999999999999999 67888999999999999999987 6788899999999999999
Q ss_pred ccccccCccccCCCCC-CCEEEccCCcccccCchhccCCCCCCEEeCCCC
Q 007553 174 NNLVGPLPKEVGNLKN-LDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHN 222 (599)
Q Consensus 174 n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 222 (599)
|.+.+.+|..+..+.. +..+++.+|.+++.+|.. |+.|+++.|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 9999888777654322 234678889888777654 455666665
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-15 Score=150.56 Aligned_cols=268 Identities=12% Similarity=0.103 Sum_probs=218.3
Q ss_pred CCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 41 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
..+..++.+.+..+ ++..-..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+.+..|.++++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34678888888764 565667788885 7999999887 666777889885 799999986 677677789999999999
Q ss_pred EeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcc
Q 007553 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200 (599)
Q Consensus 121 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 200 (599)
+++..|.++.+....|. ..+|+.+.+..+ +......+|.++++|+.+.+..+ +...-..+|.. .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 99999999977777777 589999999855 66666678999999999999875 55555567776 799999994 445
Q ss_pred cccCchhccCCCCCCEEeCCCCcCc-----ccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeec
Q 007553 201 TGPIPSTIGFLNLLDELRLSHNRLD-----GPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGP 275 (599)
Q Consensus 201 ~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 275 (599)
...-...|..+++|+.+++.++.+. ...+..|.++++|+.+.+.+ .+.......|.++++|+.+.|..+ +...
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 5556778999999999999988765 34567899999999999994 577667788999999999999665 6656
Q ss_pred CCcCccCCCCCCEEECCCCCCccCCCccCcCCC-CCCEEEcccCcCc
Q 007553 276 IPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCS-QLQNLAVNHNSLS 321 (599)
Q Consensus 276 ~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~ 321 (599)
....|.++ +|+.+++++|......+..|.+++ .++.|++..+.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 67789999 999999999988877777788875 7889999887653
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=144.64 Aligned_cols=109 Identities=28% Similarity=0.374 Sum_probs=45.2
Q ss_pred CCCEEEccCCcCCCCCCc-ccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEc
Q 007553 237 YLTSLDLSSNQLSGLLPR-EVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAV 315 (599)
Q Consensus 237 ~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l 315 (599)
+|++|++++|.+++..+. .+..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444444444444433222 2334444444444444444333344444444444444444444333333444444444444
Q ss_pred ccCcCccCCCccccCCCCCCEEeCCCcccc
Q 007553 316 NHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345 (599)
Q Consensus 316 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 345 (599)
++|.+++..|..+..+++|+.|++++|.++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 444444333444444444444444444443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=139.86 Aligned_cols=133 Identities=26% Similarity=0.160 Sum_probs=102.1
Q ss_pred CCCCCEEeccCCccc-ccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEE
Q 007553 67 LRDLLELNLSYNILN-GSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSL 145 (599)
Q Consensus 67 l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 145 (599)
.++|++|++++|.++ +.+|..|..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 477889999999887 56777788888899999998888765 678888888888888888887677777778888888
Q ss_pred ecccCccCCCC-cccccCCCCCCeeecccccccccCc---cccCCCCCCCEEEccCCccc
Q 007553 146 FLDNNNLTGPI-PSTLYHLNQLSTLYLAYNNLVGPLP---KEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 146 ~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~~~ 201 (599)
++++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888887542 2567777777777777777775543 35666777777777777654
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-17 Score=160.64 Aligned_cols=124 Identities=21% Similarity=0.301 Sum_probs=104.1
Q ss_pred ccHHHHHHHhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCC
Q 007553 473 ITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTD 541 (599)
Q Consensus 473 ~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~ 541 (599)
+.+.++..++++|.....||+|+||.||+|...+|+.||||++..... ....|.+|+.+ .++||| ...+
T Consensus 29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 108 (321)
T 2qkw_B 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN 108 (321)
T ss_dssp -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence 344455567788888899999999999999988899999999876543 35678899988 999999 4667
Q ss_pred Ccceeecccccc--cccccCCC-CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAPE-NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++| .+++.... ....++|.++..++.||++||+||| ..+|+||||+
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlk 166 (321)
T 2qkw_B 109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVK 166 (321)
T ss_dssp CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCC
Confidence 889999999999 88887543 2346899999999999999999999 7899999996
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=139.86 Aligned_cols=127 Identities=28% Similarity=0.239 Sum_probs=69.5
Q ss_pred CCCCEEEcccCcCc-ccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEe
Q 007553 44 SRLKVLDLSYNRLT-GTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLD 122 (599)
Q Consensus 44 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 122 (599)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..|..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666655 45555555566666666666655543 4455566666666666665554455555555566666
Q ss_pred eeccccccc-CCccccCCCcccEEecccCccCCCCc---ccccCCCCCCeeecc
Q 007553 123 LSLNQLSGR-LPQEVGNLKNLVSLFLDNNNLTGPIP---STLYHLNQLSTLYLA 172 (599)
Q Consensus 123 l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~ 172 (599)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 655555542 22445555555555555555554333 244455555555543
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-16 Score=156.90 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=102.5
Q ss_pred ccccHHHHHHHhhh----------ccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh-hHHHHHHhhc--ccccc
Q 007553 471 GRITFEEMIQATED----------FHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE-ELAFLETSST--DFRHY 536 (599)
Q Consensus 471 ~~~~~~~l~~at~~----------~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~ 536 (599)
+.++++++..+++. |.....||+|+||.||+|... +|+.||||++...... ...+.+|+.+ +++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 46889999988875 445568999999999999975 7999999999765433 4668899988 99999
Q ss_pred C--------CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 537 N--------SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 537 n--------~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| ..++..++||||+++| .+++... .++|.++..++.||++||+||| ..+|+||||+
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~----~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlk 168 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV----RLNEEQIATVCEAVLQALAYLH---AQGVIHRDIK 168 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 9 4567889999999999 7777642 4899999999999999999999 7899999996
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-16 Score=155.21 Aligned_cols=125 Identities=22% Similarity=0.285 Sum_probs=107.3
Q ss_pred ccccHHHHHHHhhhcccc------ceecccCCceEEEEEeCCCCEEEEEEecCCc-----hhhHHHHHHhhc--cccccC
Q 007553 471 GRITFEEMIQATEDFHIK------YCIGTGGYGSVYRAQLSSGRVVALKKLHRSE-----TEELAFLETSST--DFRHYN 537 (599)
Q Consensus 471 ~~~~~~~l~~at~~~~~~------~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~-----~~~~~f~~e~~~--~l~H~n 537 (599)
..+++.++..++.+|... +.||+|+||.||+|.. +++.||||++.... .....|.+|+.+ .++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 458899999999999887 8899999999999997 68999999986532 124678899988 999999
Q ss_pred --------CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 --------SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 --------~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+..++||||+++| .+++........++|..+..|+.||++||+||| ..+|+||||+
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlk 160 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIK 160 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCC
Confidence 5667889999999999 888875444456999999999999999999999 7899999986
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=169.90 Aligned_cols=112 Identities=16% Similarity=0.168 Sum_probs=96.3
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
++|...+.||+|+||.||+|.. .+|+.||+|.+..... +...+.+|+.+ .++||| .+.+.+++|||||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~ 236 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 236 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence 4677778899999999999995 4799999999976543 35668889998 999999 4678899999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++..+. ..+++.+...++.||+.||+||| ..+|+|||||
T Consensus 237 ~gg~L~~~i~~~~--~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlK 282 (573)
T 3uto_A 237 SGGELFEKVADEH--NKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLK 282 (573)
T ss_dssp CCCBHHHHHTCTT--SCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred CCCcHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCC
Confidence 999 78886533 34899999999999999999999 8899999997
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-16 Score=138.52 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=116.6
Q ss_pred CCCCCcEEeeCCCCCCe-ecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCc
Q 007553 17 CFPNLVTFRIWGTRFLS-GRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95 (599)
Q Consensus 17 ~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 95 (599)
..++|++|++++ +.+. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+.++++|+
T Consensus 15 ~~~~l~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDN-SRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTT-CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccC-CcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 458899999999 8887 78999889999999999999999865 6789999999999999999977888888899999
Q ss_pred EEEeecCcCCcc-CCccccCCCcCCEEeeecccccccCC---ccccCCCcccEEeccc
Q 007553 96 DLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLP---QEVGNLKNLVSLFLDN 149 (599)
Q Consensus 96 ~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~~ 149 (599)
+|++++|++.+. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999864 34789999999999999999997766 5789999999999864
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=138.87 Aligned_cols=127 Identities=32% Similarity=0.388 Sum_probs=71.9
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecc
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 126 (599)
++++++++.++ .+|..+ .++|++|+|++|.++ .+|..|.++++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666665 444433 245666666666665 44555666666666666666666555555666666666666666
Q ss_pred cccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccccc
Q 007553 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 127 ~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 177 (599)
.++...+..|.++++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 665555555555566666666666555444444555555555555555443
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=159.91 Aligned_cols=110 Identities=19% Similarity=0.144 Sum_probs=91.1
Q ss_pred HHhhhccccceecccCCceEEEEEe----CCCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC--------CCCCCcc
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQL----SSGRVVALKKLHRSETEELAFLETSST--DF-RHYN--------SHTDNDD 544 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~----~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n--------~~~~~~~ 544 (599)
...+.|...+.||+|+||+||+|+. ..++.||||++..... ...+.+|+.+ .+ +||| .+.+..+
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~-~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~ 96 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH-PIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV 96 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC-HHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC-HHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence 3345688888999999999999974 2467899999865433 3457788887 55 7999 4567889
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|||||++| .+++. .+++.+...++.||+.||+||| +.+|+|||||
T Consensus 97 lvmE~~~g~~L~~~~~------~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiK 144 (361)
T 4f9c_A 97 IAMPYLEHESFLDILN------SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVK 144 (361)
T ss_dssp EEEECCCCCCHHHHHT------TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEEeCCCcccHHHHHc------CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCC
Confidence 999999999 77774 2889999999999999999999 8899999997
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-16 Score=157.71 Aligned_cols=112 Identities=22% Similarity=0.282 Sum_probs=94.5
Q ss_pred hhccccceecccCCceEEEEEeC----CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS----SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
.+|...+.||+|+||.||+|+.. ++..||||++..... ...+|.+|+.+ +++||| ...+..++|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 124 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV 124 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence 45677788999999999999864 577899999976432 35679999998 999999 466788999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .++++.. ...++|.+++.|+.|||+||+||| ..+|+||||+
T Consensus 125 ~e~~~~~sL~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlk 174 (373)
T 2qol_A 125 TEYMENGSLDSFLRKH--DAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLA 174 (373)
T ss_dssp EECCTTCBHHHHHHTT--TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EeCCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCC
Confidence 9999999 8888753 235899999999999999999999 7899999996
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=137.08 Aligned_cols=128 Identities=25% Similarity=0.299 Sum_probs=115.8
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeec
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 101 (599)
+++++++ +.+. .+|..+. ++|++|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~-~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSN-KGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTT-SCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCC-CCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 6788887 7766 6776553 68999999999998 7888999999999999999999988888999999999999999
Q ss_pred CcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCC
Q 007553 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG 154 (599)
Q Consensus 102 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 154 (599)
|++++..+..|..+++|++|++++|.++...++.+..+++|+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99998888899999999999999999997777789999999999999998874
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-16 Score=148.99 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=97.4
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
++|...+.||+|+||.||+|...+++.||||++........++.+|+.+ +++||| ...+..++||||+++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 89 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEH 89 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCC
Confidence 4566678899999999999998888999999998765556779999998 999999 466778999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++.... ..+++.++..++.|+++||+||| ..+|+||||+
T Consensus 90 ~~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dik 133 (269)
T 4hcu_A 90 GCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLA 133 (269)
T ss_dssp CBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred CcHHHHHHhcC--cccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcc
Confidence 9 88887533 35899999999999999999999 7899999996
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-16 Score=166.13 Aligned_cols=111 Identities=22% Similarity=0.227 Sum_probs=90.6
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHH---hhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLET---SST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e---~~~--~l~H~n--------~~~~~~~ 544 (599)
++|...+.||+|+||.||+|+. .+|+.||||++...... .....+| +.+ .++||| .+.+.++
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 5788889999999999999996 46999999999653211 2223333 444 789999 4678899
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|||||+|| .++|... ..+++.+...++.||+.||+||| ..+|||||||
T Consensus 269 lVmEy~~GGdL~~~l~~~---~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLK 319 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQH---GVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLK 319 (689)
T ss_dssp EEECCCCSCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCS
T ss_pred EEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCc
Confidence 999999999 8888743 34899999999999999999999 8999999997
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-16 Score=163.41 Aligned_cols=115 Identities=19% Similarity=0.287 Sum_probs=99.2
Q ss_pred HhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeecccc
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLA 551 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~ 551 (599)
..++|...+.||+|+||.||+|...+++.||||+++.......+|.+|+.+ .++||| ...+..++|||||+
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~~ 265 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMA 265 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCCT
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeecC
Confidence 455677788899999999999999888999999998765556789999998 999999 45678899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .++++... ...+++.+++.|+.|||+||+||| ..+|+||||+
T Consensus 266 ~g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlk 311 (454)
T 1qcf_A 266 KGSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLR 311 (454)
T ss_dssp TCBHHHHHHSHH-HHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCS
T ss_pred CCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCC
Confidence 99 88887432 224789999999999999999999 7899999996
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=133.80 Aligned_cols=128 Identities=27% Similarity=0.282 Sum_probs=58.3
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecc
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 126 (599)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++.+..+..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44455555544 233222 244555555555554433344445555555555555554433333444455555555555
Q ss_pred cccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccccc
Q 007553 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 127 ~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 177 (599)
.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 444443334444444444444444444333333344444444444444433
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.6e-16 Score=162.09 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=98.3
Q ss_pred hhhccccceecccCCceEEEEEeCC-CCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSS-GRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~-g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
..+|...+.||+|+||.||+|.... ++.||||.+........+|.+|+.+ +++||| ...+..++|||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~ 298 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM 298 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEcc
Confidence 4567777889999999999999754 8899999998765556789999998 999999 4677889999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .++++... ...+++.+++.|+.|||+||+||| ..+|+||||+
T Consensus 299 ~~g~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlk 345 (495)
T 1opk_A 299 TYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLA 345 (495)
T ss_dssp TTCBHHHHHHHSC-TTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred CCCCHHHHHHhcC-cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 999 88887532 345899999999999999999999 7899999996
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-16 Score=163.23 Aligned_cols=121 Identities=19% Similarity=0.150 Sum_probs=100.5
Q ss_pred cHHHHHHHhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------C
Q 007553 474 TFEEMIQATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------S 538 (599)
Q Consensus 474 ~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~ 538 (599)
.+.++...+++|...+.||+|+||.||+|+.. +|+.||||++...... ...+.+|+.+ .++||| .
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 45566667789999999999999999999975 5789999999653221 2347788887 889999 4
Q ss_pred CCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 HTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 ~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+.+.+++|||||++| .++++... ..+++.+...++.||+.||+||| ..+|+|||||
T Consensus 145 ~~~~~~lV~Ey~~gg~L~~~l~~~~--~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLK 202 (437)
T 4aw2_A 145 DDNNLYLVMDYYVGGDLLTLLSKFE--DRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIK 202 (437)
T ss_dssp CSSEEEEEECCCTTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred eCCEEEEEEecCCCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccC
Confidence 667789999999999 88887532 34899999999999999999999 7899999997
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-16 Score=161.06 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=97.6
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeeccccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~ 552 (599)
.++|.....||+|+||.||+|...++..||||++........+|.+|+.+ +++||| ...+..++|||||++
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~~ 262 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSK 262 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTT
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhcC
Confidence 45677778899999999999999877889999998755456789999998 999999 345778999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .++++... ...+++.+++.|+.|||+||+||| ..+|+||||+
T Consensus 263 gsL~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlk 307 (452)
T 1fmk_A 263 GSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLR 307 (452)
T ss_dssp CBHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred CCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence 9 88887421 234899999999999999999999 7899999996
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-15 Score=131.84 Aligned_cols=133 Identities=27% Similarity=0.284 Sum_probs=115.0
Q ss_pred CcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEee
Q 007553 21 LVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100 (599)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 100 (599)
.+.+++.+ +.+. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 9 ~~~l~~~~-~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNS-KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCS-SCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecC-CCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 47788887 7765 456444 3789999999999997777778999999999999999997777778999999999999
Q ss_pred cCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCc
Q 007553 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP 157 (599)
Q Consensus 101 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 157 (599)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998777778999999999999999997777778899999999999999886544
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=151.35 Aligned_cols=112 Identities=19% Similarity=0.277 Sum_probs=95.9
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
++|...+.||+|+||.||+|.. .+|+.||+|++...... ...|.+|+.+ +++||| ...+..++||||+
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 89 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI 89 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence 4577778899999999999996 46899999998665433 5679999998 999999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.... ..++|.++..|+.||++||+||| ..+|+||||+
T Consensus 90 ~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlk 135 (310)
T 3s95_A 90 KGGTLRGIIKSMD--SQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLN 135 (310)
T ss_dssp TTCBHHHHHHHCC--TTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred CCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCC
Confidence 999 88887532 35899999999999999999999 7899999996
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=152.13 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=92.0
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CC----CCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SH----TDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~----~~~~~lv~e 548 (599)
++|...+.||+|+||.||+|+.. ++.||||++.........+..|+.+ +++||| .. ....++|||
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e 102 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITA 102 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEe
Confidence 45777788999999999999975 8999999997665555667778877 999999 11 233699999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCC-------CccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRK-------YRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~-------~~~i~Hrdl~ 599 (599)
|+++| .++++.+ .++|.++..|+.||++||+|||+.+ .++|+||||+
T Consensus 103 ~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlk 158 (322)
T 3soc_A 103 FHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIK 158 (322)
T ss_dssp CCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCS
T ss_pred cCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCC
Confidence 99999 8888753 3899999999999999999999431 2399999996
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-16 Score=157.93 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=95.6
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
.++|...+.||+|+||.||+|... +|+.||||.+...... ..+|.+|+.+ +++||| ...+..++|||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 192 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence 456777788999999999999975 7899999998754322 3568889988 999999 46678899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||++| .++++... ..+++.++..++.|||+||+||| ..+|+||||+
T Consensus 193 ~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlk 240 (377)
T 3cbl_A 193 LVQGGDFLTFLRTEG--ARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLA 240 (377)
T ss_dssp CCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred cCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccC
Confidence 99999 88887432 34899999999999999999999 7899999996
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=149.19 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=95.8
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC------CCCCCcceeecccccc-
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n------~~~~~~~lv~e~~~~G- 553 (599)
++|...+.||+|+||.||+|... ++.||||++... .....|.+|+.+ +++||| ...+..++||||+++|
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~~~~ 85 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE-SERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGS 85 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST-THHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCTTCB
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh-hHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCCCCC
Confidence 45666788999999999999984 889999999653 235678899988 999999 3446689999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++........+++.+.+.++.||++||+|||+....+|+||||+
T Consensus 86 L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlk 132 (307)
T 2eva_A 86 LYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLK 132 (307)
T ss_dssp HHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCS
T ss_pred HHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCC
Confidence 8888864433457899999999999999999996555899999996
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=148.48 Aligned_cols=113 Identities=18% Similarity=0.232 Sum_probs=95.0
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
.++|...+.||+|+||.||+|...++..||||++........++.+|+.+ .++||| ...+..++||||++
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 102 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA 102 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCT
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccC
Confidence 44677778899999999999999888899999998765556779999998 999999 46677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 103 ~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dik 147 (283)
T 3gen_A 103 NGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLA 147 (283)
T ss_dssp TCBHHHHHHCGG--GCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCS
T ss_pred CCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCc
Confidence 99 88887532 34899999999999999999999 7899999996
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-14 Score=142.00 Aligned_cols=312 Identities=10% Similarity=-0.008 Sum_probs=223.6
Q ss_pred cccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCc
Q 007553 38 SETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTN 117 (599)
Q Consensus 38 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 117 (599)
.+|.+|.+|+.+.+..+ ++..-..+|.++++|+.+++.++ ++.....+|.++.+|+.+.+..+ +.......|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 34677888888888644 66566677888888888888765 55455677888888888777654 33344556666654
Q ss_pred CCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccC
Q 007553 118 LTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNR 197 (599)
Q Consensus 118 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 197 (599)
++...... +......+|.++++|+.+.+.++. .......|.++++|+.+.+..+ +.......|..+..|+.+.+..
T Consensus 142 ~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 43333222 222345678899999999997653 3344567888999999998765 4444556788888888888776
Q ss_pred CcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCC
Q 007553 198 NNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIP 277 (599)
Q Consensus 198 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 277 (599)
+... +...+.....|+.+.+... +.......+..+..|+.+.+..+... .....|..+..++.+.+..+.+. .
T Consensus 218 ~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~ 290 (394)
T 4fs7_A 218 SLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---E 290 (394)
T ss_dssp TCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---T
T ss_pred CceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---c
Confidence 5432 2333445567888888653 33344457888999999999877543 55667888899998888766432 3
Q ss_pred cCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCC
Q 007553 278 PTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPN 357 (599)
Q Consensus 278 ~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 357 (599)
..|..+.+|+.+.+..+ +...-..+|.+|.+|+.+++.++ ++.....+|.++.+|+.+.+..+ ++..-..+|..+.+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 46778899999999765 55556678999999999999754 55455678899999999999877 66566778999999
Q ss_pred CCEEECCCC
Q 007553 358 VSEVDVSKN 366 (599)
Q Consensus 358 L~~L~ls~n 366 (599)
|+.+++..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 999998654
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=151.39 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=94.3
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCC-------
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTD------- 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~------- 541 (599)
.++|...+.||+|+||.||+|+.. +|+.||||++..... ....+.+|+.+ +++||| ...+
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 356777889999999999999975 799999999975432 35678999998 999999 1111
Q ss_pred --------------------------------------------------Ccceeecccccc--cccccCCCCCCCCChH
Q 007553 542 --------------------------------------------------NDDSSDEHLANN--EHFLSAPENYERVDFS 569 (599)
Q Consensus 542 --------------------------------------------------~~~lv~e~~~~G--~~~l~~~~~~~~l~~~ 569 (599)
..++||||+++| .+++..+......+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence 268999999999 8888865545567888
Q ss_pred HHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 570 PDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 570 ~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
....++.||++||+||| ..+|+||||+
T Consensus 165 ~~~~i~~qi~~aL~~LH---~~~ivH~Dlk 191 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLH---SKGLMHRDLK 191 (332)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred HHHHHHHHHHHHHHHHH---hCCeeecCCC
Confidence 89999999999999999 7899999996
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=150.89 Aligned_cols=111 Identities=23% Similarity=0.290 Sum_probs=93.0
Q ss_pred hccccceecccCCceEEEEEeC----CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS----SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
+|...+.||+|+||.||+|... .+..||||.+..... ....|.+|+.+ .++||| ..++..++||
T Consensus 50 ~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 129 (325)
T 3kul_A 50 RIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVT 129 (325)
T ss_dssp GEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEE
T ss_pred HeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEe
Confidence 4555688999999999999973 345699999976432 25679999998 999999 4667789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .++++... ..+++.++..|+.||++||+||| ..+|+||||+
T Consensus 130 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlk 178 (325)
T 3kul_A 130 EYMENGSLDTFLRTHD--GQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLA 178 (325)
T ss_dssp ECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred eCCCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCC
Confidence 999999 88887533 34899999999999999999999 7899999996
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=153.27 Aligned_cols=115 Identities=22% Similarity=0.247 Sum_probs=94.7
Q ss_pred hhhccccceecccCCceEEEEEe--------CCCCEEEEEEecCCchh--hHHHHHHhhc--cc-cccC--------CCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL--------SSGRVVALKKLHRSETE--ELAFLETSST--DF-RHYN--------SHT 540 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~--------~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l-~H~n--------~~~ 540 (599)
.++|...+.||+|+||.||+|.. .++..||||++...... ...+.+|+.+ .+ +||| ...
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 35677778899999999999985 23567999999765332 4678899988 77 8999 567
Q ss_pred CCcceeecccccc--cccccCCCC-------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN--EHFLSAPEN-------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G--~~~l~~~~~-------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+..++||||+++| .+++..... ...++|.+++.++.||++||+||| ..+|+||||+
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlk 230 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLA 230 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccc
Confidence 7899999999999 888875321 235899999999999999999999 7899999996
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=150.72 Aligned_cols=116 Identities=28% Similarity=0.332 Sum_probs=96.4
Q ss_pred HHhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
....+|.....||+|+||.||+|.. +|+.||||.+..... ...+|.+|+.+ +++||| ...+..++|
T Consensus 34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 3p86_A 34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV 112 (309)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence 3455677788899999999999987 589999999866432 24578899998 999999 566778999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcc--ccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRK--SYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~--i~Hrdl~ 599 (599)
|||+++| .+++........+++.+++.++.||++||+||| ..+ |+||||+
T Consensus 113 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dik 166 (309)
T 3p86_A 113 TEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLK 166 (309)
T ss_dssp EECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCC
T ss_pred EecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCC
Confidence 9999999 888875433335899999999999999999999 555 9999996
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.2e-16 Score=162.97 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=97.7
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeeccccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~ 552 (599)
.++|.....||+|+||.||+|...++..||||++........+|.+|+.+ +++||| ...+..++|||||++
T Consensus 266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~~~ 345 (535)
T 2h8h_A 266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSK 345 (535)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTT
T ss_pred hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehhcC
Confidence 45677778899999999999999877889999998755445789999998 999999 345778999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .++++... ...+++.+++.|+.|||+||+||| ..+|+||||+
T Consensus 346 gsL~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlk 390 (535)
T 2h8h_A 346 GSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLR 390 (535)
T ss_dssp EEHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred CcHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence 9 88887421 234899999999999999999999 7899999996
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=147.30 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=96.9
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
++|.....||+|+||.||+|...++..||||.+........++.+|+.+ +++||| ...+..++||||+++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 87 (268)
T 3sxs_A 8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISN 87 (268)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCC
Confidence 4566678899999999999998888899999998765556778999988 999999 466778999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 88 ~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dik 131 (268)
T 3sxs_A 88 GCLLNYLRSH--GKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLA 131 (268)
T ss_dssp CBHHHHHHHH--GGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCS
T ss_pred CcHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcC
Confidence 9 8888753 234899999999999999999999 7899999986
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=149.36 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=94.0
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC----------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN----------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n----------~~~~~~~lv~e 548 (599)
.|.....||+|+||.||+|... +|+.||||++...... ...+.+|+.+ +++||| ......++|||
T Consensus 10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e 89 (319)
T 4euu_A 10 LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIME 89 (319)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEE
T ss_pred CEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEe
Confidence 4666788999999999999964 5899999999754322 4668889988 999999 22346789999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++........+++.++..|+.||++||+||| ..+|+||||+
T Consensus 90 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlk 139 (319)
T 4euu_A 90 FCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIK 139 (319)
T ss_dssp CCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred CCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCC
Confidence 99999 888886544445899999999999999999999 7899999996
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-15 Score=147.56 Aligned_cols=111 Identities=20% Similarity=0.249 Sum_probs=90.1
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc----cccccC------------CCCCCcce
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST----DFRHYN------------SHTDNDDS 545 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~----~l~H~n------------~~~~~~~l 545 (599)
.++|...+.||+|+||.||+|.. +|+.||||++.... ...+..|.++ .++||| ......++
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~l 83 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD--EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL 83 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG--HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecccc--chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEE
Confidence 34677778899999999999998 69999999996543 3345555555 489999 12345789
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCC-----CccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRK-----YRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~-----~~~i~Hrdl~ 599 (599)
||||+++| .++++.. .++|.++..|+.|||+||+|||... ..+|+||||+
T Consensus 84 v~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlk 140 (301)
T 3q4u_A 84 ITHYHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLK 140 (301)
T ss_dssp EECCCTTCBHHHHHTTC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCC
T ss_pred ehhhccCCCHHHHHhhc----ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCC
Confidence 99999999 8888642 4899999999999999999999543 7899999996
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=148.30 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=92.9
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
++|...+.||+|+||.||+|...+|+.||||++...... ...+.+|+.+ +++||| ...+..++||||
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 100 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEF 100 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEEC
T ss_pred hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcC
Confidence 456667889999999999999888999999999754322 3578889988 999999 466778999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++ .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 101 ~~~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dik 146 (311)
T 3niz_A 101 MEKDLKKVLDENK--TGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLK 146 (311)
T ss_dssp CSEEHHHHHHTCT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred CCCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCc
Confidence 9988 77776533 34899999999999999999999 7899999996
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-15 Score=144.12 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=97.1
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
++|...+.||+|+||.||+|...+++.||||++........++.+|+.+ .++||| ...+..++||||+++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 87 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEH 87 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTT
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCC
Confidence 4566678899999999999998888899999998765556778999988 999999 466788999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 88 ~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~ 131 (267)
T 3t9t_A 88 GCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLA 131 (267)
T ss_dssp CBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCC
T ss_pred CcHHHHHhhCc--ccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCc
Confidence 9 88887532 34899999999999999999999 7899999986
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=148.81 Aligned_cols=112 Identities=26% Similarity=0.335 Sum_probs=93.6
Q ss_pred hhccccceecccCCceEEEEEe-----CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC----------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-----SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN----------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-----~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n----------~~~~~~~ 544 (599)
++|...+.||+|+||.||+|++ .+|+.||||++...... ...|.+|+.+ +++||| ......+
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 89 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 89 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence 4566678899999999999985 26889999999765443 4678899998 999999 1235588
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 90 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dik 141 (295)
T 3ugc_A 90 LIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLA 141 (295)
T ss_dssp EEEECCTTCBHHHHHHHCG--GGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred EEEEeCCCCCHHHHHHhcc--cccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCC
Confidence 999999999 88887532 34899999999999999999999 7899999996
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=148.92 Aligned_cols=112 Identities=16% Similarity=0.097 Sum_probs=95.7
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
++|...+.||+|+||.||+|... +|+.||+|.+.........+.+|+.+ .++||| ...+..++||||++
T Consensus 5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~ 84 (321)
T 1tki_A 5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFIS 84 (321)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCC
T ss_pred hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCC
Confidence 45666788999999999999964 68899999998765556678899998 999999 45678899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 85 g~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlk 129 (321)
T 1tki_A 85 GLDIFERINTSA--FELNEREIVSYVHQVCEALQFLH---SHNIGHFDIR 129 (321)
T ss_dssp CCBHHHHHTSSS--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCC
Confidence 99 78887532 35899999999999999999999 7899999996
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-15 Score=152.94 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=99.8
Q ss_pred ccHHHHHHHhhhccccceecccCCceEEEEEe------CCCCEEEEEEecCCchh--hHHHHHHhhc--cc-cccC----
Q 007553 473 ITFEEMIQATEDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSETE--ELAFLETSST--DF-RHYN---- 537 (599)
Q Consensus 473 ~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l-~H~n---- 537 (599)
+...++....++|.....||+|+||.||+|.. .+++.||||++...... ...|.+|+++ ++ +|||
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 44566666778898889999999999999973 34678999999764332 4578999998 77 8899
Q ss_pred -----CCCCCcceeecccccc--cccccCCCC------------------------------------------------
Q 007553 538 -----SHTDNDDSSDEHLANN--EHFLSAPEN------------------------------------------------ 562 (599)
Q Consensus 538 -----~~~~~~~lv~e~~~~G--~~~l~~~~~------------------------------------------------ 562 (599)
..+...++||||+++| .++++.+..
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK 171 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence 2345589999999999 888875321
Q ss_pred ---------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 563 ---------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 563 ---------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...++|.++..++.||++||+||| ..+|+||||+
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dik 220 (359)
T 3vhe_A 172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLA 220 (359)
T ss_dssp ------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 122899999999999999999999 7899999996
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-15 Score=142.79 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=93.2
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CC--CCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SH--TDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~--~~~~~lv~ 547 (599)
++|.....||+|+||.||+|... |+.||||.+.... .....|.+|+.+ .++||| .. .+..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 35666788999999999999984 8999999997643 224679999998 999999 23 36789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++.... ...+++.++..++.||++||+|||+ ..++|+||||+
T Consensus 89 e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~-~~~~i~H~dik 140 (271)
T 3kmu_A 89 HWMPYGSLYNVLHEGT-NFVVDQSQAVKFALDMARGMAFLHT-LEPLIPRHALN 140 (271)
T ss_dssp ECCTTCBHHHHHHSCS-SCCCCHHHHHHHHHHHHHHHHHHTT-SSSCCTTCCCS
T ss_pred cccCCCcHHHHHhhcc-cCCCCHHHHHHHHHHHHHHHHHHhc-CCCceecCCCc
Confidence 999999 88888532 3358999999999999999999992 23349999986
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-15 Score=151.25 Aligned_cols=114 Identities=23% Similarity=0.275 Sum_probs=94.3
Q ss_pred hhccccceecccCCceEEEEEeC------CCCEEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
++|...+.||+|+||.||+|.+. +++.||||++.... .....+.+|+.+ +++||| ...+..+
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 150 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF 150 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE
Confidence 45677788999999999999953 45689999996543 224578889988 899999 4677789
Q ss_pred eeecccccc--cccccCCC----CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPE----NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~----~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++.... ....++|.+++.++.||++||+||| ..+|+|||||
T Consensus 151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlk 208 (367)
T 3l9p_A 151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIA 208 (367)
T ss_dssp EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence 999999999 88887532 2245899999999999999999999 7899999997
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=133.95 Aligned_cols=131 Identities=24% Similarity=0.252 Sum_probs=73.2
Q ss_pred cCCCCCCCEEEcccCcCcccCCcCCCCC-CCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcC
Q 007553 40 TGALSRLKVLDLSYNRLTGTIPSEIGSL-RDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNL 118 (599)
Q Consensus 40 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 118 (599)
+.++++|++|++++|.++ .+|. +..+ ++|++|++++|.+++. ..|..+++|++|++++|++.+..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 345566666666666665 3343 3333 3666666666666643 355666666666666666664433334566666
Q ss_pred CEEeeecccccccCCc--cccCCCcccEEecccCccCCCCccc----ccCCCCCCeeecccccc
Q 007553 119 THLDLSLNQLSGRLPQ--EVGNLKNLVSLFLDNNNLTGPIPST----LYHLNQLSTLYLAYNNL 176 (599)
Q Consensus 119 ~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~----l~~l~~L~~L~l~~n~~ 176 (599)
++|++++|.+.. +|. .+..+++|++|++++|.++. +|.. +..+++|+.|+++.|..
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 666666666642 332 45556666666666666553 2332 45555555555555544
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-15 Score=155.85 Aligned_cols=112 Identities=19% Similarity=0.227 Sum_probs=94.6
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC---------CCCCCcceeeccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN---------SHTDNDDSSDEHL 550 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n---------~~~~~~~lv~e~~ 550 (599)
.++|...+.||+|+||.||+|... |+.||||.++... ....|.+|+.+ +++||| ...+..++|||||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~ 269 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 269 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT-TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECC
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch-HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEec
Confidence 456777788999999999999985 8899999997643 45679999998 999999 2334689999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .++++.+. ...+++.+++.|+.|||+||+||| ..+|+||||+
T Consensus 270 ~~g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlk 316 (450)
T 1k9a_A 270 AKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLA 316 (450)
T ss_dssp TTCBHHHHHHHHC-TTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred CCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence 999 88888532 334799999999999999999999 7899999996
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-16 Score=156.84 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=100.1
Q ss_pred ccHHHHHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------
Q 007553 473 ITFEEMIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN-------- 537 (599)
Q Consensus 473 ~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n-------- 537 (599)
+.+++.....++|...+.||+|+||.||+++. .+|+.||||++..... +...+.+|+.+ .++|||
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 130 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF 130 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence 34555556678899899999999999999997 4699999999965321 12347778877 889999
Q ss_pred CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+.+.+++|||||++| .+++.... ..+++..+..++.||+.||+||| ..+|+|||||
T Consensus 131 ~~~~~~~lVmE~~~gg~L~~~l~~~~--~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLK 189 (412)
T 2vd5_A 131 QDENYLYLVMEYYVGGDLLTLLSKFG--ERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIK 189 (412)
T ss_dssp ECSSEEEEEECCCCSCBHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred eeCCEEEEEEcCCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccC
Confidence 4667789999999999 88887432 34899999999999999999999 7899999996
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-15 Score=149.47 Aligned_cols=112 Identities=18% Similarity=0.162 Sum_probs=94.8
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
.++|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+|+.+ .++||| ...+..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 34677788899999999999996 579999999996542 224568889988 999999 4667789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+ ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 94 e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlk 141 (328)
T 3fe3_A 94 EYASGGEVFDYLVAH---GRMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLK 141 (328)
T ss_dssp CCCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred ECCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCC
Confidence 999999 7888643 24899999999999999999999 7899999996
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-15 Score=148.71 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=97.0
Q ss_pred HHhhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCC
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTD 541 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~ 541 (599)
...++|...+.||+|+||.||+|... +++.||||.+...... ...|.+|+.+ +++||| ...+
T Consensus 44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 123 (343)
T 1luf_A 44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK 123 (343)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC
Confidence 34567877889999999999999963 3478999999765322 4678999998 999999 4677
Q ss_pred Ccceeecccccc--cccccCCCC---------------------CCCCChHHHHHHHHHHHHHHhhhhCCCCcccccccc
Q 007553 542 NDDSSDEHLANN--EHFLSAPEN---------------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRL 598 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~~---------------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl 598 (599)
..++||||+++| .+++..... ...+++.+++.|+.||++||+||| ..+|+||||
T Consensus 124 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dl 200 (343)
T 1luf_A 124 PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDL 200 (343)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred ceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCC
Confidence 889999999999 888865321 246899999999999999999999 789999999
Q ss_pred C
Q 007553 599 Y 599 (599)
Q Consensus 599 ~ 599 (599)
+
T Consensus 201 k 201 (343)
T 1luf_A 201 A 201 (343)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-15 Score=144.86 Aligned_cols=111 Identities=25% Similarity=0.290 Sum_probs=94.1
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|...+.||+|+||.||+|...+|+.||||++...... ...+.+|+.+ +++||| ...+..++||||+
T Consensus 3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 82 (288)
T 1ob3_A 3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHL 82 (288)
T ss_dssp SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred cchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEec
Confidence 45666789999999999999878999999999654332 3678899998 999999 4567889999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++ .+++.... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 83 ~~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk 127 (288)
T 1ob3_A 83 DQDLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLK 127 (288)
T ss_dssp SEEHHHHHHTST--TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred CCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 988 77777533 34899999999999999999999 7899999996
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-15 Score=147.01 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=93.6
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+.|...+.||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ .++||| ..++..++||||+
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 99 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL 99 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECC
Confidence 4566778899999999999984 57999999998654332 4568889888 999999 4567889999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++... .+++.+...++.||+.||+||| ..+|+||||+
T Consensus 100 ~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlk 143 (297)
T 3fxz_A 100 AGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIK 143 (297)
T ss_dssp TTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCC
Confidence 999 8888753 3899999999999999999999 7799999996
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-15 Score=151.72 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=94.0
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC----------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN----------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n----------~~~~~~~lv~e 548 (599)
.|...+.||+|+||.||+|... +|+.||||++...... ...+.+|+++ +++||| ......++|||
T Consensus 10 ~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e 89 (396)
T 4eut_A 10 LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIME 89 (396)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEC
T ss_pred ceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEe
Confidence 4666788999999999999964 5899999999754322 4668889988 999999 12346799999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++........+++.++..++.||+.||+||| ..+|+||||+
T Consensus 90 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlk 139 (396)
T 4eut_A 90 FCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIK 139 (396)
T ss_dssp CCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred cCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcC
Confidence 99999 888886544445899999999999999999999 7899999996
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-15 Score=150.90 Aligned_cols=113 Identities=10% Similarity=0.020 Sum_probs=89.8
Q ss_pred hhhccccceecccCCceEEEEE------eCCCCEEEEEEecCCchhhHHHHHHhhc--cc---cccC--------CCCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQ------LSSGRVVALKKLHRSETEELAFLETSST--DF---RHYN--------SHTDN 542 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~------~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l---~H~n--------~~~~~ 542 (599)
.++|...+.||+|+||.||+|. ..+++.||||++.... ..++..|+.+ .+ .|+| ...+.
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~ 141 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN--PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNG 141 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC--HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSC
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC--hhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCC
Confidence 4567777889999999999994 4568899999997653 3345566655 34 4888 46778
Q ss_pred cceeecccccc--cccccCC--CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAP--ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~--~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++|||||++| .+++... .....++|.+++.|+.||++||+||| ..+|+|||||
T Consensus 142 ~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiK 199 (365)
T 3e7e_A 142 SVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIK 199 (365)
T ss_dssp EEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCS
T ss_pred cEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCC
Confidence 89999999999 8888642 12356999999999999999999999 7899999997
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-15 Score=155.39 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=97.4
Q ss_pred HHHHHHHhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CC
Q 007553 475 FEEMIQATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SH 539 (599)
Q Consensus 475 ~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~ 539 (599)
+.++....++|...+.||+|+||.||+|+.. +|+.||+|++..... ....+.+|+.+ .++||| .+
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~ 140 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 140 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence 3445556778988899999999999999964 589999999965321 12347788887 899999 46
Q ss_pred CCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 540 TDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 540 ~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+..++|||||++| .++++.. .+++.....++.||+.||+||| ..+|+|||||
T Consensus 141 ~~~~~lV~E~~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLK 195 (410)
T 3v8s_A 141 DRYLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVK 195 (410)
T ss_dssp SSEEEEEECCCTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CCEEEEEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCC
Confidence 67789999999999 7788743 3889999999999999999999 7899999996
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-15 Score=147.03 Aligned_cols=111 Identities=15% Similarity=0.061 Sum_probs=91.9
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
++|...+.||+|+||.||+|... +|+.||||.+...... ...+.+|+.+ .++||| ..++..++||||
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 86 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence 45777788999999999999864 7899999998654332 3567888888 899999 456778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 87 ~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlk 132 (323)
T 3tki_A 87 CSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIK 132 (323)
T ss_dssp CTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred CCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccccc
Confidence 9999 8888742 35899999999999999999999 7899999996
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-15 Score=145.28 Aligned_cols=114 Identities=20% Similarity=0.301 Sum_probs=96.9
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeeccccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~ 552 (599)
.++|.....||+|+||.||+|...++..||||.+.........|.+|+.+ .++||| ...+..++||||+++
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~ 91 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 91 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTT
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEecCCC
Confidence 34567778899999999999998888899999997765556778999988 999999 456678999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++.... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 92 ~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dik 136 (279)
T 1qpc_A 92 GSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLR 136 (279)
T ss_dssp CBHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred CCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 9 88887421 124899999999999999999999 7899999986
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-15 Score=150.32 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=95.1
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
+.|...+.||+|+||.||++... +|+.||||++.........+.+|+.+ .++||| ...+..++||||++
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~ 99 (361)
T 3uc3_A 20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYAS 99 (361)
T ss_dssp TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCC
Confidence 35677788999999999999964 78999999998765555678889988 999999 46677899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 100 ~~~L~~~l~~~---~~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlk 143 (361)
T 3uc3_A 100 GGELYERICNA---GRFSEDEARFFFQQLLSGVSYCH---SMQICHRDLK 143 (361)
T ss_dssp SCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCC
T ss_pred CCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 99 7777642 24899999999999999999999 7899999996
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.7e-15 Score=144.08 Aligned_cols=110 Identities=18% Similarity=0.168 Sum_probs=87.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---------------------------hHHHHHHhhc--c
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---------------------------ELAFLETSST--D 532 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---------------------------~~~f~~e~~~--~ 532 (599)
++|...+.||+|+||.||+|.. .+|+.||||.+...... ...+.+|+.+ +
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 92 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK 92 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence 4577778899999999999985 46899999998654211 2458889988 9
Q ss_pred ccccC----------CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 533 FRHYN----------SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 533 l~H~n----------~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||| ...+..++||||+++| .+++.. ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlk 164 (298)
T 2zv2_A 93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL----KPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIK 164 (298)
T ss_dssp CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 99999 1256689999999999 665543 35899999999999999999999 7799999996
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-15 Score=151.02 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=87.3
Q ss_pred cccceecccCCceEEEEEe-CCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 486 HIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 486 ~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
...+.||+|+||.||+|.. .+|+.||||++..... ...+|.+|+.+ +++||| ...+..++||||+++|
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 3356799999999999985 5699999999987543 35678999998 999999 4567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 172 ~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlk 214 (373)
T 2x4f_A 172 ELFDRIIDES--YNLTELDTILFMKQICEGIRHMH---QMYILHLDLK 214 (373)
T ss_dssp EEHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred cHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCC
Confidence 77776432 34899999999999999999999 7899999996
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-15 Score=150.17 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=94.6
Q ss_pred HHhhhccccceecccCCceEEEEEeC-CC-----CEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCC
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQLS-SG-----RVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHT 540 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~~-~g-----~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~ 540 (599)
...++|...+.||+|+||.||+|... .+ ..||||.+..... ....+.+|+.+ .+ +||| ...
T Consensus 43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~ 122 (333)
T 2i1m_A 43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG 122 (333)
T ss_dssp CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC
Confidence 34567777889999999999999863 22 4799999976532 24678899988 88 8999 567
Q ss_pred CCcceeecccccc--cccccCCC-----------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN--EHFLSAPE-----------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G--~~~l~~~~-----------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+..++||||+++| .+++.... ....+++.++..++.||++||+||| ..+|+||||+
T Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlk 191 (333)
T 2i1m_A 123 GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVA 191 (333)
T ss_dssp SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcc
Confidence 7899999999999 88886421 1235799999999999999999999 7799999996
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-15 Score=144.32 Aligned_cols=108 Identities=7% Similarity=-0.085 Sum_probs=89.8
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
.|.....||+|+||.||+|... +|+.||||.+...... ...|.+|+.. +++||| ...+..++|||
T Consensus 32 ~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 111 (286)
T 3uqc_A 32 RYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAE 111 (286)
T ss_dssp TEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEE
Confidence 4666778999999999999964 5899999999765322 3678888887 999999 35677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ....+..+|+.||++||+||| ..+|+|||||
T Consensus 112 ~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH---~~givH~Dik 156 (286)
T 3uqc_A 112 WIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAH---RAGVALSIDH 156 (286)
T ss_dssp CCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCS
T ss_pred ecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHH---HCCCccCCCC
Confidence 99999 8888631 355678999999999999999 7899999996
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=130.99 Aligned_cols=135 Identities=20% Similarity=0.171 Sum_probs=114.9
Q ss_pred ccccCCCCCcEEeeCCCCCCeecCCcccCCC-CCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCC
Q 007553 13 LNFTCFPNLVTFRIWGTRFLSGRIPSETGAL-SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91 (599)
Q Consensus 13 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 91 (599)
..+..+++|++|++++ |.++ .+|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+
T Consensus 13 ~~~~~~~~L~~L~l~~-n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRG-YKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTT-SCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred HhcCCcCCceEEEeeC-CCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 3477899999999999 8887 4554 5454 4999999999999965 579999999999999999997655666899
Q ss_pred CCCcEEEeecCcCCccCCc--cccCCCcCCEEeeecccccccCCc----cccCCCcccEEecccCccCC
Q 007553 92 KDLYDLRLQGNKLDGLIPS--SIGNLTNLTHLDLSLNQLSGRLPQ----EVGNLKNLVSLFLDNNNLTG 154 (599)
Q Consensus 92 ~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~----~l~~l~~L~~L~l~~n~i~~ 154 (599)
++|++|++++|++.. +|. .+..+++|++|++++|.+.. .|. .+..+++|+.|+++.|.+..
T Consensus 88 ~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 88 PDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999999974 454 78999999999999999984 455 48899999999999997653
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.3e-15 Score=148.38 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=95.3
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+.|...+.||+|+||.||+|.. .+|+.||+|.+..... ....+.+|+.+ .++||| ...+..++||||+
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~ 130 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 130 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcC
Confidence 4577778899999999999986 4689999999976543 34578899998 999999 4667789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 131 ~gg~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlk 176 (387)
T 1kob_A 131 SGGELFDRIAAE--DYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIK 176 (387)
T ss_dssp CCCBHHHHTTCT--TCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred CCCcHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccc
Confidence 999 7888743 235899999999999999999999 7899999996
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-15 Score=148.23 Aligned_cols=111 Identities=20% Similarity=0.171 Sum_probs=93.2
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||+|... +|+.||+|.+.... .+...+.+|+.+ .++||| ...+..++||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 56777889999999999999964 69999999996532 124567888887 999999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 85 E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlk 132 (337)
T 1o6l_A 85 EYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIK 132 (337)
T ss_dssp ECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred eCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCC
Confidence 999999 7777642 24899999999999999999999 7899999996
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-15 Score=147.61 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=93.8
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch-------hhHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET-------EELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~-------~~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
+.|.....||+|+||.||+|... +|+.||||.+..... ....+.+|+.+ .++||| ...+..+
T Consensus 12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 91 (361)
T 2yab_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVV 91 (361)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEE
Confidence 44666788999999999999964 689999999975432 13578899998 999999 4567789
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++..+ ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 92 lv~e~~~gg~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlk 142 (361)
T 2yab_A 92 LILELVSGGELFDFLAQK---ESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLK 142 (361)
T ss_dssp EEEECCCSCBHHHHHTTC---SCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred EEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 999999999 8888742 35899999999999999999999 7899999996
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=141.79 Aligned_cols=112 Identities=20% Similarity=0.249 Sum_probs=93.2
Q ss_pred hhccccceecccCCceEEEEEeC----CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC-------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS----SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN-------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||+|... .+..||||++...... ...|.+|+.+ +++||| ...+..++||
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~lv~ 94 (281)
T 1mp8_A 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIM 94 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEE
T ss_pred HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEccCccEEEE
Confidence 45667788999999999999863 2457999998764322 4678899988 999999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+. ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 95 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk 143 (281)
T 1mp8_A 95 ELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIA 143 (281)
T ss_dssp ECCTTEEHHHHHHHTT--TTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred ecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccc
Confidence 999999 88887532 34899999999999999999999 7899999996
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-15 Score=144.37 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=92.3
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
+|...+.||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ +++||| ..++..++||||
T Consensus 3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 82 (292)
T 3o0g_A 3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF 82 (292)
T ss_dssp SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred CceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEec
Confidence 466677899999999999996 46899999999754322 4678889988 999999 466778999999
Q ss_pred cccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++ .+++... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 83 ~~~~l~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dik 128 (292)
T 3o0g_A 83 CDQDLKKYFDSC--NGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLK 128 (292)
T ss_dssp CSEEHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CCCCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 9988 6666542 234899999999999999999999 7799999996
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-17 Score=149.10 Aligned_cols=151 Identities=27% Similarity=0.310 Sum_probs=83.2
Q ss_pred CCCCEEEcccCcCcccCCc------CCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCc
Q 007553 44 SRLKVLDLSYNRLTGTIPS------EIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTN 117 (599)
Q Consensus 44 ~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 117 (599)
..++.++++.+.+++.+|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|++. .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444444443 45555666666666666553 44 5555666666666666655 34445555566
Q ss_pred CCEEeeecccccccCCccccCCCcccEEecccCccCCCCc-ccccCCCCCCeeecccccccccCcc----------ccCC
Q 007553 118 LTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP-STLYHLNQLSTLYLAYNNLVGPLPK----------EVGN 186 (599)
Q Consensus 118 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~----------~l~~ 186 (599)
|++|++++|.+++ +| .+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .+..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 6666666666654 22 35556666666666666654221 3455666666666666666544332 2566
Q ss_pred CCCCCEEEccCCccc
Q 007553 187 LKNLDSLLLNRNNLT 201 (599)
Q Consensus 187 l~~L~~L~l~~n~~~ 201 (599)
+++|+.|+ ++.++
T Consensus 173 l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 173 LPNLKKLD--GMPVD 185 (198)
T ss_dssp CSSCSEEC--CGGGT
T ss_pred CCCcEEEC--CcccC
Confidence 67777665 44443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-17 Score=148.40 Aligned_cols=150 Identities=25% Similarity=0.280 Sum_probs=93.9
Q ss_pred ccCCCCCcEEeeCCCCCCeecCCc------ccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccC
Q 007553 15 FTCFPNLVTFRIWGTRFLSGRIPS------ETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEF 88 (599)
Q Consensus 15 l~~l~~L~~L~l~~~~~~~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 88 (599)
+...+.++.+++.. +.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~-~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEK-VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSE-EECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchhe-eEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 34455556666665 555555554 56666777777777777664 45 5666677777777777666 455555
Q ss_pred CCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCC-ccccCCCcccEEecccCccCCCCcc---------
Q 007553 89 GNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP-QEVGNLKNLVSLFLDNNNLTGPIPS--------- 158 (599)
Q Consensus 89 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~--------- 158 (599)
..+++|++|++++|++.+. | .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.+|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred hcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 5566777777777776642 3 46666777777777776664322 3566677777777777766554433
Q ss_pred -cccCCCCCCeee
Q 007553 159 -TLYHLNQLSTLY 170 (599)
Q Consensus 159 -~l~~l~~L~~L~ 170 (599)
.+..+++|+.|+
T Consensus 168 ~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCSEEC
T ss_pred HHHHhCCCcEEEC
Confidence 255666666665
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=147.47 Aligned_cols=110 Identities=26% Similarity=0.335 Sum_probs=89.8
Q ss_pred ccccceecccCCceEEEEEeC--CC--CEEEEEEecCCc--hhhHHHHHHhhc--cccccC---------CCCCCcceee
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS--SG--RVVALKKLHRSE--TEELAFLETSST--DFRHYN---------SHTDNDDSSD 547 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~--~g--~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n---------~~~~~~~lv~ 547 (599)
|...+.||+|+||.||+|... ++ ..||||.+.... ....+|.+|+.+ +++||| ...+..++||
T Consensus 91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~ 170 (373)
T 3c1x_A 91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL 170 (373)
T ss_dssp EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEE
T ss_pred eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEE
Confidence 444567999999999999863 22 468999986543 235679999998 999999 2345678999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .++++... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 171 e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlk 219 (373)
T 3c1x_A 171 PYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLA 219 (373)
T ss_dssp ECCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred ECCCCCCHHHHHhhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccc
Confidence 999999 88887533 34899999999999999999999 7899999996
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-15 Score=145.99 Aligned_cols=115 Identities=22% Similarity=0.269 Sum_probs=98.5
Q ss_pred HhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
...+|.....||+|+||.||+|... ++..||||.+.........+.+|+.+ .++||| ...+..++||||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 90 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 90 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEc
Confidence 3556777788999999999999975 48899999998766666789999998 999999 466778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++... ....+++.++..++.||++||+||| ..+|+||||+
T Consensus 91 ~~~~~L~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dik 138 (288)
T 3kfa_A 91 MTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLA 138 (288)
T ss_dssp CTTEEHHHHHHHC-CTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCS
T ss_pred CCCCcHHHHHHhc-ccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCC
Confidence 9999 8888753 2345899999999999999999999 7899999986
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.6e-15 Score=143.42 Aligned_cols=112 Identities=17% Similarity=0.289 Sum_probs=93.3
Q ss_pred hhccccceecccCCceEEEEEeC-CC-------CEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SG-------RVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDND 543 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g-------~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~ 543 (599)
++|...+.||+|+||.||+|... ++ ..||+|.+...... ...|.+|+.+ .++||| ...+..
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN 87 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence 45666788999999999999853 23 47999999765433 5678899988 999999 467788
Q ss_pred ceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+++| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 88 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlk 140 (289)
T 4fvq_A 88 ILVQEFVKFGSLDTYLKKNK--NCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVC 140 (289)
T ss_dssp EEEEECCTTCBHHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred EEEEECCCCCCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcC
Confidence 9999999999 88887532 34899999999999999999999 7899999996
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-14 Score=147.16 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=94.8
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
.++|...+.||+|+||.||+|.. .+|+.||||.+.... .....+.+|+.+ .++||| ...+..++||
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 107 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 107 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 45688888999999999999986 468999999997543 224568889998 899999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 108 e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlk 155 (362)
T 2bdw_A 108 DLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCH---SNGIVHRNLK 155 (362)
T ss_dssp CCCCSCBHHHHHTTC---SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCS
T ss_pred ecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCc
Confidence 999999 7777642 35899999999999999999999 7799999996
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-14 Score=146.33 Aligned_cols=116 Identities=20% Similarity=0.272 Sum_probs=93.5
Q ss_pred HhhhccccceecccCCceEEEEEe------CCCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCC
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTD 541 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~ 541 (599)
..++|...+.||+|+||.||+|.. .+++.||||.+..... ....+.+|+.+ ++ +||| ...+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 456788888999999999999985 2456899999975432 24678899988 88 9999 5677
Q ss_pred Ccceeecccccc--cccccCCCC--------------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAPEN--------------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~~--------------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++| .+++..... ...++|.++..++.||++||+||| ..+|+||||+
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 899999999999 888875432 134899999999999999999999 7899999996
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=144.93 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=94.0
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch-------hhHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET-------EELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~-------~~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
+.|.....||+|+||.||+|... +|+.||||.+..... ....+.+|+.+ .++||| ...+..+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 45777788999999999999964 689999999865432 14568899988 999999 4567789
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++..+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 91 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlk 141 (326)
T 2y0a_A 91 LILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLK 141 (326)
T ss_dssp EEEECCCSCBHHHHHTTS---SCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EEEEcCCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCC
Confidence 999999999 8888742 35899999999999999999999 7899999996
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=140.25 Aligned_cols=112 Identities=24% Similarity=0.248 Sum_probs=88.8
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchh-----hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE-----ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~-----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||+|... |+.||||.+...... ...+.+|+.+ .++||| ...+..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 45667788999999999999974 899999998654322 3568889888 899999 5677789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+ .+++.+...++.|+++||+|||+....+|+||||+
T Consensus 86 e~~~~~~L~~~~~~~----~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dik 135 (271)
T 3dtc_A 86 EFARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK 135 (271)
T ss_dssp ECCTTEEHHHHHTSS----CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCS
T ss_pred EcCCCCCHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCc
Confidence 999999 7777632 48999999999999999999995544559999986
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-14 Score=144.26 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=93.5
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
.++|...+.||+|+||.||+++. .+|+.||+|.+..... ....+.+|+.+ .++||| .+.+..++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 35677788999999999999996 4699999999965421 23457778877 899999 456778999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++... ..+++.....++.||+.||+||| ..+|+||||+
T Consensus 85 ~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlk 133 (318)
T 1fot_A 85 MDYIEGGELFSLLRKS---QRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLK 133 (318)
T ss_dssp ECCCCSCBHHHHHHHT---SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCC
T ss_pred EeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 9999999 8888742 34899999999999999999999 7899999996
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.4e-15 Score=157.93 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=89.6
Q ss_pred eecccCCceEEEEEeC---CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCcceeecccccc--
Q 007553 490 CIGTGGYGSVYRAQLS---SGRVVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN-- 553 (599)
Q Consensus 490 ~lg~g~~g~v~~~~~~---~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G-- 553 (599)
.||+|+||.||+|.+. ++..||||+++.... ...+|.+|+.+ +++||| ...+..++|||||++|
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E~~~~g~L 422 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPL 422 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEECCTTCBH
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEEeCCCCcH
Confidence 6999999999999863 466899999976432 35789999998 999999 3456789999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++..+ ...++|.++..|+.|||+||+||| ..+|+||||+
T Consensus 423 ~~~l~~~--~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlk 463 (613)
T 2ozo_A 423 HKFLVGK--REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLA 463 (613)
T ss_dssp HHHHTTC--TTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred HHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCC
Confidence 8888753 345899999999999999999999 7899999996
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=147.50 Aligned_cols=114 Identities=22% Similarity=0.228 Sum_probs=93.8
Q ss_pred hhccccceecccCCceEEEEEe--------CCCCEEEEEEecCCchh--hHHHHHHhhc--cc-cccC--------CCCC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL--------SSGRVVALKKLHRSETE--ELAFLETSST--DF-RHYN--------SHTD 541 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~--------~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l-~H~n--------~~~~ 541 (599)
++|...+.||+|+||.||+|.. ..++.||||++...... ...+.+|+++ .+ +||| ...+
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~ 148 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG 148 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCC
Confidence 4566778899999999999985 22367999999765332 4678899988 77 9999 5677
Q ss_pred Ccceeecccccc--cccccCCCC-------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAPEN-------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~~-------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++| .+++..... ...++|.++..|+.||++||+||| ..+|+||||+
T Consensus 149 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlk 218 (382)
T 3tt0_A 149 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLA 218 (382)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCC
Confidence 889999999999 888875321 245899999999999999999999 7899999996
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=150.03 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=92.7
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---------hhHHHHHHhhc--cccccC-------CCCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---------EELAFLETSST--DFRHYN-------SHTDN 542 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---------~~~~f~~e~~~--~l~H~n-------~~~~~ 542 (599)
.++|...+.||+|+||.||+|.. .+++.||||.+..... ....+.+|+.+ +++||| ...+.
T Consensus 134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~ 213 (419)
T 3i6u_A 134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 213 (419)
T ss_dssp HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESSE
T ss_pred hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecCc
Confidence 45688888999999999999985 4689999999865321 12347889988 999999 34566
Q ss_pred cceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++|||||++| .+++... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 214 ~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlk 266 (419)
T 3i6u_A 214 YYIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLK 266 (419)
T ss_dssp EEEEEECCTTCBGGGGTSSS---CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred eEEEEEcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 89999999999 7777742 35899999999999999999999 7799999996
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-14 Score=145.14 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=86.5
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------------~~~~~~~lv~ 547 (599)
++|.....||+|+||.||+|+. +|+.||||++............|+.. .++||| ......++||
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~ 91 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVM 91 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEE
T ss_pred HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEE
Confidence 4577778899999999999987 68999999997544332222333333 689999 1122458999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCC------CccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRK------YRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~------~~~i~Hrdl~ 599 (599)
||+++| .+++..+. .+|.++..|+.||++||+|||+.+ .++|+||||+
T Consensus 92 e~~~~g~L~~~l~~~~----~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dik 147 (336)
T 3g2f_A 92 EYYPNGSLXKYLSLHT----SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLN 147 (336)
T ss_dssp CCCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCS
T ss_pred ecCCCCcHHHHHhhcc----cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccc
Confidence 999999 88887533 589999999999999999999542 2399999996
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=143.33 Aligned_cols=115 Identities=22% Similarity=0.256 Sum_probs=95.0
Q ss_pred hhhccccceecccCCceEEEEEe------CCCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTDN 542 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~~ 542 (599)
.++|...+.||+|+||.||+|.. .+++.||||++..... ....+.+|+.+ ++ +||| ...+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 34677778899999999999984 3567999999976542 24678899988 88 9999 56778
Q ss_pred cceeecccccc--cccccCCCC---------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPEN---------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~---------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+++| .+++..... ...++|.++..++.||++||+||| ..+|+||||+
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk 172 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLA 172 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCc
Confidence 89999999999 888875321 225899999999999999999999 7899999996
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=143.71 Aligned_cols=115 Identities=21% Similarity=0.199 Sum_probs=94.6
Q ss_pred hhhccccceecccCCceEEEEEe------CCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDND 543 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~ 543 (599)
.++|...+.||+|+||.||+|.. .+++.||||.+..... ....+.+|+.+ .++||| ...+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 45677778899999999999985 2458899999976432 24678899988 999999 467788
Q ss_pred ceeecccccc--cccccCCCC---------------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPEN---------------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~---------------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+++| .+++..... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dik 177 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLA 177 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccc
Confidence 9999999999 888875321 234899999999999999999999 7899999996
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=143.97 Aligned_cols=115 Identities=21% Similarity=0.252 Sum_probs=93.1
Q ss_pred hhhccccceecccCCceEEEEEe--------CCCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL--------SSGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHT 540 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~--------~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~ 540 (599)
.++|...+.||+|+||.||+|.. .+++.||||++..... ....+.+|+.+ .+ +||| ...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 35677778899999999999986 2467899999976532 24678889988 77 9999 466
Q ss_pred CCcceeecccccc--cccccCCCC-------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN--EHFLSAPEN-------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G--~~~l~~~~~-------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+..++||||+++| .+++..... ...++|.++..++.||++||+||| ..+|+||||+
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlk 184 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLA 184 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCc
Confidence 7889999999999 888875331 234899999999999999999999 7899999996
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.4e-15 Score=143.43 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=92.4
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
.|...+.||+|+||.||+|.. .+++.||+|.+..... ....|.+|+.+ .++||| ...+..++|||
T Consensus 12 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 91 (294)
T 4eqm_A 12 RYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVME 91 (294)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEE
T ss_pred cEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEe
Confidence 466677899999999999985 4689999999854322 14578889988 999999 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... .++++.++..++.||++||+||| ..+|+||||+
T Consensus 92 ~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlk 138 (294)
T 4eqm_A 92 YIEGPTLSEYIESH---GPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIK 138 (294)
T ss_dssp CCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred CCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 99999 8888743 35899999999999999999999 7899999996
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-15 Score=147.29 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=93.2
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
..|...+.||+|+||.||+|.. .+|+.||||++..... ....+.+|+.+ +++||| ...+..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4577778899999999999985 5799999999975422 13578899998 999999 4567889999
Q ss_pred cccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||++++ .+++.... ..++|.++..++.||++||+||| ..+|+||||+
T Consensus 134 e~~~g~l~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlk 181 (348)
T 1u5q_A 134 EYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVK 181 (348)
T ss_dssp ECCSEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCS
T ss_pred ecCCCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCC
Confidence 999977 77775422 35899999999999999999999 7799999996
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=147.32 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=93.6
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|.....||+|+||.||++... +|+.||+|.+..... ....+.+|+.+ .++||| ...+..++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 45777888999999999999964 689999999865321 14568889988 999999 4667789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++.. ...+++.++..++.||+.||+||| ..+|+||||+
T Consensus 95 e~~~gg~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlk 142 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQ---NVHFKEETVKLFICELVMALDYLQ---NQRIIHRDMK 142 (384)
T ss_dssp CCCTTEEHHHHHHT---TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred ecCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCc
Confidence 999999 777774 234899999999999999999999 7899999996
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.9e-15 Score=142.81 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=95.1
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHhhc--cc-cccC--------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE---TEELAFLETSST--DF-RHYN--------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~---~~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv 546 (599)
.++|...+.||+|+||.||+|... +|+.||||++.... ....++.+|+.. .+ +||| ...+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv 89 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ 89 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence 456888889999999999999964 79999999997542 234667788877 66 9999 456788999
Q ss_pred ecccccc--cccccCCC-CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPE-NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++.... ....+++.++..|+.||++||+||| ..+|+||||+
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dik 142 (289)
T 1x8b_A 90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIK 142 (289)
T ss_dssp EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCC
Confidence 9999999 88887521 1245899999999999999999999 7899999996
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=146.03 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=87.8
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
.+.|.....||+|+||.||+|... +++.||||++.... ....+.+|+.+ +++||| ...+..++||||+
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 130 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELV 130 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeC
Confidence 345777788999999999999975 58899999997643 34567788888 999999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++..+ ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 131 ~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dik 175 (349)
T 2w4o_A 131 TGGELFDRIVEK---GYYSERDAADAVKQILEAVAYLH---ENGIVHRDLK 175 (349)
T ss_dssp CSCBHHHHHTTC---SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred CCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCC
Confidence 999 7888742 34899999999999999999999 7799999996
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=146.20 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=99.4
Q ss_pred cHHHHHHHhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchh------------hHHHHHHhhc--cccccC--
Q 007553 474 TFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE------------ELAFLETSST--DFRHYN-- 537 (599)
Q Consensus 474 ~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~------------~~~f~~e~~~--~l~H~n-- 537 (599)
..+++....++|...+.||+|+||.||+|...+|+.||||++...... ...+.+|+.+ .++|||
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 456777888899999999999999999999878999999998542211 2678899998 999999
Q ss_pred -----------CCCCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 -----------SHTDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 -----------~~~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
......++||||++++ .+++... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlk 161 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQ--RIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLH 161 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCT--TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred ceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCC
Confidence 1122468999999977 7777743 235899999999999999999999 7799999996
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-14 Score=139.51 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=90.9
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--------hHHHHHHhhc--cccccC------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--------ELAFLETSST--DFRHYN------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--------~~~f~~e~~~--~l~H~n------~~~~~~~l 545 (599)
++|...+.||+|+||.||+|.. .+++.||||++...... ...|.+|+.+ +++||| ...+..++
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~l 98 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRM 98 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTEE
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCeE
Confidence 4566678899999999999996 47899999998654321 1578899988 999999 23344579
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcc--ccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRK--SYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~--i~Hrdl~ 599 (599)
||||+++| .+++..+ ...++|.++..++.|+++||+||| ..+ |+||||+
T Consensus 99 v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dik 151 (287)
T 4f0f_A 99 VMEFVPCGDLYHRLLDK--AHPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLR 151 (287)
T ss_dssp EEECCTTCBHHHHHHCT--TSCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCS
T ss_pred EEEecCCCCHHHHHhcc--cCCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCC
Confidence 99999999 6777643 235899999999999999999999 555 9999996
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=141.63 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=92.5
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
+.....||+|+||.||+|.. .+++.||||.+...... ...+.+|+.+ .++||| ...+..++||||+++
T Consensus 24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 103 (295)
T 2clq_A 24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPG 103 (295)
T ss_dssp TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSE
T ss_pred CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCC
Confidence 34455799999999999995 56899999999765433 5678889988 999999 356778999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++........+++..+..++.||++||+||| ..+|+||||+
T Consensus 104 ~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~ 149 (295)
T 2clq_A 104 GSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIK 149 (295)
T ss_dssp EEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCC
Confidence 9 888876544445788999999999999999999 7799999986
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-15 Score=148.47 Aligned_cols=121 Identities=21% Similarity=0.295 Sum_probs=98.4
Q ss_pred HHHHHHhhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------
Q 007553 476 EEMIQATEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSET--EELAFLETSST--DFRHYN-------- 537 (599)
Q Consensus 476 ~~l~~at~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------- 537 (599)
+++..+.++|...+.||+|+||.||+|... +++.||||.+..... ....|.+|+.+ .++|||
T Consensus 18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 97 (322)
T 1p4o_A 18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV 97 (322)
T ss_dssp CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEE
Confidence 344455677888899999999999999853 367899999975432 24568899988 999999
Q ss_pred CCCCCcceeecccccc--cccccCCC-------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 SHTDNDDSSDEHLANN--EHFLSAPE-------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ~~~~~~~lv~e~~~~G--~~~l~~~~-------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+..++||||+++| .+++...+ ....+++.++.+++.||++||+||| ..+|+||||+
T Consensus 98 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dik 165 (322)
T 1p4o_A 98 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLA 165 (322)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCS
T ss_pred ccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCc
Confidence 5677889999999999 88886421 1245799999999999999999999 7799999996
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=142.61 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=82.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
++|...+.||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ +++||| ...+..++||||
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 84 (317)
T 2pmi_A 5 SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEF 84 (317)
T ss_dssp --------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEEC
T ss_pred cceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEe
Confidence 4566677899999999999985 46899999999754332 4678889988 999999 466778999999
Q ss_pred cccc-cccccCCC---CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN-EHFLSAPE---NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G-~~~l~~~~---~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++++ .+++.... ....+++..+..++.||++||+||| ..+|+||||+
T Consensus 85 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlk 135 (317)
T 2pmi_A 85 MDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLK 135 (317)
T ss_dssp CCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred cCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCC
Confidence 9977 87876421 2235899999999999999999999 7899999996
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.51 E-value=7.8e-15 Score=147.48 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=93.5
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch------hhHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET------EELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~------~~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
+.|...+.||+|+||.||+|.. .+|+.||||++..... ....+.+|+.+ .++||| ...+..++
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 4577778899999999999985 4689999999864321 24568899998 999999 45677899
Q ss_pred eecccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .+++..+ .....+++..+..++.||++||+||| ..+|+||||+
T Consensus 104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlk 157 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVK 157 (351)
T ss_dssp EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCC
Confidence 99999999 6666542 22345899999999999999999999 7899999996
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-14 Score=142.13 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=94.5
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
+.|...+.||+|+||.||++.. .+|+.||+|++...... ...+.+|+.+ +++||| ...+..++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 101 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET 101 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence 4577788899999999999986 46899999998764322 4678899988 999999 456778999999
Q ss_pred cccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++... .....+++..+..|+.||++||+||| ..+|+||||+
T Consensus 102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dik 151 (285)
T 3is5_A 102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLK 151 (285)
T ss_dssp CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCS
T ss_pred CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCC
Confidence 9999 7777532 12345899999999999999999999 7899999996
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=147.91 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=95.2
Q ss_pred hhhccccceeccc--CCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 482 TEDFHIKYCIGTG--GYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 482 t~~~~~~~~lg~g--~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
.++|.....||+| +||.||+|... +|+.||||++..... ....+.+|+.+ .++||| ...+..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 3457777889999 99999999964 699999999975432 24567789988 999999 46677899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||||++| .+++.... ...+++.++..|+.||++||+||| ..+|+|||||
T Consensus 104 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlk 155 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHF-MDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVK 155 (389)
T ss_dssp EEECCTTCBHHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred EEEccCCCCHHHHHhhhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 99999999 77876532 234899999999999999999999 7899999996
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.7e-15 Score=146.65 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=92.5
Q ss_pred HHhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--c-ccccC--------CCCCCc
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--D-FRHYN--------SHTDND 543 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~-l~H~n--------~~~~~~ 543 (599)
...++|...+.||+|+||.||+|... +|+.||||++..... ....+..|..+ . .+||| ...+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 34567888899999999999999974 689999999975421 23456667776 3 49999 456778
Q ss_pred ceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+++| .+++... ..+++.++..++.||+.||+||| ..+|+||||+
T Consensus 94 ~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlk 145 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLK 145 (345)
T ss_dssp EEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred EEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCC
Confidence 9999999999 7788742 24899999999999999999999 7899999996
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-14 Score=143.33 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=89.8
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc---cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST---DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~---~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||+||+|... +|+.||||++..... ...++..|+.. ..+||| ..++..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 46888889999999999999975 799999999865322 23345555544 449999 4667789999
Q ss_pred cccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+.++ .+++.... ..++|.++..|+.||+.||+||| ..+|+||||+
T Consensus 137 e~~~~~L~~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik 184 (311)
T 3p1a_A 137 ELCGPSLQQHCEAWG--ASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVK 184 (311)
T ss_dssp ECCCCBHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred eccCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCC
Confidence 999666 77776532 35999999999999999999999 6799999996
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=149.61 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=93.7
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|.....||+|+||.||+|... +|+.||||++...... ...+.+|+.+ .++||| ...+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 34666778999999999999964 7999999999654221 3568889988 999999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 96 E~~~gg~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLk 143 (476)
T 2y94_A 96 EYVSGGELFDYICKN---GRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLK 143 (476)
T ss_dssp ECCSSEEHHHHTTSS---SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCS
T ss_pred eCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCCccccc
Confidence 999999 8888742 35899999999999999999999 7899999996
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=143.07 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=98.6
Q ss_pred ccHHHHHHHhhhccccceecccCCceEEEEEe------CCCCEEEEEEecCCchh--hHHHHHHhhc--cc-cccC----
Q 007553 473 ITFEEMIQATEDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSETE--ELAFLETSST--DF-RHYN---- 537 (599)
Q Consensus 473 ~~~~~l~~at~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l-~H~n---- 537 (599)
+...++....++|...+.||+|+||.||+|.. .+++.||||.+...... ...+.+|+.+ ++ +|||
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34455555667888889999999999999974 35689999999765332 4578889988 77 7899
Q ss_pred -----CCCCCcceeecccccc--cccccCCCC-------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccc
Q 007553 538 -----SHTDNDDSSDEHLANN--EHFLSAPEN-------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQR 597 (599)
Q Consensus 538 -----~~~~~~~lv~e~~~~G--~~~l~~~~~-------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrd 597 (599)
..+...++||||+++| .+++..... ...+++.++..++.||++||+||| ..+|+|||
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~d 173 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRD 173 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCccccc
Confidence 2344589999999999 888875432 123889999999999999999999 78999999
Q ss_pred cC
Q 007553 598 LY 599 (599)
Q Consensus 598 l~ 599 (599)
|+
T Consensus 174 ik 175 (316)
T 2xir_A 174 LA 175 (316)
T ss_dssp CS
T ss_pred Cc
Confidence 96
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=144.85 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=89.0
Q ss_pred hhhccccceecccCCceEEEEEe----CCCCEEEEEEecCCch-----hhHHHHHHhhc--cccccC--------CCCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL----SSGRVVALKKLHRSET-----EELAFLETSST--DFRHYN--------SHTDN 542 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~----~~g~~vavK~l~~~~~-----~~~~f~~e~~~--~l~H~n--------~~~~~ 542 (599)
.++|...+.||+|+||.||++.. .+|+.||+|++..... ....+.+|+.+ .++||| ...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 34677788899999999999986 4789999999976421 23457778887 999999 46678
Q ss_pred cceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+++| .+++... ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlk 148 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLERE---GIFMEDTACFYLAEISMALGHLH---QKGIIYRDLK 148 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred EEEEEeCCCCCcHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCC
Confidence 89999999999 7788642 24889999999999999999999 7799999996
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=152.82 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=94.9
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
.++|...+.||+|+||.||+|... +|+.||||++..... ....+.+|+.+ .++||| ...+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 356777889999999999999964 699999999965421 13567888888 999999 466788999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||++| .+++.... ...+++.++..++.||+.||+||| ..+|+||||+
T Consensus 263 mEy~~gg~L~~~l~~~~-~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLK 313 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMG-QAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLK 313 (576)
T ss_dssp ECCCCSCBHHHHHHSSS-SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EEcCCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCc
Confidence 9999999 77777532 334899999999999999999999 7799999996
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-15 Score=144.23 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=91.0
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCC----Cc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTD----ND 543 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~----~~ 543 (599)
+.|...+.||+|+||.||+|.. .+|+.||||++...... ...|.+|+.+ +++||| .... ..
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 91 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP 91 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence 3466678899999999999995 57899999999764322 3568889988 999999 1112 24
Q ss_pred ceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+++| .++++.. ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 92 ~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk 143 (311)
T 3ork_A 92 YIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSH---QNGIIHRDVK 143 (311)
T ss_dssp EEEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred EEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCC
Confidence 8999999999 8888742 35899999999999999999999 7899999996
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=142.36 Aligned_cols=115 Identities=22% Similarity=0.270 Sum_probs=92.0
Q ss_pred hhhccccceecccCCceEEEEEe------CCCCEEEEEEecCCc--hhhHHHHHHhhc--cccccC--------CCCCCc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSE--TEELAFLETSST--DFRHYN--------SHTDND 543 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~--~~~~~f~~e~~~--~l~H~n--------~~~~~~ 543 (599)
.++|...+.||+|+||.||+|.. .+++.||||++.... ....++.+|+.+ +++||| ...+..
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 34677778899999999999984 246789999996543 235678899988 899999 466778
Q ss_pred ceeecccccc--cccccCCC----CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPE----NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~----~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+++| .+++.... ....+++.+++.++.||++||+||| ..+|+||||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlk 167 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIA 167 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCC
Confidence 9999999999 88887532 1245899999999999999999999 7899999996
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=146.02 Aligned_cols=111 Identities=21% Similarity=0.152 Sum_probs=93.6
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||+++.. +|+.||||.+..... ....+.+|+.+ .++||| ...+..++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 46777788999999999999964 689999999965432 23567888888 999999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.++..++.||+.||+||| ..+|+||||+
T Consensus 121 e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlk 168 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLK 168 (350)
T ss_dssp ECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred cCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCc
Confidence 999999 7888742 24899999999999999999999 7899999996
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-14 Score=144.64 Aligned_cols=112 Identities=17% Similarity=0.279 Sum_probs=87.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCC----EEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGR----VVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~----~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv 546 (599)
++|...+.||+|+||.||+|.. .+|+ .||+|.+..... ...+|.+|+.+ +++||| ...+..++|
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~v 94 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI 94 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEE
Confidence 4577778899999999999995 3444 368888865432 24679999988 999999 334568899
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||+++| .+++.... ..++|.+++.|+.||++||+||| ..+|+||||+
T Consensus 95 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dik 144 (327)
T 3poz_A 95 TQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLA 144 (327)
T ss_dssp EECCTTCBHHHHHHHST--TSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCC
Confidence 9999999 88887533 34899999999999999999999 7799999996
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-15 Score=146.80 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=91.7
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cc-cccC--------CCCCCcce
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DF-RHYN--------SHTDNDDS 545 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l-~H~n--------~~~~~~~l 545 (599)
.++|...+.||+|+||.||+|+. .+|+.||||++..... ....+.+|+.+ .+ +||| ...+..++
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 45788888999999999999996 4689999999975421 13456777777 44 7999 46677899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .++++.. ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 102 v~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlk 151 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKS---RRFDEARARFYAAEIISALMFLH---DKGIIYRDLK 151 (353)
T ss_dssp EEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred EEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCC
Confidence 99999999 7777642 34899999999999999999999 7899999996
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-14 Score=142.26 Aligned_cols=112 Identities=26% Similarity=0.326 Sum_probs=92.5
Q ss_pred hhccccceecccCCceEEEEEe-----CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------C--CCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-----SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------S--HTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-----~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~--~~~~~~ 544 (599)
++|...+.||+|+||.||+|.+ .+|+.||||++...... ...|.+|+.+ +++||| . ..+..+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 120 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 120 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence 3466678899999999999984 36889999999765433 5678999998 999999 1 234689
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++...+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 121 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dik 172 (326)
T 2w1i_A 121 LIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLA 172 (326)
T ss_dssp EEECCCTTCBHHHHHHHST--TSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred EEEECCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCC
Confidence 999999999 88887543 34899999999999999999999 7899999996
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-14 Score=143.62 Aligned_cols=114 Identities=19% Similarity=0.178 Sum_probs=89.5
Q ss_pred HhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCC----CCccee
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHT----DNDDSS 546 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~----~~~~lv 546 (599)
..++|...+.||+|+||.||+|+.. |+.||||++............|+.. .++||| ... ...++|
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv 113 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLI 113 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEE
T ss_pred cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEE
Confidence 3467888899999999999999985 8999999996543322223333433 569999 122 568999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCC-----CccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRK-----YRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~-----~~~i~Hrdl~ 599 (599)
|||+++| .++++.. .+++.++..++.||++||+|||+.+ .++|+||||+
T Consensus 114 ~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dik 169 (337)
T 3mdy_A 114 TDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLK 169 (337)
T ss_dssp ECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCC
T ss_pred EeccCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccc
Confidence 9999999 8888743 3899999999999999999999432 3499999996
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=141.71 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=89.3
Q ss_pred hccccceecccCCceEEEEEe-----CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------C--CCCCcc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-----SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------S--HTDNDD 544 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-----~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~--~~~~~~ 544 (599)
.|...+.||+|+||.||+|.+ .+|+.||||++...... ...+.+|+.+ .++||| . ..+..+
T Consensus 22 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 101 (302)
T 4e5w_A 22 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK 101 (302)
T ss_dssp GEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEE
T ss_pred hhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEE
Confidence 356667899999999999984 36889999999754332 4678889988 999999 1 236678
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 102 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dik 153 (302)
T 4e5w_A 102 LIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLA 153 (302)
T ss_dssp EEEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEEEeCCCCcHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCc
Confidence 999999999 88886432 34899999999999999999999 7899999986
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-14 Score=145.44 Aligned_cols=111 Identities=15% Similarity=0.056 Sum_probs=87.9
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCch---------hhHHHHHHhhc--ccc----------------
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET---------EELAFLETSST--DFR---------------- 534 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~---------~~~~f~~e~~~--~l~---------------- 534 (599)
.++|...+.||+|+||.||+|+. +|+.||||++..... ....+.+|+.+ +++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 34577778899999999999997 689999999975421 12567888877 554
Q ss_pred ----------ccC--------C-------------CCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHH
Q 007553 535 ----------HYN--------S-------------HTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKG 581 (599)
Q Consensus 535 ----------H~n--------~-------------~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~g 581 (599)
||| . ..+..++||||+++| .+.+.. ..+++.+...|+.||++|
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~----~~~~~~~~~~i~~qi~~a 173 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT----KLSSLATAKSILHQLTAS 173 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT----TCCCHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh----cCCCHHHHHHHHHHHHHH
Confidence 455 1 267899999999999 555543 248999999999999999
Q ss_pred HhhhhCCCCccccccccC
Q 007553 582 FKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 582 l~yLH~~~~~~i~Hrdl~ 599 (599)
|+|||+ ..+|+|||||
T Consensus 174 L~~lH~--~~~ivHrDlK 189 (336)
T 2vuw_A 174 LAVAEA--SLRFEHRDLH 189 (336)
T ss_dssp HHHHHH--HHCCBCSCCC
T ss_pred HHHHHH--hCCEeECCCC
Confidence 999992 3689999997
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-14 Score=139.30 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=94.8
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
.++|.....||+|+||.||+|.. .+|+.||||.+...... ...+.+|+.+ .++||| ...+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 35677788899999999999985 57999999999654321 3568889988 999999 456778999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++..+ ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 90 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~ 139 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNR--VKPFSENEARHFMHQIITGMLYLH---SHGILHRDLT 139 (278)
T ss_dssp EECCTTEEHHHHHHTC--SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCC
T ss_pred EecCCCCcHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 9999999 8888753 245899999999999999999999 7799999986
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-14 Score=142.81 Aligned_cols=110 Identities=25% Similarity=0.325 Sum_probs=90.9
Q ss_pred ccccceecccCCceEEEEEeCC-----CCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 485 FHIKYCIGTGGYGSVYRAQLSS-----GRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~~-----g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
|...+.||+|+||.||+|.... +..||||.+..... ....|.+|+.+ .++||| ...+..++||
T Consensus 46 ~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 125 (333)
T 1mqb_A 46 VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIIT 125 (333)
T ss_dssp EEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred hhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEE
Confidence 3445789999999999998632 24699999976432 24578899988 999999 4667889999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+. ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 126 e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik 174 (333)
T 1mqb_A 126 EYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLA 174 (333)
T ss_dssp ECCTTEEHHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred eCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence 999999 88887532 35899999999999999999999 7799999996
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.8e-15 Score=151.82 Aligned_cols=112 Identities=19% Similarity=0.165 Sum_probs=86.5
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
.++|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+|+.+ .++||| ...+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 45688888999999999999985 568999999996532 123567788887 999999 456778999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCC-ccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKY-RKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~-~~i~Hrdl~ 599 (599)
||||++| .+++... ..+++.++..++.||++||+||| . .+|+||||+
T Consensus 227 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlk 276 (446)
T 4ejn_A 227 MEYANGGELFFHLSRE---RVFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLK 276 (446)
T ss_dssp ECCCSSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCC
T ss_pred EeeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCC
Confidence 9999999 7777642 34899999999999999999999 5 789999996
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=143.90 Aligned_cols=112 Identities=22% Similarity=0.281 Sum_probs=93.9
Q ss_pred hhccccceecccCCceEEEEEe-----CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC----------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-----SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN----------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-----~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n----------~~~~~~~ 544 (599)
++|...+.||+|+||.||+|.+ .+++.||||++...... ...+.+|+.+ +++||| ...+..+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 4566678899999999999984 36889999999776443 4668899998 999999 2455688
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++.... ..+++.++..|+.||++||+||| ..+|+||||+
T Consensus 103 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dik 154 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQRHR--ARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLA 154 (327)
T ss_dssp EEEECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEEeecCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCC
Confidence 999999999 88887532 24899999999999999999999 7899999996
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-14 Score=140.80 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=90.7
Q ss_pred ccccceecccCCceEEEEEeC-----CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC----------CCCCCcce
Q 007553 485 FHIKYCIGTGGYGSVYRAQLS-----SGRVVALKKLHRSET--EELAFLETSST--DFRHYN----------SHTDNDDS 545 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~-----~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n----------~~~~~~~l 545 (599)
|...+.||+|+||.||++.+. +|+.||||++..... ....|.+|+.+ +++||| ......++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 466678999999999998763 678999999976532 24678899998 999999 12456789
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .+++.... +++.++..++.||++||+||| ..+|+||||+
T Consensus 113 v~e~~~~~~L~~~l~~~~----~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dik 161 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRHS----IGLAQLLLFAQQICEGMAYLH---AQHYIHRDLA 161 (318)
T ss_dssp EECCCTTCBHHHHGGGSC----CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEecccCCcHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHH---hCCccCCCCc
Confidence 99999999 88887532 899999999999999999999 7899999996
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-14 Score=139.24 Aligned_cols=111 Identities=25% Similarity=0.295 Sum_probs=90.1
Q ss_pred hccccceecccCCceEEEEEeCC----CCEEEEEEecCCch--hhHHHHHHhhc--cccccC---------CCCCCccee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSS----GRVVALKKLHRSET--EELAFLETSST--DFRHYN---------SHTDNDDSS 546 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~----g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n---------~~~~~~~lv 546 (599)
.|...+.||+|+||.||+|...+ +..||||.+..... ....|.+|+.+ +++||| ...+..++|
T Consensus 26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 105 (298)
T 3f66_A 26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 105 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred ehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEE
Confidence 35556789999999999998632 23689999876433 24678899988 999999 245567899
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 106 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dik 155 (298)
T 3f66_A 106 LPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLA 155 (298)
T ss_dssp EECCTTCBHHHHHHCTT--CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred EeCCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCc
Confidence 9999999 88887533 34899999999999999999999 7899999996
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=138.94 Aligned_cols=106 Identities=18% Similarity=0.202 Sum_probs=89.9
Q ss_pred ceecccCCceEEEEEeC---CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCcceeecccccc-
Q 007553 489 YCIGTGGYGSVYRAQLS---SGRVVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~---~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G- 553 (599)
..||+|+||.||+|... +++.||||.+..... ....+.+|+.+ .++||| ...+..++||||+++|
T Consensus 16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~ 95 (287)
T 1u59_A 16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGP 95 (287)
T ss_dssp EEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEE
T ss_pred ccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEEEEeCCCCC
Confidence 37999999999999853 578899999977432 35678899988 899999 4556789999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++..+ ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 96 L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk 137 (287)
T 1u59_A 96 LHKFLVGK--REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLA 137 (287)
T ss_dssp HHHHHTTC--TTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred HHHHHHhC--CccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCc
Confidence 8888743 345899999999999999999999 7899999986
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-14 Score=156.58 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=89.0
Q ss_pred ceecccCCceEEEEEeC---CCCEEEEEEecCCchh---hHHHHHHhhc--cccccC-------CCCCCcceeecccccc
Q 007553 489 YCIGTGGYGSVYRAQLS---SGRVVALKKLHRSETE---ELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~---~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G 553 (599)
+.||+|+||.||+|.+. .++.||||+++..... ..+|.+|+.+ +++||| ...+..++|||||++|
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g 454 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG 454 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCC
Confidence 46999999999999753 4678999999764322 4679999998 999999 4556789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++++.. ..++|.++..|+.||++||+||| ..+|+||||+
T Consensus 455 ~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLk 496 (635)
T 4fl3_A 455 PLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLA 496 (635)
T ss_dssp EHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred CHHHHHhhC---CCCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCC
Confidence 8888742 35899999999999999999999 7899999996
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-14 Score=148.59 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=93.0
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
.++|.....||+|+||.||+|.. .+|+.||+|.+..... +...+.+|+.+ .++||| ...+..++||
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~ 89 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF 89 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence 45677788899999999999985 5789999999976432 24568899988 999999 4667789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+ ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 90 E~~~gg~L~~~i~~~---~~~~e~~~~~i~~qil~aL~~lH---~~givHrDlK 137 (444)
T 3soa_A 90 DLVTGGELFEDIVAR---EYYSEADASHCIQQILEAVLHCH---QMGVVHRNLK 137 (444)
T ss_dssp CCCBCCBHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCS
T ss_pred EeCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 999999 6777643 34899999999999999999999 7899999996
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-12 Score=129.28 Aligned_cols=335 Identities=10% Similarity=0.082 Sum_probs=178.2
Q ss_pred ccccccccccCCC-CCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCc---CcccCCcCCCCCCCCCEEeccCCcccc
Q 007553 7 AAELSQLNFTCFP-NLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNR---LTGTIPSEIGSLRDLLELNLSYNILNG 82 (599)
Q Consensus 7 ~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~n~~~~ 82 (599)
+++|...+|.+++ .|+.+.+.. .++.--..+|.+|++|+.+.+..+. ++..-..+|.++.+|+.+.+..+ ++.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 5566666676664 467777753 4444444556667777777766542 44444456666666666666554 333
Q ss_pred cCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccC
Q 007553 83 SIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162 (599)
Q Consensus 83 ~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~ 162 (599)
.....|..+.+|+.+.+..+ +..+....|..+.+|+.+.+..+ +..+...+|.+ .+|+.+.+..+-. ......|..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~ 203 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSE 203 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTT
T ss_pred ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhh
Confidence 44455666666776666543 22234455666666666666543 33233334433 4566655544321 122334555
Q ss_pred CCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEE
Q 007553 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLD 242 (599)
Q Consensus 163 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 242 (599)
+..|.......+.........+........ ....+.....+..+.+.. .+...-..+|..+..|+.+.
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~ 271 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDY-----------ALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVK 271 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCE-----------EEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEE
T ss_pred ccccceecccccccccccceeecccccccc-----------cccccccccccceEEcCC-cceEcccceeeecccccEEe
Confidence 555555544333221110000000000000 000111122333444432 22223345677778888887
Q ss_pred ccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCcc
Q 007553 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322 (599)
Q Consensus 243 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 322 (599)
+..+... .....|..++.|+.+.+. +.+.......|.++.+|+.+++..+ ++.+-..+|.+|.+|+.+.+..+ ++.
T Consensus 272 lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~ 347 (394)
T 4gt6_A 272 MPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK 347 (394)
T ss_dssp CCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB
T ss_pred cccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE
Confidence 7655432 445567777888888885 3344444566777888888888654 55455567888888888888654 554
Q ss_pred CCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCc
Q 007553 323 SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNN 367 (599)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 367 (599)
.-..+|.++.+|+.+++.++.... ..+....+|+.+.+..+.
T Consensus 348 I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 348 IPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred EhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 445678888888888888776542 345556677777766553
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-14 Score=144.39 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=91.8
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cc-cccC--------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DF-RHYN--------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv 546 (599)
++|...+.||+|+||.||+|+.. +|+.||||++..... ....+.+|+.+ ++ +||| ...+..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 46777888999999999999964 689999999975421 23457778777 55 8999 466788999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++... ..+++.++..++.||+.||+||| ..+|+||||+
T Consensus 89 ~e~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlk 137 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLK 137 (345)
T ss_dssp ECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred EeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCC
Confidence 9999999 7777642 24899999999999999999999 7899999996
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-14 Score=136.76 Aligned_cols=112 Identities=15% Similarity=0.051 Sum_probs=94.6
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
.++|.....||+|+||.||+|... +|+.||||.+..... ....+.+|+.+ .++||| ..++..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 456777888999999999999964 689999999865432 24678889888 899999 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.. ...+++.+...++.||++||+||| ..+|+||||+
T Consensus 86 ~~~~~~L~~~l~~---~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~ 132 (276)
T 2yex_A 86 YCSGGELFDRIEP---DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIK 132 (276)
T ss_dssp CCTTEEGGGGSBT---TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred ecCCCcHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence 99999 888874 235899999999999999999999 7899999985
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-14 Score=138.35 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=93.3
Q ss_pred hhhccccceecccCCceEEEEEeCC----CCEEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSS----GRVVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~----g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv 546 (599)
.++|...+.||+|+||.||+|...+ +..||||.+..... ....|.+|+.+ .++||| ...+..++|
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v 90 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWII 90 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEEE
Confidence 4567778889999999999998532 34699999976532 35678899988 999999 455677999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 91 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk 140 (281)
T 3cc6_A 91 MELYPYGELGHYLERNK--NSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIA 140 (281)
T ss_dssp EECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCS
T ss_pred EecCCCCCHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCc
Confidence 9999999 88887532 34899999999999999999999 7899999986
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-14 Score=142.00 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=92.2
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------C----CCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------S----HTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~----~~~~~~lv 546 (599)
++|...+.||+|+||.||++.. .+|+.||||++..... ....+.+|+.+ .++||| . .....++|
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv 108 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLL 108 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEE
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEE
Confidence 4577778899999999999995 5799999999865443 35678899988 999999 1 23467899
Q ss_pred ecccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++... .....+++.++..++.||++||+||| ..+|+||||+
T Consensus 109 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlk 161 (317)
T 2buj_A 109 LPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLK 161 (317)
T ss_dssp EECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 9999999 7777642 22356899999999999999999999 7799999996
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-14 Score=150.30 Aligned_cols=114 Identities=16% Similarity=0.192 Sum_probs=94.4
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||+|+.. +|+.||||++...... ...+..|+.+ +++||| ...+.+++||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 45666788999999999999974 6999999999654321 3567888888 999999 4567789999
Q ss_pred cccccc--cccccCCC-CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPE-NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++.... ....+++.+...++.||+.||+||| ..+|+|||||
T Consensus 265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLK 316 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLK 316 (543)
T ss_dssp CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCC
Confidence 999999 77776532 2346899999999999999999999 7899999996
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-14 Score=139.47 Aligned_cols=112 Identities=14% Similarity=0.045 Sum_probs=94.0
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
.+.|...+.||+|+||.||+|... ++..||+|++..... ....+.+|+.+ +++||| ...+..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 345777788999999999999964 578999999876432 35678899988 999999 466778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++... ..+++.+...|+.|+++||+||| ..+|+||||+
T Consensus 88 ~~~~~L~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlk 133 (277)
T 3f3z_A 88 CTGGELFERVVHK---RVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLK 133 (277)
T ss_dssp CCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred cCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCC
Confidence 9999 7777642 34899999999999999999999 7899999986
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-14 Score=139.42 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=93.3
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
.++|.....||+|+||.||+|... +++.||||.+...... ...+.+|+.+ .++||| ...+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 456777888999999999999864 5789999998653321 3568888888 899999 456778999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++... ..+++.++..++.||+.||+||| ..+|+||||+
T Consensus 88 ~e~~~~~~l~~~l~~~---~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlk 136 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCH---SKRVIHRDIK 136 (279)
T ss_dssp ECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCC
T ss_pred EecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCC
Confidence 9999999 7777642 34899999999999999999999 7899999986
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-14 Score=148.79 Aligned_cols=111 Identities=22% Similarity=0.198 Sum_probs=83.2
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC-------C------CCCCc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN-------S------HTDND 543 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n-------~------~~~~~ 543 (599)
++|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+|+.+ .++||| . ..+..
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 132 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL 132 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence 4577778899999999999985 478999999986532 224678899998 999999 1 12467
Q ss_pred ceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+.++ .+++... ..+++.++..++.||++||+||| ..+|+|||||
T Consensus 133 ~lv~e~~~~~L~~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlK 183 (458)
T 3rp9_A 133 YVVLEIADSDFKKLFRTP---VYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLK 183 (458)
T ss_dssp EEEECCCSEEHHHHHHSS---CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred EEEEeccccchhhhcccC---CCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCC
Confidence 9999999877 7777742 35899999999999999999999 7899999997
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-14 Score=142.91 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=94.1
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchh------------------hHHHHHHhhc--cccccC-----
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE------------------ELAFLETSST--DFRHYN----- 537 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~------------------~~~f~~e~~~--~l~H~n----- 537 (599)
++|.....||+|+||.||+|.. +|+.||||++...... ...|.+|+.+ +++|||
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~ 109 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE 109 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence 4577778899999999999998 8999999998653221 1678999998 999999
Q ss_pred ---CCCCCcceeecccccc--ccc------ccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCC-ccccccccC
Q 007553 538 ---SHTDNDDSSDEHLANN--EHF------LSAPENYERVDFSPDFSIADQSKKGFKLLADRKY-RKSYYQRLY 599 (599)
Q Consensus 538 ---~~~~~~~lv~e~~~~G--~~~------l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~-~~i~Hrdl~ 599 (599)
...+..++||||+++| .++ +... ....+++.++..++.||++||+||| . .+|+||||+
T Consensus 110 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~ 179 (348)
T 2pml_X 110 GIITNYDEVYIIYEYMENDSILKFDEYFFVLDKN-YTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVK 179 (348)
T ss_dssp EEEESSSEEEEEEECCTTCBSSEESSSEESSCSS-SCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCC
T ss_pred EEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhc-cccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCC
Confidence 4567889999999999 888 5432 2456899999999999999999999 5 899999986
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-14 Score=139.10 Aligned_cols=110 Identities=24% Similarity=0.335 Sum_probs=90.2
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC-------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET---EELAFLETSST--DFRHYN-------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~ 550 (599)
+.|.....||+|+||.||+|... ..||||.+..... ....|.+|+.+ .++||| ...+..++||||+
T Consensus 24 ~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~ 101 (289)
T 3og7_A 24 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWC 101 (289)
T ss_dssp TSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred cceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEEEec
Confidence 34666778999999999999863 4699999875432 24678899998 999999 4566789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 102 ~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlk 147 (289)
T 3og7_A 102 EGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLK 147 (289)
T ss_dssp CEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred CCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCc
Confidence 999 78886432 45899999999999999999999 7899999996
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-14 Score=143.81 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=92.9
Q ss_pred HhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
..++|.....||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ +++||| ...+..++|
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 111 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI 111 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence 455788888999999999999984 57899999999754332 3467788888 999999 466778999
Q ss_pred ecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++. .+++... ..+++.++..|+.||++||+||| ..+|+||||+
T Consensus 112 ~e~~~~~L~~~~~~~---~~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlk 159 (329)
T 3gbz_A 112 FEYAENDLKKYMDKN---PDVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLK 159 (329)
T ss_dssp EECCSEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EecCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCC
Confidence 9999977 8888743 24899999999999999999999 7899999996
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-14 Score=140.91 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=94.7
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-C-------------------
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN-S------------------- 538 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-~------------------- 538 (599)
.++|.....||+|+||.||+|.. .+|+.||||++.........+.+|+.+ .++||| .
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 84 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV 84 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence 45677788999999999999995 479999999997654445778899988 999999 0
Q ss_pred -CCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 -HTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 -~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..+..++||||+++| .+++.... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 85 ~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlk 143 (303)
T 1zy4_A 85 KKKSTLFIQMEYCENGTLYDLIHSEN--LNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLK 143 (303)
T ss_dssp -CEEEEEEEEECCCSCBHHHHHHHSC--GGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred ccCCceEEEEecCCCCCHHHhhhccc--cccchHHHHHHHHHHHHHHHHHH---hCCeecccCC
Confidence 135678999999999 88887532 34788999999999999999999 7799999986
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-14 Score=141.51 Aligned_cols=111 Identities=18% Similarity=0.160 Sum_probs=93.9
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch-------hhHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET-------EELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~-------~~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
+.|...+.||+|+||.||+|... +|+.||||.+..... ...++.+|+.+ .++||| ...+..+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV 91 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 45777788999999999999964 689999999865422 14568899988 999999 4567789
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++..+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 92 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dik 142 (321)
T 2a2a_A 92 LILELVSGGELFDFLAQK---ESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLK 142 (321)
T ss_dssp EEECCCCSCBHHHHHHTC---SCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred EEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 999999999 8888742 35899999999999999999999 7899999986
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-14 Score=146.66 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=91.7
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh----hHHHHHHhhc--cc-cccC--------CCCCCcce
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE----ELAFLETSST--DF-RHYN--------SHTDNDDS 545 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~----~~~f~~e~~~--~l-~H~n--------~~~~~~~l 545 (599)
.++|...+.||+|+||.||+|+.. +++.||||++...... ...+..|..+ ++ +||| ...+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 457888889999999999999964 5889999999754221 2346677776 44 8999 46677899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .+++... ..+++.++..++.||+.||+||| ..+|+|||||
T Consensus 131 V~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLK 180 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLK 180 (396)
T ss_dssp EEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred EEEcCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCC
Confidence 99999999 7777642 34899999999999999999999 7899999996
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-14 Score=141.48 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=87.5
Q ss_pred cceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--ccc-ccC--------CCCCCcceeecccccc--
Q 007553 488 KYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFR-HYN--------SHTDNDDSSDEHLANN-- 553 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~-H~n--------~~~~~~~lv~e~~~~G-- 553 (599)
.+.||+|+||.||+|... +|+.||||++... ....+.+|+.+ .+. ||| ...+..++||||+++|
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L 93 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR--MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGEL 93 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG--GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh--hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcH
Confidence 367999999999999964 6899999999653 23456678877 665 999 4667789999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++..+ ..+++.++..|+.||++||+||| ..+|+||||+
T Consensus 94 ~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlk 133 (325)
T 3kn6_A 94 FERIKKK---KHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLK 133 (325)
T ss_dssp HHHHHHC---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCC
Confidence 8888743 35899999999999999999999 7899999996
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-14 Score=147.64 Aligned_cols=109 Identities=22% Similarity=0.116 Sum_probs=89.8
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCC------CC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHT------DN 542 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~------~~ 542 (599)
++|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+|+.+ .++||| ... ..
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~ 141 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD 141 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCe
Confidence 4577778899999999999984 468999999997542 224678889988 899999 111 34
Q ss_pred cceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++|||||++| .+++.. .+++.++..++.||++||+||| ..+|+|||||
T Consensus 142 ~~lv~E~~~~~l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlk 191 (464)
T 3ttj_A 142 VYLVMELMDANLCQVIQM-----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLK 191 (464)
T ss_dssp EEEEEECCSEEHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred EEEEEeCCCCCHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 59999999999 666653 2899999999999999999999 7799999996
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-14 Score=142.49 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=89.6
Q ss_pred HhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh------hHHHHHHhhc--cccccC--------CCCCCc
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE------ELAFLETSST--DFRHYN--------SHTDND 543 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~------~~~f~~e~~~--~l~H~n--------~~~~~~ 543 (599)
..+.|.....||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ .++||| ...+..
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI 87 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence 345677788899999999999996 46899999998653221 2468889988 999999 467788
Q ss_pred ceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||++++ .+++... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 88 ~lv~e~~~~~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlk 139 (346)
T 1ua2_A 88 SLVFDFMETDLEVIIKDN--SLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLK 139 (346)
T ss_dssp EEEEECCSEEHHHHHTTC--CSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred EEEEEcCCCCHHHHHHhc--CcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCC
Confidence 9999999988 7777753 245899999999999999999999 7899999996
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-14 Score=145.01 Aligned_cols=112 Identities=19% Similarity=0.171 Sum_probs=86.3
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc---cccccC--------CCCCCcce
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST---DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~---~l~H~n--------~~~~~~~l 545 (599)
.++|...+.||+|+||.||+|+.. +++.||||++..... ....+..|..+ .++||| ...+..++
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 356888889999999999999964 588999999965432 13345566554 789999 46678899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .++++.. ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 117 v~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlk 166 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRE---RCFLEPRARFYAAEIASALGYLH---SLNIVYRDLK 166 (373)
T ss_dssp EEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred EEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCC
Confidence 99999999 7777642 24788999999999999999999 7899999996
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-14 Score=140.25 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=91.8
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
++|...+.||+|+||.||+|... +|+.||||++...... ...+.+|+.+ +++||| ...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 34666788999999999999964 5899999998654322 4568889988 999999 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.. ...+++.+...++.|+++||+||| ..+|+||||+
T Consensus 83 ~~~~~~l~~~~~~---~~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlk 129 (311)
T 4agu_A 83 YCDHTVLHELDRY---QRGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVK 129 (311)
T ss_dssp CCSEEHHHHHHHT---SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred eCCCchHHHHHhh---hcCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCC
Confidence 99999 666653 234899999999999999999999 7899999996
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-14 Score=138.27 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=93.6
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch-------hhHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET-------EELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~-------~~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
++|.....||+|+||.||+|... +|+.||||.+..... ....+.+|+.+ .++||| ...+..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 45777788999999999999975 689999999865421 14678899988 999999 4567789
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++..+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 85 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~ 135 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEK---ESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLK 135 (283)
T ss_dssp EEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEEeecCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCC
Confidence 999999999 8888642 34899999999999999999999 7899999986
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-14 Score=144.00 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=90.5
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DF-RHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~e~~ 550 (599)
++|...+.||+|+||.||+|.. .+|+.||||.+..... ...+.+|+.+ .+ +||| ..++..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR-APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL 87 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS-SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc-hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC
Confidence 4577778899999999999995 5789999999865432 3457788887 88 9999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++... ...+++.++..|+.||++||+||| ..+|+||||+
T Consensus 88 -~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlk 132 (330)
T 2izr_A 88 -GPSLEDLFDLC--DRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVK 132 (330)
T ss_dssp -CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred -CCCHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence 66 8888753 235999999999999999999999 7799999996
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-14 Score=139.71 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=91.4
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+.|.....||+|+||.||+|... +|+.||+|.+...... ...|.+|+.+ .++||| ...+..++||||+
T Consensus 19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 98 (302)
T 2j7t_A 19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFC 98 (302)
T ss_dssp GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECC
T ss_pred cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeC
Confidence 45666778999999999999975 5899999998765433 5678899988 899999 4567889999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 99 ~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk 144 (302)
T 2j7t_A 99 PGGAVDAIMLELD--RGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLK 144 (302)
T ss_dssp TTEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCS
T ss_pred CCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCC
Confidence 999 77776422 34899999999999999999999 7799999986
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=143.48 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=91.8
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||+|.. .+|+.||||.+...... ...+.+|+.+ .++||| ...+..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 4566678899999999999995 57899999998653221 3468889988 999999 4567789999
Q ss_pred cccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+.++ .+++..+ ..+++.++..++.||+.||+||| ..+|+||||+
T Consensus 89 E~~~g~l~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlk 135 (336)
T 3h4j_B 89 EYAGGELFDYIVEK---KRMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLK 135 (336)
T ss_dssp CCCCEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCS
T ss_pred ECCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCc
Confidence 999544 7777642 34899999999999999999999 7899999996
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-14 Score=142.59 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=89.4
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC--------CCCCCcceeecc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DF-RHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~e~ 549 (599)
.++|.....||+|+||.||+|... +|+.||||.+...... +.+|+++ ++ +||| .+++..++||||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~---~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~ 97 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD---PTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTEL 97 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC---CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECC
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC---hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeC
Confidence 456777788999999999999964 6899999999764322 3346655 55 8999 466778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++..+ ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 98 ~~gg~L~~~i~~~---~~~~~~~~~~~~~qi~~al~~lH---~~givHrDlk 143 (342)
T 2qr7_A 98 MKGGELLDKILRQ---KFFSEREASAVLFTITKTVEYLH---AQGVVHRDLK 143 (342)
T ss_dssp CCSCBHHHHHHTC---TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred CCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCC
Confidence 9999 7777642 34899999999999999999999 7899999996
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-14 Score=140.94 Aligned_cols=106 Identities=10% Similarity=0.067 Sum_probs=89.3
Q ss_pred cceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--c-ccccC--------CCCCCcceeecccccc-
Q 007553 488 KYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--D-FRHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~-l~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
.+.||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ + .+||| ...+..++||||+++|
T Consensus 18 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~ 97 (316)
T 2ac3_A 18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGS 97 (316)
T ss_dssp CCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCB
T ss_pred CceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCc
Confidence 35699999999999984 57999999999765433 5678889887 5 58999 4567889999999999
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 98 L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlk 138 (316)
T 2ac3_A 98 ILSHIHKR---RHFNELEASVVVQDVASALDFLH---NKGIAHRDLK 138 (316)
T ss_dssp HHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred HHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCC
Confidence 8888742 34899999999999999999999 7799999996
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-14 Score=143.75 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=92.0
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch----hhHHHHHHhhc--cc-cccC--------CCCCCcce
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET----EELAFLETSST--DF-RHYN--------SHTDNDDS 545 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~----~~~~f~~e~~~--~l-~H~n--------~~~~~~~l 545 (599)
.++|.....||+|+||.||+|... +|+.||||++..... ....+..|..+ .+ +||+ ...+..++
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 98 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 98 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence 457888889999999999999975 478999999975421 13456777776 44 8998 45677899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .+++... ..+++.++..++.||+.||+||| ..+|+||||+
T Consensus 99 v~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlk 148 (353)
T 2i0e_A 99 VMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLK 148 (353)
T ss_dssp EEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred EEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCC
Confidence 99999999 7788742 24899999999999999999999 7899999996
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-14 Score=141.44 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=86.1
Q ss_pred HhhhccccceecccCCceEEEEEeCC-C---CEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCC-
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLSS-G---RVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDN- 542 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~~-g---~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~- 542 (599)
..++|...+.||+|+||.||+|.... + ..||||.+.... .....|.+|+.+ +++||| ...+.
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 34567778899999999999999643 3 279999997642 235678999998 999999 12222
Q ss_pred -----cceeecccccc--cccccCCC---CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 -----DDSSDEHLANN--EHFLSAPE---NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 -----~~lv~e~~~~G--~~~l~~~~---~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+++| .+++.... ....+++.++..|+.||++||+||| ..+|+||||+
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dik 164 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLA 164 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCC
Confidence 28999999999 77776421 2235899999999999999999999 7899999996
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=136.05 Aligned_cols=109 Identities=23% Similarity=0.289 Sum_probs=87.8
Q ss_pred cccceecccCCceEEEEEeC-CC---CEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCC-cceeec
Q 007553 486 HIKYCIGTGGYGSVYRAQLS-SG---RVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDN-DDSSDE 548 (599)
Q Consensus 486 ~~~~~lg~g~~g~v~~~~~~-~g---~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~-~~lv~e 548 (599)
...+.||+|+||.||+|... ++ ..||+|.+..... ....|.+|+.+ +++||| ...+. .++|||
T Consensus 24 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e 103 (298)
T 3pls_A 24 HSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLP 103 (298)
T ss_dssp EEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEC
T ss_pred ccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEe
Confidence 34577999999999999852 33 3799999976433 24678899988 999999 23333 489999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 104 ~~~~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dik 151 (298)
T 3pls_A 104 YMCHGDLLQFIRSP--QRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLA 151 (298)
T ss_dssp CCTTCBHHHHHHCT--TCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred cccCCCHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 99999 8888753 345899999999999999999999 7799999996
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-13 Score=120.47 Aligned_cols=107 Identities=31% Similarity=0.312 Sum_probs=74.2
Q ss_pred CCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeec
Q 007553 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125 (599)
Q Consensus 46 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 125 (599)
.+++++++|.++ .+|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467777777776 455544 36777777777777766666777777777777777777766555667777777777777
Q ss_pred ccccccCCccccCCCcccEEecccCccCCC
Q 007553 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGP 155 (599)
Q Consensus 126 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 155 (599)
|.+++..++.+.++++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777766555677777777777777766543
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-14 Score=143.68 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=89.1
Q ss_pred hccccceecccCCceEEEEEe-CCCCE----EEEEEecCCchh--hHHHHHHhhc--cccccC-------CCCCCcceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRV----VALKKLHRSETE--ELAFLETSST--DFRHYN-------SHTDNDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~----vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------~~~~~~~lv~ 547 (599)
+|.....||+|+||.||+|.. .+|+. ||+|.+...... ...+.+|+.+ .++||| ...+..++||
T Consensus 14 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~ 93 (325)
T 3kex_A 14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQLVT 93 (325)
T ss_dssp TEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEEEE
T ss_pred HceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEEEE
Confidence 466677899999999999995 34543 888887543321 3456778777 899999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 94 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dik 142 (325)
T 3kex_A 94 QYLPLGSLLDHVRQHR--GALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLA 142 (325)
T ss_dssp ECCTTCBSHHHHHSSG--GGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred EeCCCCCHHHHHHHcc--ccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccc
Confidence 999999 77887532 35899999999999999999999 7799999996
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-14 Score=138.24 Aligned_cols=109 Identities=19% Similarity=0.161 Sum_probs=92.5
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
.|...+.||+|+||.||+|.. .+|+.||||.+..... ....+.+|+.+ .++||| ...+..++||||+
T Consensus 23 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 102 (303)
T 3a7i_A 23 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL 102 (303)
T ss_dssp TEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeC
Confidence 466677899999999999985 4689999999975432 24678889988 899999 3567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.. ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 103 ~~~~L~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~ 146 (303)
T 3a7i_A 103 GGGSALDLLEP----GPLDETQIATILREILKGLDYLH---SEKKIHRDIK 146 (303)
T ss_dssp TTEEHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCC
Confidence 999 778764 24899999999999999999999 7799999986
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-14 Score=140.49 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=90.5
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---------hhHHHHHHhhc--cccccC-------CCCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---------EELAFLETSST--DFRHYN-------SHTDN 542 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---------~~~~f~~e~~~--~l~H~n-------~~~~~ 542 (599)
.++|.....||+|+||.||+|.. .+|+.||||.+..... ....+.+|+.+ +++||| ...+.
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 35677788899999999999986 4688999999865321 12357889988 999999 34455
Q ss_pred cceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+++| .+++.. ...+++.+...++.||++||+||| ..+|+||||+
T Consensus 89 ~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk 141 (322)
T 2ycf_A 89 YYIVLELMEGGELFDKVVG---NKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLK 141 (322)
T ss_dssp EEEEEECCTTEETHHHHST---TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred eEEEEecCCCCcHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 89999999999 777764 235899999999999999999999 7899999986
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-14 Score=142.20 Aligned_cols=116 Identities=14% Similarity=0.071 Sum_probs=93.1
Q ss_pred HHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cc-----cccC--------CCCCC
Q 007553 479 IQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DF-----RHYN--------SHTDN 542 (599)
Q Consensus 479 ~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-----~H~n--------~~~~~ 542 (599)
....++|...+.||+|+||.||+|.. .+|+.||||++.........+..|+.+ .+ +||| ...+.
T Consensus 31 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~ 110 (360)
T 3llt_A 31 MLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDH 110 (360)
T ss_dssp CEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTE
T ss_pred eEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCe
Confidence 33456788888999999999999996 568999999997654444556666665 44 4999 35677
Q ss_pred cceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+ +| .+++.... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 111 ~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlk 164 (360)
T 3llt_A 111 MCLIFEPL-GPSLYEIITRNN-YNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLK 164 (360)
T ss_dssp EEEEECCC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred eEEEEcCC-CCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCC
Confidence 89999999 55 78887532 235899999999999999999999 7899999996
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-14 Score=138.48 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=88.8
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHH-HHhhc--cccccC--------CCCCCcceee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFL-ETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~-~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
.++|.....||+|+||.||+|.. .+|+.||||++...... ..++. ++... .++||| ..++..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 35677788899999999999996 57899999999764322 23333 33333 889999 4677889999
Q ss_pred cccccc-cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCc-cccccccC
Q 007553 548 EHLANN-EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYR-KSYYQRLY 599 (599)
Q Consensus 548 e~~~~G-~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~-~i~Hrdl~ 599 (599)
||++++ .+++... .....++|.++..|+.||++||+||| .. +|+||||+
T Consensus 86 e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlk 137 (290)
T 3fme_A 86 ELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVK 137 (290)
T ss_dssp ECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCS
T ss_pred ehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCC
Confidence 999977 7776541 12345899999999999999999999 66 99999996
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.7e-14 Score=145.30 Aligned_cols=111 Identities=19% Similarity=0.137 Sum_probs=92.2
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCC-----CCc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHT-----DND 543 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~-----~~~ 543 (599)
++|...+.||+|+||.||+|.. .+|+.||||++..... ....+.+|+.+ .++||| ... +..
T Consensus 26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 105 (432)
T 3n9x_A 26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDEL 105 (432)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeE
Confidence 4577778899999999999985 4688999999975422 24678899998 999999 112 568
Q ss_pred ceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|||||++. .+++.. ...+++.++..++.||++||+||| ..+|+|||||
T Consensus 106 ~lv~e~~~~~L~~~~~~---~~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlk 156 (432)
T 3n9x_A 106 YIVLEIADSDLKKLFKT---PIFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLK 156 (432)
T ss_dssp EEEEECCSEEHHHHHHS---SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EEEEecCCcCHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCC
Confidence 9999999977 888874 235899999999999999999999 7799999996
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-14 Score=137.98 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=91.9
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc-----hhhHHHHHHhhc--cccccC----------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE-----TEELAFLETSST--DFRHYN----------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~-----~~~~~f~~e~~~--~l~H~n----------~~~~~~~ 544 (599)
++|.....||+|+||.||++.. .+|+.||||.+.... .....+.+|+.+ .++||| ...+..+
T Consensus 5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 84 (305)
T 2wtk_C 5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMY 84 (305)
T ss_dssp CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEE
T ss_pred cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEE
Confidence 4577778899999999999996 468999999996542 124678899988 999999 2345679
Q ss_pred eeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++.... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 85 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlk 136 (305)
T 2wtk_C 85 MVMEYCVCGMQEMLDSVP-EKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIK 136 (305)
T ss_dssp EEEECCSEEHHHHHHHST-TCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEehhccCCHHHHHHhCc-ccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence 999999999 77776432 345899999999999999999999 7799999986
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-14 Score=143.31 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=90.0
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|...+.||+|+||.||+|... +|+.||||++...... ...+.+|+.+ .++||| ...+..++||||+
T Consensus 3 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 82 (324)
T 3mtl_A 3 TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYL 82 (324)
T ss_dssp SEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred ceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEeccc
Confidence 4666778999999999999964 7899999999754332 2245567777 999999 4677789999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++ .+++.... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 83 ~~~l~~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dik 127 (324)
T 3mtl_A 83 DKDLKQYLDDCG--NIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLK 127 (324)
T ss_dssp SEEHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCC
T ss_pred ccCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcC
Confidence 977 88887532 35899999999999999999999 7899999996
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-14 Score=141.68 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=93.7
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
++|.....||+|+||.||+|... +|+.||+|++...... ...+.+|+.+ .++||| ...+..++||||
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 112 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 112 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence 45777788999999999999964 6899999999765322 4678899988 899999 456778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCc-cccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYR-KSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~-~i~Hrdl~ 599 (599)
+++| .+++... ..+++.....++.||++||+||| .. +|+||||+
T Consensus 113 ~~~~~L~~~l~~~---~~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlk 159 (360)
T 3eqc_A 113 MDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVK 159 (360)
T ss_dssp CTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCS
T ss_pred CCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCcc
Confidence 9999 8888742 24899999999999999999999 54 89999996
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-14 Score=139.21 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=80.7
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
.++|...+.||+|+||.||+|.. .+|+.||||++..... ...++.+|+.+ +++||| ...+..++|||
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 93 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMK 93 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEE
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEeh
Confidence 34677778899999999999985 4689999999865432 24568889888 999999 45677899999
Q ss_pred ccccc--cccccC-----CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSA-----PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~-----~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.. ......+++.++..++.||++||+||| ..+|+||||+
T Consensus 94 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~ 148 (303)
T 2vwi_A 94 LLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVK 148 (303)
T ss_dssp CCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCS
T ss_pred hccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCC
Confidence 99999 777763 112345899999999999999999999 7799999986
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-14 Score=149.25 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=90.7
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch--------------hhHHHHHHhhc--cccccC-------
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET--------------EELAFLETSST--DFRHYN------- 537 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~--------------~~~~f~~e~~~--~l~H~n------- 537 (599)
.+.|...+.||+|+||.||+|... +++.||||.+..... ....+.+|+.+ +++|||
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 356777788999999999999964 688999999865421 13568889988 999999
Q ss_pred -CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 -SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 -~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+..++||||+++| .+++..+ ..+++.++..|+.||+.||+||| ..+|+||||+
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlk 173 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIINR---HKFDECDAANIMKQILSGICYLH---KHNIVHRDIK 173 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCc
Confidence 4667789999999999 7777642 34899999999999999999999 7899999996
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.46 E-value=7.5e-14 Score=141.04 Aligned_cols=116 Identities=14% Similarity=0.071 Sum_probs=95.0
Q ss_pred HHHHhhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch-----h----hHHHHHHhhc--cc-cccC-------
Q 007553 478 MIQATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET-----E----ELAFLETSST--DF-RHYN------- 537 (599)
Q Consensus 478 l~~at~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~-----~----~~~f~~e~~~--~l-~H~n------- 537 (599)
.....++|.....||+|+||.||+|... +|+.||||++..... . ...+.+|+.+ ++ +|||
T Consensus 89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 168 (365)
T 2y7j_A 89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS 168 (365)
T ss_dssp HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 3444567888889999999999999974 799999999865431 1 2457778887 77 8999
Q ss_pred -CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 -SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 -~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...+..++||||+++| .+++..+ ..+++..+..++.||++||+||| ..+|+||||+
T Consensus 169 ~~~~~~~~lv~e~~~g~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlk 227 (365)
T 2y7j_A 169 YESSSFMFLVFDLMRKGELFDYLTEK---VALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLK 227 (365)
T ss_dssp EEBSSEEEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EeeCCEEEEEEEeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 3567789999999999 8888742 34899999999999999999999 6799999986
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-14 Score=144.64 Aligned_cols=103 Identities=12% Similarity=-0.042 Sum_probs=83.8
Q ss_pred ceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc---cccccC------------CCCCCcceeeccccc
Q 007553 489 YCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST---DFRHYN------------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~---~l~H~n------------~~~~~~~lv~e~~~~ 552 (599)
..||+|+||.||+|.. .+|+.||||++... ..+.+|+.+ ..+||| ...+.+++|||||++
T Consensus 68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~g 143 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDG 143 (400)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCS
T ss_pred ceeeeccCeEEEEEEECCCCCEEEEEEeCcc----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCC
Confidence 5799999999999986 46899999999643 335566665 568999 124568999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++..+. ...++|.++..|+.||++||+||| ..+|+||||+
T Consensus 144 g~L~~~l~~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlk 188 (400)
T 1nxk_A 144 GELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVK 188 (400)
T ss_dssp EEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred CcHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcC
Confidence 9 88887532 345899999999999999999999 7899999996
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-14 Score=137.32 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=92.2
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC----------CCCCCcce
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE---TEELAFLETSST--DFRHYN----------SHTDNDDS 545 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n----------~~~~~~~l 545 (599)
.++|.....||+|+||.||+|... +|+.||+|.+.... .....+.+|+.+ +++||| ...+..++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 356777788999999999999964 68999999997543 224678889988 999999 13456899
Q ss_pred eecccccc--cccccCCC-CCCCCChHHHHHHHHHHHHHHhhhhCCC--CccccccccC
Q 007553 546 SDEHLANN--EHFLSAPE-NYERVDFSPDFSIADQSKKGFKLLADRK--YRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~-~~~~l~~~~~~~ia~~ia~gl~yLH~~~--~~~i~Hrdl~ 599 (599)
||||+++| .+++.... ....+++.++..++.||++||+|||+.. ..+|+||||+
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~ 143 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLK 143 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCS
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccc
Confidence 99999999 88887522 2345899999999999999999999322 1239999986
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-14 Score=137.56 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=92.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
++|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+|+.+ +++||| ...+..++|||
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 85 (284)
T 3kk8_A 6 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD 85 (284)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEe
Confidence 4577778899999999999986 468999999986543 224568889888 999999 45667799999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++..+ ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 86 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dik 132 (284)
T 3kk8_A 86 LVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCH---SNGIVHRNLK 132 (284)
T ss_dssp CCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred cCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCC
Confidence 99999 6677642 34899999999999999999999 7899999986
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-14 Score=146.66 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=93.8
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
+.|...+.||+|+||.||+|... +|+.||||++.... .....+.+|+.+ +++||| ...+..++||
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 105 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG 105 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 45777788999999999999964 78999999986532 225678899998 999999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+ ..+++.++..|+.||++||+||| ..+|+||||+
T Consensus 106 e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlk 153 (484)
T 3nyv_A 106 EVYTGGELFDEIISR---KRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLK 153 (484)
T ss_dssp CCCCSCBHHHHHHTC---SCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred ecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCC
Confidence 999999 7777642 34899999999999999999999 7799999996
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-14 Score=138.42 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=91.6
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+.|.....||+|+||.||++... +|+.||||.+..... ....+.+|+.+ .++||| ...+..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 88 (304)
T 2jam_A 9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLV 88 (304)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcC
Confidence 46777788999999999999964 799999999976543 24568889988 999999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 89 ~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dik 133 (304)
T 2jam_A 89 SGGELFDRILER---GVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLK 133 (304)
T ss_dssp CSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCC
T ss_pred CCccHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 999 7777642 24899999999999999999999 7799999986
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.7e-14 Score=151.36 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=93.8
Q ss_pred hhhccccceecccCCceEEEEEeC----CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC-------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS----SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN-------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------~~~~~~~lv 546 (599)
.++|...+.||+|+||.||+|... .+..||||++...... ...|.+|+.+ +++||| ...+..++|
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~lv 468 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWII 468 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEE
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCceEEE
Confidence 355666788999999999999863 2457999998764332 4678999988 999999 456678999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .++++.+. ..++|.++..++.||++||+||| ..+|+||||+
T Consensus 469 ~E~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDik 518 (656)
T 2j0j_A 469 MELCTLGELRSFLQVRK--FSLDLASLILYAYQLSTALAYLE---SKRFVHRDIA 518 (656)
T ss_dssp EECCTTCBHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred EEcCCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCccccccc
Confidence 9999999 88887532 34899999999999999999999 7799999996
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-14 Score=143.92 Aligned_cols=120 Identities=17% Similarity=0.221 Sum_probs=98.6
Q ss_pred HHHHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC--------CC----
Q 007553 476 EEMIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DF-RHYN--------SH---- 539 (599)
Q Consensus 476 ~~l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n--------~~---- 539 (599)
.++....+.|...+.||+|+||.||+|.. .+|+.||||.+.........+.+|+.+ ++ +||| ..
T Consensus 17 ~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~ 96 (326)
T 2x7f_A 17 SALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP 96 (326)
T ss_dssp CCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--
T ss_pred hhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCc
Confidence 34444567788888999999999999996 478999999997765556778889887 66 8999 11
Q ss_pred --CCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 540 --TDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 540 --~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+..++||||+++| .+++.... ...+++.....++.||+.||+||| ..+|+||||+
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlk 156 (326)
T 2x7f_A 97 GMDDQLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIK 156 (326)
T ss_dssp CCCCEEEEEEECCTTEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCS
T ss_pred cccceEEEEEEcCCCCcHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCc
Confidence 46789999999999 88887532 235889999999999999999999 7799999986
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-14 Score=140.74 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=90.4
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCch---hhHHHHHHhhc--cccc--cC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET---EELAFLETSST--DFRH--YN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H--~n--------~~~~~~~lv~e 548 (599)
.|...+.||+|+||.||++...+++.||||++..... ....|.+|+.+ .++| || ...+..++|||
T Consensus 10 ~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e 89 (343)
T 3dbq_A 10 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME 89 (343)
T ss_dssp EEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC
T ss_pred EEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEe
Confidence 4666788999999999999988899999999865432 24678889988 7877 77 46677899999
Q ss_pred ccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|..+. .+++..+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 90 ~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDik 135 (343)
T 3dbq_A 90 CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLK 135 (343)
T ss_dssp CCSEEHHHHHHHS---CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred CCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 64433 8888753 35899999999999999999999 7899999996
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-14 Score=137.61 Aligned_cols=112 Identities=19% Similarity=0.227 Sum_probs=91.2
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC---------CCCCCcceeeccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN---------SHTDNDDSSDEHL 550 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n---------~~~~~~~lv~e~~ 550 (599)
.++|.....||+|+||.||+|.. .|+.||||.+.... ....|.+|+.+ +++||| ...+..++||||+
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~ 97 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 97 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC---HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh-HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecC
Confidence 35677778899999999999997 48999999997543 34678899988 999999 2334689999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++.... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 98 ~~~~L~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk 144 (278)
T 1byg_A 98 AKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLA 144 (278)
T ss_dssp TTEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred CCCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCC
Confidence 999 88887421 223789999999999999999999 7899999986
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.6e-14 Score=140.39 Aligned_cols=112 Identities=18% Similarity=0.211 Sum_probs=91.6
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CC--------C
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SH--------T 540 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~--------~ 540 (599)
++|...+.||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ .++||| .. .
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 4677778899999999999996 57899999998654322 4578889988 899999 11 4
Q ss_pred CCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+..++||||++++ .+++.... ..+++.++..|+.||++||+||| ..+|+||||+
T Consensus 97 ~~~~lv~e~~~~~l~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlk 151 (351)
T 3mi9_A 97 GSIYLVFDFCEHDLAGLLSNVL--VKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMK 151 (351)
T ss_dssp CEEEEEEECCSEEHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred ceEEEEEeccCCCHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCC
Confidence 4679999999988 66666432 34899999999999999999999 7899999996
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-14 Score=142.87 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=83.3
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--ccc-ccC----------CCCCCcc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFR-HYN----------SHTDNDD 544 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~-H~n----------~~~~~~~ 544 (599)
.++|.....||+|+||.||+|.. .+|+.||||++.... .....+.+|+.+ .+. ||| ......+
T Consensus 8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~ 87 (388)
T 3oz6_A 8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVY 87 (388)
T ss_dssp HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEE
T ss_pred cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEE
Confidence 45677778899999999999985 579999999986432 224567788887 776 999 1334689
Q ss_pred eeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|||||+++ .+++... .+++..+..++.||++||+||| ..+|+||||+
T Consensus 88 lv~e~~~~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlk 136 (388)
T 3oz6_A 88 LVFDYMETDLHAVIRAN----ILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMK 136 (388)
T ss_dssp EEEECCSEEHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EEecccCcCHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCC
Confidence 999999977 8888742 4899999999999999999999 7899999996
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-14 Score=136.98 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=89.6
Q ss_pred hhccccc-eecccCCceEEEEEe---CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC-------CCCCCccee
Q 007553 483 EDFHIKY-CIGTGGYGSVYRAQL---SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN-------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~-~lg~g~~g~v~~~~~---~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n-------~~~~~~~lv 546 (599)
..|.... .||+|+||.||+|.. .+++.||||++...... ..+|.+|+.+ .++||| ...+..++|
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv 95 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLV 95 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEE
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCcEEE
Confidence 3455455 899999999999964 34688999999764322 4678899988 999999 456778999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 96 ~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dik 144 (291)
T 1xbb_A 96 MEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLA 144 (291)
T ss_dssp EECCTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEeCCCCCHHHHHHhC---cCCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCC
Confidence 9999999 8888752 34899999999999999999999 7799999986
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-14 Score=139.44 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=91.4
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
++|.....||+|+||.||+|... +|+.||||++...... ...+.+|+.+ .++||| ...+..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 104 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE 104 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence 45667788999999999999964 5899999998654322 4567889888 999999 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.. ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 105 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlk 151 (331)
T 4aaa_A 105 FVDHTILDDLELF---PNGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIK 151 (331)
T ss_dssp CCSEEHHHHHHHS---TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred cCCcchHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcC
Confidence 99999 555442 234899999999999999999999 7899999996
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-14 Score=138.10 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=92.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+|+.+ +++||| ...+..++||
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 111 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 111 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence 4577788899999999999995 579999999997532 224678889988 999999 4567889999
Q ss_pred cccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... .....+++.++..++.||++||+||| ..+|+||||+
T Consensus 112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~ 163 (310)
T 2wqm_A 112 ELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIK 163 (310)
T ss_dssp ECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred ecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCc
Confidence 999999 7777641 12345899999999999999999999 7899999986
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-14 Score=142.95 Aligned_cols=119 Identities=15% Similarity=0.079 Sum_probs=93.6
Q ss_pred HHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc------hhhHHHHHHhhc--cccccC--------CCC
Q 007553 478 MIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE------TEELAFLETSST--DFRHYN--------SHT 540 (599)
Q Consensus 478 l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~------~~~~~f~~e~~~--~l~H~n--------~~~ 540 (599)
+....++|...+.||+|+||.||+|.. .+++.||+|.+.... .....+.+|+.+ .++||| ...
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 344566788889999999999999986 468899999986432 224678899998 999999 456
Q ss_pred CCcceeecccccc--cccccCCC-------------------------------------CCCCCChHHHHHHHHHHHHH
Q 007553 541 DNDDSSDEHLANN--EHFLSAPE-------------------------------------NYERVDFSPDFSIADQSKKG 581 (599)
Q Consensus 541 ~~~~lv~e~~~~G--~~~l~~~~-------------------------------------~~~~l~~~~~~~ia~~ia~g 581 (599)
+..++||||+++| .+++.... ....+++.....|+.||++|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 7789999999999 77774200 01123566788899999999
Q ss_pred HhhhhCCCCccccccccC
Q 007553 582 FKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 582 l~yLH~~~~~~i~Hrdl~ 599 (599)
|+||| ..+|+||||+
T Consensus 181 l~~LH---~~~ivH~Dlk 195 (345)
T 3hko_A 181 LHYLH---NQGICHRDIK 195 (345)
T ss_dssp HHHHH---HTTEECCCCC
T ss_pred HHHHH---HCCccccCCC
Confidence 99999 7799999996
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-14 Score=144.50 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=91.2
Q ss_pred hhhccccceecccCCceEEEEEe----CCCCEEEEEEecCCc-----hhhHHHHHHhhc--cc-cccC--------CCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL----SSGRVVALKKLHRSE-----TEELAFLETSST--DF-RHYN--------SHTD 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~----~~g~~vavK~l~~~~-----~~~~~f~~e~~~--~l-~H~n--------~~~~ 541 (599)
.++|...+.||+|+||.||++.. .+|+.||||++.... .....+.+|+.+ .+ +||| ...+
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 35677788999999999999986 368999999986532 113446667776 67 6999 3567
Q ss_pred Ccceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++| .+++..+ ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlk 186 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQR---ERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIK 186 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred eEEEEeecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 789999999999 8888743 24899999999999999999999 7799999996
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-14 Score=136.61 Aligned_cols=111 Identities=23% Similarity=0.251 Sum_probs=93.0
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|.....||+|+||.||+|... +++.||||.+...... ...+.+|+++ .++||| ...+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 46777788999999999999964 5789999998653221 3568889988 999999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 94 e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~ 141 (284)
T 2vgo_A 94 EFAPRGELYKELQKH---GRFDEQRSATFMEELADALHYCH---ERKVIHRDIK 141 (284)
T ss_dssp CCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCS
T ss_pred EeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCC
Confidence 999999 7888743 24899999999999999999999 7899999985
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.4e-14 Score=138.99 Aligned_cols=114 Identities=18% Similarity=0.290 Sum_probs=91.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCE--EEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRV--VALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~--vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv 546 (599)
++|.....||+|+||.||+|.. .+|.. ||||++..... ....+.+|+++ ++ +||| ...+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 4577778899999999999985 35654 49999875432 24568889988 88 9999 456778999
Q ss_pred ecccccc--cccccCCC-------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPE-------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++.... ....+++.++..++.||++||+||| ..+|+||||+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlk 169 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLA 169 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCc
Confidence 9999999 88887532 2246899999999999999999999 7899999996
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-14 Score=147.84 Aligned_cols=111 Identities=17% Similarity=0.129 Sum_probs=89.5
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+.|...+.||+|+||.||+|... +++.||||.+..... ....+.+|+.+ .++||| ...+..++|||
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 116 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME 116 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence 45777788999999999999964 689999999976432 24678899998 999999 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++..+ ..+++.++..|+.||++||+||| ..+|+||||+
T Consensus 117 ~~~~g~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlk 163 (494)
T 3lij_A 117 CYKGGELFDEIIHR---MKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLK 163 (494)
T ss_dssp CCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred cCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCC
Confidence 99999 6677642 34899999999999999999999 7899999996
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-13 Score=137.09 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=88.4
Q ss_pred HhhhccccceecccCCceEEEEEeC----CCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCC---
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLS----SGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHT--- 540 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~--- 540 (599)
..++|.....||+|+||.||+|... .++.||||++.... .....|.+|+.+ +++||| ...
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 111 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ 111 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence 3456777788999999999999853 34589999987542 224678899988 999999 111
Q ss_pred --CCcceeecccccc--cccccCC---CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 --DNDDSSDEHLANN--EHFLSAP---ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 --~~~~lv~e~~~~G--~~~l~~~---~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...++||||+++| .+++... .....+++.++..++.||++||+||| ..+|+||||+
T Consensus 112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dik 174 (313)
T 3brb_A 112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLA 174 (313)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCS
T ss_pred CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 2358999999999 7777421 23356899999999999999999999 7899999996
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.44 E-value=8.8e-14 Score=135.89 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=88.7
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC------------CCCCCccee
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN------------SHTDNDDSS 546 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n------------~~~~~~~lv 546 (599)
|.....||+|+||.||+|.. .++..||+|.+.... .....+.+|+.+ .++||| ......++|
T Consensus 28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv 107 (290)
T 1t4h_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence 44456799999999999986 468899999986542 224678889988 999999 123557999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++... ..+++.++..++.||++||+|||+. .++|+||||+
T Consensus 108 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~-~~~i~H~dik 158 (290)
T 1t4h_A 108 TELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLK 158 (290)
T ss_dssp EECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCC
T ss_pred EEecCCCCHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHcC-CCCEEECCCC
Confidence 9999999 8888742 3489999999999999999999932 2349999996
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-14 Score=135.70 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=93.0
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|.....||+|+||.||+|... +|+.||||.+...... ...+.+|+.+ .++||| ...+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM 90 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence 35666788999999999999964 7999999998654321 3568888887 999999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 91 e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~ 138 (276)
T 2h6d_A 91 EYVSGGELFDYICKH---GRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLK 138 (276)
T ss_dssp ECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCC
T ss_pred eccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCC
Confidence 999998 8888743 24899999999999999999999 7899999986
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-13 Score=139.65 Aligned_cols=110 Identities=23% Similarity=0.300 Sum_probs=91.8
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------C-----CCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------S-----HTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~-----~~~~~~ 544 (599)
++|.....||+|+||.||+|... +|+.||||++...... ...+.+|+.+ .++||| . .....+
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 90 (353)
T 2b9h_A 11 SDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVY 90 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEE
T ss_pred cceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEE
Confidence 46777788999999999999964 6899999999754332 4568889988 999999 1 126679
Q ss_pred eeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++. .+++..+ .+++.++..++.||++||+||| ..+|+||||+
T Consensus 91 lv~e~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlk 139 (353)
T 2b9h_A 91 IIQELMQTDLHRVISTQ----MLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLK 139 (353)
T ss_dssp EEECCCSEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred EEEeccCccHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 999999976 7777742 4899999999999999999999 7899999996
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-14 Score=138.50 Aligned_cols=112 Identities=17% Similarity=0.279 Sum_probs=90.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCC----EEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGR----VVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~----~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv 546 (599)
++|...+.||+|+||.||+|.. .+|+ .||+|.+..... ...++.+|+.+ .++||| ...+..++|
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~v 94 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI 94 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEEE
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceEE
Confidence 4577778899999999999995 3454 358888755432 25678899988 999999 234568899
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||+++| .+++.... ..+++.+++.|+.||++||+||| ..+|+||||+
T Consensus 95 ~~~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik 144 (327)
T 3lzb_A 95 TQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLA 144 (327)
T ss_dssp ECCCSSCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCC
Confidence 9999999 88887533 34899999999999999999999 7899999996
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=137.28 Aligned_cols=107 Identities=16% Similarity=0.027 Sum_probs=88.5
Q ss_pred ceecccCCceEEEEEeC-CCCEEEEEEecCCchh---hHHHHHHhhc--cc-cccC--------CCCCCcceeecccccc
Q 007553 489 YCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE---ELAFLETSST--DF-RHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~---~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~e~~~~G 553 (599)
+.||+|+||.||+|... +|+.||||.+...... ..++.+|+.+ .+ +||| ...+..++||||+++|
T Consensus 35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~ 114 (327)
T 3lm5_A 35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGG 114 (327)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTE
T ss_pred ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCC
Confidence 77999999999999864 6899999998764322 4678888887 55 5698 4567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ....+++.++..++.||++||+||| ..+|+||||+
T Consensus 115 ~L~~~~~~~-~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dik 158 (327)
T 3lm5_A 115 EIFSLCLPE-LAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLK 158 (327)
T ss_dssp EGGGGGSSC-C-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred cHHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCC
Confidence 7777643 2345899999999999999999999 7899999996
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-13 Score=119.48 Aligned_cols=105 Identities=30% Similarity=0.386 Sum_probs=70.8
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecc
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 126 (599)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++.+..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 5555443 66777777777777666666777777777777777776555555666777777777777
Q ss_pred cccccCCccccCCCcccEEecccCccCC
Q 007553 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTG 154 (599)
Q Consensus 127 ~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 154 (599)
.+.+..++.+.++++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7765555556667777777777776653
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=137.31 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=92.4
Q ss_pred HHhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc----cccccC--------CCC----CCc
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST----DFRHYN--------SHT----DND 543 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~----~l~H~n--------~~~----~~~ 543 (599)
...++|.....||+|+||.||+|.. +|+.||||++.... ...+.+|+++ .++||| ... ...
T Consensus 39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~--~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~ 115 (342)
T 1b6c_B 39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE--ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL 115 (342)
T ss_dssp HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGG--HHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCE
T ss_pred cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchh--HHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcccee
Confidence 3456788888999999999999998 59999999996532 3456677776 389999 122 268
Q ss_pred ceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCC-----CccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRK-----YRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~-----~~~i~Hrdl~ 599 (599)
++||||+++| .+++... .++|.++..++.|||+||+|||... ..+|+||||+
T Consensus 116 ~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlk 174 (342)
T 1b6c_B 116 WLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLK 174 (342)
T ss_dssp EEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCS
T ss_pred EEEEeecCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCC
Confidence 9999999999 8888743 3899999999999999999999432 6899999996
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-14 Score=147.77 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=93.3
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
+.|.....||+|+||.||+|... +|+.||||++.... .....+.+|+.+ +++||| ...+..++|||
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 101 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE 101 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence 45777788999999999999964 78999999986432 224678899998 999999 45677899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++..+ ..+++.++..|+.||++||+||| ..+|+||||+
T Consensus 102 ~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlk 148 (486)
T 3mwu_A 102 LYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLK 148 (486)
T ss_dssp CCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred cCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCc
Confidence 99999 6666642 34899999999999999999999 7899999996
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-14 Score=141.03 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=92.3
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---------hhHHHHHHhhc--cccccC--------CCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---------EELAFLETSST--DFRHYN--------SHTD 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---------~~~~f~~e~~~--~l~H~n--------~~~~ 541 (599)
.++|.....||+|+||.||+|.. .+|+.||||++..... ....+.+|+.+ +++||| ...+
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~ 102 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG 102 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence 45677788999999999999984 5789999999976431 12356678887 899999 4567
Q ss_pred Ccceeecccccc---cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN---EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G---~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+.+| .+++... ..+++..+..|+.||++||+||| ..+|+||||+
T Consensus 103 ~~~lv~e~~~~g~~l~~~~~~~---~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlk 157 (335)
T 3dls_A 103 FFQLVMEKHGSGLDLFAFIDRH---PRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIK 157 (335)
T ss_dssp EEEEEEECCTTSCBHHHHHHTC---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEEEEEEeCCCCccHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccC
Confidence 789999999888 6677642 34899999999999999999999 7799999996
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=136.63 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=85.6
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh-hHHHHHHhhc--cccccC-------C--------------
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE-ELAFLETSST--DFRHYN-------S-------------- 538 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n-------~-------------- 538 (599)
.|...+.||+|+||.||+|... +|+.||||++...... ..++.+|+.+ +++||| .
T Consensus 12 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~ 91 (320)
T 2i6l_A 12 RYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSL 91 (320)
T ss_dssp TEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----C
T ss_pred ceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccc
Confidence 4666778999999999999975 5899999999765433 5678899988 999999 0
Q ss_pred -CCCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 -HTDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 -~~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..+..++||||+++. .+++.. ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 92 ~~~~~~~lv~e~~~~~L~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk 147 (320)
T 2i6l_A 92 TELNSVYIVQEYMETDLANVLEQ----GPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLK 147 (320)
T ss_dssp CSCSEEEEEEECCSEEHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCS
T ss_pred cccCceeEEeeccCCCHHHHhhc----CCccHHHHHHHHHHHHHHHHHHH---hCCEecCCCC
Confidence 124568999999955 888864 24889999999999999999999 7899999996
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.3e-14 Score=143.29 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=87.6
Q ss_pred HHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC---------CC--------
Q 007553 480 QATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN---------SH-------- 539 (599)
Q Consensus 480 ~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n---------~~-------- 539 (599)
...++|...+.||+|+||.||+|.. .+|+.||||++...... ..+|+.+ .++||| ..
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~---~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~ 80 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY---KNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPP 80 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS---CCHHHHHHTTCCCTTBCCEEEEEEEC--------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch---HHHHHHHHHHcCCCCccchhheeeecCccccccc
Confidence 3456788888999999999999985 57999999998654322 2357777 899999 11
Q ss_pred -----------------------------CCCcceeecccccc-cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCC
Q 007553 540 -----------------------------TDNDDSSDEHLANN-EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADR 588 (599)
Q Consensus 540 -----------------------------~~~~~lv~e~~~~G-~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~ 588 (599)
....++||||++++ .+++... .....+++.....++.||++||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH-- 158 (383)
T 3eb0_A 81 QPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH-- 158 (383)
T ss_dssp -----------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred ccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH--
Confidence 11267999999977 6666531 12345899999999999999999999
Q ss_pred CCccccccccC
Q 007553 589 KYRKSYYQRLY 599 (599)
Q Consensus 589 ~~~~i~Hrdl~ 599 (599)
..+|+||||+
T Consensus 159 -~~gi~H~Dik 168 (383)
T 3eb0_A 159 -SLGICHRDIK 168 (383)
T ss_dssp -TTTEECSCCC
T ss_pred -HCcCccCccC
Confidence 7899999996
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-14 Score=137.03 Aligned_cols=111 Identities=21% Similarity=0.288 Sum_probs=91.2
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------C-------------
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN-------S------------- 538 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~------------- 538 (599)
..+|...+.||+|+||.||+|... +|+.||||++.... ..+.+|+.+ +++||| .
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 86 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKN 86 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS---GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-------
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc---HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccc
Confidence 346777888999999999999975 79999999997643 345678877 899999 1
Q ss_pred ----CCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 ----HTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 ----~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.....++||||+++| .+++.... ...+++..+..++.||++||+||| ..+|+||||+
T Consensus 87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlk 149 (284)
T 2a19_B 87 SSRSKTKCLFIQMEFCDKGTLEQWIEKRR-GEKLDKVLALELFEQITKGVDYIH---SKKLINRDLK 149 (284)
T ss_dssp --CCEEEEEEEEECCCCSCBHHHHHHHGG-GSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred ccccCcceEEEEEeccCCCCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCC
Confidence 023478999999999 88887432 235899999999999999999999 7799999986
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.8e-14 Score=139.29 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=92.3
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||++... +++.||+|.+.... .....+.+|+.+ .++||| ...+..++||
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 120 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 120 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 45666788999999999999964 58899999986542 224568889988 999999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 121 e~~~~~~L~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlk 168 (335)
T 2owb_A 121 ELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLK 168 (335)
T ss_dssp CCCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred ecCCCCCHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCC
Confidence 999999 7776642 34899999999999999999999 7799999986
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.9e-14 Score=137.54 Aligned_cols=112 Identities=14% Similarity=0.173 Sum_probs=94.0
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv 546 (599)
.++|...+.||+|+||.||+|... +++.||||.+...... ...+.+|+.+ +++||| ...+..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 356777888999999999999964 6889999999754322 3568889888 999999 456778999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .+++... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 113 ~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlk 161 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQ---GPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVK 161 (309)
T ss_dssp EECCCCEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EEecCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCC
Confidence 9999999 8888742 35899999999999999999999 7899999986
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.9e-14 Score=138.97 Aligned_cols=113 Identities=23% Similarity=0.261 Sum_probs=90.1
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--ccc-ccC-------C---------CCCC
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFR-HYN-------S---------HTDN 542 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~-H~n-------~---------~~~~ 542 (599)
+|...+.||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ ++. ||| . ....
T Consensus 29 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~ 108 (337)
T 3ll6_A 29 RLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAE 108 (337)
T ss_dssp EEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEE
T ss_pred eEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCce
Confidence 566778899999999999995 47899999998655433 5678888887 775 999 1 1223
Q ss_pred cceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcc--ccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRK--SYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~--i~Hrdl~ 599 (599)
.++||||+++. .+++........++|.++..|+.||++||+||| ..+ |+||||+
T Consensus 109 ~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dik 165 (337)
T 3ll6_A 109 FLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLK 165 (337)
T ss_dssp EEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCC
T ss_pred EEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCC
Confidence 68999999866 788865333346999999999999999999999 555 9999996
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=136.98 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=89.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--ccc-ccC----------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFR-HYN----------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~-H~n----------~~~~~~~lv~e 548 (599)
++|...+.||+|+||.||+|.. .+|+.||||.+.... ...+.+|+.+ .++ ||| ......++|||
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e 113 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFE 113 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC--HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc--hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEe
Confidence 4577778899999999999985 578999999997543 3567889888 786 999 12566799999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++.. +++.++..++.||++||+||| ..+|+||||+
T Consensus 114 ~~~~~~l~~~~~~------~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dik 157 (330)
T 3nsz_A 114 HVNNTDFKQLYQT------LTDYDIRFYMYEILKALDYCH---SMGIMHRDVK 157 (330)
T ss_dssp CCCCCCHHHHGGG------CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred ccCchhHHHHHHh------CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCC
Confidence 99999 666652 889999999999999999999 7899999996
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-14 Score=141.88 Aligned_cols=112 Identities=12% Similarity=0.155 Sum_probs=85.1
Q ss_pred hhhccccceecccCCceEEEEEeCC------CCEEEEEEecCCchh---h---------HHHHHHhhc--cccccC----
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSS------GRVVALKKLHRSETE---E---------LAFLETSST--DFRHYN---- 537 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~------g~~vavK~l~~~~~~---~---------~~f~~e~~~--~l~H~n---- 537 (599)
.++|...+.||+|+||.||+|.... ++.||||.+...... + ..++.|+.. .++|||
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4467778889999999999998754 478999998765422 1 123333333 788999
Q ss_pred ----CC----CCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 ----SH----TDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 ----~~----~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.. ....++||||+ +| .+++... ...++|.+++.|+.||++||+||| ..+|+||||+
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlk 179 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN--AKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIK 179 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCC
Confidence 11 24479999999 77 8888753 245999999999999999999999 7799999996
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=151.60 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=87.7
Q ss_pred hhccccceecccCCceEEEEEeC--CCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------CCCCC-----c
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS--SGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------SHTDN-----D 543 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~--~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~~~~~-----~ 543 (599)
+.|.....||+|+||.||+|... +|+.||||++..... ....|.+|+.+ +++||| ...+. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 45777788999999999999864 589999999865432 24568899988 999999 12222 5
Q ss_pred ceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|||||++| .+++.. .++|.+++.|+.||++||+||| ..+|+|||||
T Consensus 160 ~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlk 209 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLK 209 (681)
T ss_dssp EEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred EEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccC
Confidence 9999999999 666653 4899999999999999999999 7899999996
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=140.00 Aligned_cols=109 Identities=18% Similarity=0.148 Sum_probs=82.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCC------CC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHT------DN 542 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~------~~ 542 (599)
+.|.....||+|+||.||+|.. .+|+.||||++..... ....+.+|+.+ .++||| ... ..
T Consensus 25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~ 104 (367)
T 1cm8_A 25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTD 104 (367)
T ss_dssp SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCC
T ss_pred ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCce
Confidence 3466678899999999999996 5799999999955322 24568899988 999999 111 34
Q ss_pred cceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||| +| .+++... .+++.+...++.||++||+||| ..+|+||||+
T Consensus 105 ~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlk 155 (367)
T 1cm8_A 105 FYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLK 155 (367)
T ss_dssp CEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EEEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCcC
Confidence 69999999 44 7777642 4899999999999999999999 7899999996
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-14 Score=136.86 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=92.0
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----TEELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||++... +++.||+|.+.... .....+.+|+.+ .++||| ...+..++||
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 94 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 94 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence 35666788999999999999964 58899999986532 224568889988 999999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 95 e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~ 142 (294)
T 2rku_A 95 ELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLK 142 (294)
T ss_dssp ECCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred ecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 999999 7776632 35899999999999999999999 7799999986
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9e-14 Score=143.51 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=90.7
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cc------cccC--------CCCCCccee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DF------RHYN--------SHTDNDDSS 546 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l------~H~n--------~~~~~~~lv 546 (599)
.|...+.||+|+||.||+|.. .+++.||||++........++.+|+.+ .+ +|+| ...+..++|
T Consensus 98 ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv 177 (429)
T 3kvw_A 98 RYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMT 177 (429)
T ss_dssp TEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEE
T ss_pred cEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEE
Confidence 466778899999999999985 458999999998765445667777766 44 5566 346778999
Q ss_pred ecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||++++ .+++.... ...++|..+..|+.||++||+||| ..+|+|||||
T Consensus 178 ~e~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlK 227 (429)
T 3kvw_A 178 FELLSMNLYELIKKNK-FQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLK 227 (429)
T ss_dssp ECCCCCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCS
T ss_pred EeccCCCHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 9999877 77777532 234899999999999999999999 7899999996
|
| >2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=135.65 Aligned_cols=113 Identities=25% Similarity=0.296 Sum_probs=91.1
Q ss_pred hhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
++|.....||+|+||.||+|... +|+.||||++...... ...+.+|+.+ +++||| ...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 45777788999999999999964 6899999998654322 3578889988 999999 45677899999
Q ss_pred ccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++. .+++.... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 83 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk 130 (299)
T 2r3i_A 83 FLHQDLKKFMDASA-LTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLK 130 (299)
T ss_dssp CCSEEHHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred cccCCHHHHHHhhh-ccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCC
Confidence 99966 88887532 234889999999999999999999 7799999986
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-13 Score=139.48 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=91.3
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CC-----CCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SH-----TDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~-----~~~~~ 544 (599)
+.|.....||+|+||.||+|.. .+++.||||++...... ...+.+|+.+ +++||| .. ....+
T Consensus 27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 106 (364)
T 3qyz_A 27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVY 106 (364)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEE
T ss_pred ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEE
Confidence 4577778899999999999985 46889999999754322 4678899998 999999 11 14578
Q ss_pred eeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++. .+++... .+++.++..|+.||++||+||| ..+|+||||+
T Consensus 107 iv~e~~~~~L~~~l~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik 155 (364)
T 3qyz_A 107 IVQDLMETDLYKLLKTQ----HLSNDHICYFLYQILRGLKYIH---SANVLHRDLK 155 (364)
T ss_dssp EEEECCSEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EEEcccCcCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 999999977 8888743 3899999999999999999999 7899999996
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-13 Score=140.59 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=89.9
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCch---hhHHHHHHhhc--ccc--ccC--------CCCCCcceeec
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET---EELAFLETSST--DFR--HYN--------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~--H~n--------~~~~~~~lv~e 548 (599)
.|...+.||+|+||.||+|...+|+.||||++..... ....+.+|+.+ .++ ||| ...+..++|||
T Consensus 57 ~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E 136 (390)
T 2zmd_A 57 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME 136 (390)
T ss_dssp EEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE
T ss_pred ceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe
Confidence 4777788999999999999987799999999865432 24678899988 776 488 45667899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+| .+++... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 137 ~-~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlk 182 (390)
T 2zmd_A 137 C-GNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLK 182 (390)
T ss_dssp C-CSEEHHHHHHHC---SSCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCC
T ss_pred c-CCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence 5 455 8888753 25899999999999999999999 7899999996
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.7e-14 Score=136.14 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=89.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DF-RHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~e~~ 550 (599)
++|...+.||+|+||.||+|.. .+|+.||||.+..... ...+.+|+.+ .+ +||+ ......++||||+
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~ 88 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL 88 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc-cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec
Confidence 3567778899999999999994 5799999999865432 3446677776 55 7777 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.... ..+++.++..|+.||++||+||| ..+|+||||+
T Consensus 89 -~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlk 133 (298)
T 1csn_A 89 -GPSLEDLLDLCG--RKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIK 133 (298)
T ss_dssp -CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCC
T ss_pred -CCCHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCC
Confidence 66 88887532 34899999999999999999999 7899999996
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=141.80 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=90.5
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--ccc--------ccC------------CC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFR--------HYN------------SH 539 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~--------H~n------------~~ 539 (599)
++|...+.||+|+||.||+|.. .+|+.||||++.........+.+|+.+ .++ ||| ..
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~ 116 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVN 116 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETT
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCC
Confidence 4577778899999999999984 568999999998665545678888887 554 666 14
Q ss_pred CCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCc-cccccccC
Q 007553 540 TDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYR-KSYYQRLY 599 (599)
Q Consensus 540 ~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~-~i~Hrdl~ 599 (599)
+...++||||+.++ .+++... ....+++.++..|+.||++||+||| .. +|+|||||
T Consensus 117 ~~~~~lv~e~~~~~l~~~~~~~-~~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDik 174 (397)
T 1wak_A 117 GTHICMVFEVLGHHLLKWIIKS-NYQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIK 174 (397)
T ss_dssp EEEEEEEECCCCCBHHHHHHHT-TTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCS
T ss_pred CceEEEEEeccCccHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCC
Confidence 56789999999777 6555532 2245899999999999999999999 55 99999996
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-13 Score=134.52 Aligned_cols=112 Identities=15% Similarity=0.201 Sum_probs=94.1
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
.+.|.....||+|+||.||+|... +++.||||++..... ....+.+|+.+ +++||| ...+..++|+
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 100 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence 356777889999999999999964 689999999865432 24678899988 999999 4567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 101 e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~ 148 (287)
T 2wei_A 101 ELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLK 148 (287)
T ss_dssp CCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EccCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 999999 6777642 24899999999999999999999 7799999986
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-14 Score=142.50 Aligned_cols=114 Identities=8% Similarity=-0.059 Sum_probs=87.3
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhh---c--cccccC----C---C-----
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSS---T--DFRHYN----S---H----- 539 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~---~--~l~H~n----~---~----- 539 (599)
.++|...+.||+|+||.||+|.. .+|+.||||++.... .....|.+|+. . +++||| . .
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 34566678899999999999995 569999999996431 23467889984 3 779999 1 0
Q ss_pred ---------------CC-----Ccceeecccccc--cccccCCC----CCCCCChHHHHHHHHHHHHHHhhhhCCCCccc
Q 007553 540 ---------------TD-----NDDSSDEHLANN--EHFLSAPE----NYERVDFSPDFSIADQSKKGFKLLADRKYRKS 593 (599)
Q Consensus 540 ---------------~~-----~~~lv~e~~~~G--~~~l~~~~----~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i 593 (599)
.+ ..++||||+ +| .+++.... ....++|..+..|+.||++||+||| ..+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence 11 378999999 46 88887421 1223557889999999999999999 7799
Q ss_pred cccccC
Q 007553 594 YYQRLY 599 (599)
Q Consensus 594 ~Hrdl~ 599 (599)
+|||||
T Consensus 228 vHrDik 233 (377)
T 3byv_A 228 VHTYLR 233 (377)
T ss_dssp ECSCCC
T ss_pred ecCCCC
Confidence 999996
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-13 Score=135.81 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=90.9
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC---------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN---------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n---------~~~~~~~lv~e~~ 550 (599)
++|...+.||+|+||.||+|.. .+|+.||||++..... ..++.+|+.+ .++|++ ..++..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~ 87 (296)
T 3uzp_A 9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL 87 (296)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS-CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred cEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc-hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec
Confidence 4677788899999999999995 5799999999865432 3457788887 888887 3556679999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 88 -~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlk 132 (296)
T 3uzp_A 88 -GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVK 132 (296)
T ss_dssp -CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred -CCCHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCC
Confidence 66 88887422 34899999999999999999999 7899999996
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-11 Score=122.81 Aligned_cols=295 Identities=8% Similarity=0.081 Sum_probs=159.3
Q ss_pred CCCCCC-CCCEEeccCCcccccCCccCCCCCCCcEEEeecCc---CCccCCccccCCCcCCEEeeecccccccCCccccC
Q 007553 63 EIGSLR-DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK---LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN 138 (599)
Q Consensus 63 ~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~---~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~ 138 (599)
+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+..|. +..+....|..+.+|+.+.+..+ ++.+...++.+
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 344432 3444444433 333334444445555555444432 32223344444444444444322 22233334445
Q ss_pred CCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEe
Q 007553 139 LKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELR 218 (599)
Q Consensus 139 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 218 (599)
+.+|+.+.+..+ +.......|..+..|+.+.+..+ +...-..+|. ...|+.+.+..+... .....+..+..+....
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTIT 211 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEE
T ss_pred hcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceec
Confidence 555555554432 12122234444555555554332 2212222232 234555544432211 1223344444444444
Q ss_pred CCCCcCcccC-------------cccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCC
Q 007553 219 LSHNRLDGPI-------------PPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTN 285 (599)
Q Consensus 219 l~~n~l~~~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 285 (599)
.......... ...+.....+..+.+.. .+.......|..+..|+.+.+..+.. ......|..+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~ 289 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPA 289 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTT
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-eecCcccccccc
Confidence 3332221100 00122233444455432 23334456788999999999976543 345567888999
Q ss_pred CCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCC
Q 007553 286 LTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSK 365 (599)
Q Consensus 286 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~ 365 (599)
|+.+.+. +.+......+|.+|.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++..-..+|..+.+|+.+++.+
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 9999996 4455556678999999999999765 55455678999999999999765 6656667899999999999998
Q ss_pred CcC
Q 007553 366 NNL 368 (599)
Q Consensus 366 n~l 368 (599)
+..
T Consensus 367 ~~~ 369 (394)
T 4gt6_A 367 SRS 369 (394)
T ss_dssp CHH
T ss_pred cee
Confidence 754
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=135.75 Aligned_cols=112 Identities=14% Similarity=0.024 Sum_probs=92.7
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCc----------hhhHHHHHHhhc--ccc-ccC--------CC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSE----------TEELAFLETSST--DFR-HYN--------SH 539 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~----------~~~~~f~~e~~~--~l~-H~n--------~~ 539 (599)
.++|.....||+|+||.||+|... +|+.||||.+.... .....+.+|+.+ ++. ||| ..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 346777788999999999999964 68999999996542 113467888887 775 999 45
Q ss_pred CCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 540 TDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 540 ~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+..++||||+++| .+++..+ ..+++.+...++.||+.||+||| ..+|+||||+
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~ 151 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVICALH---KLNIVHRDLK 151 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred CCeEEEEEeccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 67789999999999 8888742 34899999999999999999999 7899999985
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-14 Score=149.65 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=94.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch--hhHHHHHHhhc--cccccC--------C------CCCCc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET--EELAFLETSST--DFRHYN--------S------HTDND 543 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n--------~------~~~~~ 543 (599)
++|.....||+|+||.||+|.. .+|+.||||++..... ....|.+|+.+ +++||| . .++..
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~ 93 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP 93 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence 5677788899999999999986 4689999999876432 24678899998 999999 1 25677
Q ss_pred ceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+++| .+++........+++..+..|+.||++||+||| ..+|+||||+
T Consensus 94 ~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLK 148 (676)
T 3qa8_A 94 LLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLK 148 (676)
T ss_dssp CCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCC
T ss_pred EEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCC
Confidence 9999999999 888886554456899999999999999999999 7899999986
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-14 Score=144.43 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=85.7
Q ss_pred hccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC-C-----------CC--CCccee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN-S-----------HT--DNDDSS 546 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-~-----------~~--~~~~lv 546 (599)
.|...+.||+|+||.||+|... +|+.||||++..... .+.+|+.+ .++||| . .. ..+++|
T Consensus 55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv 131 (420)
T 1j1b_A 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV 131 (420)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT---SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEE
T ss_pred eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch---hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEee
Confidence 4666788999999999999974 699999999865432 23357777 999999 0 11 125689
Q ss_pred ecccccc-cccccC-CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN-EHFLSA-PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G-~~~l~~-~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||++++ .+++.. ......+++.....++.||++||+||| ..+|+|||||
T Consensus 132 ~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlk 183 (420)
T 1j1b_A 132 LDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIK 183 (420)
T ss_dssp EECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCS
T ss_pred hhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 9999988 555542 112345899999999999999999999 7899999996
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.6e-14 Score=143.71 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=81.1
Q ss_pred cceecccCCceEEEEEeC---CCCEEEEEEecCCchhhHHHHHHhhc--cccccC----------CCCCCcceeeccccc
Q 007553 488 KYCIGTGGYGSVYRAQLS---SGRVVALKKLHRSETEELAFLETSST--DFRHYN----------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~---~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n----------~~~~~~~lv~e~~~~ 552 (599)
...||+|+||.||+|... +++.||||++..... ...+.+|+.+ .++||| ......++||||+++
T Consensus 26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~~ 104 (405)
T 3rgf_A 26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEH 104 (405)
T ss_dssp SCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCSE
T ss_pred CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCCC
Confidence 346999999999999965 578999999975432 3467889988 999999 235668999999998
Q ss_pred c-cccccCC------CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N-EHFLSAP------ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G-~~~l~~~------~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+ .+++... .....+++.++..|+.||+.||+||| ..+|+||||+
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlk 155 (405)
T 3rgf_A 105 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLK 155 (405)
T ss_dssp EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcC
Confidence 8 6666521 11234899999999999999999999 7899999996
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-13 Score=136.26 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=86.0
Q ss_pred hhccc-cceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhccccccC------------CCCCCcceeec
Q 007553 483 EDFHI-KYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSSTDFRHYN------------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~-~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~~l~H~n------------~~~~~~~lv~e 548 (599)
++|.. .+.||+|+||.||+|... +|+.||||++........++..+.. .++||| ......++|||
T Consensus 28 ~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~e~~~~~~-~~~h~~i~~~~~~~~~~~~~~~~~~lv~e 106 (336)
T 3fhr_A 28 DDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQ-ASGGPHIVCILDVYENMHHGKRCLLIIME 106 (336)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHHHHHHHHHHH-HTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred ceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHHHHHHHHHHH-hcCCCChHHHHHHHhhccCCCceEEEEEe
Confidence 45555 456999999999999964 6999999999764332222222111 778998 12445799999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++..+. ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 107 ~~~gg~L~~~l~~~~-~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlk 155 (336)
T 3fhr_A 107 CMEGGELFSRIQERG-DQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVK 155 (336)
T ss_dssp CCTTEEHHHHHHTC--CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred ccCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 99999 88887532 346899999999999999999999 7799999996
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-13 Score=117.58 Aligned_cols=107 Identities=27% Similarity=0.281 Sum_probs=76.6
Q ss_pred CCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecc
Q 007553 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLD 148 (599)
Q Consensus 69 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 148 (599)
..+++++++|.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|++++|++++..++.|.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567888888877 4555443 677888888888877667777777777777777777776666666777777777777
Q ss_pred cCccCCCCcccccCCCCCCeeecccccccc
Q 007553 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVG 178 (599)
Q Consensus 149 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 178 (599)
+|++++..+..|..+++|++|+|++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 777776555556677777777777776653
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-13 Score=135.94 Aligned_cols=112 Identities=18% Similarity=0.241 Sum_probs=89.2
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
.+.|.....||+|+||.||+|... +|+.||||.+.... ...++.+|+.+ .++||| ...+..++||||+
T Consensus 28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 106 (314)
T 3com_A 28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYC 106 (314)
T ss_dssp --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecC
Confidence 345777788999999999999964 58999999997643 24568889888 999999 3567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++..+ ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 107 ~~~~L~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~ 152 (314)
T 3com_A 107 GAGSVSDIIRLR--NKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIK 152 (314)
T ss_dssp TTEEHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcC
Confidence 999 8887632 234899999999999999999999 7899999985
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-13 Score=134.84 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=88.1
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch------hhHHHHHHhhc-----cccccC--------CCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET------EELAFLETSST-----DFRHYN--------SHTD 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~------~~~~f~~e~~~-----~l~H~n--------~~~~ 541 (599)
+++|.....||+|+||.||+|.. .+|+.||||++..... ....+.+|+.+ .++||| ....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~ 87 (308)
T 3g33_A 8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR 87 (308)
T ss_dssp --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence 45788788899999999999994 5789999999864221 12456677765 445999 1111
Q ss_pred -----Ccceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 -----NDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 -----~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||+++. .+++.... ...+++.++..|+.||++||+||| ..+|+||||+
T Consensus 88 ~~~~~~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlk 147 (308)
T 3g33_A 88 TDREIKVTLVFEHVDQDLRTYLDKAP-PPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLK 147 (308)
T ss_dssp SSSEEEEEEEEECCCCBHHHHHHTCC-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred CCCceeEEEEehhhhcCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 368999999977 88887533 234899999999999999999999 7789999996
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-13 Score=137.37 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=91.4
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
.++|.....||+|+||.||+|...+ .||||.+...... ...|.+|+.+ +++||| ...+..++|||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 4456777889999999999999743 4999998654322 3457788887 999999 45667899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++...+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 110 ~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlk 157 (319)
T 2y4i_B 110 LCKGRTLYSVVRDAK--IVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLK 157 (319)
T ss_dssp CCCSEEHHHHTTSSC--CCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred cccCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCC
Confidence 99999 88887532 35899999999999999999999 7799999996
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-14 Score=141.70 Aligned_cols=108 Identities=9% Similarity=0.019 Sum_probs=87.2
Q ss_pred hhccccceecccCCceEEEEEeC---------CCCEEEEEEecCCchhhHHHHHHhhc--cccccC-C------------
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS---------SGRVVALKKLHRSETEELAFLETSST--DFRHYN-S------------ 538 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~---------~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-~------------ 538 (599)
++|...+.||+|+||.||+|... +++.||||.+... ..+.+|+.+ +++||| .
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 117 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLL 117 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT----STHHHHHHHHHHHCCHHHHHHHHHHTTCTTC
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc----chHHHHHHHHHHhcccchhhhhhhhccCCcc
Confidence 45677788999999999999965 3789999998754 346778877 888988 1
Q ss_pred -----------CCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 -----------HTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 -----------~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..+..++||||+ +| .+++.... ...+++.++..|+.||++||+||| ..+|+||||+
T Consensus 118 ~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dik 186 (352)
T 2jii_A 118 AIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSP-KHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVT 186 (352)
T ss_dssp SCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCC
T ss_pred CccchhhccccCCcEEEEEecCC-CcCHHHHHHhCC-cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCC
Confidence 256789999999 77 88887531 245899999999999999999999 7799999996
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-13 Score=137.95 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=90.6
Q ss_pred hhccccceecccCCceEEEEEeC-CC-CEEEEEEecCCchhhHHHHHHhhc--cccccC--------------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SG-RVVALKKLHRSETEELAFLETSST--DFRHYN--------------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g-~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------------~~~~~~~ 544 (599)
++|.....||+|+||.||+|... ++ +.||||++.........+.+|+.+ .++|++ ...+..+
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMC 98 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEE
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEE
Confidence 45677788999999999999853 34 789999998655555677788887 777765 2356778
Q ss_pred eeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+.++ .+++.... ...+++.++..|+.||++||+||| ..+|+||||+
T Consensus 99 lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlk 150 (355)
T 2eu9_A 99 IAFELLGKNTFEFLKENN-FQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLK 150 (355)
T ss_dssp EEEECCCCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCC
T ss_pred EEEeccCCChHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 999999777 66666432 245899999999999999999999 7899999996
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-13 Score=138.09 Aligned_cols=109 Identities=22% Similarity=0.111 Sum_probs=89.8
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CCC------CC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SHT------DN 542 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~~------~~ 542 (599)
++|.....||+|+||.||+|.. .+|+.||||++.... .....+.+|+.+ .++||| ... ..
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 104 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD 104 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCE
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccc
Confidence 4577778899999999999985 468999999997532 224568889988 899999 122 25
Q ss_pred cceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||++++ .+++.. .+++.+...++.||++||+||| ..+|+||||+
T Consensus 105 ~~lv~e~~~~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlk 154 (371)
T 2xrw_A 105 VYIVMELMDANLCQVIQM-----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLK 154 (371)
T ss_dssp EEEEEECCSEEHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred eEEEEEcCCCCHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCC
Confidence 69999999988 777762 3889999999999999999999 7899999996
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-13 Score=150.01 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=91.4
Q ss_pred HhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc----hhhHHHHHHhhc--cc-cccC--------CCCCCcc
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE----TEELAFLETSST--DF-RHYN--------SHTDNDD 544 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~----~~~~~f~~e~~~--~l-~H~n--------~~~~~~~ 544 (599)
..++|.....||+|+||.||+|.. .+|+.||||++.... .....+..|..+ .+ +||+ ...+.++
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 346788888999999999999996 468899999997532 123456677776 44 7888 4567789
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .++++.. ..+++.++..++.||+.||+||| ..+|+|||||
T Consensus 419 lV~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLK 469 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLK 469 (674)
T ss_dssp EEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCC
T ss_pred EEEeCcCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCC
Confidence 999999999 7788742 24899999999999999999999 7899999997
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-13 Score=134.15 Aligned_cols=103 Identities=12% Similarity=-0.045 Sum_probs=85.1
Q ss_pred ceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc---cccccC--------C----CCCCcceeeccccc
Q 007553 489 YCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST---DFRHYN--------S----HTDNDDSSDEHLAN 552 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~---~l~H~n--------~----~~~~~~lv~e~~~~ 552 (599)
+.||+|+||.||+|.. .+|+.||||++... ..+.+|+.+ ..+||| . .....++||||+++
T Consensus 24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~ 99 (299)
T 3m2w_A 24 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDG 99 (299)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCS
T ss_pred cccccCCCeEEEEEEEcCCCcEEEEEEeccc----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCC
Confidence 6799999999999985 57899999999653 335566665 679999 1 25568999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++..+. ...+++.++..++.||+.||+||| ..+|+||||+
T Consensus 100 ~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlk 144 (299)
T 3m2w_A 100 GELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVK 144 (299)
T ss_dssp CBHHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 9 88887532 345899999999999999999999 7899999996
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-13 Score=135.36 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=87.6
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC---------CCCCCcceeecc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN---------SHTDNDDSSDEH 549 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n---------~~~~~~~lv~e~ 549 (599)
.++|...+.||+|+||.||+|.. .+|+.||||.+..... ..++.+|+.+ .++|++ ...+..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~ 86 (296)
T 4hgt_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL 86 (296)
T ss_dssp ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc-chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEc
Confidence 45677888999999999999995 5789999998755332 2346778777 888887 356677999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+ +| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 87 ~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlk 132 (296)
T 4hgt_A 87 L-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVK 132 (296)
T ss_dssp C-CCBHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred c-CCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence 9 66 78877432 34899999999999999999999 7899999996
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-13 Score=136.95 Aligned_cols=112 Identities=19% Similarity=0.149 Sum_probs=91.0
Q ss_pred hccccceecccCCceEEEEEe--CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------------CCCCCcce
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL--SSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------------SHTDNDDS 545 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~--~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------------~~~~~~~l 545 (599)
+|.....||+|+||.||+|.. .+|+.||||++.........+.+|+.+ .++|++ ...+..++
T Consensus 15 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (339)
T 1z57_A 15 RYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICI 94 (339)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEE
T ss_pred ceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEE
Confidence 566678899999999999985 368899999998765555678888887 777765 24567899
Q ss_pred eecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+.++ .+++.... ..++++.++..++.||++||+||| ..+|+||||+
T Consensus 95 v~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlk 145 (339)
T 1z57_A 95 VFELLGLSTYDFIKENG-FLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLK 145 (339)
T ss_dssp EEECCCCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EEcCCCCCHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCC
Confidence 99999544 88887532 345899999999999999999999 7899999996
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-13 Score=137.67 Aligned_cols=123 Identities=15% Similarity=0.051 Sum_probs=85.0
Q ss_pred HHHHHHhhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCC---
Q 007553 476 EEMIQATEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTD--- 541 (599)
Q Consensus 476 ~~l~~at~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~--- 541 (599)
.+.....++|...+.||+|+||.||+|.. .+|+.||||++.........+.+|+.. .++||| ...+
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~ 95 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD 95 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSC
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhcccccc
Confidence 44566678899899999999999999996 468999999986654434456666665 789999 1111
Q ss_pred ----Ccceeecccccc-cccccC-CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 ----NDDSSDEHLANN-EHFLSA-PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ----~~~lv~e~~~~G-~~~l~~-~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++||||++++ .+.+.. ......+++.....++.||+.||+||| ....+|+||||+
T Consensus 96 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH-~~~~~ivH~Dlk 158 (360)
T 3e3p_A 96 RRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLH-LPSVNVCHRDIK 158 (360)
T ss_dssp TTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHT-STTTCCBCSCCC
T ss_pred ccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHh-CCCCCeecCcCC
Confidence 168999999999 554442 122345889999999999999999999 347899999996
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-13 Score=142.70 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=89.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC---------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN---------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n---------~~~~~~~lv~e~~ 550 (599)
++|...+.||+|+||.||+|.. .+|+.||||.+..... ..++..|+++ .++|++ ...+..++||||+
T Consensus 7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~ 85 (483)
T 3sv0_A 7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK-HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL 85 (483)
T ss_dssp TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS-SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc-cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC
Confidence 4577788899999999999995 5799999998765432 2346777777 777765 4567779999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.... ..++|.+++.|+.||+.||+||| ..+|+|||||
T Consensus 86 -g~sL~~ll~~~~--~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIK 130 (483)
T 3sv0_A 86 -GPSLEDLFNFCS--RKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIK 130 (483)
T ss_dssp -CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred -CCCHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccC
Confidence 66 88887422 34999999999999999999999 7899999996
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-13 Score=136.27 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=82.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC--------CC------CCC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN--------SH------TDN 542 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n--------~~------~~~ 542 (599)
+.|.....||+|+||.||+|.. .+|+.||||++.... .....+.+|+.+ .++||| .. ...
T Consensus 29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~ 108 (367)
T 2fst_X 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND 108 (367)
T ss_dssp TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCe
Confidence 4566778899999999999984 578999999996532 224678889988 999999 11 256
Q ss_pred cceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++|+||+.+. .+++.. ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 109 ~~lv~e~~~~~L~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlk 159 (367)
T 2fst_X 109 VYLVTHLMGADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLK 159 (367)
T ss_dssp CEEEEECCCEECC---------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred EEEEecccCCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCC
Confidence 79999999433 777764 24899999999999999999999 7899999996
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=116.47 Aligned_cols=106 Identities=25% Similarity=0.290 Sum_probs=75.9
Q ss_pred CCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEeccc
Q 007553 70 LLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDN 149 (599)
Q Consensus 70 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 149 (599)
-+.+++++|.++ .+|..+. ++|++|+|++|++.+..|..|.++++|++|++++|++++..+..|.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888776 5565553 6778888888888777677777777888888888777766555567777777777777
Q ss_pred CccCCCCcccccCCCCCCeeecccccccc
Q 007553 150 NNLTGPIPSTLYHLNQLSTLYLAYNNLVG 178 (599)
Q Consensus 150 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 178 (599)
|++++..+..|..+++|++|+|++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 77775554456667777777777776653
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-13 Score=135.67 Aligned_cols=109 Identities=20% Similarity=0.173 Sum_probs=88.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCC------
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDN------ 542 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~------ 542 (599)
+.|.....||+|+||.||+|.. .+|+.||||++..... ....+.+|+.+ .++||| ...+.
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 121 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 121 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCC
T ss_pred ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccccee
Confidence 3566678899999999999985 4689999999975422 24678889988 899999 22232
Q ss_pred cceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+++. .+++.. .+++.++..++.||+.||+||| ..+|+||||+
T Consensus 122 ~~lv~e~~~~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik 171 (371)
T 4exu_A 122 FYLVMPFMQTDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLK 171 (371)
T ss_dssp CEEEEECCCEEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EEEEEccccccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcC
Confidence 38999999976 766642 2899999999999999999999 7799999996
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.9e-13 Score=133.94 Aligned_cols=109 Identities=20% Similarity=0.183 Sum_probs=88.5
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCC------C
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTD------N 542 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~------~ 542 (599)
++|.....||+|+||.||+|.. .+|+.||||++..... ....+.+|+.+ .++||| ...+ .
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 103 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 103 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence 3466677899999999999986 4689999999965422 24578889988 899999 2222 3
Q ss_pred cceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||+++. .+++.. .+++.++..++.||++||+||| ..+|+||||+
T Consensus 104 ~~lv~e~~~~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlk 153 (353)
T 3coi_A 104 FYLVMPFMQTDLQKIMGL-----KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLK 153 (353)
T ss_dssp CEEEEECCSEEGGGTTTS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCC
T ss_pred EEEEeccccCCHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence 48999999965 777652 3899999999999999999999 7799999996
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-13 Score=137.01 Aligned_cols=116 Identities=18% Similarity=0.119 Sum_probs=91.5
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--ccc-ccC-------------CCCCCcc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFR-HYN-------------SHTDNDD 544 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~-H~n-------------~~~~~~~ 544 (599)
.++|...+.||+|+||.||+|.. .+|+.||||++........++..|+.+ .++ |++ ...+..+
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~ 132 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLC 132 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEE
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceE
Confidence 45677788999999999999985 468899999998654444566667766 443 443 3457789
Q ss_pred eeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||++++ .+++.... ...+++..+..++.||+.||+|||.+ ..+|+|||||
T Consensus 133 lv~e~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlk 186 (382)
T 2vx3_A 133 LVFEMLSYNLYDLLRNTN-FRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLK 186 (382)
T ss_dssp EEEECCCCBHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCS
T ss_pred EEEecCCCCHHHHHhhcC-cCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCC
Confidence 999999877 88887532 23489999999999999999999943 5799999996
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-13 Score=139.95 Aligned_cols=112 Identities=13% Similarity=-0.003 Sum_probs=81.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cc--cccC----CCC---------
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DF--RHYN----SHT--------- 540 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l--~H~n----~~~--------- 540 (599)
.+|...+.||+|+||.||+|.. .+|+.||||++..... ....+.+|+.+ .+ +||| ...
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~ 141 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA 141 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence 3466778899999999999995 4789999999987542 24557777554 33 6998 100
Q ss_pred -------------------CCcceeecccccc-cccccCCCCCCCCChHHH------HHHHHHHHHHHhhhhCCCCcccc
Q 007553 541 -------------------DNDDSSDEHLANN-EHFLSAPENYERVDFSPD------FSIADQSKKGFKLLADRKYRKSY 594 (599)
Q Consensus 541 -------------------~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~------~~ia~~ia~gl~yLH~~~~~~i~ 594 (599)
...++|||||++. .+++.... ..+.+..+ ..|+.||++||+||| ..+|+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~--~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~iv 216 (371)
T 3q60_A 142 VQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLD--FVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLV 216 (371)
T ss_dssp ETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHH--HSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred cCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhc--cccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCc
Confidence 2369999999933 88887532 22466666 899999999999999 78999
Q ss_pred ccccC
Q 007553 595 YQRLY 599 (599)
Q Consensus 595 Hrdl~ 599 (599)
|||||
T Consensus 217 HrDik 221 (371)
T 3q60_A 217 HGHFT 221 (371)
T ss_dssp ETTCS
T ss_pred cCcCC
Confidence 99996
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-13 Score=133.47 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=84.0
Q ss_pred hhccccceecccCCceEEEEEeC--CCC--EEEEEEecCCc----hhhHHHHHHhhc--cccccC-------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS--SGR--VVALKKLHRSE----TEELAFLETSST--DFRHYN-------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~--~g~--~vavK~l~~~~----~~~~~f~~e~~~--~l~H~n-------~~~~~~~l 545 (599)
++|.....||+|+||.||+|... +++ .||||++.... .....+.+|+.+ +++||| ...+..++
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 97 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKM 97 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCcee
Confidence 45777788999999999999852 333 68999986542 224678899988 899999 34455899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+||+++| .+++.... ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 98 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dik 148 (291)
T 1u46_A 98 VTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLA 148 (291)
T ss_dssp EEECCTTCBHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred eEecccCCCHHHHHHhcc--CCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCc
Confidence 99999999 77887432 34899999999999999999999 7799999986
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-13 Score=133.96 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=89.8
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch--hhHHHHHHhh-c--cccccC--------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET--EELAFLETSS-T--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~--~~~~f~~e~~-~--~l~H~n--------~~~~~~~lv~e 548 (599)
++|.....||+|+||.||+|.. .+|+.||||++..... ...++..|+. + .++||| ...+..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e 101 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME 101 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence 4566677899999999999996 4689999999976532 2345666665 3 889999 45677899999
Q ss_pred ccccc-cccccC--CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCc-cccccccC
Q 007553 549 HLANN-EHFLSA--PENYERVDFSPDFSIADQSKKGFKLLADRKYR-KSYYQRLY 599 (599)
Q Consensus 549 ~~~~G-~~~l~~--~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~-~i~Hrdl~ 599 (599)
|++++ .+++.. ......+++..+..++.|+++||+||| .. +|+||||+
T Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlk 153 (327)
T 3aln_A 102 LMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIK 153 (327)
T ss_dssp CCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCC
T ss_pred ecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCC
Confidence 99988 666652 112345899999999999999999999 66 99999996
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-13 Score=137.38 Aligned_cols=110 Identities=10% Similarity=0.060 Sum_probs=82.4
Q ss_pred hhccccceecccCCceEEEEEeC----CCCEEEEEEecCCchh------------hHHHHHHhhc--cccccC-------
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS----SGRVVALKKLHRSETE------------ELAFLETSST--DFRHYN------- 537 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavK~l~~~~~~------------~~~f~~e~~~--~l~H~n------- 537 (599)
++|...+.||+|+||.||+|... ++..||||........ ...+.+|+.. .++|||
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 35667788999999999999974 5788999998764321 1235566666 889999
Q ss_pred -CC----CCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 538 -SH----TDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 538 -~~----~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.. ....++||||+ +| .+++...+ .+++.++..|+.||++||+||| ..+|+||||+
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlk 178 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG---TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIK 178 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGGG---BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcC
Confidence 12 56789999999 77 88887532 5899999999999999999999 7799999996
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-13 Score=127.68 Aligned_cols=103 Identities=10% Similarity=-0.048 Sum_probs=80.2
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCch-------------------hhHHHHHHhhc--cccccC----C
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET-------------------EELAFLETSST--DFRHYN----S 538 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~-------------------~~~~f~~e~~~--~l~H~n----~ 538 (599)
.+...+.||+|+||.||+|...+|+.||||.++.... ....+.+|+.+ +++|++ .
T Consensus 91 ~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~~~v~~~~ 170 (282)
T 1zar_A 91 VDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVY 170 (282)
T ss_dssp CSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred EEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccCCCcCeEE
Confidence 3445578999999999999987799999999964321 13458889888 666666 4
Q ss_pred CCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 HTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 ~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..+..++||||+++| .+ +.. .+...++.||++||+||| ..+|+||||+
T Consensus 171 ~~~~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH---~~giiHrDlk 220 (282)
T 1zar_A 171 AWEGNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFY---HRGIVHGDLS 220 (282)
T ss_dssp EEETTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred eccceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHH---HCCCEeCCCC
Confidence 456679999999999 55 431 234579999999999999 8899999996
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-13 Score=140.37 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=85.6
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC--------CCCCCcceeecccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DF-RHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~e~~~ 551 (599)
.+|.....||+|+||+||.....+|+.||||++...... .+.+|+.+ .+ +||| ...+..++||||++
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~--~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~ 101 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFS--FADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA 101 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEE--ECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHH--HHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC
Confidence 457777889999999865544457999999999654322 24567777 66 8999 45667899999998
Q ss_pred cc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+. .+++..... ...+.+...++.||++||+||| ..+|+||||+
T Consensus 102 g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlK 145 (432)
T 3p23_A 102 ATLQEYVEQKDF--AHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLK 145 (432)
T ss_dssp EEHHHHHHSSSC--CCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCS
T ss_pred CCHHHHHHhcCC--CccchhHHHHHHHHHHHHHHHH---HCcCEeCCCC
Confidence 77 888875432 2556667899999999999999 7899999996
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-13 Score=138.21 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=83.8
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CC----CC--Ccceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SH----TD--NDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~----~~--~~~lv~ 547 (599)
.|...+.||+|+||.||+|....+..||+|++...... ..+|+.+ .++||| .. .+ ..++||
T Consensus 41 ~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~---~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~ 117 (394)
T 4e7w_A 41 AYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF---KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVL 117 (394)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS---CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEE
T ss_pred eEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch---HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEe
Confidence 46667889999999999999876667999988543221 2257776 899999 11 11 267999
Q ss_pred cccccc-cccccC-CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN-EHFLSA-PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G-~~~l~~-~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||++++ .+.+.. ......+++.....++.||++||+||| ..+|+||||+
T Consensus 118 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlk 168 (394)
T 4e7w_A 118 EYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIK 168 (394)
T ss_dssp ECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred eccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCC
Confidence 999999 444432 112345899999999999999999999 7899999996
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.1e-13 Score=130.57 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=90.6
Q ss_pred hhhccccceecccCCceEEEEEeCCCCEEEEEEecCCc---hhhHHHHHHhhc--cccc--cC--------CCCCCccee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSE---TEELAFLETSST--DFRH--YN--------SHTDNDDSS 546 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H--~n--------~~~~~~~lv 546 (599)
.++|.....||+|+||.||++...+|+.||||.+.... .....+.+|+.+ +++| || ...+..++|
T Consensus 27 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 106 (313)
T 3cek_A 27 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 106 (313)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEE
Confidence 44577778899999999999998889999999996542 224678889887 7775 77 456678999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||| .+| .+++..+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 107 ~e~-~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlk 154 (313)
T 3cek_A 107 MEC-GNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLK 154 (313)
T ss_dssp ECC-CSEEHHHHHHHC---SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred Eec-CCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCC
Confidence 995 455 8888743 35899999999999999999999 7799999996
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.35 E-value=4.1e-13 Score=133.49 Aligned_cols=115 Identities=23% Similarity=0.325 Sum_probs=90.9
Q ss_pred HhhhccccceecccCCceEEEEEe--CCCCEEEEEEecCCchh---hHHHHHHhhc-----cccccC--------C----
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQL--SSGRVVALKKLHRSETE---ELAFLETSST-----DFRHYN--------S---- 538 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~--~~g~~vavK~l~~~~~~---~~~f~~e~~~-----~l~H~n--------~---- 538 (599)
+.++|.....||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ .++||| .
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 456788888999999999999996 46889999998653221 2356677765 448999 1
Q ss_pred -CCCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 -HTDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 -~~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.....++||||+++. .+++.... ...+++.++..++.||++||+||| ..+|+||||+
T Consensus 89 ~~~~~~~lv~e~~~~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlk 147 (326)
T 1blx_A 89 DRETKLTLVFEHVDQDLTTYLDKVP-EPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLK 147 (326)
T ss_dssp SSEEEEEEEEECCSCBHHHHHHHSC-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred CCCceEEEEEecCCCCHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCC
Confidence 445678999999966 88887532 234899999999999999999999 7899999986
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-13 Score=137.79 Aligned_cols=109 Identities=19% Similarity=0.048 Sum_probs=81.5
Q ss_pred cccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cc-cccC--------CCCCCcceeecccccc-
Q 007553 486 HIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DF-RHYN--------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 486 ~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~e~~~~G- 553 (599)
...+.||+|+||+||.+...+|+.||||++.... ...+.+|+.+ ++ +||| ...+..++||||+++.
T Consensus 18 ~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~--~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~gsL 95 (434)
T 2rio_A 18 VSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF--CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCNLNL 95 (434)
T ss_dssp EEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG--HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCSEEH
T ss_pred eccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH--HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCCCCH
Confidence 3457799999999976665679999999986532 3456778887 44 8999 4567789999999755
Q ss_pred cccccCCCCC-C---CCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 EHFLSAPENY-E---RVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 ~~~l~~~~~~-~---~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++...... . ..++.++..|+.||+.||+||| ..+|+||||+
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLk 142 (434)
T 2rio_A 96 QDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLK 142 (434)
T ss_dssp HHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred HHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence 8888754321 1 1244457889999999999999 7899999996
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-13 Score=134.08 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=85.0
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-------hHHHHHHhhc--cc----cccC--------CC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-------ELAFLETSST--DF----RHYN--------SH 539 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-------~~~f~~e~~~--~l----~H~n--------~~ 539 (599)
.++|...+.||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ ++ +||| ..
T Consensus 30 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~ 109 (312)
T 2iwi_A 30 EAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFET 109 (312)
T ss_dssp ---CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC--
T ss_pred hhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEec
Confidence 45688888999999999999985 57899999999654321 2234456665 55 8999 45
Q ss_pred CCCcceeecc-cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 540 TDNDDSSDEH-LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 540 ~~~~~lv~e~-~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+..++|+|| +++| .+++..+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 110 ~~~~~~v~e~~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk 166 (312)
T 2iwi_A 110 QEGFMLVLERPLPAQDLFDYITEK---GPLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIK 166 (312)
T ss_dssp ---CEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCS
T ss_pred CCeEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence 6778999999 7777 8888742 24899999999999999999999 7899999986
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.2e-13 Score=134.44 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=88.9
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--ccc-----------ccC-----------
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFR-----------HYN----------- 537 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~-----------H~n----------- 537 (599)
++|.....||+|+||.||+|.. .+|+.||||.+.........+.+|+.+ +++ |||
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 98 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK 98 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhcc
Confidence 3567778899999999999995 578999999998655445667778776 555 777
Q ss_pred -CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCc-cccccccC
Q 007553 538 -SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYR-KSYYQRLY 599 (599)
Q Consensus 538 -~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~-~i~Hrdl~ 599 (599)
..+...++||||+ +| .+++.... ...+++.++..|+.||+.||+||| .. +|+||||+
T Consensus 99 ~~~~~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dik 159 (373)
T 1q8y_A 99 GPNGVHVVMVFEVL-GENLLALIKKYE-HRGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIK 159 (373)
T ss_dssp ETTEEEEEEEECCC-CEEHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCS
T ss_pred CCCCceEEEEEecC-CCCHHHHHHHhh-ccCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCC
Confidence 1223678999999 55 77776532 234899999999999999999999 65 99999996
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=128.33 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=79.8
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchh--hHHHHHHh-hc--cccccC--------CCCCCcceee
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE--ELAFLETS-ST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~--~~~f~~e~-~~--~l~H~n--------~~~~~~~lv~ 547 (599)
.++|.....||+|+||.||+|... +|+.||||++...... ..++..|. .+ .++||| ...+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 456777788999999999999974 6899999999765322 23333343 33 889999 4567789999
Q ss_pred cccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCc-cccccccC
Q 007553 548 EHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYR-KSYYQRLY 599 (599)
Q Consensus 548 e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~-~i~Hrdl~ 599 (599)
||+.+. ..+.... ...+++.++..++.||++||+||| .. +|+||||+
T Consensus 104 e~~~~~~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlk 152 (318)
T 2dyl_A 104 ELMGTCAEKLKKRM--QGPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVK 152 (318)
T ss_dssp CCCSEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCC
T ss_pred eccCCcHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCC
Confidence 999433 4333321 234899999999999999999999 64 99999986
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-14 Score=143.60 Aligned_cols=160 Identities=20% Similarity=0.176 Sum_probs=84.8
Q ss_pred CCCCEEeccCCcccccCCccCC-----CCCCCcEEEeecCcCCccCCccc-cCCCcCCEEeeecccccccCCccc-----
Q 007553 68 RDLLELNLSYNILNGSIPLEFG-----NLKDLYDLRLQGNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQEV----- 136 (599)
Q Consensus 68 ~~L~~L~L~~n~~~~~~p~~~~-----~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~l----- 136 (599)
++|++|+|++|.++......+. ..++|++|+|++|.+.+.....+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4555666666655432222222 12456666666665543222222 224456666666666554322222
Q ss_pred cCCCcccEEecccCccCCC----CcccccCCCCCCeeeccccccccc----CccccCCCCCCCEEEccCCccccc----C
Q 007553 137 GNLKNLVSLFLDNNNLTGP----IPSTLYHLNQLSTLYLAYNNLVGP----LPKEVGNLKNLDSLLLNRNNLTGP----I 204 (599)
Q Consensus 137 ~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~ 204 (599)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+... ++..+...++|++|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345666666666665532 233345566666666666666532 234455566777777777766542 2
Q ss_pred chhccCCCCCCEEeCCCCcCccc
Q 007553 205 PSTIGFLNLLDELRLSHNRLDGP 227 (599)
Q Consensus 205 ~~~~~~l~~L~~L~l~~n~l~~~ 227 (599)
...+...+.|+.|+|++|.+++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHH
Confidence 33344556677777777777644
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=6.2e-13 Score=131.80 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=89.1
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-------hHHHHHHhhc--ccc--ccC--------CCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-------ELAFLETSST--DFR--HYN--------SHTD 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-------~~~f~~e~~~--~l~--H~n--------~~~~ 541 (599)
.++|.....||+|+||.||+|.. .+|+.||||.+...... ...+.+|+.+ +++ ||| ...+
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~ 121 (320)
T 3a99_A 42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD 121 (320)
T ss_dssp TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC
Confidence 34577778899999999999985 57899999998654211 2345567776 665 588 4567
Q ss_pred Ccceeeccccc-c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLAN-N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~-G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++|+||+.+ | .+++..+ ..+++.++..++.||++||+||| ..+|+||||+
T Consensus 122 ~~~lv~e~~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlk 176 (320)
T 3a99_A 122 SFVLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCH---NCGVLHRDIK 176 (320)
T ss_dssp EEEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred cEEEEEEcCCCCccHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCC
Confidence 78999999987 4 7777742 35899999999999999999999 7899999996
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.5e-14 Score=141.07 Aligned_cols=206 Identities=18% Similarity=0.128 Sum_probs=132.7
Q ss_pred CCCCCEEeccCCcccccCCccC--CCCCCCcEEEeecCcCCccCCccccC-----CCcCCEEeeecccccccCCccc-cC
Q 007553 67 LRDLLELNLSYNILNGSIPLEF--GNLKDLYDLRLQGNKLDGLIPSSIGN-----LTNLTHLDLSLNQLSGRLPQEV-GN 138 (599)
Q Consensus 67 l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~i~~~~~~~l-~~ 138 (599)
++..+.+++.+|...... ..| .-++.|++|+|++|.++......+.. .++|++|++++|.++......+ ..
T Consensus 46 ~~~~~~lnl~~cl~e~~~-~~l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 124 (372)
T 3un9_A 46 LPPSELLDHLFFHYEFQN-QRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV 124 (372)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHH
T ss_pred CChhhhHHHHHHHHHhcC-HHHHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHH
Confidence 344556666666332111 111 12467899999999887543333332 3689999999998875433222 34
Q ss_pred CCcccEEecccCccCCCCcccc-----cCCCCCCeeeccccccccc----CccccCCCCCCCEEEccCCccccc----Cc
Q 007553 139 LKNLVSLFLDNNNLTGPIPSTL-----YHLNQLSTLYLAYNNLVGP----LPKEVGNLKNLDSLLLNRNNLTGP----IP 205 (599)
Q Consensus 139 l~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~ 205 (599)
+++|++|+|++|.++......+ ...++|++|+|++|.+... ++..+..+++|++|++++|.+++. +.
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 6788999999998875433333 3467899999999988642 344556788899999999988642 34
Q ss_pred hhccCCCCCCEEeCCCCcCccc----CcccCCCCCCCCEEEccCCcCCCCCCcccCCC---C--CCCEEe--ccCccee
Q 007553 206 STIGFLNLLDELRLSHNRLDGP----IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNL---K--YLDSLS--LDRNNLI 273 (599)
Q Consensus 206 ~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l---~--~L~~L~--L~~n~l~ 273 (599)
..+...+.|+.|+|++|.+++. +...+...++|++|+|++|.+++.....+..+ . .|+.+. +..+.+.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 5667778899999999988753 33345567889999999998875433333222 2 166666 5555554
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-12 Score=136.02 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=74.3
Q ss_pred ccceecccCCceEEEEEeCCCCEEEEEEecCCch-----h----hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 487 IKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSET-----E----ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~-----~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
..+.||+|+||.||+|.. .+..+|+|+...... . .+.|.+|+++ +++||| ...+..++||
T Consensus 340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm 418 (540)
T 3en9_A 340 PEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM 418 (540)
T ss_dssp --------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred CCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence 356799999999999965 588899998643221 1 2358899998 999999 3567789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++.. +..++.||++||+||| ..+|+|||||
T Consensus 419 E~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH---~~gIiHrDiK 458 (540)
T 3en9_A 419 SYINGKLAKDVIED-----------NLDIAYKIGEIVGKLH---KNDVIHNDLT 458 (540)
T ss_dssp ECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHH---HTTEECTTCC
T ss_pred ECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHH---HCcCccCCCC
Confidence 999999 888873 5689999999999999 7899999997
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=9.8e-12 Score=124.66 Aligned_cols=104 Identities=23% Similarity=0.256 Sum_probs=70.4
Q ss_pred EEEcccC-cCcccCCcCCCCCCCCCEEeccC-CcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeec
Q 007553 48 VLDLSYN-RLTGTIPSEIGSLRDLLELNLSY-NILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125 (599)
Q Consensus 48 ~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 125 (599)
.++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3466666 666 4666 66777777777774 777766666677777777777777777766666677777777777777
Q ss_pred ccccccCCccccCCCcccEEecccCccCC
Q 007553 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTG 154 (599)
Q Consensus 126 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~ 154 (599)
|.+++..+..+..++ |+.|+|.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777755555555554 7777777776653
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-08 Score=103.74 Aligned_cols=301 Identities=10% Similarity=0.074 Sum_probs=172.3
Q ss_pred CCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCE
Q 007553 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTH 120 (599)
Q Consensus 41 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 120 (599)
....+|+.+.+... ++.+-..+|.++.+|+.++|..+ ++.....+|.++ +|+.+.+..+ +..+....|.. .+|+.
T Consensus 43 ~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~ 117 (379)
T 4h09_A 43 KDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDD 117 (379)
T ss_dssp GGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSE
T ss_pred ccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccc
Confidence 34455666666433 44344455666666666666544 443445556655 4555555432 33233334443 35666
Q ss_pred EeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccccc------------ccCccccCCCC
Q 007553 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLV------------GPLPKEVGNLK 188 (599)
Q Consensus 121 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~l~~l~ 188 (599)
+.+..+ +.......+.+. +|+.+.+-.+ ++......|..+..++.+.+..+... ......+....
T Consensus 118 i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp EECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred ccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 666543 222223333332 3444443322 22222334555555555555432211 01122334445
Q ss_pred CCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEecc
Q 007553 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 268 (599)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 268 (599)
.+..+.+..... ......+..+..|+.+.+..+ +.......|..+..|+.+.+..+ ++......|..+.+|+.+.+.
T Consensus 195 ~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 195 TGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp CCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence 555555544322 133345666777888877654 33344556778888888888665 444555677888888888886
Q ss_pred CcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccC
Q 007553 269 RNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTI 348 (599)
Q Consensus 269 ~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 348 (599)
.+ +.......|..+.+|+.+.+.++.+...-..+|.+|.+|+.+.+..+ ++..-..+|.++.+|+.+.+..+ ++..-
T Consensus 272 ~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 272 AK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp CC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred cc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence 54 44344556788888999988888777666678888889999988654 54444567888888988888654 55444
Q ss_pred CcccCCC
Q 007553 349 PSQLGKI 355 (599)
Q Consensus 349 ~~~~~~~ 355 (599)
..+|...
T Consensus 349 ~~aF~~c 355 (379)
T 4h09_A 349 SGAFEGS 355 (379)
T ss_dssp TTTTTTS
T ss_pred hhHhhCC
Confidence 4555544
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.2e-12 Score=129.11 Aligned_cols=115 Identities=10% Similarity=-0.038 Sum_probs=83.6
Q ss_pred hhhccccceecccCCceEEEEE-eCCCCEEEEEEecCCch----hhHHHHHHhhc--cccc-cC------C---------
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSET----EELAFLETSST--DFRH-YN------S--------- 538 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H-~n------~--------- 538 (599)
++.|...+.||+|+||.||+|. ..+|+.||||++..... ....|.+|+.+ .++| +| .
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 4456677889999999999999 45799999999874322 14568888877 7766 22 0
Q ss_pred -------------C------CCCcceeecccccc-cccccC----CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCcccc
Q 007553 539 -------------H------TDNDDSSDEHLANN-EHFLSA----PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSY 594 (599)
Q Consensus 539 -------------~------~~~~~lv~e~~~~G-~~~l~~----~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~ 594 (599)
. ....+++|+++.+. .++++. ......++|..++.|+.||++||+||| ..+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ii 233 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLV 233 (413)
T ss_dssp EECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred cccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcc
Confidence 0 12235566655544 666631 122345889999999999999999999 78999
Q ss_pred ccccC
Q 007553 595 YQRLY 599 (599)
Q Consensus 595 Hrdl~ 599 (599)
|||||
T Consensus 234 HrDiK 238 (413)
T 3dzo_A 234 HTYLR 238 (413)
T ss_dssp CSCCC
T ss_pred cCCcc
Confidence 99997
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=7.5e-11 Score=118.16 Aligned_cols=104 Identities=23% Similarity=0.206 Sum_probs=77.3
Q ss_pred CEEeccCC-cccccCCccCCCCCCCcEEEeec-CcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecc
Q 007553 71 LELNLSYN-ILNGSIPLEFGNLKDLYDLRLQG-NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLD 148 (599)
Q Consensus 71 ~~L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 148 (599)
..++++++ .++ .+|. |..+++|++|+|++ |.+.+..+..|..+++|++|+|++|++++..|+.|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677777 777 4666 88888888888885 88877766778888888888888888887777777888888888888
Q ss_pred cCccCCCCcccccCCCCCCeeeccccccc
Q 007553 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 149 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 177 (599)
+|++++..+..|..++ |+.|+|.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8887765555555544 777777776655
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.8e-09 Score=104.04 Aligned_cols=303 Identities=12% Similarity=0.055 Sum_probs=196.1
Q ss_pred ccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCC
Q 007553 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94 (599)
Q Consensus 15 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 94 (599)
+....+|+.+.+. ..++.--..+|.+|.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ ++.....+|... +|
T Consensus 42 ~~~~~~i~~v~ip--~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVN--SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGGCSEEEEC--TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred cccccCCEEEEeC--CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 4455677888876 3555444556788888888888654 554556677776 5777777654 443445566654 68
Q ss_pred cEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCC------------CCcccccC
Q 007553 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG------------PIPSTLYH 162 (599)
Q Consensus 95 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~------------~~~~~l~~ 162 (599)
+.+.+..+ +.......|.+. +|+.+.+..+ ++......+.++.+++.+.+..+.... .....+..
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 88888664 222333444443 5666555433 333445566777777777766543221 11223444
Q ss_pred CCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEE
Q 007553 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLD 242 (599)
Q Consensus 163 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 242 (599)
...+..+.+.... .......+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++......|..+.+|+.+.
T Consensus 193 ~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 5556665554332 2233455667788888887654 33334456778888999988765 5545556788889999998
Q ss_pred ccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCcc
Q 007553 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322 (599)
Q Consensus 243 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 322 (599)
+..+ +.......|..+++|+.+.+.++.+.......|.++.+|+.+.|..+ ++.+-..+|.+|.+|+.+.+..+ ++.
T Consensus 270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~ 346 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL 346 (379)
T ss_dssp ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence 8654 44445567888999999999888877666678889999999999754 55555678899999999988654 443
Q ss_pred CCCccccCCC
Q 007553 323 SIPSEIGNLI 332 (599)
Q Consensus 323 ~~~~~~~~l~ 332 (599)
.-..+|.++.
T Consensus 347 I~~~aF~~c~ 356 (379)
T 4h09_A 347 IESGAFEGSS 356 (379)
T ss_dssp ECTTTTTTSS
T ss_pred EchhHhhCCC
Confidence 3445666554
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-11 Score=117.78 Aligned_cols=110 Identities=14% Similarity=-0.001 Sum_probs=77.7
Q ss_pred cccceecccCCceEEEEEe-CCCCE--EEEEEecCCchh-------------------------hHHHHHHhhc--cccc
Q 007553 486 HIKYCIGTGGYGSVYRAQL-SSGRV--VALKKLHRSETE-------------------------ELAFLETSST--DFRH 535 (599)
Q Consensus 486 ~~~~~lg~g~~g~v~~~~~-~~g~~--vavK~l~~~~~~-------------------------~~~f~~e~~~--~l~H 535 (599)
.....||+|+||.||+|.. .+|+. ||||.++..... ...+.+|+.. +++|
T Consensus 50 ~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~ 129 (258)
T 1zth_A 50 AMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKE 129 (258)
T ss_dssp EEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHh
Confidence 3456799999999999997 67988 999987543111 1256778877 7777
Q ss_pred cC------CCCCCcceeeccccc-c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 536 YN------SHTDNDDSSDEHLAN-N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 536 ~n------~~~~~~~lv~e~~~~-G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++ ...+..++||||+.+ | ...|..... ..++.+...++.||+.||.|||. ..+|+||||+
T Consensus 130 ~~i~~p~~~~~~~~~lVmE~~g~~g~~~~~L~~~~~--~~~~~~~~~i~~qi~~~l~~lH~--~~givHrDlk 198 (258)
T 1zth_A 130 AGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGR--ELKELDVEGIFNDVVENVKRLYQ--EAELVHADLS 198 (258)
T ss_dssp TTCCCCCEEEEETTEEEEECCEETTEECCBHHHHGG--GGGGSCHHHHHHHHHHHHHHHHH--TSCEECSSCS
T ss_pred CCCCCCeEEEcCCCEEEEEecCCCCCccccHHHHhh--ccChHHHHHHHHHHHHHHHHHHH--HCCEEeCCCC
Confidence 75 233456899999953 5 333332110 12355688999999999999993 3599999996
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-11 Score=131.17 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=71.0
Q ss_pred ecccCCceEEEEE-eCCCCEEEEEEecCCc-----------hhhHHHHHHhhc--cc-cccC--------CCCCCcceee
Q 007553 491 IGTGGYGSVYRAQ-LSSGRVVALKKLHRSE-----------TEELAFLETSST--DF-RHYN--------SHTDNDDSSD 547 (599)
Q Consensus 491 lg~g~~g~v~~~~-~~~g~~vavK~l~~~~-----------~~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv~ 547 (599)
.+.|+.|.+..++ +--|+.+|||.+.... ...++|.+|+++ ++ .|+| .+.+..||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 4455555555433 2358899999986431 113579999998 77 7888 4678899999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||++|| .++|... .+++.. +|+.||+.||+|+| ..+|||||||
T Consensus 322 Eyv~G~~L~d~i~~~---~~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIK 366 (569)
T 4azs_A 322 EKLPGRLLSDMLAAG---EEIDRE---KILGSLLRSLAALE---KQGFWHDDVR 366 (569)
T ss_dssp ECCCSEEHHHHHHTT---CCCCHH---HHHHHHHHHHHHHH---HTTCEESCCC
T ss_pred ecCCCCcHHHHHHhC---CCCCHH---HHHHHHHHHHHHHH---HCCceeccCc
Confidence 999999 8888853 235543 58999999999999 8999999997
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-10 Score=112.18 Aligned_cols=103 Identities=10% Similarity=-0.009 Sum_probs=70.0
Q ss_pred ccccceecccCCceEEEEEeCCCCEEEEEEecCCchh---------------hHHHH--------HHhhc--cccccCC-
Q 007553 485 FHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE---------------ELAFL--------ETSST--DFRHYNS- 538 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~---------------~~~f~--------~e~~~--~l~H~n~- 538 (599)
+.....||+|++|.||+|.-.+|+.||||.++..... ...+. +|... ++.++..
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~ 176 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP 176 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456789999999999999888999999987542110 11111 23322 4444431
Q ss_pred -----CCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 539 -----HTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 539 -----~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.....++||||++++ .++.. ......++.||+.||.||| ..+||||||+
T Consensus 177 vp~p~~~~~~~LVME~i~G~~L~~l~~---------~~~~~~l~~qll~~l~~lH---~~gIVHrDLK 232 (397)
T 4gyi_A 177 VPEPIAQSRHTIVMSLVDALPMRQVSS---------VPDPASLYADLIALILRLA---KHGLIHGDFN 232 (397)
T ss_dssp CCCEEEEETTEEEEECCSCEEGGGCCC---------CSCHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred CCeeeeccCceEEEEecCCccHhhhcc---------cHHHHHHHHHHHHHHHHHH---HCCCcCCCCC
Confidence 112236999999877 43332 1234568899999999999 6799999996
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-10 Score=115.69 Aligned_cols=180 Identities=17% Similarity=0.130 Sum_probs=101.3
Q ss_pred ccCCCCCCCEEEcccCcCc---------ccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCC
Q 007553 39 ETGALSRLKVLDLSYNRLT---------GTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIP 109 (599)
Q Consensus 39 ~~~~~~~L~~L~l~~n~~~---------~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~ 109 (599)
....+++|+.|.+.+.... +.++..+..+|+|+.|+|++|.-. .++. + .+++|++|+|..|.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 3445566666666543221 112233345677777777776311 1222 3 26777777777776653322
Q ss_pred cccc--CCCcCCEEeeec--cccccc-----CCccc--cCCCcccEEecccCccCCCCcccc---cCCCCCCeeeccccc
Q 007553 110 SSIG--NLTNLTHLDLSL--NQLSGR-----LPQEV--GNLKNLVSLFLDNNNLTGPIPSTL---YHLNQLSTLYLAYNN 175 (599)
Q Consensus 110 ~~~~--~l~~L~~L~l~~--n~i~~~-----~~~~l--~~l~~L~~L~l~~n~i~~~~~~~l---~~l~~L~~L~l~~n~ 175 (599)
..+. .+++|++|+|+. +...+. +...+ ..+++|++|++.+|.+....+..+ ..+++|++|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 3333 577777777753 111110 11122 246788888888887764332222 246788888888887
Q ss_pred cccc----CccccCCCCCCCEEEccCCcccccCchhccC-CCCCCEEeCCCCc
Q 007553 176 LVGP----LPKEVGNLKNLDSLLLNRNNLTGPIPSTIGF-LNLLDELRLSHNR 223 (599)
Q Consensus 176 ~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~ 223 (599)
+.+. ++..+..+++|+.|+++.|.++...-..+.. + ...++++.+.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7653 2333345688888888888776433332322 1 3557777765
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-10 Score=114.29 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=129.1
Q ss_pred CCCCEEEcccCcCcc-c-------CCcCCCCCCCCCEEeccCCccc---------ccCCccCCCCCCCcEEEeecCcCCc
Q 007553 44 SRLKVLDLSYNRLTG-T-------IPSEIGSLRDLLELNLSYNILN---------GSIPLEFGNLKDLYDLRLQGNKLDG 106 (599)
Q Consensus 44 ~~L~~L~l~~n~~~~-~-------~~~~~~~l~~L~~L~L~~n~~~---------~~~p~~~~~l~~L~~L~L~~n~~~~ 106 (599)
..++.|.+......+ . +..+...+++|+.|.+...... +.++..+..+++|+.|+|++|.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 456777776544331 1 1233456789999999765321 1123344678999999999984222
Q ss_pred cCCccccCCCcCCEEeeecccccccCCcccc--CCCcccEEeccc--CccCCC-----Ccccc--cCCCCCCeeeccccc
Q 007553 107 LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG--NLKNLVSLFLDN--NNLTGP-----IPSTL--YHLNQLSTLYLAYNN 175 (599)
Q Consensus 107 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~l~~--n~i~~~-----~~~~l--~~l~~L~~L~l~~n~ 175 (599)
++. +. +++|++|++..|.+.......+. .+++|+.|+|+. |...+. +...+ ..+++|++|+|.+|.
T Consensus 187 -l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 187 -IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp -CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred -ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 333 43 89999999999887654333443 789999999863 221111 11223 257899999999998
Q ss_pred ccccCcccc---CCCCCCCEEEccCCccccc----CchhccCCCCCCEEeCCCCcCcccCcccCCC-CCCCCEEEccCCc
Q 007553 176 LVGPLPKEV---GNLKNLDSLLLNRNNLTGP----IPSTIGFLNLLDELRLSHNRLDGPIPPTIGN-LTYLTSLDLSSNQ 247 (599)
Q Consensus 176 ~~~~~~~~l---~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~ 247 (599)
+....+..+ ..+++|++|+++.|.+.+. ++..+..+++|+.|++++|.++...-..+.. + ...++++.++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 865333233 3578999999999988753 3333456789999999999887543333332 2 3568888776
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-08 Score=90.96 Aligned_cols=16 Identities=6% Similarity=0.169 Sum_probs=7.6
Q ss_pred CCCCCcEEEeecCcCC
Q 007553 90 NLKDLYDLRLQGNKLD 105 (599)
Q Consensus 90 ~l~~L~~L~L~~n~~~ 105 (599)
..++|++|+|++|.+.
T Consensus 63 ~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TCCSCCEEECTTSCCC
T ss_pred hCCCcCEEECcCCCCC
Confidence 3444555555555443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.8e-08 Score=90.52 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=72.2
Q ss_pred cccCCCCCCCEEEcccC-cCccc----CCcCCCCCCCCCEEeccCCcccccC----CccCCCCCCCcEEEeecCcCCcc-
Q 007553 38 SETGALSRLKVLDLSYN-RLTGT----IPSEIGSLRDLLELNLSYNILNGSI----PLEFGNLKDLYDLRLQGNKLDGL- 107 (599)
Q Consensus 38 ~~~~~~~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~----p~~~~~l~~L~~L~L~~n~~~~~- 107 (599)
..+..++.|++|+|++| .+.+. +...+...++|++|+|++|.+.... ...+...++|++|+|++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34567888999999988 77632 3344566788999999999886532 23344557788888888887643
Q ss_pred ---CCccccCCCcCCEEee--eccccccc----CCccccCCCcccEEecccCcc
Q 007553 108 ---IPSSIGNLTNLTHLDL--SLNQLSGR----LPQEVGNLKNLVSLFLDNNNL 152 (599)
Q Consensus 108 ---~~~~~~~l~~L~~L~l--~~n~i~~~----~~~~l~~l~~L~~L~l~~n~i 152 (599)
+...+...++|++|++ ++|.+... +...+...+.|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2344555566666666 55666543 222333445555555555544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-08 Score=94.39 Aligned_cols=80 Identities=31% Similarity=0.439 Sum_probs=49.3
Q ss_pred CCCCCCcEEEeecCcCCcc--CCccccCCCcCCEEeeecccccccCCccccCCC--cccEEecccCccCCCCc-------
Q 007553 89 GNLKDLYDLRLQGNKLDGL--IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK--NLVSLFLDNNNLTGPIP------- 157 (599)
Q Consensus 89 ~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~--~L~~L~l~~n~i~~~~~------- 157 (599)
.++++|+.|+|++|++.+. +|..+..+++|+.|+|++|.+.+. ..+..++ +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3466677777777776653 334555677777777777776644 2233333 77777777777765443
Q ss_pred ccccCCCCCCeee
Q 007553 158 STLYHLNQLSTLY 170 (599)
Q Consensus 158 ~~l~~l~~L~~L~ 170 (599)
..+..+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2355677777765
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.3e-08 Score=93.33 Aligned_cols=79 Identities=27% Similarity=0.297 Sum_probs=49.3
Q ss_pred CCCCCCEEeccCCcccc--cCCccCCCCCCCcEEEeecCcCCccCCccccCCC--cCCEEeeecccccccCC-------c
Q 007553 66 SLRDLLELNLSYNILNG--SIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLT--NLTHLDLSLNQLSGRLP-------Q 134 (599)
Q Consensus 66 ~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~l~~n~i~~~~~-------~ 134 (599)
++++|++|+|++|.+++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|.+.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46667777777777765 3344455677777777777777654 2233333 67777777777765444 2
Q ss_pred cccCCCcccEEe
Q 007553 135 EVGNLKNLVSLF 146 (599)
Q Consensus 135 ~l~~l~~L~~L~ 146 (599)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677777776
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.24 E-value=3.4e-07 Score=79.94 Aligned_cols=83 Identities=11% Similarity=0.136 Sum_probs=41.7
Q ss_pred CCCEEeccCCcccccCCccCCCCCCCcEEEeecCc-CCccCCccccCC----CcCCEEeeeccc-ccccCCccccCCCcc
Q 007553 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK-LDGLIPSSIGNL----TNLTHLDLSLNQ-LSGRLPQEVGNLKNL 142 (599)
Q Consensus 69 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~l~~l~~L 142 (599)
+|+.||+++|.++...-..+.++++|++|+|++|. +++..-..++.+ ++|++|++++|. |++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544333344555555555555553 433222333332 246666666653 544333345556666
Q ss_pred cEEecccCc
Q 007553 143 VSLFLDNNN 151 (599)
Q Consensus 143 ~~L~l~~n~ 151 (599)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.21 E-value=6e-07 Score=78.40 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=59.7
Q ss_pred CCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeeccc-ccccCCccccCC----CcccEEecccCc-cCCCCc
Q 007553 84 IPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQ-LSGRLPQEVGNL----KNLVSLFLDNNN-LTGPIP 157 (599)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l----~~L~~L~l~~n~-i~~~~~ 157 (599)
+|.....-.+|++||+++|.+++..-..+..+++|++|+|++|. +++..-..++.+ ++|++|++++|. ++..--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433333578888888888876655667788888888888884 665433445553 367777777764 654433
Q ss_pred ccccCCCCCCeeeccccc
Q 007553 158 STLYHLNQLSTLYLAYNN 175 (599)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~ 175 (599)
..+..+++|++|+|++|.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 345566777777777664
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=3.5e-05 Score=68.55 Aligned_cols=12 Identities=8% Similarity=-0.094 Sum_probs=5.2
Q ss_pred CCCCCEEEccCC
Q 007553 187 LKNLDSLLLNRN 198 (599)
Q Consensus 187 l~~L~~L~l~~n 198 (599)
.+.|+.|+++.|
T Consensus 156 N~tL~~L~l~~~ 167 (197)
T 1pgv_A 156 NESLLRVGISFA 167 (197)
T ss_dssp CSSCCEEECCCC
T ss_pred CCCcCeEeccCC
Confidence 344444444433
|
| >3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00036 Score=66.08 Aligned_cols=98 Identities=9% Similarity=-0.032 Sum_probs=64.5
Q ss_pred HhhhccccceecccCCceEEEEEeCCCCEEEEEEecCCc-hhhHHHHHHhhc--ccc-c---cC-----CCCCCcceeec
Q 007553 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSE-TEELAFLETSST--DFR-H---YN-----SHTDNDDSSDE 548 (599)
Q Consensus 481 at~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~-~~~~~f~~e~~~--~l~-H---~n-----~~~~~~~lv~e 548 (599)
...++......+.|+.+.||+... .|..+++|+..... .....+.+|+.+ .+. | |. ...+..++|||
T Consensus 12 ~l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e 90 (263)
T 3tm0_A 12 LIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMS 90 (263)
T ss_dssp HHTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEE
T ss_pred HhccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEE
Confidence 344555555677788899999885 47899999986421 112346666665 332 2 22 34456789999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLAD 587 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~ 587 (599)
|++|. .+.+. +..+...++.+++++|+.||+
T Consensus 91 ~i~G~~l~~~~~--------~~~~~~~~~~~l~~~l~~LH~ 123 (263)
T 3tm0_A 91 EADGVLCSEEYE--------DEQSPEKIIELYAECIRLFHS 123 (263)
T ss_dssp CCSSEEHHHHCC--------TTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCCeehhhccC--------CcccHHHHHHHHHHHHHHHhC
Confidence 99988 43321 112345789999999999996
|
| >1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00032 Score=66.27 Aligned_cols=84 Identities=8% Similarity=-0.048 Sum_probs=55.0
Q ss_pred cccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--ccc-----ccC-----CCCCCcceeecccccc-ccccc
Q 007553 492 GTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFR-----HYN-----SHTDNDDSSDEHLANN-EHFLS 558 (599)
Q Consensus 492 g~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~-----H~n-----~~~~~~~lv~e~~~~G-~~~l~ 558 (599)
+.|..+.||+....+|..++||...... ...+..|+.+ .+. -|. ..++..++||||++++ -+ ..
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~~--~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~-~~ 105 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSGA--LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL-SS 105 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSCT--TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT-TS
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCccc--chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC-cC
Confidence 3556689999988778889999876531 1234455554 332 232 2344579999999987 43 22
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhhhhC
Q 007553 559 APENYERVDFSPDFSIADQSKKGFKLLAD 587 (599)
Q Consensus 559 ~~~~~~~l~~~~~~~ia~~ia~gl~yLH~ 587 (599)
. . +...++.++++.|+.||.
T Consensus 106 ~------~---~~~~~~~~l~~~l~~lh~ 125 (264)
T 1nd4_A 106 H------L---APAEKVSIMADAMRRLHT 125 (264)
T ss_dssp C------C---CHHHHHHHHHHHHHHHTT
T ss_pred c------C---CHhHHHHHHHHHHHHHhC
Confidence 1 1 134678889999999995
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00011 Score=65.27 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=25.9
Q ss_pred ccCCCcccEEecccCccCCC----CcccccCCCCCCeeeccccccccc----CccccCCCCCCCEEEcc
Q 007553 136 VGNLKNLVSLFLDNNNLTGP----IPSTLYHLNQLSTLYLAYNNLVGP----LPKEVGNLKNLDSLLLN 196 (599)
Q Consensus 136 l~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~ 196 (599)
+..-+.|++|+|++|.+... +.+.+...+.|++|+|++|.|... +.+.+...+.|++|+|+
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECC
Confidence 33344444444444444421 223333444455555555544421 22233333445555554
|
| >3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.002 Score=64.05 Aligned_cols=94 Identities=7% Similarity=0.001 Sum_probs=60.5
Q ss_pred cceecccCCceEEEEEeCCCCEEEEEEec--CCch--hhHHHHHHhhc--ccc-----ccC-----CCC---CCcceeec
Q 007553 488 KYCIGTGGYGSVYRAQLSSGRVVALKKLH--RSET--EELAFLETSST--DFR-----HYN-----SHT---DNDDSSDE 548 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~~g~~vavK~l~--~~~~--~~~~f~~e~~~--~l~-----H~n-----~~~---~~~~lv~e 548 (599)
...++.|.++.||+.... +..+++|+.. .... ....+.+|..+ .+. .|. ... +..++|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 345888999999998875 4678888776 3321 12345556655 333 333 122 34789999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLAD 587 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~ 587 (599)
|+++. .+... ..++..++..++.++++.|+.||.
T Consensus 122 ~v~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~La~LH~ 157 (359)
T 3dxp_A 122 FVSGRVLWDQSL-----PGMSPAERTAIYDEMNRVIAAMHT 157 (359)
T ss_dssp CCCCBCCCCTTC-----TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCeecCCCcc-----ccCCHHHHHHHHHHHHHHHHHHhC
Confidence 99977 32111 126788899999999999999995
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0043 Score=51.35 Aligned_cols=57 Identities=26% Similarity=0.264 Sum_probs=36.3
Q ss_pred CEEEcccCcCc-ccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCC
Q 007553 47 KVLDLSYNRLT-GTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105 (599)
Q Consensus 47 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 105 (599)
.+++.+++.++ ..+|..+ -++|++|+|++|+++...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777665 2445332 235777777777777655566677777777777777654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0062 Score=50.37 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=32.8
Q ss_pred EEEcccCcCc-cCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccC
Q 007553 312 NLAVNHNSLS-GSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVI 372 (599)
Q Consensus 312 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 372 (599)
.++-+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 4444555543 13333221 34666666666666555555666666777777777666543
|
| >2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.06 Score=34.11 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=11.6
Q ss_pred eEeehHH-HHHHHHHHHHHhhhhhcccc
Q 007553 422 LVTIILP-MVAFLALIFGILFVHRRMDE 448 (599)
Q Consensus 422 ~~~~~~~-~~~~~~~~~~~~~~~rr~~~ 448 (599)
+++++++ ++++++++++++++.||++.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 3344443 33333444444444454443
|
| >3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A | Back alignment and structure |
|---|
Probab=92.47 E-value=0.18 Score=48.31 Aligned_cols=89 Identities=10% Similarity=0.045 Sum_probs=56.2
Q ss_pred ceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cc-cc-----cC----C-CCC---Ccceeeccccc
Q 007553 489 YCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DF-RH-----YN----S-HTD---NDDSSDEHLAN 552 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l-~H-----~n----~-~~~---~~~lv~e~~~~ 552 (599)
..++.|....||+.. ..+++|.-... .....+.+|.++ .+ .| |. . ..+ ..++||||++|
T Consensus 26 ~~~~~G~~n~v~~v~----~~~vlR~~~~~-~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G 100 (304)
T 3sg8_A 26 EISGEGNDCIAYEIN----RDFIFKFPKHS-RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKG 100 (304)
T ss_dssp CEEEECSSEEEEEST----TSEEEEEESSH-HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCC
T ss_pred EecCCCCcceEEEEC----CEEEEEecCCc-chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCC
Confidence 447888888998753 45778875432 223456666665 33 22 22 1 122 34788999997
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLAD 587 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~ 587 (599)
. .+... ..++..++..++.++++.++.||.
T Consensus 101 ~~l~~~~~-----~~l~~~~~~~~~~~l~~~la~LH~ 132 (304)
T 3sg8_A 101 VPLTPLLL-----NNLPKQSQNQAAKDLARFLSELHS 132 (304)
T ss_dssp EECCHHHH-----HTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eECCcccc-----ccCCHHHHHHHHHHHHHHHHHHHc
Confidence 7 32111 126777888899999999999995
|
| >2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.86 E-value=0.21 Score=31.49 Aligned_cols=27 Identities=7% Similarity=0.116 Sum_probs=11.4
Q ss_pred eEeehHH-HHHHHHHHHHHhhhhhcccc
Q 007553 422 LVTIILP-MVAFLALIFGILFVHRRMDE 448 (599)
Q Consensus 422 ~~~~~~~-~~~~~~~~~~~~~~~rr~~~ 448 (599)
+++++++ +++++++++.++++.||++.
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 3344443 33333344444444444443
|
| >2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A | Back alignment and structure |
|---|
Probab=88.37 E-value=0.19 Score=31.64 Aligned_cols=28 Identities=7% Similarity=0.207 Sum_probs=12.4
Q ss_pred ceEeehHHHHHHHHHHHHHhhhhhcccc
Q 007553 421 PLVTIILPMVAFLALIFGILFVHRRMDE 448 (599)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 448 (599)
.++++++++++++.+.+++.+|.||++.
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHhheehhhh
Confidence 3444455544333344444444444443
|
| >3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A* | Back alignment and structure |
|---|
Probab=85.07 E-value=1.9 Score=41.08 Aligned_cols=89 Identities=7% Similarity=-0.136 Sum_probs=58.2
Q ss_pred ceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccc------cC------CCCCCcceeecccccc-
Q 007553 489 YCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRH------YN------SHTDNDDSSDEHLANN- 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H------~n------~~~~~~~lv~e~~~~G- 553 (599)
..++.|....||+. |..++||.-.. ......+..|..+ .+.+ |. ...+..++||||++|.
T Consensus 25 ~~l~~G~~n~v~~v----g~~~VlR~~~~-~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~ 99 (306)
T 3tdw_A 25 ESLGEGFRNYAILV----NGDWVFRFPKS-QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQI 99 (306)
T ss_dssp EEEEECSSEEEEEE----TTTEEEEEESS-HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEE
T ss_pred eecCCCcceeEEEE----CCEEEEEecCC-chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeE
Confidence 44677888889977 55677777432 2223456677776 4433 22 1233467999999877
Q ss_pred -cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhC
Q 007553 554 -EHFLSAPENYERVDFSPDFSIADQSKKGFKLLAD 587 (599)
Q Consensus 554 -~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~ 587 (599)
.+..- ..++..++..++.++++.|+-||.
T Consensus 100 l~~~~~-----~~l~~~~~~~~~~~lg~~La~LH~ 129 (306)
T 3tdw_A 100 LGEDGM-----AVLPDDAKDRLALQLAEFMNELSA 129 (306)
T ss_dssp CHHHHH-----TTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cchhhh-----hhCCHHHHHHHHHHHHHHHHHHhc
Confidence 32111 125677889999999999999995
|
| >2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A* | Back alignment and structure |
|---|
Probab=85.03 E-value=1.3 Score=44.24 Aligned_cols=65 Identities=18% Similarity=0.055 Sum_probs=39.6
Q ss_pred ceecccCCceEEEEEeC-CCCEEEEEEecCCch--------hhHHHHHHhhc--ccc------ccC---CCCCCcceeec
Q 007553 489 YCIGTGGYGSVYRAQLS-SGRVVALKKLHRSET--------EELAFLETSST--DFR------HYN---SHTDNDDSSDE 548 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~--------~~~~f~~e~~~--~l~------H~n---~~~~~~~lv~e 548 (599)
..+|.|.++.||++... ++..++||....... ....+..|.++ .+. -|. .+.+..++|||
T Consensus 36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d~~~~~lvmE 115 (397)
T 2olc_A 36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDTEMAVTVME 115 (397)
T ss_dssp EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEETTTTEEEEC
T ss_pred EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEcCCccEEEEE
Confidence 46899999999999754 468899997643211 11234445554 221 222 34556789999
Q ss_pred ccccc
Q 007553 549 HLANN 553 (599)
Q Consensus 549 ~~~~G 553 (599)
|+++.
T Consensus 116 ~l~g~ 120 (397)
T 2olc_A 116 DLSHL 120 (397)
T ss_dssp CCTTS
T ss_pred eCCCc
Confidence 99865
|
| >3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX} | Back alignment and structure |
|---|
Probab=82.09 E-value=1.1 Score=42.27 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=46.4
Q ss_pred ccccceecccCCceEEEEEeCCCCEEEEEEecCCchh-hHHHHHHhhc--c------ccccC-CCCCCcceeecccccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE-ELAFLETSST--D------FRHYN-SHTDNDDSSDEHLANN 553 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~-~~~f~~e~~~--~------l~H~n-~~~~~~~lv~e~~~~G 553 (599)
+.....+|.|..+.||+.++.||+.|.||+-...... ...|..|.+. . ...|. ...+.-++||||++.+
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~~~~lv~e~l~~~ 95 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWDDRTLAMEWVDER 95 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEETTEEEEECCCCC
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEeccCceEEEEeeccc
Confidence 4444568999999999999999999999986543222 2345666654 2 22333 2234457899999876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 599 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-26 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-25 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-22 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-21 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-14 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 9e-23 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-20 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-18 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-22 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-22 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-21 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-17 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-21 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 8e-20 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-18 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-16 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 8e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-14 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-11 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-11 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-10 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 9e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-10 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-09 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 6e-09 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 2e-07 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 9e-07 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 2e-08 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 2e-08 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-08 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-08 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 7e-08 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 6e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-05 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 4e-08 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 5e-08 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-07 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 8e-06 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 1e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 8e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.002 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 4e-07 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 7e-06 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 1e-05 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 4e-07 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 4e-07 | |
| d3bqca1 | 328 | d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu | 5e-07 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 5e-07 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 6e-07 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 7e-07 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 8e-07 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 1e-06 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 1e-06 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-06 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 3e-06 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 0.004 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 2e-06 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 2e-06 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 9e-06 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 2e-05 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 2e-05 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 2e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 2e-04 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 2e-06 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 2e-06 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 2e-06 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 2e-05 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 2e-04 | |
| d1rdqe_ | 350 | d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni | 3e-06 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 3e-06 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 4e-06 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 4e-06 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 3e-05 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.002 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.004 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 7e-06 | |
| d1phka_ | 277 | d.144.1.7 (A:) gamma-subunit of glycogen phosphory | 7e-06 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 7e-06 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 9e-06 | |
| d1o6la_ | 337 | d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap | 9e-06 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 1e-05 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 1e-05 | |
| d1unla_ | 292 | d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H | 1e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 2e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.001 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.003 | |
| d1omwa3 | 364 | d.144.1.7 (A:186-549) G-protein coupled receptor k | 1e-05 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 1e-05 | |
| d2gfsa1 | 348 | d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa | 2e-05 | |
| d1zara2 | 191 | d.144.1.9 (A:91-281) Rio2 serine protein kinase C- | 2e-05 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 2e-05 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 2e-05 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 2e-05 | |
| d1cm8a_ | 346 | d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s | 3e-05 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 3e-05 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 3e-05 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 3e-05 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 3e-05 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 3e-05 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 3e-05 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 4e-05 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 4e-05 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 5e-05 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 6e-05 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 6e-05 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 6e-05 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 6e-05 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 7e-05 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 7e-05 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 8e-05 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 1e-04 | |
| d3blha1 | 318 | d.144.1.7 (A:8-325) Cell division protein kinase 9 | 1e-04 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 1e-04 | |
| d1q8ya_ | 362 | d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces | 2e-04 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 2e-04 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 3e-04 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 4e-04 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 4e-04 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 5e-04 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 6e-04 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 7e-04 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 7e-04 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 0.002 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 0.003 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 108 bits (269), Expect = 1e-26
Identities = 60/271 (22%), Positives = 109/271 (40%), Gaps = 12/271 (4%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
+LDL N++T + +L++L L L N ++ P F L L L L N+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163
L L L L + + ++ + + N +V L + +G +
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 164 NQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNR 223
+LS + +A N+ G +L L L+ N +T +++ LN L +L LS N
Sbjct: 150 KKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206
Query: 224 LDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG------PIP 277
+ ++ N +L L L++N+L +P + + KY+ + L NN+ P
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265
Query: 278 PTIGYLTNLTSLNLGYNQLN-SSIPPELMNC 307
+ + ++L N + I P C
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 104 bits (259), Expect = 2e-25
Identities = 55/269 (20%), Positives = 98/269 (36%), Gaps = 13/269 (4%)
Query: 83 SIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL 142
+P + D L LQ NK+ + NL NL L L N++S P L L
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 143 VSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTG 202
L+L N L L +L + + + + ++ L N +G
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSG 140
Query: 203 PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYL 262
+ L +R++ + IP G LT L L N+++ + + L L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197
Query: 263 DSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322
L L N++ ++ +L L+L N+L +P L + +Q + +++N++S
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256
Query: 323 ------SIPSEIGNLIHLRQLDLSHNFIN 345
P + L N +
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 95.9 bits (237), Expect = 2e-22
Identities = 61/274 (22%), Positives = 108/274 (39%), Gaps = 9/274 (3%)
Query: 117 NLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176
+L + S L ++P+++ + L L NN +T +L L TL L N +
Sbjct: 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67
Query: 177 VGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLT 236
P L L+ L L++N L L L ++ + + +
Sbjct: 68 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127
Query: 237 YLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQL 296
+ L + + SG+ +K L + + N+ IP G +LT L+L N++
Sbjct: 128 VV-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKI 183
Query: 297 NSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIP 356
L + L L ++ NS+S + N HLR+L L++N + +P L
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 242
Query: 357 NVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLE 390
+ V + NN+S I + F PG + +
Sbjct: 243 YIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYS 275
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 91.3 bits (225), Expect = 6e-21
Identities = 57/270 (21%), Positives = 104/270 (38%), Gaps = 17/270 (6%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
++ + L L L L N+++ P L L L LS N L L
Sbjct: 43 ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 102
Query: 92 KDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDL--SLNQLSGRLPQEVGNLKNLVSLFLDN 149
++L N++ + S L + ++L + + SG +K L + + +
Sbjct: 103 QELRVH---ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159
Query: 150 NNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIG 209
N+T IP L L+ L+L N + + L NL L L+ N+++ ++
Sbjct: 160 TNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 216
Query: 210 FLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL------LPREVGNLKYLD 263
L EL L++N+L +P + + Y+ + L +N +S + P
Sbjct: 217 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275
Query: 264 SLSLDRNNL-IGPIPP-TIGYLTNLTSLNL 291
+SL N + I P T + ++ L
Sbjct: 276 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.8 bits (172), Expect = 5e-14
Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 4/181 (2%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273
L ++ S L+ +P + LDL +N+++ + + NLK L +L L N +
Sbjct: 12 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 274 GPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIH 333
P L L L L NQL +L+ + S+ + + +I
Sbjct: 69 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128
Query: 334 LRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVEN 393
+ +L + +G + +S + ++ N++ + + L N + +
Sbjct: 129 V-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 187
Query: 394 P 394
Sbjct: 188 A 188
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.4 bits (238), Expect = 9e-23
Identities = 60/252 (23%), Positives = 87/252 (34%), Gaps = 5/252 (1%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
+ + L NR++ + + R+L L L N+L F L L L L N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 106 GLI-PSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLN 164
+ P++ L L L L L P L L L+L +N L T L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 165 QLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRL 224
L+ L+L N + + L +LD LLL++N + P L L L L N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 225 DGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLT 284
+ L L L L+ N R +L + + +P L
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQR---LA 269
Query: 285 NLTSLNLGYNQL 296
L N L
Sbjct: 270 GRDLKRLAANDL 281
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 4e-20
Identities = 55/273 (20%), Positives = 92/273 (33%), Gaps = 5/273 (1%)
Query: 119 THLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG 178
L +P + +FL N ++ ++ L+ L+L N L
Sbjct: 14 VTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70
Query: 179 PLPKEVGNLKNLDSLLLNRNNLTGPI-PSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTY 237
L L+ L L+ N + P+T L L L L L P L
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
Query: 238 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLN 297
L L L N L L +L L L L N + L +L L L N++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 298 SSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPN 357
P + +L L + N+LS + L L+ L L+ N +
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAW 249
Query: 358 VSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLE 390
+ + S + + +P+ + + + N+L+
Sbjct: 250 LQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.5 bits (207), Expect = 1e-18
Identities = 60/242 (24%), Positives = 88/242 (36%), Gaps = 4/242 (1%)
Query: 9 ELSQLNFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLR 68
+ +F NL + + TG ++ +L P+ L
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL 128
L L+L L P F L L L LQ N L L + +L NLTHL L N++
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 129 SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLK 188
S + L +L L L N + P L +L TLYL NNL + + L+
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225
Query: 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQL 248
L L LN N + L + R S + + +P + L++N L
Sbjct: 226 ALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAANDL 281
Query: 249 SG 250
G
Sbjct: 282 QG 283
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 98.2 bits (243), Expect = 1e-22
Identities = 79/335 (23%), Positives = 130/335 (38%), Gaps = 47/335 (14%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
L+ L ++ S N+LT P + +L L+++ ++ N + PL L
Sbjct: 63 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120
Query: 101 GNKLDGLIP------------SSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLD 148
+ ++I +++ L+ L G ++ L NL +L
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180
Query: 149 NNNLTGPIPSTLY-HLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPST 207
+ + ++ L L +L N + P L NLD L LN N L T
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGT 236
Query: 208 IGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLP-------------- 253
+ L L +L L++N++ P + LT LT L L +NQ+S + P
Sbjct: 237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 294
Query: 254 ------REVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNC 307
+ NLK L L+L NN+ P + LT L L N++ S L N
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANL 350
Query: 308 SQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
+ + L+ HN +S P + NL + QL L+
Sbjct: 351 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 97.8 bits (242), Expect = 1e-22
Identities = 79/357 (22%), Positives = 137/357 (38%), Gaps = 49/357 (13%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L ++ L + + L +L ++N S N L P NL L D+ + N
Sbjct: 43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN 98
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG---------NLKNLVSLFLDNNNLT 153
++ + P + L + L + ++ +L +
Sbjct: 99 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 158
Query: 154 GPIPSTLYHLNQLSTL----YLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIG 209
+ + L L+ L L ++ + L NL+SL+ N ++ P
Sbjct: 159 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-- 216
Query: 210 FLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDR 269
L LDEL L+ N+L T+ +LT LT LDL++NQ+S L P + L L L L
Sbjct: 217 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272
Query: 270 NNLIGPIP--------------------PTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQ 309
N + P I L NLT L L +N ++ P + + ++
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK 330
Query: 310 LQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKN 366
LQ L +N +S S + NL ++ L HN I+ P L + ++++ ++
Sbjct: 331 LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 94.7 bits (234), Expect = 2e-21
Identities = 74/365 (20%), Positives = 137/365 (37%), Gaps = 73/365 (20%)
Query: 66 SLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125
+L + ++ L + ++ +L + L+ + + + L NLT ++ S
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75
Query: 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH----------------------- 162
NQL+ P + NL LV + ++NN + P
Sbjct: 76 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 163 ----------LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSL----LLNRNNLTGPIPSTI 208
++ +S L + +V +LK L +L L+ ++ S +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 209 GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 268
L L+ L ++N++ P I T L L L+ NQL + +L L L L
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249
Query: 269 RNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP--------------------PELMNCS 308
N + P + LT LT L LG NQ+++ P + N
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307
Query: 309 QLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNL 368
L L + N++S P + +L L++L ++N + + S L + N++ + N +
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQI 363
Query: 369 SGVIP 373
S + P
Sbjct: 364 SDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 80.8 bits (198), Expect = 5e-17
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 31/180 (17%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELN 74
NL + G + + +L+ L LDL+ N+++ P + L L EL
Sbjct: 215 LGILTNLDELSLNGNQL---KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 269
Query: 75 LSYNILNGSIPL--------------------EFGNLKDLYDLRLQGNKLDGLIPSSIGN 114
L N ++ PL NLK+L L L N + + P + +
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327
Query: 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYN 174
LT L L + N++S + NL N+ L +N ++ P L +L +++ L L
Sbjct: 328 LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 72.7 bits (177), Expect = 3e-14
Identities = 76/366 (20%), Positives = 122/366 (33%), Gaps = 76/366 (20%)
Query: 90 NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDN 149
L + L + + + +L +T L + V L NL + N
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75
Query: 150 NNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPS--- 206
N LT P L +L +L + + N + P +L N+ P+ +
Sbjct: 76 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 207 ----------------------------------TIGFLNLLDELRLSHNRLDGPIPPTI 232
NL RL + +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 233 GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG 292
LT L SL ++NQ+S + P L LD LSL+ N L T+ LTNLT L+L
Sbjct: 194 AKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP--------------------SEIGNLI 332
NQ+++ P L ++L L + N +S P S I NL
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307
Query: 333 HLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENNL 389
+L L L N I+ P + + + + + N +S S+ + + W N +
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363
Query: 390 EVENPV 395
P+
Sbjct: 364 SDLTPL 369
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 65.8 bits (159), Expect = 5e-12
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 6/113 (5%)
Query: 14 NFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLEL 73
N + L S L L L L +N ++ P + SL L L
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 334
Query: 74 NLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
+ N ++ NL ++ L N++ L P + NLT +T L L+
Sbjct: 335 FFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 91.7 bits (226), Expect = 5e-21
Identities = 73/269 (27%), Positives = 108/269 (40%), Gaps = 29/269 (10%)
Query: 38 SETGALSRLKVLDLSYNRLTG--TIPSEIGSLRDLLELNLSYNI-LNGSIPLEFGNLKDL 94
R+ LDLS L IPS + +L L L + L G IP L L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG 154
+ L + + G IP + + L LD S N LSG LP + +L NLV + D N ++G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 155 PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLL 214
IP + ++L T N + NL + L+RN L G G
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 215 DELR-----------------------LSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL 251
++ L +NR+ G +P + L +L SL++S N L G
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 252 LPREVGNLKYLDSLSLDRNNLI--GPIPP 278
+P + GNL+ D + N + P+P
Sbjct: 284 IP-QGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 88.3 bits (217), Expect = 8e-20
Identities = 64/268 (23%), Positives = 108/268 (40%), Gaps = 7/268 (2%)
Query: 105 DGLIPSSIGNLTNLTHLDLSLNQLSGR--LPQEVGNLKNLVSLFLDNN-NLTGPIPSTLY 161
G++ + + +LDLS L +P + NL L L++ NL GPIP +
Sbjct: 39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 162 HLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSH 221
L QL LY+ + N+ G +P + +K L +L + N L+G +P +I L L +
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 222 NRLDGPIPPTIGNLTYLTS-LDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI 280
NR+ G IP + G+ + L + + +S N+L+G +P NL
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218
Query: 281 GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLS 340
+ L +L +N + G++P + L L L++S
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL--RNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 341 HNFINGTIPSQLGKIPNVSEVDVSKNNL 368
N + G IP G + + N
Sbjct: 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 83.3 bits (204), Expect = 4e-18
Identities = 70/272 (25%), Positives = 107/272 (39%), Gaps = 5/272 (1%)
Query: 57 TGTIPSEIGSLRDLLELNLSYNILNG--SIPLEFGNLKDLYDLRLQGN-KLDGLIPSSIG 113
G + + L+LS L IP NL L L + G L G IP +I
Sbjct: 39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 114 NLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAY 173
LT L +L ++ +SG +P + +K LV+L N L+G +P ++ L L +
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 174 NNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIG 233
N + G +P G+ L + + N L + LS N L+G G
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218
Query: 234 NLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGY 293
+ T + +VG K L+ L L N + G +P + L L SLN+ +
Sbjct: 219 SDKN-TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 294 NQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325
N L IP + N + A +N P
Sbjct: 278 NNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 76.7 bits (187), Expect = 6e-16
Identities = 70/242 (28%), Positives = 110/242 (45%), Gaps = 4/242 (1%)
Query: 137 GNLKNLVSLFLDNNNLTG--PIPSTLYHLNQLSTLYLAYN-NLVGPLPKEVGNLKNLDSL 193
+ +L L NL PIPS+L +L L+ LY+ NLVGP+P + L L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 194 LLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLP 253
+ N++G IP + + L L S+N L G +PP+I +L L + N++SG +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 254 REVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNL 313
G+ L + N + P NL ++L N L + Q +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 314 AVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373
+ NSL+ + + DL +N I GT+P L ++ + ++VS NNL G IP
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGL-DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 374 KS 375
+
Sbjct: 286 QG 287
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 58.2 bits (139), Expect = 8e-10
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 10/259 (3%)
Query: 162 HLNQLSTLYLAYNNLVG--PLPKEVGNLKNLDSLLLNRN-NLTGPIPSTIGFLNLLDELR 218
+++ L L+ NL P+P + NL L+ L + NL GPIP I L L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 219 LSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP 278
++H + G IP + + L +LD S N LSG LP + +L L ++ D N + G IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 279 TIGYLTNLTS-LNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQL 337
+ G + L + + + N+L IPP N + + S + Q
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML--EGDASVLFGSDKNTQK 225
Query: 338 DLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENNLEVENP 394
++G N++ +D+ N + G +P+ + ++ L S NNL E P
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 395 VISENAPPPQTQHFKGNKG 413
N + NK
Sbjct: 286 QGG-NLQRFDVSAYANNKC 303
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.3 bits (173), Expect = 2e-14
Identities = 52/211 (24%), Positives = 80/211 (37%), Gaps = 7/211 (3%)
Query: 63 EIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLD 122
E+ + LE+N L ++P + KD L L N L +++ T LT L+
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 123 LSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPK 182
L + Q G L L +L L +N L L L+ L +++N L
Sbjct: 62 LDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLG 118
Query: 183 EVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLD 242
+ L L L L N L P + L++L L++N L + L L +L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273
L N L +P+ L L N +
Sbjct: 179 LQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 1e-09
Identities = 46/209 (22%), Positives = 74/209 (35%), Gaps = 29/209 (13%)
Query: 183 EVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLD 242
EV + + + ++ NLT +P + L LS N L T+ T LT L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNN-----------------------LIGPIPPT 279
L +L+ + G L L +L L N L
Sbjct: 62 LDRAELTK--LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339
+ L L L L N+L + P L +L+ L++ +N+L+ + L +L L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 340 SHNFINGTIPSQLGKIPNVSEVDVSKNNL 368
N + TIP + + N
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (134), Expect = 2e-09
Identities = 52/190 (27%), Positives = 72/190 (37%), Gaps = 6/190 (3%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
+P + +L LS N L + + L +LNL + G L L
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA--ELTKLQVDGTLPVLG 80
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGP 155
+ +P L LT LD+S N+L+ + L L L+L N L
Sbjct: 81 -TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 156 IPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLD 215
P L +L L LA NNL + L+NLD+LLL N+L IP +LL
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198
Query: 216 ELRLSHNRLD 225
L N
Sbjct: 199 FAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 51/200 (25%)
Query: 231 TIGNLTYLTSLDLSSNQLSGLLPREVG-NLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSL 289
+ + ++ L+ L P ++ + L L N L T+ T LT L
Sbjct: 5 EVSKVASHLEVNCDKRNLTAL-PPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQL 60
Query: 290 NLGYNQ---------------------------------------------LNSSIPPEL 304
NL + L S L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 305 MNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVS 364
+LQ L + N L P + L +L L++N + L + N+ + +
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
Query: 365 KNNLSGVIPKSVFRVPGLKW 384
+N+L IPK F L +
Sbjct: 181 ENSLY-TIPKGFFGSHLLPF 199
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (153), Expect = 1e-11
Identities = 42/270 (15%), Positives = 86/270 (31%), Gaps = 16/270 (5%)
Query: 49 LDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKL-DGL 107
LDL+ L + + S + ++ + ++ + F + + + L + +
Sbjct: 5 LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP--------ST 159
+ + + L +L L +LS + + NLV L L + S
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 160 LYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRL 219
L LN ++ + + L+ +N + + + L L L
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 220 SHNRL-DGPIPPTIGNLTYLTSLDLSS-NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIP 277
S + + L YL L LS + E+G + L +L + G +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
Query: 278 PTIGYLTNLTSLNLGYNQLNSSIPPELMNC 307
L L + + + P + N
Sbjct: 243 LLK---EALPHLQINCSHFTTIARPTIGNK 269
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.2 bits (152), Expect = 1e-11
Identities = 37/269 (13%), Positives = 99/269 (36%), Gaps = 16/269 (5%)
Query: 119 THLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL-V 177
LDL+ L + + + +++ + + P+ ++ + L+ + + V
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60
Query: 178 GPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDEL--RLSHNRLDGPIPPTIGNL 235
L + L +L L L+ PI +T+ + L L + + + +
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 236 TYLTSLDL------SSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSL 289
+ L L+L + + + + L+ +N + + NL L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 290 NLGYNQLNS-SIPPELMNCSQLQNLAVNH-NSLSGSIPSEIGNLIHLRQLDLSHNFINGT 347
+L + + E + LQ+L+++ + E+G + L+ L + +GT
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 348 IPSQLGKIPNVSEVDVSKNNLSGVIPKSV 376
+ +P+ + ++ ++ + + ++
Sbjct: 241 LQLLKEALPH---LQINCSHFTTIARPTI 266
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (144), Expect = 1e-10
Identities = 50/279 (17%), Positives = 87/279 (31%), Gaps = 17/279 (6%)
Query: 27 WGTRFLSGR--IPSETGALSRLKVLDLSYNRL-TGTIPSEIGSLRDLLELNLSYN-ILNG 82
W T L+G+ P TG L V+ R +E S + ++LS + I
Sbjct: 2 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 83 SIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL 142
++ L +L L+G +L I +++ +NL L+LS +
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 143 VSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG---------PLPKEVGNLKNLDSL 193
L+ + + + + NL G +
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181
Query: 194 LLNRNNLTGPIPSTIGFLNLLDELRLSH-NRLDGPIPPTIGNLTYLTSLDLSSNQLSGLL 252
L + L LN L L LS + +G + L +L + G L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241
Query: 253 PREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNL 291
L +L ++ ++ PTIG N +
Sbjct: 242 QLLKEALPHLQ---INCSHFTTIARPTIGNKKNQEIWGI 277
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 9e-09
Identities = 41/283 (14%), Positives = 80/283 (28%), Gaps = 22/283 (7%)
Query: 73 LNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR- 131
L+L+ L+ + + + R + +D + + + H+DLS + +
Sbjct: 5 LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVST 62
Query: 132 LPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLD 191
L + L +L L+ L+ PI +TL + L L L+ + +
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 192 SLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL 251
LN + + ++ L G +
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-------------- 168
Query: 252 LPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGY-NQLNSSIPPELMNCSQL 310
+ D L L L L+L + EL L
Sbjct: 169 -TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227
Query: 311 QNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLG 353
+ L V G++ L HL+ ++ + +G
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIG 267
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 287 TSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFING 346
+L+L L+ + L++ + + + + E + ++ +DLS++ I
Sbjct: 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEV 60
Query: 347 -TIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW 384
T+ L + + + + LS I ++ + L
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.7 bits (131), Expect = 7e-10
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDG 106
+VL L++ LT + + L + L+LS+N L P L+ L L+ N L+
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57
Query: 107 LIPSSIGNLTNLTHLDLSLNQL-SGRLPQEVGNLKNLVSLFLDNNNLTGP---IPSTLYH 162
+ + NL L L L N+L Q + + LV L L N+L
Sbjct: 58 V--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Query: 163 LNQLSTL 169
L +S++
Sbjct: 116 LPSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.5 bits (120), Expect = 3e-08
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
L L L L + L +THLDLS N+L P + L+ L L ++
Sbjct: 3 LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALEN 57
Query: 157 PSTLYHLNQLSTLYLAYNNLVG-PLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLD 215
+ +L +L L L N L + + + L L L N+L +L
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 216 ELR 218
+
Sbjct: 118 SVS 120
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.3 bits (117), Expect = 6e-08
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 145 LFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPI 204
L L + +LT + L L ++ L L++N L P + L+ L+ L + N L
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59
Query: 205 PSTIGFLNLLDELRLSHNRL-DGPIPPTIGNLTYLTSLDLSSNQLSGL 251
L L EL L +NRL + + L L+L N L
Sbjct: 60 GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.0 bits (111), Expect = 4e-07
Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 241 LDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI 300
L L+ L+ L + L + L L N L PP + L L L +
Sbjct: 3 LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQ--ASDNALEN 57
Query: 301 PPELMNCSQLQNLAVNHNSL-SGSIPSEIGNLIHLRQLDLSHN---FINGTIPSQLGKIP 356
+ N +LQ L + +N L + + + L L+L N G +P
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 357 NVSEV 361
+VS +
Sbjct: 118 SVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
+ L + LDLS+NRL P+ + +LR L L + NL L
Sbjct: 12 VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQ--ASDNALENVDGVANLPRLQ 68
Query: 96 DLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSG------RLPQEVGNLKNLVS 144
+L L N+L + + L L+L N L RL + + ++ ++++
Sbjct: 69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 124
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.2 bits (101), Expect = 1e-05
Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 6/122 (4%)
Query: 193 LLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLL 252
L L +LT + + L L+ L LSHNRL PP + L L L S N L +
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD 59
Query: 253 PREVGNLKYLDSLSLDRNNLIG-PIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQ 311
L L L N L + L LNL N L + L
Sbjct: 60 GVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 312 NL 313
++
Sbjct: 118 SV 119
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.9 bits (135), Expect = 3e-09
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 238 LTSLDLSSNQLSGL-LPREVGNLKYLDSLSLDRNNL----IGPIPPTIGYLTNLTSLNLG 292
+ SLD+ +LS + L+ + LD L I + L LNL
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322
N+L ++ Q + + SL
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.1 bits (133), Expect = 7e-09
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 117 NLTHLDLSLNQLS-GRLPQEVGNLKNLVSLFLDNNNLTG----PIPSTLYHLNQLSTLYL 171
++ LD+ +LS R + + L+ + LD+ LT I S L L+ L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 172 AYNNLVGPLPKEVGNLKNLDSLLLNRNNLTG 202
N L V S + + +L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (124), Expect = 7e-08
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 285 NLTSLNLGYNQLNSSIPPELM-NCSQLQNLAVNHNSLSG----SIPSEIGNLIHLRQLDL 339
++ SL++ +L+ + EL+ Q Q + ++ L+ I S + L +L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 340 SHNFINGTIPSQLGKIPNVSEVDVSKNNLSG 370
N + + + + K +L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (123), Expect = 1e-07
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 5/99 (5%)
Query: 69 DLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQGNKLDG----LIPSSIGNLTNLTHLDL 123
D+ L++ L+ + E L+ +RL L I S++ L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 124 SLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
N+L V S + +L +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (120), Expect = 3e-07
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 284 TNLTSLNLGYNQLN----SSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLI-----HL 334
+ L L L ++ SS+ L+ L+ L +++N L + ++ + L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 335 RQLDLSHNFINGTIPSQLGKI 355
QL L + + + +L +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (114), Expect = 1e-06
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 93 DLYDLRLQGNKL-DGLIPSSIGNLTNLTHLDLSLNQLSGR----LPQEVGNLKNLVSLFL 147
D+ L +Q +L D + L + L L+ + + L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 148 DNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176
+N L + Q + + +L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 189 NLDSLLLNRNNLT-GPIPSTIGFLNLLDELRLSHNRLDG----PIPPTIGNLTYLTSLDL 243
++ SL + L+ + L +RL L I + L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 244 SSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
SN+L + V S + + +L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (110), Expect = 4e-06
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 166 LSTLYLAYNNLV-GPLPKEVGNLKNLDSLLLNRNNLTG----PIPSTIGFLNLLDELRLS 220
+ +L + L + + L+ + L+ LT I S + L EL L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 221 HNRLDGPIPPTIG-----NLTYLTSLDLSSNQ 247
N L + + L L +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (107), Expect = 1e-05
Identities = 13/92 (14%), Positives = 24/92 (26%), Gaps = 10/92 (10%)
Query: 214 LDELRLSHNRL-DGPIPPTIGNLTYLTSLDLSSNQLSG----LLPREVGNLKYLDSLSLD 268
+ L + L D + L + L L+ + + L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 269 RNNLIGPIPPTIGYL-----TNLTSLNLGYNQ 295
N L + + L+L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (106), Expect = 1e-05
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 9/87 (10%)
Query: 88 FGNLKDLYDLRLQGNKLDGL----IPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----N 138
L L L + + +++ +L LDLS N L ++
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 139 LKNLVSLFLDNNNLTGPIPSTLYHLNQ 165
L L L + + + L L +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEK 451
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (106), Expect = 1e-05
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 258 NLKYLDSLSLDRNNL----IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM-----NCS 308
L L L ++ + T+ +L L+L N L + +L+
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 309 QLQNLAVNHNSLSGSIPSEIGNLI----HLRQL 337
L+ L + S + + L LR +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (105), Expect = 1e-05
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 20 NLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTG----TIPSEIGSLRDLLELNL 75
++ + I R L + +V+ L LT I S + L ELNL
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 76 SYNILNGSIPLEFGNLKDLYDLRLQ 100
N L ++Q
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQ 87
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 6e-05
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 304 LMNCSQLQNLAVNHNSLSG----SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKI---- 355
S L+ L + +S S+ + + LR+LDLS+N + QL +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 356 -PNVSEVDVSKNNLSGVIPKSV 376
+ ++ + S + +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 1e-04
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 186 NLKNLDSLLLNRNNLTG----PIPSTIGFLNLLDELRLSHNRLDGPIPPTIG-----NLT 236
L L L +++ + +T+ + L EL LS+N L +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 237 YLTSLDLSSNQLSGLLPREVGNLK 260
L L L S + + L+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 1e-04
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 29/114 (25%)
Query: 212 NLLDELRLSHNRLDG----PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
++L L L+ + + T+ L LDLS+N L ++ S+
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE-------SV 421
Query: 268 DRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLS 321
+ L L L + + +LQ L + SL
Sbjct: 422 RQPG------------CLLEQLVLYDIYWSEEME------DRLQALEKDKPSLR 457
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 6e-04
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 138 NLKNLVSLFLDNNNLTG----PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVG-----NLK 188
L L+L + +++ + +TL + L L L+ N L ++
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 189 NLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD 225
L+ L+L + + + L L L
Sbjct: 427 LLEQLVLYDIYWSEEME------DRLQALEKDKPSLR 457
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 56.0 bits (133), Expect = 6e-09
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 17 CFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLS 76
+ + ++ S I S L+ L++S N+L +P+ L L S
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIAS 312
Query: 77 YNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNL 118
+N L +P NLK L+ ++ N L P ++ +L
Sbjct: 313 FNHLA-EVPELPQNLKQLH---VEYNPLREF-PDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 54.1 bits (128), Expect = 2e-08
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 267 LDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPS 326
N I +L LN+ N+L +P +L+ L + N L+ +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALP---PRLERLIASFNHLA-EVPE 321
Query: 327 EIGNLIHLRQLDLSHNFINGTIPSQLGKIPN 357
NL +QL + +N + P + +
Sbjct: 322 LPQNL---KQLHVEYNPLR-EFPDIPESVED 348
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 53.7 bits (127), Expect = 2e-08
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 219 LSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP 278
N I L L++S+N+L LP L+ L S N + +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLI-AS---FNHLAEVPE 321
Query: 279 TIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVN 316
NL L++ YN L P +++L +N
Sbjct: 322 LPQ---NLKQLHVEYNPL-REFPDIP---ESVEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 50.6 bits (119), Expect = 3e-07
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 195 LNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPR 254
N + I S L+EL +S+N+L +P L L S N L+ +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLER---LIASFNHLAE-VPE 321
Query: 255 EVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNL 286
NLK L ++ N L P + +L
Sbjct: 322 LPQNLKQLH---VEYNPLRE-FPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 49.8 bits (117), Expect = 5e-07
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 74 NLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 133
N + I L +L + NKL +P+ L L S N L+ +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLE---RLIASFNHLA-EVP 320
Query: 134 QEVGNLKNLVSLFLDNNNLTG--PIPSTLYHLN 164
+ NLK L ++ N L IP ++ L
Sbjct: 321 ELPQNLK---QLHVEYNPLREFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 49.1 bits (115), Expect = 9e-07
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 14 NFTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLEL 73
P+L + + + +P+ RL+ L S+N L +P +L+ +L
Sbjct: 279 LCDLPPSLEELNVSNNKLIE--LPAL---PPRLERLIASFNHLA-EVPELPQNLK---QL 329
Query: 74 NLSYNILNGSIPLEFGNLKDLY 95
++ YN L P +++DL
Sbjct: 330 HVEYNPLR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 120 HLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGP 179
LN S + +L L + NN L +P+ +L L ++N+L
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE- 318
Query: 180 LPKEVGNLKNLDSLLLNRNNLTG--PIPSTIGFLNL 213
+P+ NLK L + N L IP ++ L +
Sbjct: 319 VPELPQNLKQLH---VEYNPLREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 45.6 bits (106), Expect = 9e-06
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 290 NLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIP 349
N ++ I L+ L V++N L +P+ L +L S N + +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVP 320
Query: 350 SQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLK 383
N+ ++ V N L P V L+
Sbjct: 321 ELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.9 bits (99), Expect = 6e-05
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
+ L+L+ L+ ++P L L S N L +P +LK L
Sbjct: 38 RQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92
Query: 104 LDGLIPS 110
L L P
Sbjct: 93 LSDLPPL 99
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 4e-04
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 284 TNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNF 343
L L L SS+P L++L + NSL+ +P +L L + +
Sbjct: 38 RQAHELELNNLGL-SSLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92
Query: 344 INGTIPS 350
++ P
Sbjct: 93 LSDLPPL 99
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.3 bits (87), Expect = 0.002
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273
EL L++ L +P +L SL S N L+ LP +LK L + + L
Sbjct: 40 AHELELNNLGLSS-LPELPPHLE---SLVASCNSLTE-LPELPQSLKSLLVDNNNLKALS 94
Query: 274 GPIP 277
P
Sbjct: 95 DLPP 98
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 54.2 bits (129), Expect = 6e-09
Identities = 46/215 (21%), Positives = 76/215 (35%), Gaps = 22/215 (10%)
Query: 59 TIPSEIG------SLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSI 112
T+P+ I + + ++ NL + ++ L + + + + + I
Sbjct: 9 TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--I 64
Query: 113 GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLA 172
L N+T L L+ N+L+ + + NLKNL LFLD N + + +L
Sbjct: 65 QYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122
Query: 173 YNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI 232
+ + L + I L LS +
Sbjct: 123 GISDINGLVHLPQL--------ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL 174
Query: 233 GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
LT L +L LS N +S L R + LK LD L L
Sbjct: 175 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 207
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 49.6 bits (117), Expect = 2e-07
Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 22/194 (11%)
Query: 186 NLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS 245
L + ++T + T LN +D++ +++ + I L +T L L+
Sbjct: 22 AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 246 NQLSGLLPREVGNLKYLDSLSLDRN---------------NLIGPIPPTIGYLTNLTSLN 290
N+L+ + P L ++ +L I L +L L
Sbjct: 78 NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137
Query: 291 LGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPS 350
Y N +++ + ++ I + L L+ L LS N I +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHI--SDLR 194
Query: 351 QLGKIPNVSEVDVS 364
L + N+ +++
Sbjct: 195 ALAGLKNLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 47.7 bits (112), Expect = 9e-07
Identities = 36/191 (18%), Positives = 60/191 (31%), Gaps = 22/191 (11%)
Query: 138 NLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNR 197
+ L ++T + T LN + + +++ + L N+ L LN
Sbjct: 22 AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 198 NNLTGPIP---------------STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLD 242
N LT P +L D +L L+ I L +L L+
Sbjct: 78 NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137
Query: 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPP 302
+ + V + +N I I P + LT L +L L N ++
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LR 194
Query: 303 ELMNCSQLQNL 313
L L L
Sbjct: 195 ALAGLKNLDVL 205
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (128), Expect = 2e-08
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLE 527
+D +GTG +G V + VA+K + E F+E
Sbjct: 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE 48
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (128), Expect = 2e-08
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLE 527
E + +G G +G V+ + VA+K L + AFL
Sbjct: 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA 57
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 52.7 bits (125), Expect = 2e-08
Identities = 42/227 (18%), Positives = 75/227 (33%), Gaps = 18/227 (7%)
Query: 138 NLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNR 197
L N + + +N+T + T L+ ++TL + + V L NL L L
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 198 NNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVG 257
N +T P EL + + I T + ++ +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 258 NLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNH 317
L + + + L G S L N S+L L +
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLS----------IGNAQVSDLTPLANLSKLTTLKADD 182
Query: 318 NSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVS 364
N +S P + +L +L ++ L +N I+ P L N+ V ++
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 52.3 bits (124), Expect = 3e-08
Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 22/216 (10%)
Query: 66 SLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125
+L + +++ + + ++ +L + L G + + + L NL L+L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVG 185
NQ++ P + + L + I T + +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 186 NLKNLDSLLLNRNNLTGPI--------------PSTIGFLNLLDELRLSHNRLDGPIPPT 231
L + + N + L G + + L+ L L+ N++ P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 232 IGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
+ +L L + L +NQ+S + P + N L ++L
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 51.2 bits (121), Expect = 7e-08
Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 23/220 (10%)
Query: 90 NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDN 149
L + + + + + + +L +T L ++ + V L NL+ L L +
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72
Query: 150 NNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIG 209
N +T P L V + + + S +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 210 FLNLLDELRLSHNRLDGP--------------IPPTIGNLTYLTSLDLSSNQLSGLLPRE 255
L L + + L G + NL+ LT+L N++S + P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 256 VGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQ 295
+ +L L + L N + P + +NL + L NQ
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL-TNQ 227
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 45.4 bits (106), Expect = 6e-06
Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 20/202 (9%)
Query: 186 NLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS 245
L N + ++N+T + T L+ + L + + L L L+L
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 246 NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGY------------ 293
NQ++ L P + LS + + I T +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 294 --NQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQ 351
+ I ++ + S + + NL L L N I+ P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 352 LGKIPNVSEVDVSKNNLSGVIP 373
L +PN+ EV + N +S V P
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP 212
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 76 SYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE 135
S S NL L L+ NK+ + P + +L NL + L NQ+S P
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-- 212
Query: 136 VGNLKNLVSLFLDN 149
+ N NL + L N
Sbjct: 213 LANTSNLFIVTLTN 226
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (126), Expect = 4e-08
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLE 527
E ++ +G G +G V+ + VA+K L AFL+
Sbjct: 17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ 61
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (125), Expect = 5e-08
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLE 527
+ IG+G +G V+ + VA+K + E F+E
Sbjct: 5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE 49
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 4e-07
Identities = 46/236 (19%), Positives = 72/236 (30%), Gaps = 10/236 (4%)
Query: 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL--YDLRLQGNKL 104
+V +++T IPS++ R+ +EL L F DL ++
Sbjct: 11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
Query: 105 DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLN 164
N L P+ NL NL L + N + H
Sbjct: 68 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127
Query: 165 QLSTLYLAY--NNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHN 222
Q L + N VG L LN+N + L + +N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187
Query: 223 RLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP 278
L+ + LD+S ++ L + NLK L + S NL +P
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL-KKLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (105), Expect = 8e-06
Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 10/234 (4%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
Q +K+ IPS + N L L +L +L + + N++ I
Sbjct: 13 FLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69
Query: 157 PSTLYHLNQLSTLYLAY--NNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLL 214
+ ++ NNL+ P+ NL NL LL++ +
Sbjct: 70 EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129
Query: 215 DELRLSH--NRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
L + N +G L L+ N + + + + D NNL
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189
Query: 273 IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPS 326
+ L++ +++S L N +L+ + + +P+
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 1e-04
Identities = 32/238 (13%), Positives = 68/238 (28%), Gaps = 10/238 (4%)
Query: 117 NLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176
+ ++++ +P ++ +N + L L L + ++ N++
Sbjct: 9 SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65
Query: 177 VGPLPKEVGNLKNLDSLLLNR--NNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGN 234
+ + +V + + NNL P L L L +S+ + +
Sbjct: 66 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125
Query: 235 LTYLTSLDLSS--NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG 292
LD+ N + VG L L++N +
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPS 350
N L S L ++ + + NL LR + +P+
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 8e-04
Identities = 37/216 (17%), Positives = 66/216 (30%), Gaps = 6/216 (2%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IPS L +L DL ++ +S N + I + +
Sbjct: 23 IPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80
Query: 96 DLRLQG--NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDN--NN 151
N L + P + NL NL +L +S + + V L + + N
Sbjct: 81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFL 211
T S + + L+L N + + + L + NNL
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQ 247
+ L +S R+ + NL L + + +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.002
Identities = 34/224 (15%), Positives = 65/224 (29%), Gaps = 9/224 (4%)
Query: 83 SIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL 142
IP + ++ +LR KL + + +L +++S N + + +V +
Sbjct: 22 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79
Query: 143 VSLFLDN--NNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNR--N 198
+ NNL P +L L L ++ + + L + N
Sbjct: 80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139
Query: 199 NLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGN 258
T S +G L L+ N + +N L L
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199
Query: 259 LKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPP 302
L + R + + L L + + L +P
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL-KKLPT 240
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 4e-07
Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 9/143 (6%)
Query: 204 IPSTIGFLNLLD--ELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKY 261
I + N + EL L ++ I L ++D S N++ L L+
Sbjct: 8 IEQAAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFP--LLRR 64
Query: 262 LDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPE----LMNCSQLQNLAVNH 317
L +L ++ N + L +LT L L N L + L + + L L
Sbjct: 65 LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124
Query: 318 NSLSGSIPSEIGNLIHLRQLDLS 340
+ I + +R LD
Sbjct: 125 TNKKHYRLYVIYKVPQVRVLDFQ 147
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 7e-06
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 4/128 (3%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
R + LDL ++ I + +L ++ S N + F L+ L L + N
Sbjct: 17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNN 73
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSG-RLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
++ + L +LT L L+ N L + +LK+L L + N +T LY
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133
Query: 162 HLNQLSTL 169
+ ++ +
Sbjct: 134 VIYKVPQV 141
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 1e-05
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 75 LSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 134
L+ ++ + ++ N +L L+G K+ I + L +D S N++ R
Sbjct: 3 LTAELIEQA--AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLD 57
Query: 135 EVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG-PLPKEVGNLKNLDSL 193
L+ L +L ++NN + L L+ L L N+LV + +LK+L L
Sbjct: 58 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117
Query: 194 LLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDG 226
+ RN +T + + + ++R LD
Sbjct: 118 CILRNPVTNKKHYRLYVIYKVPQVR----VLDF 146
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.7 bits (118), Expect = 4e-07
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFL 526
D +K+ +G G YG VY VA+K L E FL
Sbjct: 17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFL 61
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (117), Expect = 4e-07
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
ED+ + Y IGTG YG + + S G+++ K+L E
Sbjct: 4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE 44
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Score = 49.8 bits (118), Expect = 5e-07
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 465 SIWDYDG-RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
WDY+ + + +D+ + +G G Y V+ A +++ V +K L + ++
Sbjct: 20 EYWDYESHVVEWGNQ----DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKK 75
Query: 523 L 523
+
Sbjct: 76 I 76
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 49.5 bits (117), Expect = 5e-07
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
E +H IG G YG VY+AQ + G ALKK+ + +E
Sbjct: 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE 41
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.4 bits (117), Expect = 6e-07
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 474 TFEEMIQATEDFH---------IKYCIGTGGYGSVYRAQL----SSGRVVALKKLHRSET 520
TFE+ +A +F I+ IG G +G V L VA+K L T
Sbjct: 8 TFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT 67
Query: 521 EE 522
E+
Sbjct: 68 EK 69
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.9 bits (116), Expect = 7e-07
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
+DF I +GTG +G V+ + +GR A+K L + L +E
Sbjct: 4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVE 49
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (115), Expect = 8e-07
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLET 528
EDF I +G G +G+VY A+ S ++ALK L +++ E+
Sbjct: 6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ 52
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (114), Expect = 1e-06
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSS-TDFRHYN 537
++ + IG G +G V G VA+K + T + E S T RH N
Sbjct: 7 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSN 61
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (114), Expect = 1e-06
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEEL 523
+DF +G G G V++ SG V+A K +H +
Sbjct: 4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAI 47
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 5/167 (2%)
Query: 44 SRLKVLDLSYNRLTGTIPSEI-GSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L L+ N L + G L L++L L N L G P F + +L+L N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH 162
K+ + L L L+L NQ+S +P +L +L SL L +N +
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-NCHLAWF 147
Query: 163 LNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIG 209
L L P +V +++ D L + ++ G
Sbjct: 148 AEWLRKKSLNGGAARCGAPSKVRDVQIKD---LPHSEFKCSSENSEG 191
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 46.0 bits (107), Expect = 3e-06
Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 8/187 (4%)
Query: 144 SLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNNLTG 202
++ L IP + + L L N L + G L +L L L RN LTG
Sbjct: 12 TVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68
Query: 203 PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYL 262
P+ + + EL+L N++ L L +L+L NQ+S ++P +L L
Sbjct: 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128
Query: 263 DSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322
SL+L N + L +L P ++ + +Q + H+
Sbjct: 129 TSLNLASNPFNC-NCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEFKC 184
Query: 323 SIPSEIG 329
S + G
Sbjct: 185 SSENSEG 191
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 36.7 bits (83), Expect = 0.004
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 4/120 (3%)
Query: 239 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLN 297
T++D + L + PR++ + L L+ N L + G L +L L L NQL
Sbjct: 11 TTVDCTGRGLKEI-PRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 298 SSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPN 357
P S +Q L + N + L L+ L+L N I+ +P + +
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 2e-06
Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 7/164 (4%)
Query: 50 DLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIP 109
+L ++ + + D + L L + L + + + +
Sbjct: 3 ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRR-SSMAATLR 58
Query: 110 SSIGNLTNLTHLDLSLNQLSGR--LPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLS 167
N+ L L+LS N+L + V NL L L N L +L
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 168 TLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTG-PIPSTIGF 210
L+L N+L + + + L G +P I F
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAF 162
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 2e-06
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
Query: 242 DLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP 301
+L Q+ L + +LD L P + LN + + +++
Sbjct: 3 ELKPEQVE-QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRR-SSMAATLR 58
Query: 302 PELMNCSQLQNLAVNHNSLSG--SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVS 359
N +L +L +++N L + S + +L+ L+LS N + K +
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 360 EVDVSKNNLSGVIP 373
E+ + N+LS
Sbjct: 119 ELWLDGNSLSDTFR 132
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 9e-06
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 5/147 (3%)
Query: 91 LKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDN 149
+ YD Q L GL + L+ + ++ L N+ L+SL L N
Sbjct: 16 MSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSN 74
Query: 150 NNLTG--PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPST 207
N L + S + L L L+ N L + L+ L L+ N+L+
Sbjct: 75 NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134
Query: 208 IGFLNLLDELRLSHNRLDG-PIPPTIG 233
+++ + E RLDG +PP I
Sbjct: 135 STYISAIRERFPKLLRLDGHELPPPIA 161
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 2e-05
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 14/133 (10%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
+ LDL R ++ + + LN ++ ++ + N+ +L L L N+L
Sbjct: 24 QQALDLKGLR----SDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY 78
Query: 106 GL--IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST---- 159
L + S + NL L+LS N+L + L L+LD N+L+
Sbjct: 79 RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138
Query: 160 ---LYHLNQLSTL 169
+L L
Sbjct: 139 SAIRERFPKLLRL 151
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 2e-05
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 12/144 (8%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL--LPREVGNLKY 261
+ + + L L P + L+ S+ + L + + L
Sbjct: 12 LKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLS 69
Query: 262 LDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLS 321
L+ LS +R + + + NL LNL N+L S + + +L+ L ++ NSLS
Sbjct: 70 LN-LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128
Query: 322 GSIPSE-------IGNLIHLRQLD 338
+ + L +LD
Sbjct: 129 DTFRDQSTYISAIRERFPKLLRLD 152
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 5/133 (3%)
Query: 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLT 287
+ + + L L ++ L+ R+++ + + L
Sbjct: 12 LKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNR-RSSMAATLRIIEENIPELL 68
Query: 288 SLNLGYNQL--NSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
SLNL N+L + + L+ L ++ N L + + L +L L N ++
Sbjct: 69 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128
Query: 346 GTIPSQLGKIPNV 358
T Q I +
Sbjct: 129 DTFRDQSTYISAI 141
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 6/124 (4%)
Query: 14 NFTCFPNLVTFRIWGT----RFLSGRIPSETGALSRLKVLDLSYNRLTGT--IPSEIGSL 67
P+LV I ++ + + L L+LS NRL + S +
Sbjct: 31 GLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 90
Query: 68 RDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQ 127
+L LNLS N L L+ L +L L GN L ++ + L +
Sbjct: 91 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLR 150
Query: 128 LSGR 131
L G
Sbjct: 151 LDGH 154
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (112), Expect = 2e-06
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
ED+ + +G G YG V A + VA+K + +
Sbjct: 5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD 45
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (112), Expect = 2e-06
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 480 QATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
+ EDF +G G + +V A+ L++ R A+K L + + +
Sbjct: 5 KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVP 53
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 46.6 bits (109), Expect = 2e-06
Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 16/199 (8%)
Query: 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
L + ++ L + ++ +L + L+ + + + L NLT ++ S N
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 72
Query: 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGN 186
QL+ L +L + L T +
Sbjct: 73 QLTDI--------TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 124
Query: 187 LKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSN 246
+ L ++ T S + L L +L S N++ P + NLT L LD+SSN
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 182
Query: 247 QLSGLLPREVGNLKYLDSL 265
++S + + L L+SL
Sbjct: 183 KVSDI--SVLAKLTNLESL 199
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 22/191 (11%)
Query: 138 NLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNR 197
L + L N+T + + L+Q++TL + V L NL + +
Sbjct: 16 ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 71
Query: 198 NNLTGPI---------------PSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLD 242
N LT L + L+ L I L LT+L+
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131
Query: 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPP 302
+ + + +N + + P + LT L L++ N+++
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD--IS 188
Query: 303 ELMNCSQLQNL 313
L + L++L
Sbjct: 189 VLAKLTNLESL 199
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 24/188 (12%)
Query: 186 NLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS 245
L +L + N+T + + L+ + L+ + + L LT ++ S+
Sbjct: 16 ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 71
Query: 246 NQLSGLL----------------PREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSL 289
NQL+ + + I
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131
Query: 290 NLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIP 349
L + S L + LQ L + N ++ P + NL L +LD+S N ++
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--I 187
Query: 350 SQLGKIPN 357
S L K+ N
Sbjct: 188 SVLAKLTN 195
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.5 bits (112), Expect = 3e-06
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
+ F +GTG +G V + SG A+K L + + +L +E
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIE 86
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (111), Expect = 3e-06
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
EDF + +G G +G V+ A+ + + A+K L + +E
Sbjct: 2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVE 47
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 46.7 bits (110), Expect = 4e-06
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
++ + + +G GG V+ A+ L R VA+K L + +F
Sbjct: 6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYL 52
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 4e-06
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 4/146 (2%)
Query: 216 ELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQ-LSGLLPREVGNLKYLDSLSLDRNNLIG 274
LR + + + LT L + + Q L L R++ L L +L++ ++ L
Sbjct: 12 GLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 275 PIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSI-PSEIGNLIH 333
P + L+ LNL +N S+ + + LQ L ++ N L S +
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129
Query: 334 LRQLDLSHNFINGTIPSQLGKIPNVS 359
+ + L +PN S
Sbjct: 130 EGLGGVPEQKLQCHGQGPLAHMPNAS 155
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 3e-05
Identities = 23/153 (15%), Positives = 53/153 (34%), Gaps = 4/153 (2%)
Query: 230 PTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPP-TIGYLTNLTS 288
P + L + + + + L L ++ + + + L L +
Sbjct: 2 PDACCPHGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60
Query: 289 LNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTI 348
L + + L P +L L ++ N+L S+ + + L++L LS N ++ +
Sbjct: 61 LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSC 119
Query: 349 PSQ-LGKIPNVSEVDVSKNNLSGVIPKSVFRVP 380
+ L + V + L + +P
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP 152
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.002
Identities = 27/148 (18%), Positives = 43/148 (29%), Gaps = 4/148 (2%)
Query: 141 NLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV-GNLKNLDSLLLNRNN 199
L + L L+ LY+ + L L L +L + ++
Sbjct: 9 GSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 200 LTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLS-GLLPREVGN 258
L P F L L LS N L+ + L L LS N L R +
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126
Query: 259 LKYLDSLSLDRNNLIGPIPPTIGYLTNL 286
+ + L + ++ N
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNA 154
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.004
Identities = 22/164 (13%), Positives = 37/164 (22%), Gaps = 26/164 (15%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
L + + + +L EL +
Sbjct: 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQ-----------------------QH 43
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163
L L + L L +L + + L P L L L N L +
Sbjct: 44 LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQG 102
Query: 164 NQLSTLYLAYNNLVGPL-PKEVGNLKNLDSLLLNRNNLTGPIPS 206
L L L+ N L + + + + L
Sbjct: 103 LSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.8 bits (108), Expect = 7e-06
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+ + + +GTG + V A+ + ++VA+K + + E
Sbjct: 8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG 49
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 45.8 bits (108), Expect = 7e-06
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELA 524
E++ K +G G V R + + A+K + + +
Sbjct: 3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFS 45
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 7e-06
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
E+F IG G YG VY+A+ +G VVALKK+ E
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE 42
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (108), Expect = 9e-06
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFL 526
E + I +G G +G V+R SS + K + T+++
Sbjct: 5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVK 49
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (107), Expect = 9e-06
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
DF +G G +G V + ++GR A+K L + +
Sbjct: 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVA 50
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (107), Expect = 1e-05
Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
+ + IG G G+VY A +++G+ VA+++++ + + +
Sbjct: 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELII 65
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.2 bits (106), Expect = 1e-05
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 475 FEEMIQATEDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSETEEL 523
+ + IG G +G V++A+ +VA+K L + ++
Sbjct: 5 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADM 59
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 1e-05
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+ + IG G YG+V++A+ + +VALK++ + +E
Sbjct: 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE 42
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 45.3 bits (105), Expect = 1e-05
Identities = 46/307 (14%), Positives = 91/307 (29%), Gaps = 33/307 (10%)
Query: 96 DLRLQGNKLDGL--IPSSIGNLTNLTHLDLSLNQLSGR----LPQEVGNLKNLVSLFLDN 149
L+L + + + + ++ + LS N + L + + + K+L +
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 150 NNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIG 209
L L L L + L++ + P+
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128
Query: 210 FLNLLDELRLS---HNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266
N L + + + N L S+ N+L +E L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188
Query: 267 LDRNNLIGPIPPTIGYLTNLTSL-------------NLGYNQLNSSIPPELMNCSQLQNL 313
+ I P L L N + +S++ L + L+ L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248
Query: 314 AVNHNSLSGSIPSEIGN------LIHLRQLDLSHNFINGTIPSQL-----GKIPNVSEVD 362
+N LS + + + I L+ L L +N I L K+P++ ++
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308
Query: 363 VSKNNLS 369
++ N S
Sbjct: 309 LNGNRFS 315
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 44.5 bits (103), Expect = 2e-05
Identities = 49/326 (15%), Positives = 93/326 (28%), Gaps = 34/326 (10%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNG----SIPLEFGNLKDLYDLRLQG 101
LK+ ++ ++ + + + E+ LS N + + + KDL
Sbjct: 10 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 102 N---KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPS 158
++ IP ++ L L+ + + + FL + +
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128
Query: 159 TLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT----GPIPSTIGFLNLL 214
L + +A + K+ N L S++ RN L T LL
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLS---------GLLPREVGNLKYLDSL 265
+++ N + + +L L L + + L L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248
Query: 266 SLDRNNLIGPIPPTIG------YLTNLTSLNLGYNQLNSSIPPELM-----NCSQLQNLA 314
L+ L + L +L L YN++ L L L
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308
Query: 315 VNHNSLS--GSIPSEIGNLIHLRQLD 338
+N N S + EI + R
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGRG 334
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.5 bits (90), Expect = 0.001
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 85 PLEFGNLKDLYDLRLQGNKLDGLIPSSI-----GNLTNLTHLDLSLNQLSGRLPQEVGNL 139
L LRLQ N+++ ++ + +L L+L+ N+ S V +
Sbjct: 266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE-EDDVVDEI 324
Query: 140 KNLVSLFLDNN 150
+ + S
Sbjct: 325 REVFSTRGRGE 335
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.6 bits (85), Expect = 0.003
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGS-----LRDLLELNLSYNILNGSIPLEFGNLKDLYDL 97
L+ L L YN + + + + DLL L L+ N +++++
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFST 330
Query: 98 RLQGN 102
R +G
Sbjct: 331 RGRGE 335
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.1 bits (106), Expect = 1e-05
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
DF + IG GG+G VY + +G++ A+K L + +
Sbjct: 4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM 44
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 45.1 bits (106), Expect = 1e-05
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
+ + I +GTG +G V+R ++G A K + + +
Sbjct: 26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVR 71
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 2e-05
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
E + +G+G YGSV A +G VA+KKL R
Sbjct: 17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI 58
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.6 bits (102), Expect = 2e-05
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 491 IGTGGYGSVYRAQLSSGRVVALKKLHRSETE 521
+G G +V+ +K T
Sbjct: 8 MGEGKESAVFNCYSEKFGECVVKFHKVGHTS 38
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 44.7 bits (105), Expect = 2e-05
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
+ + I +G+G +G V+R ++GRV K ++ + ++
Sbjct: 29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVK 74
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 2e-05
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 483 EDFHIKYCIGTGGYGSVYRA------QLSSGRVVALKKLHRSETEE 522
+ + +G G +G V A + ++ R VA+K L T
Sbjct: 13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS 58
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.4 bits (104), Expect = 2e-05
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 485 FHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
+ + IG+G +G +Y +++G VA+K +E
Sbjct: 9 YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIE 52
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 3e-05
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 474 TFEEMIQATEDFHIKY----CIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+E+ + + Y +G+G YG+V A +G VA+KKL+R E
Sbjct: 5 YRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSE 58
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 3e-05
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAF 525
++ IG G +G V+R + G VA+K E
Sbjct: 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFR 44
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 3e-05
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQ--LSSGRVVALKKLHRSETEELAFLET 528
A + + IG G YG V++A+ + GR VALK++ EE L T
Sbjct: 5 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLST 54
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 471 GRITFEEMIQATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
G TF + + + IG+G G V A R VA+KKL R +
Sbjct: 9 GDSTFTVL----KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ 57
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 3e-05
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQL----SSGRVVALKKLHRSETEE 522
E+F + +GTG YG V+ + +G++ A+K L ++ +
Sbjct: 24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQ 67
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 3e-05
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSS----GRVVALKKLHRSETEEL 523
E + CIG G +G V++ S VA+K ++ +
Sbjct: 7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSV 51
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.8 bits (103), Expect = 3e-05
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
+ F IG G +G+VY A+ + + VVA+KK+ S + +
Sbjct: 14 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQ 60
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 4e-05
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSS----GRVVALKKLHRSETEELAFLE 527
+D + +G G +G V R + + VA+K L + ++
Sbjct: 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMD 56
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (102), Expect = 4e-05
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 479 IQATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEEL 523
+ + + I +G G +G VY+AQ + + A K + EEL
Sbjct: 8 LNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEEL 53
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 5e-05
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+ + +G+G + V + + S+G A K + + T+
Sbjct: 10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKS 50
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 6e-05
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSETEE 522
E + +G G +G VY VA+K ++ + +
Sbjct: 20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 65
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 6e-05
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSG---RVVALKKLHRSETEE 522
D + IG G +G V +A++ A+K++ +++
Sbjct: 10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD 52
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 6e-05
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSG-----RVVALKKLHRSETEE 522
+ IG G +G VY+ L + VA+K L TE+
Sbjct: 7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEK 51
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 6e-05
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 484 DFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLET 528
+ + +G+GG+GSVY +S VA+K + + + L
Sbjct: 5 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPN 50
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 7e-05
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSETEE 522
+G G +G V A + VA+K L S
Sbjct: 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLT 68
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 7e-05
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQL--------SSGRVVALKKLHRSETEE-----LAFLETS 529
+ + +G G +G V A+ + VA+K L TE+ ++ +E
Sbjct: 13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72
Query: 530 STDFRHYNSHTDNDDSSDEH 549
+H N + +
Sbjct: 73 KMIGKHKNIINLLGACTQDG 92
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 42.5 bits (99), Expect = 8e-05
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 485 FHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+ + IG G +G ++ L + + VA+K R
Sbjct: 7 YKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAP 45
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 1e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+ IG G YG V A + VA+KK+ E +
Sbjct: 7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQT 48
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 1e-04
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+ IG G +G V++A+ +G+ VALKK+ +E
Sbjct: 10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE 50
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 1e-04
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE 519
+ IG G +G VY+A+L SG +VA+KK+ + +
Sbjct: 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK 57
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 485 FHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELAFLE 527
+ + +G G + +V+ A+ + + VA+K + + A +
Sbjct: 15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAED 58
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (96), Expect = 2e-04
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
+ IG+G +G+VY+ + VA+K L+ +
Sbjct: 8 GQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTP 45
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 3e-04
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 491 IGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
+G G + +VY+A+ ++ ++VA+KK+ E
Sbjct: 6 LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSE 38
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 4e-04
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 483 EDFHI-KYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSE 519
+D+ + +G G G V + + ALK L
Sbjct: 11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCP 49
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (93), Expect = 4e-04
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 476 EEMIQATEDFHI-KYCIGTGGYGSVYRAQL---SSGRVVALKKLHRSETEE 522
+++ ++ I +G G +GSV + VA+K L + +
Sbjct: 1 KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA 51
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (93), Expect = 5e-04
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 483 EDFHIKYCIGTGGYGSVYRA------QLSSGRVVALKKLHRSETEE 522
E+ +G+G +G V A + VA+K L
Sbjct: 37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSS 82
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 6e-04
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQ-LSSGRV----VALKKLHRSETEE 522
+F +G+G +G+VY+ + G VA+K+L + + +
Sbjct: 9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 53
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 7e-04
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 491 IGTGGYGSVYRAQL---SSGRVVALKKLHRSETEE 522
+G+G +G+V + + VA+K L +
Sbjct: 15 LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDP 49
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (91), Expect = 7e-04
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 491 IGTGGYGSVYRAQL-SSGRVVALKKLHRSETEE 522
IG G + +VY+ + VA +L + +
Sbjct: 17 IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK 49
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (89), Expect = 0.002
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 486 HIKYCIGTGGYGSVYRAQL----SSGRVVALKKLHRSETEE 522
H IG G +G VY L A+K L+R
Sbjct: 30 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG 70
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 37.0 bits (84), Expect = 0.003
Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 32/206 (15%)
Query: 59 TIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNL 118
TI I + + + + + +L ++ + +++ L
Sbjct: 6 TIKDAIRIFEERKSVVAT-------------EAEKV-ELHGMIPPIEKM-DATLSTLKAC 50
Query: 119 THLDLSLNQLSGRLPQEVGNLKNLVSL-FLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLV 177
HL LS N + ++ +L + +L L L + N +
Sbjct: 51 KHLALSTNNIE-----KISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI 105
Query: 178 GPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTY 237
L + + N + L+ L++L L+ N L Y
Sbjct: 106 ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165
Query: 238 LTSLDLSSNQLSGLLPREVGNLKYLD 263
++ LP NLK LD
Sbjct: 166 R-------IEVVKRLP----NLKKLD 180
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 599 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.83 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.82 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.82 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.82 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.82 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.81 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.79 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.79 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.78 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.78 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.78 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.78 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.77 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.77 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.76 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.76 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.75 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.75 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.75 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.75 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.75 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.74 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.74 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.74 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.74 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.74 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.73 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.73 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.73 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.73 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.73 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.73 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.72 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.72 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.72 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.71 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.71 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.71 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.71 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.71 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.7 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.7 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.7 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.7 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.7 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.7 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.69 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.69 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.68 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.68 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.68 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.66 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.65 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.64 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.64 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.62 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.61 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.61 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.6 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.6 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.6 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.59 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.59 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.59 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.58 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.58 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.57 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.55 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.55 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.55 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.53 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.5 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.5 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.48 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.37 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.37 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 99.34 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.33 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.33 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.25 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.53 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.37 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.81 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.73 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.32 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.15 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=2.6e-30 Score=254.53 Aligned_cols=248 Identities=32% Similarity=0.456 Sum_probs=132.3
Q ss_pred CCCEEEcccCcCcc--cCCcCCCCCCCCCEEeccC-CcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEE
Q 007553 45 RLKVLDLSYNRLTG--TIPSEIGSLRDLLELNLSY-NILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHL 121 (599)
Q Consensus 45 ~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 121 (599)
+++.|+|+++.+++ .+|..++++++|++|+|++ |.+++.+|.+|+++++|++|+|++|++.+..+..+..+.+|+++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 45666666666554 3555566666666666654 45555556566666666666666666655555555555566666
Q ss_pred eeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCC-CeeecccccccccCccccCCCCCCCEEEccCCcc
Q 007553 122 DLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQL-STLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNL 200 (599)
Q Consensus 122 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L-~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 200 (599)
++++|.+...+|..+.++++|+++++++|.+.+.+|..+..+..+ +.++++.|++.+..+..+..+..+ .+++.
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~---- 205 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLS---- 205 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECC----
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccc----
Confidence 666655555555555555555555555555555555555554443 445555555554444444433222 34444
Q ss_pred cccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCc
Q 007553 201 TGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTI 280 (599)
Q Consensus 201 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 280 (599)
.+...+..|..+..+++++.+++++|.+.+.+| .+..+++|+.|+|++|+++|.+|..+
T Consensus 206 --------------------~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l 264 (313)
T d1ogqa_ 206 --------------------RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp --------------------SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred --------------------ccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHH
Confidence 444444444444444555555555555443322 34444555555555555555555555
Q ss_pred cCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCc
Q 007553 281 GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNS 319 (599)
Q Consensus 281 ~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~ 319 (599)
..+++|++|+|++|+++|.+|. +..+++|+.+++++|+
T Consensus 265 ~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 265 TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 5555555555555555554442 3445555555555554
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=5.7e-30 Score=252.02 Aligned_cols=252 Identities=34% Similarity=0.541 Sum_probs=185.6
Q ss_pred CCcEEEeecCcCCc--cCCccccCCCcCCEEeeec-ccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCee
Q 007553 93 DLYDLRLQGNKLDG--LIPSSIGNLTNLTHLDLSL-NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTL 169 (599)
Q Consensus 93 ~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 169 (599)
+++.|+|++|.+.+ .+|..++++++|++|++++ |++.+.+|..++++++|++|++++|++.+..+..+..++.|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 34455555554443 2445555555555555554 45555555555555555555555555555555555556666666
Q ss_pred ecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCC-CEEeCCCCcCcccCcccCCCCCCCCEEEccCCcC
Q 007553 170 YLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLL-DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQL 248 (599)
Q Consensus 170 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 248 (599)
+++.|.+.+.+|..+..++.|+.+++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+..+ .+++..+..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 666666666666666666666666666666666666666665554 678888888887777777766554 799999999
Q ss_pred CCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccc
Q 007553 249 SGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEI 328 (599)
Q Consensus 249 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 328 (599)
.+..|..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|..+..+++|+.|+|++|+++|.+|. +
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~ 287 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence 99999999999999999999999987765 578899999999999999999999999999999999999999998885 5
Q ss_pred cCCCCCCEEeCCCcc-cccc
Q 007553 329 GNLIHLRQLDLSHNF-INGT 347 (599)
Q Consensus 329 ~~l~~L~~L~l~~n~-l~~~ 347 (599)
+.+++|+.+++++|+ +.|.
T Consensus 288 ~~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 288 GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST
T ss_pred ccCCCCCHHHhCCCccccCC
Confidence 788999999999997 4543
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=2.4e-27 Score=240.41 Aligned_cols=324 Identities=28% Similarity=0.401 Sum_probs=199.5
Q ss_pred cCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCc
Q 007553 16 TCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95 (599)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 95 (599)
..+.+|++|++.+ +.+++ + +.+..+++|++|+|++|++++. + .++++++|++|++++|.+.+.. .++++++|+
T Consensus 41 ~~l~~l~~L~l~~-~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~ 113 (384)
T d2omza2 41 TDLDQVTTLQADR-LGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLT 113 (384)
T ss_dssp HHHTTCCEEECCS-SCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCC
T ss_pred HHhCCCCEEECCC-CCCCC-c-cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc--ccccccccc
Confidence 3456677777776 66553 2 3566777777777777777743 3 2777777777777777776433 366777777
Q ss_pred EEEeecCcCCccCCccccCCCcCCEEeeecccccccCC-------------------ccccCCCcccEEecccCccCCCC
Q 007553 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP-------------------QEVGNLKNLVSLFLDNNNLTGPI 156 (599)
Q Consensus 96 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-------------------~~l~~l~~L~~L~l~~n~i~~~~ 156 (599)
.|+++++.+.+.. .......+..+....+.+....+ ..+...+.........|... .
T Consensus 114 ~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 189 (384)
T d2omza2 114 GLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--D 189 (384)
T ss_dssp EEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--C
T ss_pred ccccccccccccc--cccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--c
Confidence 7777777776442 23444556666655554432211 11222222333333333222 2
Q ss_pred cccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCC
Q 007553 157 PSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLT 236 (599)
Q Consensus 157 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 236 (599)
...+..+++++.+++++|.+.+..+ +..+++|++|++++|.++.. ..+..++.|+.|++++|.+++.. .+..++
T Consensus 190 ~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~ 263 (384)
T d2omza2 190 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLT 263 (384)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccc
Confidence 2345556677777777776665433 34556777777777766532 34566677777777777776442 356677
Q ss_pred CCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcc
Q 007553 237 YLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVN 316 (599)
Q Consensus 237 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~ 316 (599)
+|++|+++++.+.+.. .+..++.++.+++..|.+.+. ..+..+++++.|++++|++++.. .+..+++|+.|+++
T Consensus 264 ~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~ 337 (384)
T d2omza2 264 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA 337 (384)
T ss_dssp TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECC
T ss_pred cCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECC
Confidence 7777777777776432 356667777777777766542 33566677777777777776532 35667777777777
Q ss_pred cCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCC
Q 007553 317 HNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKN 366 (599)
Q Consensus 317 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n 366 (599)
+|.+++ ++ .+.++++|++|++++|++++..| +..+++|+.|++++|
T Consensus 338 ~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 338 NNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp SSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 777764 33 46667777777777777775443 666777777777766
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=5.6e-26 Score=230.18 Aligned_cols=336 Identities=28% Similarity=0.402 Sum_probs=257.5
Q ss_pred eeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcC
Q 007553 25 RIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKL 104 (599)
Q Consensus 25 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 104 (599)
.+.. +.+++.+. ...+.+|++|+++++.|+. + +.+..+++|++|+|++|++++.. .|+++++|++|++++|++
T Consensus 28 ~l~~-~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i 100 (384)
T d2omza2 28 VLGK-TNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQI 100 (384)
T ss_dssp HTTC-SSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred HhCC-CCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccc
Confidence 4444 45555443 3467889999999999984 4 35788999999999999999653 389999999999999999
Q ss_pred CccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCc-------------------ccccCCCC
Q 007553 105 DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP-------------------STLYHLNQ 165 (599)
Q Consensus 105 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-------------------~~l~~l~~ 165 (599)
.+.. .++++++|+.|+++++.+++..+ ......+..+....|.+....+ ..+...+.
T Consensus 101 ~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (384)
T d2omza2 101 ADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 176 (384)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTT
T ss_pred cccc--ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence 8653 48999999999999998885533 3455667777776665543221 12222233
Q ss_pred CCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccC
Q 007553 166 LSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS 245 (599)
Q Consensus 166 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 245 (599)
........|... ....+..+++++.+++++|.+++..+ +...+.|+.|++++|.++.. ..+..+++|+.|++++
T Consensus 177 ~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 250 (384)
T d2omza2 177 LERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN 250 (384)
T ss_dssp CCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred cccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhcccc
Confidence 333333333332 23456778999999999999886544 45678999999999999853 3678899999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCC
Q 007553 246 NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325 (599)
Q Consensus 246 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 325 (599)
|.+++.. .+..+++|+.|++++|.+.+.. .+..++.++.++++.|.+.+. ..+..+++++.|++++|.+++..
T Consensus 251 n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~- 323 (384)
T d2omza2 251 NQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS- 323 (384)
T ss_dssp SCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG-
T ss_pred CccCCCC--cccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc-
Confidence 9998643 3888999999999999987543 367789999999999999753 45788899999999999998653
Q ss_pred ccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCC-ccCCCCCeeecccC
Q 007553 326 SEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP-KSVFRVPGLKWSEN 387 (599)
Q Consensus 326 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~l~~~~n 387 (599)
.+..+++|++|++++|++++ ++ .+..+++|+.|++++|++++..| ..+..++.+++++|
T Consensus 324 -~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 324 -PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383 (384)
T ss_dssp -GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred -ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence 37889999999999999984 44 58889999999999999998765 23445577777765
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=8.2e-26 Score=221.19 Aligned_cols=267 Identities=26% Similarity=0.307 Sum_probs=135.2
Q ss_pred CCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeee
Q 007553 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS 124 (599)
Q Consensus 45 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 124 (599)
..+.++.++..++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCC-ccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 4566666666666 455544 2466777777776664444566666677777777766665556666666666666666
Q ss_pred cccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccccc--ccCccccCCCCCCCEEEccCCcccc
Q 007553 125 LNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLV--GPLPKEVGNLKNLDSLLLNRNNLTG 202 (599)
Q Consensus 125 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~ 202 (599)
+|+++. +|.. ....++.|++.+|.+.+..+..+.....+..++...|... ...+..+..+++|+.+++++|.+..
T Consensus 88 ~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~ 164 (305)
T d1xkua_ 88 KNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 164 (305)
T ss_dssp SSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence 666663 3322 2245566666666665544444555555555555544322 1222334444455555555544432
Q ss_pred cCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccC
Q 007553 203 PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGY 282 (599)
Q Consensus 203 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 282 (599)
++.. .+++|++|++++|...+..+..+..++.++.|++++|.+.+..+..+..
T Consensus 165 -l~~~--------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~ 217 (305)
T d1xkua_ 165 -IPQG--------------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217 (305)
T ss_dssp -CCSS--------------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred -cCcc--------------------------cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc
Confidence 1111 1234444444444444334444444444444444444444444444444
Q ss_pred CCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCc------cccCCCCCCEEeCCCcccc
Q 007553 283 LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPS------EIGNLIHLRQLDLSHNFIN 345 (599)
Q Consensus 283 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~ 345 (599)
+++|++|+|++|.++ .+|.++..+++|+.|++++|+++..... ......+|+.|++++|.+.
T Consensus 218 l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 444444444444444 2344444445555555555544422111 1223455666666666554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=7.2e-25 Score=214.39 Aligned_cols=267 Identities=24% Similarity=0.289 Sum_probs=189.5
Q ss_pred CCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecc
Q 007553 69 DLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLD 148 (599)
Q Consensus 69 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 148 (599)
.+++++.+++.++ .+|..+. ++|++|+|++|+++.+.+..|.++++|++|++++|.+....|+.|.++++|++|+++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 4566676666666 4455443 466777777777665444556666677777776666665556666666666666666
Q ss_pred cCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCc--c
Q 007553 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD--G 226 (599)
Q Consensus 149 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~ 226 (599)
+|+++. +|.. ....++.|.+..|.+... .+..+.....+..++...|... .
T Consensus 88 ~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l------------------------~~~~~~~~~~~~~l~~~~n~~~~~~ 140 (305)
T d1xkua_ 88 KNQLKE-LPEK--MPKTLQELRVHENEITKV------------------------RKSVFNGLNQMIVVELGTNPLKSSG 140 (305)
T ss_dssp SSCCSB-CCSS--CCTTCCEEECCSSCCCBB------------------------CHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred CCccCc-Cccc--hhhhhhhhhccccchhhh------------------------hhhhhhccccccccccccccccccC
Confidence 666553 2222 123444555554444433 3333444444455555544322 2
Q ss_pred cCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcC
Q 007553 227 PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN 306 (599)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~ 306 (599)
..+..+..+++|+.+++++|.+.. +|.. .+++|+.|++++|...+..+..+..++.++.|++++|.+.+..+..+..
T Consensus 141 ~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~ 217 (305)
T d1xkua_ 141 IENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217 (305)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred CCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc
Confidence 234456778888999999998874 4443 3678999999999999888899999999999999999999888888999
Q ss_pred CCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcc------cCCCCCCCEEECCCCcCc
Q 007553 307 CSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQ------LGKIPNVSEVDVSKNNLS 369 (599)
Q Consensus 307 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~~~L~~L~ls~n~l~ 369 (599)
+++|++|+|++|+++ .+|.++..+++|+.|++++|+++...... ....++|+.|++++|+++
T Consensus 218 l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 999999999999998 56888999999999999999998543333 345678999999999986
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.7e-25 Score=212.12 Aligned_cols=249 Identities=22% Similarity=0.173 Sum_probs=119.2
Q ss_pred cCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEcc
Q 007553 117 NLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLN 196 (599)
Q Consensus 117 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 196 (599)
.+++|++++|.++...+..|.++++|++|++++|.+....+..+..++.++.+....
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~----------------------- 89 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD----------------------- 89 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-----------------------
T ss_pred CCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccc-----------------------
Confidence 445555555555444444445555555555555544444333444444444443321
Q ss_pred CCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecC
Q 007553 197 RNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276 (599)
Q Consensus 197 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 276 (599)
.+.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+++..+..|..+++|+.|++++|++.+..
T Consensus 90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~ 169 (284)
T d1ozna_ 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (284)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence 22233233334444444445555544444333344444555555555555555444444555555555555555555444
Q ss_pred CcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCC
Q 007553 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIP 356 (599)
Q Consensus 277 ~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 356 (599)
+..|..+++|+.+++++|++++..|..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...-+... -..
T Consensus 170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~-l~~ 248 (284)
T d1ozna_ 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWA 248 (284)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH-HHH
T ss_pred hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchH-HHH
Confidence 4555555555555555555555555555555555555555555555555555555555566665555553221100 001
Q ss_pred CCCEEECCCCcCcccCCccCCCCCeeecccCcc
Q 007553 357 NVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNL 389 (599)
Q Consensus 357 ~L~~L~ls~n~l~~~~~~~~~~~~~l~~~~n~~ 389 (599)
.++.+....+.+.+..|..+......+++.+.+
T Consensus 249 ~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~l 281 (284)
T d1ozna_ 249 WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 281 (284)
T ss_dssp HHHHCCSEECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred HHHhCcCCCCceEeCCchHHcCCccccCCHHHC
Confidence 122333344555555555554433333333333
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.5e-25 Score=212.72 Aligned_cols=224 Identities=27% Similarity=0.289 Sum_probs=140.6
Q ss_pred EEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeee-cc
Q 007553 48 VLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLS-LN 126 (599)
Q Consensus 48 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~-~n 126 (599)
.++++++.++ .+|..+. +++++|+|++|+++...+.+|.++++|++|++++|++....+..+..+..++.+... .+
T Consensus 15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (284)
T ss_dssp EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 3455555555 4554332 456667777766665555566666667777776666665555556666666666543 34
Q ss_pred cccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCch
Q 007553 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPS 206 (599)
Q Consensus 127 ~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 206 (599)
.+....+..+.++++|++|++++|.+....+..+...++|+.+++++|.+.+..+..|..+++|+.|++++|.+....+.
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~ 171 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence 45544555666666666666666666555555556666666666666666655555566666666666666666655555
Q ss_pred hccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceee
Q 007553 207 TIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG 274 (599)
Q Consensus 207 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 274 (599)
.|..+++|+.+++++|.+.+..|..|..+++|++|++++|.+.+..+..|+.+++|++|+|++|.+..
T Consensus 172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence 66666666666666666666666666666666666666666666555666666666666666666654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.5e-22 Score=193.26 Aligned_cols=199 Identities=30% Similarity=0.276 Sum_probs=104.3
Q ss_pred CCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEE
Q 007553 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHL 121 (599)
Q Consensus 42 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 121 (599)
+...+...+++++.++ .+|..+. ++|++|+|++|++++..+.+|.++++|++|+|++|+++.. + .++.+++|++|
T Consensus 8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L 82 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL 82 (266)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence 3444555566666666 4554432 4566666666666655555666666666666666666532 2 24555666666
Q ss_pred eeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCccc
Q 007553 122 DLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 122 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 201 (599)
++++|++.. .+..+.++++|++|++++|.+....+..+..+.++++|++++|.+....+..+..+++|+.+++++|.++
T Consensus 83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~ 161 (266)
T d1p9ag_ 83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (266)
T ss_dssp ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence 666666552 2344555555555555555555444444445555555555555554444444444445555555555444
Q ss_pred ccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCc
Q 007553 202 GPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQ 247 (599)
Q Consensus 202 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 247 (599)
+..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.
T Consensus 162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence 443444444444444444444444 334344444444444444443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.2e-22 Score=190.83 Aligned_cols=203 Identities=29% Similarity=0.268 Sum_probs=179.7
Q ss_pred ccCCCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCC
Q 007553 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94 (599)
Q Consensus 15 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 94 (599)
+.....+.+++..+ +.++ .+|+.+. +++++|+|++|.|++..+.+|.++++|++|+|++|+++.. | .++.+++|
T Consensus 6 ~~~~~~~~~v~C~~-~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L 79 (266)
T d1p9ag_ 6 VSKVASHLEVNCDK-RNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVL 79 (266)
T ss_dssp EECSTTCCEEECTT-SCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTC
T ss_pred EcccCCCeEEEccC-CCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccc
Confidence 45667777788887 7777 5787663 5799999999999977778899999999999999999854 3 46789999
Q ss_pred cEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccc
Q 007553 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYN 174 (599)
Q Consensus 95 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 174 (599)
++|+|++|++.. .+..+..+++|++|++++|.+....+..+..+.++++|++++|.++...+..+..++.|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N 158 (266)
T d1p9ag_ 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (266)
T ss_dssp CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc
Confidence 999999999985 4678899999999999999999888888999999999999999999877778889999999999999
Q ss_pred cccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCc
Q 007553 175 NLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLD 225 (599)
Q Consensus 175 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 225 (599)
++.+..+..|..+++|++|+|++|.++ .+|..+..++.|+.|+|++|.+.
T Consensus 159 ~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 999888888999999999999999998 68888888999999999999875
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.83 E-value=1.3e-17 Score=165.70 Aligned_cols=312 Identities=25% Similarity=0.278 Sum_probs=181.4
Q ss_pred CCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEE
Q 007553 19 PNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLR 98 (599)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 98 (599)
.++++|++++ +.++ .+|+. .++|++|+|++|+|+ .+|.. +.+|+.|++++|.++. ++. + .+.|++|+
T Consensus 38 ~~l~~LdLs~-~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~ 104 (353)
T d1jl5a_ 38 RQAHELELNN-LGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLG 104 (353)
T ss_dssp HTCSEEECTT-SCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEE
T ss_pred cCCCEEEeCC-CCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh-h--cccccccc
Confidence 3577777776 6665 46653 356777777777777 55643 3567777777777762 221 1 13577777
Q ss_pred eecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccc
Q 007553 99 LQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVG 178 (599)
Q Consensus 99 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 178 (599)
+++|.+.. +| .++.+++|++|+++++.+... +. ....+..+.+..+.... ...+..++.++.+.++.|....
T Consensus 105 L~~n~l~~-lp-~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~ 176 (353)
T d1jl5a_ 105 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKK 176 (353)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSS
T ss_pred cccccccc-cc-chhhhccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceecccccccccc
Confidence 77777763 34 356677777777777766533 22 23455666665554432 3345667777777777776553
Q ss_pred cCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCC
Q 007553 179 PLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGN 258 (599)
Q Consensus 179 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 258 (599)
.. . .....+.+....+.+. ..+ .+..++.|+.+++++|.... .+ ....++..+.+..+.+.. .+. .
T Consensus 177 ~~-~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~-~~~---~ 242 (353)
T d1jl5a_ 177 LP-D---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTD-LPE---L 242 (353)
T ss_dssp CC-C---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSC-CCC---C
T ss_pred cc-c---cccccccccccccccc-ccc-cccccccccccccccccccc-cc---cccccccccccccccccc-ccc---c
Confidence 21 1 1223345555544433 222 34556777777777766552 22 234556667777766653 221 2
Q ss_pred CCCCCEEeccCcceeecCCcCccCCCCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEe
Q 007553 259 LKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLD 338 (599)
Q Consensus 259 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 338 (599)
...+...++..+.+.+.. . -.......++..+.+.+. ...+++|++|++++|+++ .+|.. +++|+.|+
T Consensus 243 ~~~l~~~~~~~~~~~~l~-~---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~ 310 (353)
T d1jl5a_ 243 PQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLI 310 (353)
T ss_dssp CTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEE
T ss_pred cccccccccccccccccc-c---ccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEE
Confidence 344555666555443221 0 113345556666555432 234567888888888887 45543 56788888
Q ss_pred CCCccccccCCcccCCCCCCCEEECCCCcCcccCCccCCCCCee
Q 007553 339 LSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGL 382 (599)
Q Consensus 339 l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~l 382 (599)
+++|+++ .+|.. +++|+.|++++|+++. +|+....+..+
T Consensus 311 L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~-lp~~~~~L~~L 349 (353)
T d1jl5a_ 311 ASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPDIPESVEDL 349 (353)
T ss_dssp CCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CCCCCTTCCEE
T ss_pred CCCCcCC-ccccc---cCCCCEEECcCCcCCC-CCccccccCee
Confidence 8888887 45543 4578888888888763 45433333433
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=4.9e-21 Score=185.07 Aligned_cols=123 Identities=26% Similarity=0.357 Sum_probs=101.5
Q ss_pred cccHHHHHHHhhhccc---------cceecccCCceEEEEEeC-CC---CEEEEEEecCCch--hhHHHHHHhhc--ccc
Q 007553 472 RITFEEMIQATEDFHI---------KYCIGTGGYGSVYRAQLS-SG---RVVALKKLHRSET--EELAFLETSST--DFR 534 (599)
Q Consensus 472 ~~~~~~l~~at~~~~~---------~~~lg~g~~g~v~~~~~~-~g---~~vavK~l~~~~~--~~~~f~~e~~~--~l~ 534 (599)
.++|+|+..|+.+|.. .+.||+|+||+||+|... +| ..||||++..... ..++|.+|+.+ +++
T Consensus 6 ~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~ 85 (299)
T d1jpaa_ 6 PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD 85 (299)
T ss_dssp GGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC
Confidence 4677888888887753 367999999999999974 23 3689999876433 35679999998 999
Q ss_pred ccC--------CCCCCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 535 HYN--------SHTDNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 535 H~n--------~~~~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||| ...+..++|||||++| .+++.... ..++|.+++.|+.|||+||+||| ..+|+|||||
T Consensus 86 HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~--~~l~~~~~~~i~~qia~gl~yLH---~~~iiHrDlK 155 (299)
T d1jpaa_ 86 HPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQND--GQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLA 155 (299)
T ss_dssp CTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred CCCCccEEEEEeeCCEEEEEEEecCCCcceeeecccc--CCCCHHHHHHHHHHHHHHHHHHh---hCCCccCccc
Confidence 999 5678899999999999 77777533 35999999999999999999999 7899999997
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4.3e-21 Score=182.13 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=97.9
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~G 553 (599)
+|...+.||+|+||+||+|.+.+++.||||+++.......+|.+|+.+ +++||| ...+..++|||||++|
T Consensus 6 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g 85 (263)
T d1sm2a_ 6 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHG 85 (263)
T ss_dssp CEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred HcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCC
Confidence 456667899999999999999888999999998765556789999998 999999 5678899999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++... ...++|.+++.||.|||+||+||| ..+|+|||||
T Consensus 86 ~L~~~l~~~--~~~~~~~~~~~i~~qia~gl~~lH---~~~iiHrDlK 128 (263)
T d1sm2a_ 86 CLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLA 128 (263)
T ss_dssp BHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCTTCS
T ss_pred cHHHHhhcc--ccCCCHHHHHHHHHHHHHHHHhhh---ccceeecccc
Confidence 8888753 345899999999999999999999 7899999996
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=6.3e-21 Score=179.94 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=98.0
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~~ 552 (599)
++|...+.||+|+||+||+|++++++.||||+++.......+|.+|+.+ +++||| .+.+..++||||+++
T Consensus 4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~ 83 (258)
T d1k2pa_ 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMAN 83 (258)
T ss_dssp CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTT
T ss_pred HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCC
Confidence 4566778899999999999999888899999998766667789999998 999999 566789999999999
Q ss_pred c--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
| .+++... ...++|..+.+|+.|||+||+||| ..+|+||||+
T Consensus 84 g~l~~~~~~~--~~~~~~~~~~~i~~qi~~gl~~LH---~~~iiH~dlk 127 (258)
T d1k2pa_ 84 GCLLNYLREM--RHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLA 127 (258)
T ss_dssp EEHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHH---HTTBCCSCCS
T ss_pred CcHHHhhhcc--ccCCcHHHHHHHHHHHHHHHHHHh---hcCccccccc
Confidence 9 6666643 234899999999999999999999 7899999996
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.7e-21 Score=183.45 Aligned_cols=113 Identities=20% Similarity=0.305 Sum_probs=97.5
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeecccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G 553 (599)
++|...+.||+|+||+||+|.+++++.||||+++......++|.+|+.+ +++||| ...+..++||||+++|
T Consensus 13 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~~g 92 (272)
T d1qpca_ 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENG 92 (272)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTC
T ss_pred HHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCCCC
Confidence 4566677899999999999999888899999998766556789999998 999999 4567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... ...++|.++++||.|||+||+||| ..+|+|||||
T Consensus 93 ~L~~~~~~~~-~~~l~~~~~~~i~~qi~~gl~~lH---~~~ivHrDiK 136 (272)
T d1qpca_ 93 SLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLR 136 (272)
T ss_dssp BHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred cHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccc
Confidence 67666422 235899999999999999999999 7899999997
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=3.2e-21 Score=185.16 Aligned_cols=114 Identities=22% Similarity=0.272 Sum_probs=98.8
Q ss_pred hhhccccceecccCCceEEEEEeC-CCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
.++|...+.||+|+||+||+|... +|+.||||+++....+.++|.+|+.+ +++||| .+++..++|||||
T Consensus 16 ~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~ 95 (287)
T d1opja_ 16 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM 95 (287)
T ss_dssp GGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred HHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecc
Confidence 456777788999999999999974 58899999998766566789999998 999999 5678899999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++... ....++|.+++.|+.|||+||+||| ..+|+|||||
T Consensus 96 ~~g~l~~~l~~~-~~~~~~~~~~~~i~~qi~~gL~yLH---~~~iiHrDlK 142 (287)
T d1opja_ 96 TYGNLLDYLREC-NRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLA 142 (287)
T ss_dssp TTCBHHHHHHHS-CTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred cCcchHHHhhhc-cccchHHHHHHHHHHHHHHHHHHHH---HCCcccCccc
Confidence 999 7777643 2346899999999999999999999 7899999997
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.9e-20 Score=177.22 Aligned_cols=110 Identities=23% Similarity=0.306 Sum_probs=92.8
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC-------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN-------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~ 550 (599)
++|...+.||+|+||+||+|+++ ..||||+++... ....+|.+|+.+ +++||| ...+..++|||||
T Consensus 8 ~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~Ey~ 85 (276)
T d1uwha_ 8 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWC 85 (276)
T ss_dssp TCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred ccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEecC
Confidence 34566678999999999999874 359999996542 235679999998 999999 4567789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .++++... ..++|.+++.|+.|||+||+||| +.+|+|||||
T Consensus 86 ~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~gl~yLH---~~~ivHrDlK 131 (276)
T d1uwha_ 86 EGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLK 131 (276)
T ss_dssp CEEEHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred CCCCHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHh---cCCEeccccC
Confidence 999 88887533 35999999999999999999999 7899999997
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.79 E-value=1.1e-16 Score=158.71 Aligned_cols=301 Identities=25% Similarity=0.273 Sum_probs=219.0
Q ss_pred CCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEee
Q 007553 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDL 123 (599)
Q Consensus 44 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 123 (599)
.++++|||+++.++ .+|+. .++|++|+|++|+++ .+|.. +.+|++|++++|++... +. + .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh-h--ccccccccc
Confidence 47899999999998 67753 578999999999998 56755 46899999999998743 32 2 246999999
Q ss_pred ecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCccccc
Q 007553 124 SLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGP 203 (599)
Q Consensus 124 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 203 (599)
++|.+.. +|. ++.+++|++|++++|.+.... . ....+..+.+..+.... ...+..++.++.+++..|.....
T Consensus 106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~ 177 (353)
T d1jl5a_ 106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKL 177 (353)
T ss_dssp CSSCCSS-CCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC
T ss_pred ccccccc-ccc-hhhhccceeeccccccccccc-c---ccccccchhhccccccc--cccccccccceeccccccccccc
Confidence 9999984 454 678999999999999887432 2 24567777777665543 34577889999999999887642
Q ss_pred CchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEeccCcceeecCCcCccCC
Q 007553 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYL 283 (599)
Q Consensus 204 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 283 (599)
. . .....+.+...++.+. ..+ .+..++.|+.+++++|.... .+. ...++..+.+..+.+... + ...
T Consensus 178 ~-~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~---~~~ 243 (353)
T d1jl5a_ 178 P-D---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-P---ELP 243 (353)
T ss_dssp C-C---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-C---CCC
T ss_pred c-c---cccccccccccccccc-ccc-cccccccccccccccccccc-ccc---cccccccccccccccccc-c---ccc
Confidence 2 1 2233456666666554 333 46788999999999988763 332 346688888888877632 2 224
Q ss_pred CCCCEEECCCCCCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEEC
Q 007553 284 TNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDV 363 (599)
Q Consensus 284 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 363 (599)
..+...++..+.+.+.. . -.......++..+.+.+. ...+++|++|++++|+++ .+|.. +++|+.|++
T Consensus 244 ~~l~~~~~~~~~~~~l~-~---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L 311 (353)
T d1jl5a_ 244 QSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIA 311 (353)
T ss_dssp TTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred ccccccccccccccccc-c---ccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEEC
Confidence 66778888777665321 1 113445677777776632 234679999999999998 56643 578999999
Q ss_pred CCCcCcccCCccCCCCCeeecccCccce
Q 007553 364 SKNNLSGVIPKSVFRVPGLKWSENNLEV 391 (599)
Q Consensus 364 s~n~l~~~~~~~~~~~~~l~~~~n~~~~ 391 (599)
++|.++ .+|.....++.+++++|++..
T Consensus 312 ~~N~L~-~l~~~~~~L~~L~L~~N~L~~ 338 (353)
T d1jl5a_ 312 SFNHLA-EVPELPQNLKQLHVEYNPLRE 338 (353)
T ss_dssp CSSCCS-CCCCCCTTCCEEECCSSCCSS
T ss_pred CCCcCC-ccccccCCCCEEECcCCcCCC
Confidence 999998 467667778999999999874
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=4.3e-20 Score=176.76 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=92.0
Q ss_pred hccccce-ecccCCceEEEEEeC---CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC-------CCCCCcceeec
Q 007553 484 DFHIKYC-IGTGGYGSVYRAQLS---SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN-------SHTDNDDSSDE 548 (599)
Q Consensus 484 ~~~~~~~-lg~g~~g~v~~~~~~---~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e 548 (599)
++..... ||+|+||.||+|.++ ++..||||+++..... ..+|.+|+.+ +++||| ...+..++|||
T Consensus 9 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvmE 88 (285)
T d1u59a_ 9 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVME 88 (285)
T ss_dssp GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEE
T ss_pred CeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEEE
Confidence 4444453 999999999999864 3558999999765332 5679999998 999999 45567899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||++| .+++...+ ..++|.+++.|+.|||+||+||| +.+|+|||||
T Consensus 89 ~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~gL~ylH---~~~iiHrDlK 136 (285)
T d1u59a_ 89 MAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLA 136 (285)
T ss_dssp CCTTEEHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred eCCCCcHHHHhhccc--cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCcCc
Confidence 99999 88876433 35999999999999999999999 7899999996
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4.9e-20 Score=176.22 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=97.2
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC-------CCCCCcceeecccccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G 553 (599)
++|.....||+|+||+||+|..++++.||||++........+|.+|+.+ +++||| ...+..++||||+++|
T Consensus 17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~~g 96 (285)
T d1fmka3 17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKG 96 (285)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTC
T ss_pred HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecCCC
Confidence 4677778899999999999999888899999997765556789999998 999999 4567789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++.... ...++|.+++.||.|||+||+||| ..+|+||||+
T Consensus 97 ~l~~~~~~~~-~~~l~~~~~~~i~~~i~~gl~~LH---~~~ivH~DlK 140 (285)
T d1fmka3 97 SLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLR 140 (285)
T ss_dssp BHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred chhhhhhhcc-cccchHHHHHHHHHHHHHHHHHHh---hhheeccccc
Confidence 66665421 234899999999999999999999 7899999996
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.5e-18 Score=162.83 Aligned_cols=216 Identities=22% Similarity=0.214 Sum_probs=122.7
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccC-CccccCCCcCCEEeeec
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLI-PSSIGNLTNLTHLDLSL 125 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~ 125 (599)
+++++++..++ .+|..+ .+++++|++++|+++...+.+|.++++|++|++++|.+...+ +..|..+++++++.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 56777777776 556443 246777777777777555556777777888888777766543 35567777777777654
Q ss_pred -ccccccCCccccCCCcccEEecccCccCCCCcc-cccCCCCCCeeecccccccccCccccCCCC-CCCEEEccCCcccc
Q 007553 126 -NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPS-TLYHLNQLSTLYLAYNNLVGPLPKEVGNLK-NLDSLLLNRNNLTG 202 (599)
Q Consensus 126 -n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~ 202 (599)
|.+....++.+.++++|++|++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.|++.+|.++.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~ 167 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 167 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence 456656666677777777777777776543221 122233444444444455444444444433 56666666666654
Q ss_pred cCchhccCCCCCCE-EeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEe
Q 007553 203 PIPSTIGFLNLLDE-LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266 (599)
Q Consensus 203 ~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 266 (599)
..+..+. ...++. +.+++|.++...+..|.++++|++|++++|+++...+..|..+++|+.++
T Consensus 168 i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~ 231 (242)
T d1xwdc1 168 IHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 231 (242)
T ss_dssp ECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred ccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence 3333222 233333 33455555533334455666666666666666543333344444444333
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.78 E-value=1.3e-18 Score=161.46 Aligned_cols=187 Identities=24% Similarity=0.349 Sum_probs=81.3
Q ss_pred CCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccE
Q 007553 65 GSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVS 144 (599)
Q Consensus 65 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 144 (599)
+.+.+|+.|++.+|.++.. + .+..+++|++|++++|++.+.. .+.++++|+++++++|.++.. ..+.++++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~ 111 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (227)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccc
Confidence 3344455555555544422 1 2444455555555555444321 244445555555554444421 12444455555
Q ss_pred EecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcC
Q 007553 145 LFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRL 224 (599)
Q Consensus 145 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 224 (599)
++++++...+. ..+...+.++.+.++.+.+... ..+..+++|++|++++|.+.+.. .+..+++|+.|++++|++
T Consensus 112 l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l 185 (227)
T d1h6ua2 112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKI 185 (227)
T ss_dssp EECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred ccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCcc
Confidence 55554444322 1233344444455444444322 12334444555555544443211 234444445555544444
Q ss_pred cccCcccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEec
Q 007553 225 DGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267 (599)
Q Consensus 225 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 267 (599)
++. + .++.+++|++|++++|++++. + .++.+++|+.|++
T Consensus 186 ~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~l 224 (227)
T d1h6ua2 186 SDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTL 224 (227)
T ss_dssp CCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEE
T ss_pred CCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEe
Confidence 421 1 244445555555555544432 1 1444444444444
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.78 E-value=4.3e-19 Score=164.68 Aligned_cols=205 Identities=24% Similarity=0.352 Sum_probs=161.8
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeec
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 101 (599)
..+++.. +.+++.+ .+.++.+|+.|++.+|.|+. ++ .+..+++|++|++++|.+++..| |.++++|+++++++
T Consensus 22 ~~~~l~~-~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~ 94 (227)
T d1h6ua2 22 IKIAAGK-SNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (227)
T ss_dssp HHHHTTC-SSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHhCC-CCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence 4445554 5555433 34667889999999999984 44 48889999999999999885443 88899999999999
Q ss_pred CcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCc
Q 007553 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLP 181 (599)
Q Consensus 102 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 181 (599)
|.++.. ..+.++++|+.++++++...+. ..+...+.++.+.++++.+... ..+...++|++|++++|.+...
T Consensus 95 n~~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-- 166 (227)
T d1h6ua2 95 NPLKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL-- 166 (227)
T ss_dssp CCCSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--
T ss_pred cccccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--
Confidence 988743 4588899999999998887643 3467788999999999888754 3467788999999999988754
Q ss_pred cccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccC
Q 007553 182 KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS 245 (599)
Q Consensus 182 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 245 (599)
..+..+++|+.|++++|.+++. + .+..+++|+.|++++|++++. + .+..+++|+.|++++
T Consensus 167 ~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 167 TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence 3488899999999999998753 3 378889999999999999854 3 488999999999874
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.1e-19 Score=172.29 Aligned_cols=111 Identities=15% Similarity=0.052 Sum_probs=93.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
++|...+.||+|+||+||+|+. .+|+.||||++...... ...|.+|+.+ +++||| .+.+..++||||
T Consensus 5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy 84 (271)
T d1nvra_ 5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 84 (271)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence 4677778899999999999996 47999999999764322 4568899998 999999 467788999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++| .+++.. ...+++.+...++.||++||+||| +.+|+|||||
T Consensus 85 ~~gg~L~~~l~~---~~~l~e~~~~~i~~qi~~al~ylH---~~~IiHrDiK 130 (271)
T d1nvra_ 85 CSGGELFDRIEP---DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIK 130 (271)
T ss_dssp CTTEEGGGGSBT---TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred cCCCcHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHH---HcCCccCccc
Confidence 9999 888874 235899999999999999999999 7899999997
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=9.8e-20 Score=173.75 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=87.2
Q ss_pred ceecccCCceEEEEEeCC---CCEEEEEEecCCchh---hHHHHHHhhc--cccccC-------CCCCCcceeecccccc
Q 007553 489 YCIGTGGYGSVYRAQLSS---GRVVALKKLHRSETE---ELAFLETSST--DFRHYN-------SHTDNDDSSDEHLANN 553 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~~~---g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n-------~~~~~~~lv~e~~~~G 553 (599)
+.||+|+||+||+|.+++ ++.||||+++....+ ..+|.+|+.+ +++||| ...+..++||||+++|
T Consensus 13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g 92 (277)
T d1xbba_ 13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG 92 (277)
T ss_dssp EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCC
Confidence 469999999999998643 468999999654322 4679999998 999999 4556789999999999
Q ss_pred --cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 554 --EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 554 --~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++++.. ..++|.+++.|+.|||+||+||| +.+|+|||||
T Consensus 93 ~L~~~l~~~---~~l~~~~~~~i~~qi~~gl~ylH---~~~iiHrDlK 134 (277)
T d1xbba_ 93 PLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLA 134 (277)
T ss_dssp EHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred cHHHHHhhc---cCCCHHHHHHHHHHHHHHHhhHH---hCCcccCCCc
Confidence 8888742 35999999999999999999999 7899999997
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.9e-19 Score=171.30 Aligned_cols=112 Identities=25% Similarity=0.303 Sum_probs=93.2
Q ss_pred hhccccceecccCCceEEEEEeCCC-----CEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSG-----RVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g-----~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
..|...+.||+|+||.||+|.++.. ..||||++.....+ ..+|.+|+.+ +++||| ...+..++
T Consensus 7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~ 86 (283)
T d1mqba_ 7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 86 (283)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence 3567788999999999999997532 37999999765433 4579999998 999999 56788899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||||++| .+++... ...++|.+++.|+.|||+||+||| +.+|+|||||
T Consensus 87 v~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~i~~gl~~lH---~~~iiHrDlK 137 (283)
T d1mqba_ 87 ITEYMENGALDKFLREK--DGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLA 137 (283)
T ss_dssp EEECCTTEEHHHHHHHT--TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EEEecccCcchhhhhcc--cccccHHHHHHHHHHHHHhhhhcc---ccccccCccc
Confidence 99999999 5655543 245999999999999999999999 7899999997
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.5e-19 Score=170.78 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=91.7
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CC-CCCcceeecccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SH-TDNDDSSDEHLA 551 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~-~~~~~lv~e~~~ 551 (599)
++|...+.||+|+||.||+|.+ .|+.||||+++... ..++|.+|+++ +++||| .. .+.+++||||++
T Consensus 7 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~~-~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~ 84 (262)
T d1byga_ 7 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA 84 (262)
T ss_dssp GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC---HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCT
T ss_pred HHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccC
Confidence 4566677899999999999998 48899999997543 34679999998 999999 23 355799999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .++|+.+. ...++|.++++||.|||+||+||| ..+|+||||+
T Consensus 85 ~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~al~ylH---~~~ivH~dlk 130 (262)
T d1byga_ 85 KGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLA 130 (262)
T ss_dssp TEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred CCCHHHHHHhcC-CCCCCHHHHHHHHHHHHhhccccc---cCceeccccc
Confidence 99 88887432 235899999999999999999999 7899999996
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=6e-18 Score=158.67 Aligned_cols=219 Identities=21% Similarity=0.189 Sum_probs=168.1
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccC-CccCCCCCCCcEEEee
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSI-PLEFGNLKDLYDLRLQ 100 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~ 100 (599)
++++.++ ..++ .+|..+- +++++|++++|.|+...+.+|.++++|++|++++|.+...+ +..|.+++++++|.+.
T Consensus 11 ~~i~c~~-~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 11 RVFLCQE-SKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SEEEEES-CSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CEEEEeC-CCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 6777776 6666 6776552 57999999999998666668999999999999999887644 5578899999999987
Q ss_pred c-CcCCccCCccccCCCcCCEEeeecccccccCC-ccccCCCcccEEecccCccCCCCcccccCCC-CCCeeeccccccc
Q 007553 101 G-NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP-QEVGNLKNLVSLFLDNNNLTGPIPSTLYHLN-QLSTLYLAYNNLV 177 (599)
Q Consensus 101 ~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~ 177 (599)
. |.+....+..|.++++|+++++++|.+....+ ..+..++.+..+...++.+....+..|.+++ .++.|++++|++.
T Consensus 87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~ 166 (242)
T d1xwdc1 87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 166 (242)
T ss_dssp CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 5 67777777889999999999999999875433 3355667777777788888766566677665 7889999999998
Q ss_pred ccCccccCCCCCCCEE-EccCCcccccCchhccCCCCCCEEeCCCCcCcccCcccCCCCCCCCEEEccC
Q 007553 178 GPLPKEVGNLKNLDSL-LLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSS 245 (599)
Q Consensus 178 ~~~~~~l~~l~~L~~L-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 245 (599)
...+..+ ...++.++ .+++|.++...+..|..+++|+.|++++|+++...+..|.++++|+.+++.+
T Consensus 167 ~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 167 EIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp EECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred ccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 6554444 45565555 4677788765556789999999999999999865555677777776665543
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.4e-19 Score=170.08 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=93.2
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
.|...+.||+|+||+||+|.. .+|+.||||++..... ....+.+|+.+ +++||| ...+..++||||++
T Consensus 21 ~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~ 100 (293)
T d1yhwa1 21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLA 100 (293)
T ss_dssp TBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred ccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecC
Confidence 466677899999999999985 5799999999975433 24678999998 999999 46778899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++..+ .+++.+...++.||+.||+||| ..+|+|||||
T Consensus 101 gg~L~~~~~~~----~l~~~~~~~i~~qi~~aL~yLH---~~~iiHrDiK 143 (293)
T d1yhwa1 101 GGSLTDVVTET----CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIK 143 (293)
T ss_dssp TCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCc
Confidence 99 6666532 4899999999999999999999 7899999997
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=3.8e-19 Score=172.04 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=92.9
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
..|...+.||+|+||+||+|+. .+|+.||||++...... ...|.+|+.+ +++||| .+.+..++||
T Consensus 15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~ 94 (309)
T d1u5ra_ 15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 94 (309)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence 3477778899999999999985 57899999999764321 3568999998 999999 4677899999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||++| ..++.. ...++|.++..|+.||+.||+||| ..+|+|||||
T Consensus 95 E~~~~g~l~~~~~~---~~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHrDiK 142 (309)
T d1u5ra_ 95 EYCLGSASDLLEVH---KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVK 142 (309)
T ss_dssp ECCSEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCS
T ss_pred EecCCCchHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCC
Confidence 999999 444442 235899999999999999999999 7899999997
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3e-19 Score=169.39 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=86.8
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC----------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN----------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n----------~~~~~~~lv 546 (599)
++|...+.||+|+||+||+|.. .+|+.||||.+..... +...|.+|+.+ +++||| ...+.+++|
T Consensus 4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv 83 (269)
T d2java1 4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV 83 (269)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence 5677788999999999999985 5799999999976432 24568899998 999999 124567999
Q ss_pred ecccccc--cccccCC-CCCCCCChHHHHHHHHHHHHHHhhhhCC--CCccccccccC
Q 007553 547 DEHLANN--EHFLSAP-ENYERVDFSPDFSIADQSKKGFKLLADR--KYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~-~~~~~l~~~~~~~ia~~ia~gl~yLH~~--~~~~i~Hrdl~ 599 (599)
|||+++| .+++... .....+++.++..++.|||.||+|||+. ...+|+|||||
T Consensus 84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiK 141 (269)
T d2java1 84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLK 141 (269)
T ss_dssp EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CC
T ss_pred EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCc
Confidence 9999999 8887642 1234699999999999999999999943 23569999997
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=6.6e-19 Score=171.62 Aligned_cols=112 Identities=17% Similarity=0.099 Sum_probs=96.8
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
+.|...+.||+|+||+||+|.. .+|+.||||.++....+...+.+|+.+ .++||| .+.+.+++|||||+
T Consensus 5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~ 84 (321)
T d1tkia_ 5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFIS 84 (321)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCC
T ss_pred cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCC
Confidence 3456667899999999999985 468999999998776666678899998 999999 46788999999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++..+. ..+++.+...|+.||+.||+||| +.+|+||||+
T Consensus 85 gg~L~~~i~~~~--~~l~e~~~~~i~~qi~~al~yLH---~~~iiHrDlK 129 (321)
T d1tkia_ 85 GLDIFERINTSA--FELNEREIVSYVHQVCEALQFLH---SHNIGHFDIR 129 (321)
T ss_dssp CCBHHHHHTSSS--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred CCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HcCCCccccc
Confidence 99 88887532 34899999999999999999999 8899999996
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.9e-19 Score=171.21 Aligned_cols=111 Identities=20% Similarity=0.161 Sum_probs=94.2
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
.|.....||+|+||.||+|.. .+|+.||||++..... ..+.|.+|+++ +++||| .+.+..++|||||+
T Consensus 13 ~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~ 92 (288)
T d2jfla1 13 FWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCA 92 (288)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred CeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCC
Confidence 355567799999999999996 4689999999976543 35678999998 999999 46778899999999
Q ss_pred cc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| .+++.... ..+++.++..++.||++||+||| +.+|+|||||
T Consensus 93 ~g~L~~~~~~~~--~~l~e~~~~~i~~qi~~gL~ylH---~~~ivHrDiK 137 (288)
T d2jfla1 93 GGAVDAVMLELE--RPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLK 137 (288)
T ss_dssp TEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred CCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCEEEeecC
Confidence 99 77776432 34999999999999999999999 7899999997
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=5.4e-19 Score=171.11 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=99.7
Q ss_pred HHHHHHhhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------
Q 007553 476 EEMIQATEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN-------- 537 (599)
Q Consensus 476 ~~l~~at~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------- 537 (599)
.+++...++|...+.||+|+||.||+|+.. +++.||||++...... ..+|.+|+.+ +++|||
T Consensus 6 ~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~ 85 (301)
T d1lufa_ 6 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC 85 (301)
T ss_dssp HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred hhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeee
Confidence 344455678888889999999999999863 4578999999764322 5679999998 999999
Q ss_pred CCCCCcceeecccccc--cccccCCC---------------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCcccc
Q 007553 538 SHTDNDDSSDEHLANN--EHFLSAPE---------------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSY 594 (599)
Q Consensus 538 ~~~~~~~lv~e~~~~G--~~~l~~~~---------------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~ 594 (599)
...+..++||||+++| .++++... ....++|.+++.||.|||+||+||| ..+|+
T Consensus 86 ~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH---~~~iv 162 (301)
T d1lufa_ 86 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFV 162 (301)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCC
T ss_pred ccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcc---cCCeE
Confidence 5678899999999999 88876321 1235899999999999999999999 88999
Q ss_pred ccccC
Q 007553 595 YQRLY 599 (599)
Q Consensus 595 Hrdl~ 599 (599)
|||||
T Consensus 163 HrDlK 167 (301)
T d1lufa_ 163 HRDLA 167 (301)
T ss_dssp CSCCS
T ss_pred eeEEc
Confidence 99996
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4e-19 Score=167.86 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=94.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||+||+|+. .+|+.||||++...... ...+.+|+.+ +++||| .+.+..++||
T Consensus 6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm 85 (263)
T d2j4za1 6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL 85 (263)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence 4677778899999999999996 46899999998653221 4568899998 999999 5677789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.+...++.||++||+||| +.+|+|||||
T Consensus 86 Ey~~~g~L~~~l~~~---~~l~e~~~~~i~~qi~~al~~lH---~~~ivHrDiK 133 (263)
T d2j4za1 86 EYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCH---SKRVIHRDIK 133 (263)
T ss_dssp ECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred eecCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeeeec
Confidence 999999 7888742 34899999999999999999999 7899999997
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=9.6e-19 Score=169.20 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=88.5
Q ss_pred hhccccceecccCCceEEEEEeCCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------C----CCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------S----HTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------~----~~~~~~lv~e 548 (599)
+++...+.||+|+||.||+|++ +|+.||||+++........+..|+.. .++||| . ....+++|||
T Consensus 3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~E 81 (303)
T d1vjya_ 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD 81 (303)
T ss_dssp GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEe
Confidence 3455667899999999999998 58999999997543333233344444 789999 1 2235789999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCC-----CCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADR-----KYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~-----~~~~i~Hrdl~ 599 (599)
||++| .++|+.. .++|.++++++.|||+||+|||+. ..++|+|||||
T Consensus 82 y~~~g~L~~~l~~~----~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlK 135 (303)
T d1vjya_ 82 YHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLK 135 (303)
T ss_dssp CCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCC
T ss_pred cccCCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccC
Confidence 99999 8899853 399999999999999999999954 25899999997
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=5.2e-19 Score=172.80 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=95.7
Q ss_pred hhhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
.++|...+.||+|+||+||+|.. .+|+.||||+++..... ...+.+|+.+ .++||| .+.+..++|||
T Consensus 5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE 84 (322)
T d1s9ja_ 5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 84 (322)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence 45787788899999999999995 57899999999764322 4678999998 999999 46777999999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCc-cccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYR-KSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~-~i~Hrdl~ 599 (599)
||++| .+++..+ ..+++.+...++.||++||+||| .. +|+|||||
T Consensus 85 y~~gg~L~~~l~~~---~~l~~~~~~~~~~qil~aL~yLH---~~~~IiHRDiK 132 (322)
T d1s9ja_ 85 HMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVK 132 (322)
T ss_dssp CCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCS
T ss_pred cCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHH---HhCCEEccccC
Confidence 99999 8888742 24899999999999999999999 54 89999997
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.74 E-value=9.3e-19 Score=172.32 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=96.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
++|...+.||+|+||.||+|.. .+|+.||||++...... ...+.+|+.+ +++||| .+.+..++|||||
T Consensus 26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~ 105 (350)
T d1koaa2 26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 105 (350)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence 4677778899999999999995 57999999999765433 5678899998 999999 4678899999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++..+. ..+++.+...|+.||+.||+||| +.+|+|||||
T Consensus 106 ~gg~L~~~l~~~~--~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHrDiK 151 (350)
T d1koaa2 106 SGGELFEKVADEH--NKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLK 151 (350)
T ss_dssp CSCBHHHHHTCTT--SCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred CCCCHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---hcCCeeeeec
Confidence 999 78886433 34999999999999999999999 7899999997
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.4e-18 Score=169.92 Aligned_cols=114 Identities=20% Similarity=0.274 Sum_probs=91.2
Q ss_pred hhccccceecccCCceEEEEEeCC-C-----CEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCCCc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSS-G-----RVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTDND 543 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~-g-----~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~~~ 543 (599)
++|...+.||+|+||+||+|+... + ..||||++..... ....|.+|+.+ ++ +||| ...+..
T Consensus 37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~ 116 (325)
T d1rjba_ 37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPI 116 (325)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeE
Confidence 567777889999999999998632 2 3699999865432 24678889888 77 8999 567889
Q ss_pred ceeecccccc--cccccCCCC--------------------CCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPEN--------------------YERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~--------------------~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|||||++| .++|+.++. ...++|.+++.|+.|||+||+||| +.+|+|||||
T Consensus 117 ~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH---~~~IiHRDlK 191 (325)
T d1rjba_ 117 YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLA 191 (325)
T ss_dssp EEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCS
T ss_pred EEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCc
Confidence 9999999999 888875421 235899999999999999999999 7899999997
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.2e-20 Score=194.98 Aligned_cols=111 Identities=27% Similarity=0.241 Sum_probs=71.6
Q ss_pred CCCcEEeeCCCCCCeec-CCcccCCCCCCCEEEcccCcCcc----cCCcCCCCCCCCCEEeccCCccccc----CCccCC
Q 007553 19 PNLVTFRIWGTRFLSGR-IPSETGALSRLKVLDLSYNRLTG----TIPSEIGSLRDLLELNLSYNILNGS----IPLEFG 89 (599)
Q Consensus 19 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~----~p~~~~ 89 (599)
++|+.|++++ +.+++. +.+-+..++++++|+|++|.++. .++..+..+++|++|||++|.++.. +...+.
T Consensus 2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence 3577888876 777653 22234556777888888887763 2334456777888888888877532 122222
Q ss_pred -CCCCCcEEEeecCcCCcc----CCccccCCCcCCEEeeecccccc
Q 007553 90 -NLKDLYDLRLQGNKLDGL----IPSSIGNLTNLTHLDLSLNQLSG 130 (599)
Q Consensus 90 -~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~i~~ 130 (599)
...+|++|+|++|++++. ++..+..+++|++|++++|.+..
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 126 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence 234688888888877643 34456677888888888887653
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.73 E-value=2.2e-18 Score=169.81 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=95.4
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch-hhHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-EELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
++|...+.||+|+||.||+|.- .+|+.||||++..... +...+.+|+.+ +++||| .+.+.+++||||+
T Consensus 29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~ 108 (352)
T d1koba_ 29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 108 (352)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence 3577778899999999999995 5799999999976543 35678889998 999999 4677889999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++..+ ...+++.+...|+.||+.||+||| ..+|+|||||
T Consensus 109 ~gg~L~~~~~~~--~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHRDiK 154 (352)
T d1koba_ 109 SGGELFDRIAAE--DYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIK 154 (352)
T ss_dssp CCCBHHHHTTCT--TCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred CCChHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccc
Confidence 999 6666643 335999999999999999999999 7899999997
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=9.8e-19 Score=169.11 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=90.4
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
.|...+.||+|+||+||+|.. .+|+.||||++...... ...+.+|+.+ +++||| .+.+..++||||+
T Consensus 10 ~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~ 89 (307)
T d1a06a_ 10 IYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLV 89 (307)
T ss_dssp TEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred ceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence 366678899999999999996 46899999999765322 3568889988 999999 4677789999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .+++..+ ..+++.+...++.||+.||+||| ..+|+|||||
T Consensus 90 ~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiK 134 (307)
T d1a06a_ 90 SGGELFDRIVEK---GFYTERDASRLIFQVLDAVKYLH---DLGIVHRDLK 134 (307)
T ss_dssp CSCBHHHHHHTC---SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred CCCcHHHhhhcc---cCCCHHHHHHHHHHHHHHHHhhh---hceeeeEEec
Confidence 999 8888742 35999999999999999999999 7899999996
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2e-18 Score=167.38 Aligned_cols=107 Identities=25% Similarity=0.307 Sum_probs=88.2
Q ss_pred cceecccCCceEEEEEeCCC----CEEEEEEecCCch--hhHHHHHHhhc--cccccC---------CCCCCcceeeccc
Q 007553 488 KYCIGTGGYGSVYRAQLSSG----RVVALKKLHRSET--EELAFLETSST--DFRHYN---------SHTDNDDSSDEHL 550 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~~g----~~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n---------~~~~~~~lv~e~~ 550 (599)
.++||+|+||+||+|.+.++ ..||||+++.... ...+|.+|+++ +++||| ......++|||||
T Consensus 32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~ 111 (311)
T d1r0pa_ 32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM 111 (311)
T ss_dssp EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence 45799999999999997432 3689999975332 24679999998 999999 2345689999999
Q ss_pred ccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++| .++++.+. ..++|.++++|+.|||+||.||| .++|+|||||
T Consensus 112 ~~g~l~~~~~~~~--~~~~~~~~~~i~~qia~gL~~lH---~~~iiHrDLK 157 (311)
T d1r0pa_ 112 KHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLA 157 (311)
T ss_dssp TTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred ecCchhhhhcccc--ccchHHHHHHHHHHHHHhhhhhc---ccCcccCCcc
Confidence 999 77777543 34789999999999999999999 8899999996
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.3e-18 Score=164.90 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=88.6
Q ss_pred ccceecccCCceEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHhhc--cccccC------------CCCCCcceeec
Q 007553 487 IKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSE---TEELAFLETSST--DFRHYN------------SHTDNDDSSDE 548 (599)
Q Consensus 487 ~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~---~~~~~f~~e~~~--~l~H~n------------~~~~~~~lv~e 548 (599)
....||+|+||+||+|.. .+++.||||++.... .+...|.+|+++ +++||| .....+++|||
T Consensus 13 ~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE 92 (270)
T d1t4ha_ 13 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE 92 (270)
T ss_dssp EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEE
T ss_pred eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEe
Confidence 345699999999999996 468899999986542 224578999998 999999 12345789999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .+++... ..+++.++..++.||++||+|||+ ..++|+|||||
T Consensus 93 ~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~gl~yLH~-~~~~IiHrDiK 141 (270)
T d1t4ha_ 93 LMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHT-RTPPIIHRDLK 141 (270)
T ss_dssp CCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT-SSSCCCCSCCC
T ss_pred CCCCCcHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHHH-CCCCEEeCCcC
Confidence 99999 8888742 358999999999999999999993 23459999997
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.4e-18 Score=167.56 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=94.1
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch-------hhHHHHHHhhc--cccccC--------CCCCCcce
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET-------EELAFLETSST--DFRHYN--------SHTDNDDS 545 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~-------~~~~f~~e~~~--~l~H~n--------~~~~~~~l 545 (599)
.|...+.||+|+||+||+|.. .+|+.||||++..... ....|.+|+.+ +++||| .+.+..++
T Consensus 11 ~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~i 90 (293)
T d1jksa_ 11 YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVIL 90 (293)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred CEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 466678899999999999996 5799999999864321 14578999998 999999 56778899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||||++| .+++..+ ..+++.+...++.||+.||+||| +.+|+|||||
T Consensus 91 v~E~~~gg~L~~~i~~~---~~l~~~~~~~~~~qi~~al~yLH---~~~ivHrDiK 140 (293)
T d1jksa_ 91 ILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLK 140 (293)
T ss_dssp EEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred EEEcCCCccccchhccc---cccchhHHHHHHHHHHHHHHhhh---hcceeecccc
Confidence 99999999 8888743 35999999999999999999999 8899999996
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.9e-18 Score=163.56 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=92.8
Q ss_pred hhccccceecccCCceEEEEEeCC----CCEEEEEEecCCchh--hHHHHHHhhc--cccccC-------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLSS----GRVVALKKLHRSETE--ELAFLETSST--DFRHYN-------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~~----g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||+|.... +..||||+++....+ ...|.+|+.+ +++||| ...+..++||
T Consensus 7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv~ 86 (273)
T d1mp8a_ 7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIM 86 (273)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEE
T ss_pred HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEEE
Confidence 456667889999999999998642 357899998754333 4679999998 999999 4567889999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++.... ..++|.+++.++.|||+||+||| +.+|+|||||
T Consensus 87 E~~~~g~l~~~~~~~~--~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDlK 135 (273)
T d1mp8a_ 87 ELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIA 135 (273)
T ss_dssp ECCTTEEHHHHHHHTT--TTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred EeccCCcHHhhhhccC--CCCCHHHHHHHHHHHHHHhhhhc---ccCeeccccc
Confidence 999999 66666432 35899999999999999999999 8899999996
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=2.8e-17 Score=149.94 Aligned_cols=102 Identities=31% Similarity=0.442 Sum_probs=42.8
Q ss_pred CCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEe
Q 007553 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLF 146 (599)
Q Consensus 67 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 146 (599)
+.+|++|++++|.++.. + .+..+++|++|++++|++++.. .++.+++|++|++++|++++ ++ .+.++++|+.|+
T Consensus 45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence 34444555555444422 1 2344444555555554444321 23444444444444444442 11 244444444444
Q ss_pred cccCccCCCCcccccCCCCCCeeecccccc
Q 007553 147 LDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176 (599)
Q Consensus 147 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 176 (599)
+++|.+... ..+..++.|+.+++++|.+
T Consensus 119 l~~~~~~~~--~~l~~l~~l~~l~~~~n~l 146 (210)
T d1h6ta2 119 LEHNGISDI--NGLVHLPQLESLYLGNNKI 146 (210)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCC
T ss_pred ccccccccc--ccccccccccccccccccc
Confidence 444443321 1233344444444444433
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.2e-18 Score=166.66 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=94.6
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||+||+|.. .+|+.||||++..... ....+.+|+.+ +++||| .+.+..++||
T Consensus 8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm 87 (288)
T d1uu3a_ 8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 87 (288)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence 4677788999999999999996 5799999999965321 13568899998 999999 4667789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+ ..+++.+...++.||+.||+||| +.+|+|||||
T Consensus 88 Ey~~gg~L~~~~~~~---~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiK 135 (288)
T d1uu3a_ 88 SYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLK 135 (288)
T ss_dssp CCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EccCCCCHHHhhhcc---CCCCHHHHHHHHHHHHHHHHhhc---cccEEcCcCC
Confidence 999999 7777742 35899999999999999999999 8899999997
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=3.8e-17 Score=147.75 Aligned_cols=179 Identities=27% Similarity=0.390 Sum_probs=134.6
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeec
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 101 (599)
....+.. +.+++.++ ...++++++|++++|.++. ++ .+..+++|++|++++|++++..| |.++++|++|++++
T Consensus 21 i~~~l~~-~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~ 93 (199)
T d2omxa2 21 MKTVLGK-TNVTDTVS--QTDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 93 (199)
T ss_dssp HHHHTTC-SSTTSEEC--HHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHhCC-CCCCCccC--HHHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCcccccccccc
Confidence 3444554 55554432 3456788899999988874 33 47788899999999998885433 78888999999998
Q ss_pred CcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCc
Q 007553 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLP 181 (599)
Q Consensus 102 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 181 (599)
|.+... + .+.++++|+.|++++|.+... +.+.++++|+.|++++|++.. + +.+..+++|+.|++.+|++.+.
T Consensus 94 n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-- 165 (199)
T d2omxa2 94 NQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-- 165 (199)
T ss_dssp SCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--
T ss_pred cccccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--
Confidence 887743 3 488889999999988887743 347788899999999988864 2 3578888999999999888754
Q ss_pred cccCCCCCCCEEEccCCcccccCchhccCCCCCCEE
Q 007553 182 KEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDEL 217 (599)
Q Consensus 182 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 217 (599)
..+.++++|++|++++|.+++ ++ .+..+++|+.|
T Consensus 166 ~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 166 KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence 347888999999999998875 33 46778888765
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.7e-18 Score=168.22 Aligned_cols=114 Identities=18% Similarity=0.287 Sum_probs=92.6
Q ss_pred hhccccceecccCCceEEEEEeC-CCC--EEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS-SGR--VVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~-~g~--~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~~~~lv 546 (599)
++|...+.||+|+||+||+|.+. +|. .||||++..... ..++|.+|+++ ++ +||| ...+.+++|
T Consensus 10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV 89 (309)
T d1fvra_ 10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 89 (309)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence 46777788999999999999974 343 578898865432 24579999998 77 7999 567789999
Q ss_pred ecccccc--cccccCC-------------CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAP-------------ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~-------------~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||+++| .++|+.. .....++|.+++.++.|||+||.||| +.+|+||||+
T Consensus 90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH---~~~iiHrDlk 154 (309)
T d1fvra_ 90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLA 154 (309)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhh---cCCccccccc
Confidence 9999999 8888743 12356999999999999999999999 7899999996
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.3e-18 Score=166.25 Aligned_cols=114 Identities=22% Similarity=0.259 Sum_probs=93.5
Q ss_pred hhccccceecccCCceEEEEEe------CCCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCCCc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL------SSGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTDND 543 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~~~ 543 (599)
+++...+.||+|+||.||+|++ .+++.||||+++.... +..+|.+|+.+ ++ +||| ...+..
T Consensus 23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~ 102 (311)
T d1t46a_ 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT 102 (311)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEE
Confidence 4566677899999999999985 2457899999976543 35678899888 67 7999 566779
Q ss_pred ceeecccccc--cccccCCC---------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPE---------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~---------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|||||++| .++++... ....++|.++.+|+.|||+||+||| ..+|+|||||
T Consensus 103 ~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH---~~~ivHrDLK 172 (311)
T d1t46a_ 103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLA 172 (311)
T ss_dssp EEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred EEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccc
Confidence 9999999999 88876432 2236899999999999999999999 7899999996
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=4e-17 Score=147.64 Aligned_cols=141 Identities=25% Similarity=0.313 Sum_probs=73.9
Q ss_pred EEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccc
Q 007553 49 LDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL 128 (599)
Q Consensus 49 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i 128 (599)
+.+..+.+++.++ ...+.++++|++++|.++.. ..+..+++|++|++++|++++.. .+.++++|++|++++|.+
T Consensus 23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~ 96 (199)
T d2omxa2 23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQI 96 (199)
T ss_dssp HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccc
Confidence 3455555554332 23456666677766666532 23555666666666666665432 256666666666666655
Q ss_pred cccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCccccCCCCCCCEEEccCCccc
Q 007553 129 SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLT 201 (599)
Q Consensus 129 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 201 (599)
... + .+.++++|+.|++++|.+... ..+..+++|+.|++++|.+... +.+..+++|+.|++.+|.++
T Consensus 97 ~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~ 163 (199)
T d2omxa2 97 ADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVT 163 (199)
T ss_dssp CCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC
T ss_pred ccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc--cccccccccccccccccccc
Confidence 532 2 255556666666655555432 2344455555555555544321 23444444555544444443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=3.6e-17 Score=149.23 Aligned_cols=180 Identities=27% Similarity=0.347 Sum_probs=134.5
Q ss_pred eeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcC
Q 007553 25 RIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKL 104 (599)
Q Consensus 25 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 104 (599)
.+.. +.+.+.++. .++.+|+.|++++|.++. ++ .+..+++|++|+|++|++++.. .++.+++|++|++++|++
T Consensus 30 ~l~~-~~~~~~~~~--~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i 102 (210)
T d1h6ta2 30 NLKK-KSVTDAVTQ--NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV 102 (210)
T ss_dssp HTTC-SCTTSEECH--HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred HhCc-CccCCccCH--HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence 4443 444444332 346788888888888874 33 3777888999999988888543 367888899999988888
Q ss_pred CccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeecccccccccCcccc
Q 007553 105 DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV 184 (599)
Q Consensus 105 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 184 (599)
++. | .+..+++|+.|++++|.+... ..+..+++|+.+++++|.+++. ..+..+++|+++++++|++.+. + .+
T Consensus 103 ~~l-~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l 174 (210)
T d1h6ta2 103 KDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PL 174 (210)
T ss_dssp CCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GG
T ss_pred ccc-c-ccccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-c-cc
Confidence 753 3 578888899998888887632 4577888889999888888753 3466788889999988888754 2 37
Q ss_pred CCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCC
Q 007553 185 GNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSH 221 (599)
Q Consensus 185 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 221 (599)
.++++|++|++++|.++. ++ .+..+++|+.|+|++
T Consensus 175 ~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred cCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 888899999999988874 44 578888899888864
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2e-20 Score=193.38 Aligned_cols=327 Identities=20% Similarity=0.199 Sum_probs=197.7
Q ss_pred CCCCEEEcccCcCcccC-CcCCCCCCCCCEEeccCCcccc----cCCccCCCCCCCcEEEeecCcCCcc----CCcccc-
Q 007553 44 SRLKVLDLSYNRLTGTI-PSEIGSLRDLLELNLSYNILNG----SIPLEFGNLKDLYDLRLQGNKLDGL----IPSSIG- 113 (599)
Q Consensus 44 ~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~----~~~~~~- 113 (599)
.+|+.||++++++++.. ...+..+++|++|+|++|.++. .++..+..+++|++|+|++|++++. +...+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 36899999999998532 2334568999999999999874 2344567889999999999998642 122232
Q ss_pred CCCcCCEEeeeccccccc----CCccccCCCcccEEecccCccCCCCccc----c-------------------------
Q 007553 114 NLTNLTHLDLSLNQLSGR----LPQEVGNLKNLVSLFLDNNNLTGPIPST----L------------------------- 160 (599)
Q Consensus 114 ~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~i~~~~~~~----l------------------------- 160 (599)
...+|++|++++|.+++. ++..+..+++|++|++++|.+....... +
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 235799999999998754 4566788999999999999876321111 1
Q ss_pred ----cCCCCCCeeeccccccccc----Ccccc-CCCCCCCEEEccCCccccc----CchhccCCCCCCEEeCCCCcCccc
Q 007553 161 ----YHLNQLSTLYLAYNNLVGP----LPKEV-GNLKNLDSLLLNRNNLTGP----IPSTIGFLNLLDELRLSHNRLDGP 227 (599)
Q Consensus 161 ----~~l~~L~~L~l~~n~~~~~----~~~~l-~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 227 (599)
.....++.+.++.+..... ....+ ........+++..+.+... ....+.....++.+++.+|.+...
T Consensus 162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~ 241 (460)
T d1z7xw1 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence 1122334444443332210 00001 1112334455554443221 112234456677777777765421
Q ss_pred -----CcccCCCCCCCCEEEccCCcCCCC----CCcccCCCCCCCEEeccCcceeecCCcC-----ccCCCCCCEEECCC
Q 007553 228 -----IPPTIGNLTYLTSLDLSSNQLSGL----LPREVGNLKYLDSLSLDRNNLIGPIPPT-----IGYLTNLTSLNLGY 293 (599)
Q Consensus 228 -----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~~~~~~L~~L~ls~ 293 (599)
..........++.+++++|.+... ....+...+.++.+++++|.++...... ......|+.+++++
T Consensus 242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~ 321 (460)
T d1z7xw1 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 321 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 223345566788888888776532 1223445677788888887775421111 12245688888888
Q ss_pred CCCccCCCc----cCcCCCCCCEEEcccCcCccC----CCcccc-CCCCCCEEeCCCcccccc----CCcccCCCCCCCE
Q 007553 294 NQLNSSIPP----ELMNCSQLQNLAVNHNSLSGS----IPSEIG-NLIHLRQLDLSHNFINGT----IPSQLGKIPNVSE 360 (599)
Q Consensus 294 n~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~ 360 (599)
|.++..... .+..+++|++|+|++|.+++. ++..+. ..+.|++|++++|.++.. +...+...++|+.
T Consensus 322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 401 (460)
T d1z7xw1 322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 401 (460)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence 877644222 234456788888888877542 222232 356688888888887642 3344555677888
Q ss_pred EECCCCcCcc
Q 007553 361 VDVSKNNLSG 370 (599)
Q Consensus 361 L~ls~n~l~~ 370 (599)
||+++|+++.
T Consensus 402 L~Ls~N~i~~ 411 (460)
T d1z7xw1 402 LDLSNNCLGD 411 (460)
T ss_dssp EECCSSSCCH
T ss_pred EECCCCcCCH
Confidence 8888887764
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=1.2e-17 Score=150.24 Aligned_cols=172 Identities=22% Similarity=0.246 Sum_probs=94.4
Q ss_pred EEeCCCCcCcccCcccCCCCCCCCEEEccCCcCCCC-CCcccCCCCCCCEEeccCcceeecCCcCccCCCCCCEEECCCC
Q 007553 216 ELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL-LPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYN 294 (599)
Q Consensus 216 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n 294 (599)
.++.++++++ .+|..+. +++++|+|++|.|++. .+..|..+++|+.|+|++|.+.+..+..+..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 4555555555 3443331 4566666666666542 2344555666666666666666555555666666666666666
Q ss_pred CCccCCCccCcCCCCCCEEEcccCcCccCCCccccCCCCCCEEeCCCccccccCCcccCCCCCCCEEECCCCcCcccCCc
Q 007553 295 QLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPK 374 (599)
Q Consensus 295 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 374 (599)
++....+..|.++++|+.|+|++|.+++..+.+|..+++|++|++++|.+.......+ -...++.+.+..+.+++..|.
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~ 167 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCCh
Confidence 6665555556666666666666666665555556666666666666666553221111 011233344555566666665
Q ss_pred cCCCCCeeecccCccce
Q 007553 375 SVFRVPGLKWSENNLEV 391 (599)
Q Consensus 375 ~~~~~~~l~~~~n~~~~ 391 (599)
.+......+++.|.+.+
T Consensus 168 ~l~~~~l~~L~~n~l~C 184 (192)
T d1w8aa_ 168 KVRDVQIKDLPHSEFKC 184 (192)
T ss_dssp TTTTSBGGGSCTTTCCC
T ss_pred hhcCCEeeecCHhhCcC
Confidence 55554445555555544
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.6e-18 Score=164.85 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=83.7
Q ss_pred hhccccceecccCCceEEEEEeC--CC--CEEEEEEecCCch----hhHHHHHHhhc--cccccC-------CCCCCcce
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS--SG--RVVALKKLHRSET----EELAFLETSST--DFRHYN-------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~--~g--~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n-------~~~~~~~l 545 (599)
++|.....||+|+||+||+|.+. ++ ..||||++..... ...+|.+|+.+ +++||| ...+..++
T Consensus 8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~l 87 (273)
T d1u46a_ 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKM 87 (273)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchhe
Confidence 45666778999999999999863 23 3789999865421 24679999998 999999 34467899
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||+++| .+++..+. ..++|..+++++.|||+||+||| +.+|+|||||
T Consensus 88 v~e~~~~~~l~~~~~~~~--~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDik 138 (273)
T d1u46a_ 88 VTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLA 138 (273)
T ss_dssp EEECCTTCBHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred eeeeecCcchhhhhhccc--CCCCHHHHHHHHHHHHHHHHHhh---hCCEeeeeec
Confidence 99999999 66665432 34999999999999999999999 7899999996
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=2.8e-18 Score=164.03 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=91.1
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHHhhc--cccccC--------C----CCCCcc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLETSST--DFRHYN--------S----HTDNDD 544 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e~~~--~l~H~n--------~----~~~~~~ 544 (599)
+|...+.||+|+||.||+|.. .+|+.||||.++..... ...|.+|+.+ .++||| . .....+
T Consensus 8 rY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~ 87 (277)
T d1o6ya_ 8 RYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPY 87 (277)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred eeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEE
Confidence 466678899999999999984 57999999999754321 3568999998 999999 1 123378
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||||+++| .+++... ..++|.+...++.||++||+||| +.+|+|||||
T Consensus 88 lvmE~~~g~~L~~~~~~~---~~l~~~~~~~i~~qi~~al~~lH---~~~iiHrDiK 138 (277)
T d1o6ya_ 88 IVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSH---QNGIIHRDVK 138 (277)
T ss_dssp EEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred EEEECCCCCEehhhhccc---CCCCHHHHHHHHHHHHHHHHHHH---hCCccCcccc
Confidence 999999999 7677642 35899999999999999999999 7899999997
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.71 E-value=3e-18 Score=163.10 Aligned_cols=111 Identities=14% Similarity=0.034 Sum_probs=93.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----------hHHHHHHhhc--ccc-ccC--------CCC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----------ELAFLETSST--DFR-HYN--------SHT 540 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----------~~~f~~e~~~--~l~-H~n--------~~~ 540 (599)
++|...+.||+|+||+||+|+. .+|+.||||++...... ...+.+|+.+ +++ ||| .+.
T Consensus 3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 82 (277)
T d1phka_ 3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN 82 (277)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence 3577778899999999999985 57999999998654211 2358889988 887 999 567
Q ss_pred CCcceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+..++|||||++| .++++.+ ..+++.+...++.||++||+||| ..+|+||||+
T Consensus 83 ~~~~ivmE~~~~g~L~~~l~~~---~~l~e~~~~~~~~qi~~al~~lH---~~~ivHrDlk 137 (277)
T d1phka_ 83 TFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVICALH---KLNIVHRDLK 137 (277)
T ss_dssp SEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred cceEEEEEcCCCchHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HcCCcccccc
Confidence 7889999999999 8888742 35899999999999999999999 7899999996
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.8e-18 Score=164.72 Aligned_cols=114 Identities=19% Similarity=0.284 Sum_probs=94.3
Q ss_pred hhccccceecccCCceEEEEEeC------CCCEEEEEEecCCchh--hHHHHHHhhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSETE--ELAFLETSST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n--------~~~~~~~ 544 (599)
++|...+.||+|+||+||+|.+. +++.||||+++..... ...|.+|+.+ +++||| ...+..+
T Consensus 20 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~ 99 (308)
T d1p4oa_ 20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTL 99 (308)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCE
T ss_pred HHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCcee
Confidence 56666788999999999999863 3578999999764322 4569999998 999999 5678899
Q ss_pred eeecccccc--cccccCC-------CCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAP-------ENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~-------~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|||||++| .+++..+ .....++|.++.+|+.|||+||+||| ..+|+|||||
T Consensus 100 lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH---~~~ivHrDlk 160 (308)
T d1p4oa_ 100 VIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLA 160 (308)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCS
T ss_pred EEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeeceEc
Confidence 999999999 7777632 12245799999999999999999999 7899999996
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.3e-18 Score=164.80 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=88.2
Q ss_pred hhhccccceecccCCceEEEEEeC------CCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC---------CCCC
Q 007553 482 TEDFHIKYCIGTGGYGSVYRAQLS------SGRVVALKKLHRSET--EELAFLETSST--DF-RHYN---------SHTD 541 (599)
Q Consensus 482 t~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n---------~~~~ 541 (599)
.++|...+.||+|+||.||+|... +++.||||+++.... +.++|.+|+.. ++ +||| ...+
T Consensus 12 ~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~ 91 (299)
T d1ywna1 12 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 91 (299)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTS
T ss_pred HHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCC
Confidence 456777788999999999999852 346899999975432 24567777776 55 6777 3455
Q ss_pred Ccceeecccccc--cccccCCC-------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAPE-------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+++|||||++| .++++.+. ....++|.+++.++.|||+||+||| +.+|+|||||
T Consensus 92 ~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~ivHrDlK 161 (299)
T d1ywna1 92 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLA 161 (299)
T ss_dssp CCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred eEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHH---hCCCcCCcCC
Confidence 689999999999 88886432 1245899999999999999999999 7899999997
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.3e-18 Score=164.54 Aligned_cols=113 Identities=25% Similarity=0.289 Sum_probs=93.6
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e 548 (599)
++|...+.||+|+||+||+|.. .+|+.||||+++..... ...+.+|+.+ +++||| .+++..++|||
T Consensus 2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e 81 (298)
T d1gz8a_ 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 81 (298)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence 4677778899999999999995 57999999999654322 4678999998 999999 56778999999
Q ss_pred ccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+.+| .+++..+ ....+++.++..++.||+.||+||| +.+|+|||||
T Consensus 82 ~~~~~~~~~~~~~-~~~~l~e~~~~~~~~qil~~L~yLH---~~~IiHrDiK 129 (298)
T d1gz8a_ 82 FLHQDLKKFMDAS-ALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLK 129 (298)
T ss_dssp CCSEEHHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred ecCCchhhhhhhh-cccCCCHHHHHHHHHHHHHHHHHhh---cCCEEccccC
Confidence 99988 6666532 2345999999999999999999999 7899999997
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.70 E-value=8.1e-18 Score=151.36 Aligned_cols=128 Identities=29% Similarity=0.372 Sum_probs=72.6
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccC-CccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeec
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSI-PLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSL 125 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 125 (599)
++++++++.++ .+|..+ .+++++|+|++|+++..+ +..|.++++|++|+|++|.+....+..|..+++|++|++++
T Consensus 11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 45566666665 445433 145666666666665322 34455566666666666666555555555666666666666
Q ss_pred ccccccCCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccccc
Q 007553 126 NQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 126 n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 177 (599)
|++....++.|.++++|++|+|++|+++...+..|..+++|++|+|++|.+.
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 6666555555556666666666666655554555555555555555555543
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=5.5e-18 Score=165.15 Aligned_cols=111 Identities=17% Similarity=0.265 Sum_probs=89.4
Q ss_pred hccccceecccCCceEEEEEeC-CCC----EEEEEEecCCch--hhHHHHHHhhc--cccccC-------CCCCCcceee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLS-SGR----VVALKKLHRSET--EELAFLETSST--DFRHYN-------SHTDNDDSSD 547 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~-~g~----~vavK~l~~~~~--~~~~f~~e~~~--~l~H~n-------~~~~~~~lv~ 547 (599)
+|...+.||+|+||+||+|... +|+ .||||++..... ..++|.+|+.+ +++||| ...+..++|+
T Consensus 10 dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v~ 89 (317)
T d1xkka_ 10 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT 89 (317)
T ss_dssp TEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEE
T ss_pred HCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEEE
Confidence 5777889999999999999863 454 589999875433 25689999998 999999 3456778999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++..+ ...++|.++++||.|||+||+||| ..+|+|||||
T Consensus 90 e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~qi~~gl~yLH---~~~iiHrDlK 138 (317)
T d1xkka_ 90 QLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLA 138 (317)
T ss_dssp ECCTTCBHHHHHHHT--SSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred EeccCCccccccccc--ccCCCHHHHHHHHHHHHHHHHHHH---HcCcccCcch
Confidence 999999 6666643 345899999999999999999999 7899999997
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=7.2e-18 Score=163.68 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=93.5
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||+||+|+. .+|+.||||+++.... ....+.+|+.+ .++||| .+.+..++||
T Consensus 4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm 83 (316)
T d1fota_ 4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 83 (316)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence 5677788899999999999995 5699999999965321 24578899988 999999 5678899999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||++| .+++..+ ..+++.+...++.||+.||+||| +.+|+|||||
T Consensus 84 E~~~gg~l~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH---~~~iiHrDiK 131 (316)
T d1fota_ 84 DYIEGGELFSLLRKS---QRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLK 131 (316)
T ss_dssp CCCCSCBHHHHHHHT---SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCC
T ss_pred eecCCcccccccccc---ccccccHHHHHHHHHHHhhhhhc---cCcEEccccC
Confidence 999999 6666532 34788888999999999999999 8899999997
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.2e-17 Score=161.38 Aligned_cols=114 Identities=21% Similarity=0.218 Sum_probs=87.0
Q ss_pred hhccccceecccCCceEEEEEeC--------CCCEEEEEEecCCch--hhHHHHHHhhc--cc-cccC--------CCCC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQLS--------SGRVVALKKLHRSET--EELAFLETSST--DF-RHYN--------SHTD 541 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~~--------~g~~vavK~l~~~~~--~~~~f~~e~~~--~l-~H~n--------~~~~ 541 (599)
++|...+.||+|+||.||+|+.. ++..||||+++.... +..++.+|... ++ +||| .+.+
T Consensus 13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~ 92 (299)
T d1fgka_ 13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG 92 (299)
T ss_dssp GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCC
Confidence 35656678999999999999852 235799999976543 24677777766 55 8999 5677
Q ss_pred Ccceeecccccc--cccccCCC-------------CCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 542 NDDSSDEHLANN--EHFLSAPE-------------NYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 542 ~~~lv~e~~~~G--~~~l~~~~-------------~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
..++|||||++| .+++..+. ....++|.++++++.|||+||+||| ..+|+|||||
T Consensus 93 ~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH---~~~ivHrDiK 162 (299)
T d1fgka_ 93 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLA 162 (299)
T ss_dssp SCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred eEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhh---hCCEEeeeec
Confidence 899999999999 88887532 1246899999999999999999999 8899999997
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.69 E-value=1.5e-17 Score=159.76 Aligned_cols=111 Identities=24% Similarity=0.271 Sum_probs=94.3
Q ss_pred hccccceecccCCceEEEEEeCCCCEEEEEEecCCchh---hHHHHHHhhc--cccccC--------CCCCCcceeeccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE---ELAFLETSST--DFRHYN--------SHTDNDDSSDEHL 550 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~---~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~ 550 (599)
+|...+.||+|+||.||+|..++|+.||||++...... ...|.+|+.+ +++||| ...+..++|+||+
T Consensus 3 ~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~ 82 (286)
T d1ob3a_ 3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHL 82 (286)
T ss_dssp SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred CceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEee
Confidence 46666789999999999999888999999999665332 4679999998 999999 5778889999999
Q ss_pred ccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 551 ANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 551 ~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.+| ...+..+ ...+++.+...|+.||++||+||| ..+|+|||||
T Consensus 83 ~~~~~~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH---~~~IvHrDiK 127 (286)
T d1ob3a_ 83 DQDLKKLLDVC--EGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLK 127 (286)
T ss_dssp SEEHHHHHHTS--TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred hhhhHHHHHhh--cCCcchhhhHHHHHHHHHHHHHhc---cCcEEecCCC
Confidence 999 5555432 245999999999999999999999 7899999997
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.3e-17 Score=161.34 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=86.6
Q ss_pred ceecccCCceEEEEEe-CCCCEEEEEEecCCchh------hHHHHHHhhc--cccccC--------CCCCCcceeecccc
Q 007553 489 YCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE------ELAFLETSST--DFRHYN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 489 ~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~------~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~~~ 551 (599)
+.||+|+||+||+|.. .+|+.||||+++..... ...+.+|+.+ +++||| ...+..++||||++
T Consensus 4 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~~ 83 (299)
T d1ua2a_ 4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFME 83 (299)
T ss_dssp EEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCS
T ss_pred eEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhhc
Confidence 5699999999999995 56999999998654321 2468899998 999999 57788999999999
Q ss_pred cc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+| ..++... +..+++.++..++.||+.||+||| ..+|+|||||
T Consensus 84 ~~~~~~~~~~--~~~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDiK 127 (299)
T d1ua2a_ 84 TDLEVIIKDN--SLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLK 127 (299)
T ss_dssp EEHHHHHTTC--CSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred chHHhhhhhc--ccCCCHHHHHHHHHHHHHHHHHhh---ccceecccCC
Confidence 99 5555432 345899999999999999999999 8899999997
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=7.8e-18 Score=163.72 Aligned_cols=111 Identities=20% Similarity=0.278 Sum_probs=91.3
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc---cccccC--------CCCCCccee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST---DFRHYN--------SHTDNDDSS 546 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~---~l~H~n--------~~~~~~~lv 546 (599)
++|...+.||+|+||+||+|+. .+|+.||||+++.... ....+..|+.+ .++||| .+++..++|
T Consensus 2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv 81 (320)
T d1xjda_ 2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV 81 (320)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence 4577778899999999999996 4699999999965321 13446666654 689999 467789999
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||++| .+++... ..++..+...++.|||.||+||| +.+|+|||||
T Consensus 82 mEy~~~g~L~~~i~~~---~~~~e~~~~~~~~qi~~al~ylH---~~~iiHrDik 130 (320)
T d1xjda_ 82 MEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLK 130 (320)
T ss_dssp EECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred EeecCCCcHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCc
Confidence 9999999 8888743 24788999999999999999999 7899999996
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1e-17 Score=163.75 Aligned_cols=111 Identities=20% Similarity=0.172 Sum_probs=94.7
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||+|+. .+|+.||||+++.... ....+.+|+.+ +++||| .+.+.+++||
T Consensus 5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ 84 (337)
T d1o6la_ 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccce
Confidence 5688888999999999999995 5799999999975421 24568889988 999999 5677899999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||++| .+++... ..++..+...++.||+.||+||| ..+|+|||||
T Consensus 85 ey~~gg~L~~~~~~~---~~~~e~~~~~~~~qil~al~ylH---~~~iiHRDlK 132 (337)
T d1o6la_ 85 EYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIK 132 (337)
T ss_dssp ECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred eccCCCchhhhhhcc---cCCcHHHHHHHHHHHhhhhhhhh---hcCccccccC
Confidence 999999 7777742 24788889999999999999999 8899999997
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2e-17 Score=163.52 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=87.0
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC--------------CCCCCccee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN--------------SHTDNDDSS 546 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n--------------~~~~~~~lv 546 (599)
+|...++||+|+||+||+|+. .+|+.||||++...... +.+|+.+ +++||| .....+++|
T Consensus 21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~---~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv 97 (350)
T d1q5ka_ 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF---KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV 97 (350)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS---CCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEE
T ss_pred CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchH---HHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEE
Confidence 466677899999999999996 46999999999764322 2367777 999999 012236899
Q ss_pred ecccccc-cccccC-CCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN-EHFLSA-PENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G-~~~l~~-~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||||++| .+.+.. ......++|.++..|+.||++||+||| +.+|+|||||
T Consensus 98 ~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH---~~~IiHrDiK 149 (350)
T d1q5ka_ 98 LDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIK 149 (350)
T ss_dssp EECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCC
T ss_pred EeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHH---hcCCcccCCC
Confidence 9999999 555532 223446999999999999999999999 7899999997
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.65 E-value=3e-17 Score=162.39 Aligned_cols=111 Identities=22% Similarity=0.227 Sum_probs=90.1
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh----hHHHHHH---hhc--cccccC--------CCCCCcc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE----ELAFLET---SST--DFRHYN--------SHTDNDD 544 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~----~~~f~~e---~~~--~l~H~n--------~~~~~~~ 544 (599)
++|...+.||+|+||.||+|+. .+|+.||||++...... ...+.+| +.+ .++||| ...+..+
T Consensus 4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ 83 (364)
T d1omwa3 4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 83 (364)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence 4677788999999999999996 46999999998643211 2334444 444 778999 4667789
Q ss_pred eeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 545 SSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 545 lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+|||||++| .+++..+ ..+++.+...++.||+.||+||| ..+|+|||||
T Consensus 84 ivmE~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~aL~ylH---~~~iiHrDlK 134 (364)
T d1omwa3 84 FILDLMNGGDLHYHLSQH---GVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLK 134 (364)
T ss_dssp EEECCCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred EEEEecCCCcHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHH---HCCccceeec
Confidence 999999999 8888743 34788999999999999999999 8999999997
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=4.9e-17 Score=159.98 Aligned_cols=111 Identities=21% Similarity=0.152 Sum_probs=93.5
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch----hhHHHHHHhhc--cccccC--------CCCCCcceee
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET----EELAFLETSST--DFRHYN--------SHTDNDDSSD 547 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~----~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~ 547 (599)
++|...+.||+|+||.||+|.. .+|+.||||++..... ....+.+|+.+ .++||| ...+..++||
T Consensus 41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~ 120 (350)
T d1rdqe_ 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence 3577778899999999999986 4799999999864321 13568899998 999999 4667789999
Q ss_pred cccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 548 EHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 548 e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
||+++| .+++... ..+++.+...++.||++||+||| +.+|+|||||
T Consensus 121 e~~~~g~l~~~l~~~---~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHRDIK 168 (350)
T d1rdqe_ 121 EYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLK 168 (350)
T ss_dssp ECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred ccccccchhhhHhhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCcCC
Confidence 999999 6777642 24899999999999999999999 7899999997
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=5.9e-17 Score=158.47 Aligned_cols=109 Identities=12% Similarity=0.014 Sum_probs=88.4
Q ss_pred hhccc-cceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc---cccccC------------CCCCCcce
Q 007553 483 EDFHI-KYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST---DFRHYN------------SHTDNDDS 545 (599)
Q Consensus 483 ~~~~~-~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~---~l~H~n------------~~~~~~~l 545 (599)
++|.. ...||+|+||.||+|.. .+|+.||||+++.. ..+.+|+++ ..+||| .....+++
T Consensus 11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~i 86 (335)
T d2ozaa1 11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI 86 (335)
T ss_dssp GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEE
Confidence 35543 34699999999999985 57999999999653 345567766 458999 12355799
Q ss_pred eecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 546 SDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 546 v~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|||||++| .+++..+ +...+++.+...|+.||++||+||| ..+|+|||||
T Consensus 87 vmEy~~gg~L~~~i~~~-~~~~l~e~~~~~i~~qi~~al~ylH---~~~iiHRDiK 138 (335)
T d2ozaa1 87 VMECLDGGELFSRIQDR-GDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVK 138 (335)
T ss_dssp EEECCCSEEHHHHHHSC-SCCCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred EEECCCCCcHHHHHHhc-CCCCcCHHHHHHHHHHHHHHHHHHH---HcCCcccccc
Confidence 99999999 8899753 2346999999999999999999999 8899999996
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.62 E-value=3.3e-16 Score=153.51 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=88.5
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--ccc-ccC----------CCCCCcceeec
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFR-HYN----------SHTDNDDSSDE 548 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~-H~n----------~~~~~~~lv~e 548 (599)
++|.....||+|+||+||+|+- .+|+.||||+++... ...+.+|+.+ .++ ||| ......++|||
T Consensus 35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e 112 (328)
T d3bqca1 35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFE 112 (328)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC--HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEE
T ss_pred cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH--HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEe
Confidence 4677788899999999999995 579999999997543 3567889987 775 999 23456899999
Q ss_pred ccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 549 HLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 549 ~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
|+++| .++.+ .++..+...++.||+.||+||| +.+|+|||||
T Consensus 113 ~~~~~~L~~~~~------~l~e~~i~~i~~qil~aL~~LH---~~gIvHrDiK 156 (328)
T d3bqca1 113 HVNNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCH---SMGIMHRDVK 156 (328)
T ss_dssp CCCSCBGGGTTT------SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred ecCCCcHHHHhc------CCCHHHHHHHHHHHHHHHHHHh---hccccccccc
Confidence 99999 44332 3899999999999999999999 8899999997
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.4e-16 Score=151.94 Aligned_cols=110 Identities=22% Similarity=0.226 Sum_probs=91.9
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------CCCCCcceeecc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------SHTDNDDSSDEH 549 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~~~~~~~lv~e~ 549 (599)
.|...+.||+|+||+||+|+. .+|+.||||+++.... ....+.+|+.+ .++||| ...+..++|+||
T Consensus 3 ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~ 82 (292)
T d1unla_ 3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF 82 (292)
T ss_dssp SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeee
Confidence 466667899999999999995 5789999999865432 24678899998 999999 567778999999
Q ss_pred cccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 550 LANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 550 ~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+.+| ..+++. ...+++..+..++.|++.||+||| ..+|+|||||
T Consensus 83 ~~~~~l~~~~~~---~~~~~~~~~~~~~~q~~~aL~~lH---~~~IvHrDiK 128 (292)
T d1unla_ 83 CDQDLKKYFDSC---NGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLK 128 (292)
T ss_dssp CSEEHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred cccccccccccc---ccccchhHHHHHHHHHHHHHHHhh---cCCEeeeccc
Confidence 9999 544443 234789999999999999999999 7899999997
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.6e-16 Score=153.54 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=87.2
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC----------------CCC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN----------------SHT 540 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n----------------~~~ 540 (599)
++|...+.||+|+||+||+|+. .+|+.||||++..... ....+.+|+.+ +++||| ...
T Consensus 10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~ 89 (318)
T d3blha1 10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 89 (318)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC---------
T ss_pred CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccC
Confidence 5677778899999999999995 5799999999865422 24678899998 999999 113
Q ss_pred CCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...++||||+++| ....... ...+...+...++.||+.||.||| +.+|+|||||
T Consensus 90 ~~~~iv~e~~~~~~~~~~~~~--~~~~~~~~~~~i~~qil~~l~~lH---~~~ivHrDlK 144 (318)
T d3blha1 90 GSIYLVFDFCEHDLAGLLSNV--LVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMK 144 (318)
T ss_dssp -CEEEEEECCCEEHHHHHTCT--TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred ceEEEEEeccCCCccchhhhc--ccccccHHHHHHHHHHHHHHHHhc---cCCEEecCcC
Confidence 4578999999999 4433322 234788889999999999999999 8899999997
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.8e-16 Score=154.52 Aligned_cols=110 Identities=23% Similarity=0.210 Sum_probs=90.3
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC-------------CCCCCc
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN-------------SHTDND 543 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n-------------~~~~~~ 543 (599)
+.|.....||+|+||+||+|+- .+|+.||||++..... ....+.+|+.+ .++||| ......
T Consensus 18 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~ 97 (348)
T d2gfsa1 18 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND 97 (348)
T ss_dssp TTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCC
T ss_pred CCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCce
Confidence 3466677899999999999984 5799999999975432 24568899998 999999 123445
Q ss_pred ceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++|+||+.+| .++++.+ .+++.+...++.||+.||+||| +.+|+|||||
T Consensus 98 ~~i~~~~~gg~L~~~~~~~----~l~e~~~~~i~~qil~aL~~LH---~~giiHrDiK 148 (348)
T d2gfsa1 98 VYLVTHLMGADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIH---SADIIHRDLK 148 (348)
T ss_dssp CEEEEECCSEEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred EEEEEeecCCchhhhcccc----cccHHHHHHHHHHHHHHHHHHH---hCCCcccccC
Confidence 7788888888 8888643 4999999999999999999999 7899999997
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=2.1e-16 Score=152.84 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=88.9
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC---------CCCCCcceeeccccc
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN---------SHTDNDDSSDEHLAN 552 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n---------~~~~~~~lv~e~~~~ 552 (599)
|...+.||+|+||+||+|.. .+|+.||||.+..... ..++..|+++ .++|++ ...+..++||||+.+
T Consensus 9 Y~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~~ 87 (299)
T d1ckia_ 9 YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGP 87 (299)
T ss_dssp EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT-SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCCC
T ss_pred EEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc-CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcCC
Confidence 66677899999999999985 5689999999876433 2356778887 888887 456778899999988
Q ss_pred c-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 553 N-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 553 G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+ .+++... ...+++.+...+|.||++||+||| +.+|+|||||
T Consensus 88 ~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiHrDiK 130 (299)
T d1ckia_ 88 SLEDLFNFC--SRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVK 130 (299)
T ss_dssp BHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred chhhhhhhc--cCCCcHHHHHHHHHHHHHHHHHHH---HCCeeeccCC
Confidence 8 5555432 235899999999999999999999 7899999997
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.9e-16 Score=153.86 Aligned_cols=109 Identities=23% Similarity=0.188 Sum_probs=84.5
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh--hHHHHHHhhc--cccccC-------C-C----CCCccee
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE--ELAFLETSST--DFRHYN-------S-H----TDNDDSS 546 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~--~~~f~~e~~~--~l~H~n-------~-~----~~~~~lv 546 (599)
.|.....||+|+||+||+|.- .+|+.||||++...... ...+.+|+.+ .++||| . . ....+++
T Consensus 9 rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l 88 (345)
T d1pmea_ 9 RYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYL 88 (345)
T ss_dssp TEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEE
T ss_pred CeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEE
Confidence 366667899999999999984 57999999999754322 4578899998 999999 1 1 1123455
Q ss_pred ecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 547 DEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 547 ~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+||+.+| .+++..+ .+++.....++.||+.||+||| ..+|+|||||
T Consensus 89 ~~~~~~g~L~~~l~~~----~l~~~~i~~i~~qil~al~yLH---~~~iiHRDIK 136 (345)
T d1pmea_ 89 VTHLMGADLYKLLKTQ----HLSNDHICYFLYQILRGLKYIH---SANVLHRDLK 136 (345)
T ss_dssp EEECCCEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EEeecCCchhhhhhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCC
Confidence 6677777 8888743 3899999999999999999999 7899999997
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.6e-16 Score=153.99 Aligned_cols=109 Identities=21% Similarity=0.106 Sum_probs=87.9
Q ss_pred hhccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------C------CCCC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------S------HTDN 542 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~------~~~~ 542 (599)
+.|...+.||+|+||+||+|.. .+|+.||||++..... ....+.+|+.+ .++||| . ....
T Consensus 17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~ 96 (355)
T d2b1pa1 17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD 96 (355)
T ss_dssp TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence 3466677899999999999995 4699999999975422 24568899998 999999 1 3356
Q ss_pred cceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
+++||||+.+| .+.+.. .+++.+...++.||+.||+||| ..+|+|||||
T Consensus 97 ~~iv~Ey~~~~l~~~~~~-----~~~~~~i~~~~~qil~gl~~LH---~~giiHrDlK 146 (355)
T d2b1pa1 97 VYLVMELMDANLCQVIQM-----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLK 146 (355)
T ss_dssp EEEEEECCSEEHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred eEEEEeccchHHHHhhhc-----CCCHHHHHHHHHHHHHHHHHhh---hcccccccCC
Confidence 79999999988 555542 3789999999999999999999 8899999997
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.4e-16 Score=152.60 Aligned_cols=224 Identities=19% Similarity=0.161 Sum_probs=111.0
Q ss_pred cEEeeCCCCCCeecCCcccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCccccc-CCccCCCCCCCcEEEee
Q 007553 22 VTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGS-IPLEFGNLKDLYDLRLQ 100 (599)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~ 100 (599)
+++|+++ +.+.......+.. ..+..+.+....+...... .....+|++||+++|.++.. ++..+..+++|++|+|+
T Consensus 3 ~~lDLs~-~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~ 79 (284)
T d2astb2 3 QTLDLTG-KNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79 (284)
T ss_dssp SEEECTT-CBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred CEEECCC-CCCCchHHHHHHh-ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence 3677776 5553222222211 2345666666555432222 23456778888887776543 23345677777777777
Q ss_pred cCcCCccCCccccCCCcCCEEeeecc-ccccc-CCccccCCCcccEEecccCc-cCCC-Cccccc-CCCCCCeeeccccc
Q 007553 101 GNKLDGLIPSSIGNLTNLTHLDLSLN-QLSGR-LPQEVGNLKNLVSLFLDNNN-LTGP-IPSTLY-HLNQLSTLYLAYNN 175 (599)
Q Consensus 101 ~n~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~l~~n~-i~~~-~~~~l~-~l~~L~~L~l~~n~ 175 (599)
+|.+.+..+..++.+++|++|++++| .+++. +.....++++|++|++++|. ++.. +...+. ..+.|+.|+++++.
T Consensus 80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (284)
T d2astb2 80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159 (284)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence 77776655566777777777777774 34322 11223455666666666642 2211 111111 12455555555431
Q ss_pred ccccCccccCCCCCCCEEEccCCcccc-cCchhccCCCCCCEEeCCCCc-CcccCcccCCCCCCCCEEEccCC-cCCCCC
Q 007553 176 LVGPLPKEVGNLKNLDSLLLNRNNLTG-PIPSTIGFLNLLDELRLSHNR-LDGPIPPTIGNLTYLTSLDLSSN-QLSGLL 252 (599)
Q Consensus 176 ~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 252 (599)
. .++. .+...+..+++|+.|++++|. +++.....+..+++|++|++++| .+++..
T Consensus 160 ~----------------------~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~ 217 (284)
T d2astb2 160 K----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 217 (284)
T ss_dssp G----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred c----------------------ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence 1 1111 111122334445555554432 33333344445555555555553 344333
Q ss_pred CcccCCCCCCCEEeccCc
Q 007553 253 PREVGNLKYLDSLSLDRN 270 (599)
Q Consensus 253 ~~~l~~l~~L~~L~L~~n 270 (599)
...++.+++|+.|++.+|
T Consensus 218 l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 218 LLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeeeCC
Confidence 344555555666665554
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.1e-16 Score=152.37 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=88.3
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchh-------hHHHHHHhhc--ccc--ccC--------CCCCCc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETE-------ELAFLETSST--DFR--HYN--------SHTDND 543 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~-------~~~f~~e~~~--~l~--H~n--------~~~~~~ 543 (599)
+|...+.||+|+||+||+|+. .+|+.||||++...... ...+.+|+.+ +++ ||| .+.+..
T Consensus 5 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~ 84 (273)
T d1xwsa_ 5 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSF 84 (273)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEE
T ss_pred eEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeE
Confidence 466678899999999999995 57999999998643211 1336678877 665 899 466788
Q ss_pred ceeecccccc---cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN---EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G---~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+.+| .+++..+ ..+++.+...++.||++||+||| ..+|+|||||
T Consensus 85 ~lv~e~~~~~~~l~~~~~~~---~~l~e~~~~~~~~qi~~al~~lH---~~~iiHrDiK 137 (273)
T d1xwsa_ 85 VLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCH---NCGVLHRDIK 137 (273)
T ss_dssp EEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred EEEEEeccCcchHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCccccCc
Confidence 9999999875 5666532 35899999999999999999999 8899999997
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.7e-16 Score=152.94 Aligned_cols=109 Identities=19% Similarity=0.166 Sum_probs=82.0
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHhhc--cccccC--------C------CCCCc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSET---EELAFLETSST--DFRHYN--------S------HTDND 543 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~---~~~~f~~e~~~--~l~H~n--------~------~~~~~ 543 (599)
.|...+.||+|+||+||+|.- .+|+.||||+++.... ....+.+|+.+ .++||| . .....
T Consensus 19 ~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~ 98 (346)
T d1cm8a_ 19 VYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDF 98 (346)
T ss_dssp SEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCC
T ss_pred cEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceE
Confidence 466667899999999999995 5699999999975322 24578899998 999999 1 22356
Q ss_pred ceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 544 DSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 544 ~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++||||+... ..+.+. ..+++.....++.||+.||+||| +.+|+|||||
T Consensus 99 ~lv~e~~~~~l~~~~~~----~~l~~~~~~~~~~qi~~aL~~LH---~~~IiHrDiK 148 (346)
T d1cm8a_ 99 YLVMPFMGTDLGKLMKH----EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLK 148 (346)
T ss_dssp EEEEECCSEEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred EEEEecccccHHHHHHh----ccccHHHHHHHHHHHHHHHHHHH---hCCCcccccC
Confidence 8999999544 555543 24999999999999999999999 7899999997
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.6e-16 Score=152.17 Aligned_cols=212 Identities=24% Similarity=0.255 Sum_probs=128.9
Q ss_pred CCcCCEEeeeccccccc-CCccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccc-cccc-CccccCCCCCCC
Q 007553 115 LTNLTHLDLSLNQLSGR-LPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNN-LVGP-LPKEVGNLKNLD 191 (599)
Q Consensus 115 l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~ 191 (599)
..+|++|++++|.+... +...+..+++|++|++++|.+++..+..+..+++|++|++++|. ++.. +......+++|+
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~ 124 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence 34555555555554422 22334555666666666665554444555566666666666643 3211 111224567777
Q ss_pred EEEccCCc-cccc-Cchhc-cCCCCCCEEeCCCCc--Cccc-CcccCCCCCCCCEEEccCC-cCCCCCCcccCCCCCCCE
Q 007553 192 SLLLNRNN-LTGP-IPSTI-GFLNLLDELRLSHNR--LDGP-IPPTIGNLTYLTSLDLSSN-QLSGLLPREVGNLKYLDS 264 (599)
Q Consensus 192 ~L~l~~n~-~~~~-~~~~~-~~l~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~ 264 (599)
+|+++++. ++.. ....+ ...+.|+.|+++++. ++.. +...+..+++|++|++++| .+++.....+..+++|++
T Consensus 125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~ 204 (284)
T d2astb2 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 204 (284)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence 77777753 3221 11222 234789999998763 3322 2233466899999999986 577667778889999999
Q ss_pred EeccCc-ceeecCCcCccCCCCCCEEECCCCCCccC-CCccCcCCCCCCEEEcccCcCccCCCccccC
Q 007553 265 LSLDRN-NLIGPIPPTIGYLTNLTSLNLGYNQLNSS-IPPELMNCSQLQNLAVNHNSLSGSIPSEIGN 330 (599)
Q Consensus 265 L~L~~n-~l~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 330 (599)
|+|++| .+++.....+..+++|+.|+++++ ++.. ++.....+++| .+..+.++...+..+++
T Consensus 205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~ 268 (284)
T d2astb2 205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINCSHFTTIARPTIGN 268 (284)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSS
T ss_pred EECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccCccCCCCCCCccCc
Confidence 999996 576665666888999999999987 3322 11112345554 45677777665555544
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.6e-15 Score=131.37 Aligned_cols=111 Identities=23% Similarity=0.200 Sum_probs=65.4
Q ss_pred cCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCC
Q 007553 40 TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLT 119 (599)
Q Consensus 40 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 119 (599)
+.++.++|.|+|++|.|+ .++..+..+++|++|+|++|.++.. + .|..+++|++|++++|+++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCccccccccccc
Confidence 445556666777777666 3455455566666777776666633 2 356666666666666666654444445566666
Q ss_pred EEeeecccccccCC-ccccCCCcccEEecccCccC
Q 007553 120 HLDLSLNQLSGRLP-QEVGNLKNLVSLFLDNNNLT 153 (599)
Q Consensus 120 ~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~i~ 153 (599)
+|++++|.+..... ..+.++++|++|++++|.++
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred cceeccccccccccccccccccccchhhcCCCccc
Confidence 66666666653211 23555566666666665554
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.1e-15 Score=148.26 Aligned_cols=113 Identities=23% Similarity=0.318 Sum_probs=86.5
Q ss_pred hhccccceecccCCceEEEEEe-CC-CCEEEEEEecCCchh---hHHHHHHhhc-----cccccC-------------CC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL-SS-GRVVALKKLHRSETE---ELAFLETSST-----DFRHYN-------------SH 539 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~-~~-g~~vavK~l~~~~~~---~~~f~~e~~~-----~l~H~n-------------~~ 539 (599)
++|...+.||+|+||+||+|.. .+ ++.||||++...... ...+.+|+.+ .++||| ..
T Consensus 7 ~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~ 86 (305)
T d1blxa_ 7 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR 86 (305)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred CCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccccc
Confidence 5677778899999999999985 34 678999998653221 3356677765 458999 12
Q ss_pred CCCcceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 540 TDNDDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 540 ~~~~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
....++||||+++| ..+.... ....+++.....++.||+.||+||| ..+|+|||||
T Consensus 87 ~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~yLH---~~~ivHrDiK 143 (305)
T d1blxa_ 87 ETKLTLVFEHVDQDLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLK 143 (305)
T ss_dssp EEEEEEEEECCSCBHHHHHHHS-CTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred CceEEEEEEeccCCchhhhhhc-cCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecCCC
Confidence 34578999999999 4444322 2345899999999999999999999 7899999997
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=7.3e-15 Score=120.79 Aligned_cols=102 Identities=30% Similarity=0.356 Sum_probs=66.6
Q ss_pred CEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecc
Q 007553 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126 (599)
Q Consensus 47 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 126 (599)
|+|+|++|.++ .++ .+..+++|++|++++|.++ .+|..|+.+++|++|++++|++++. | .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 56777777776 334 3666777777777777776 4555667777777777777777643 3 4667777777777777
Q ss_pred cccccC-CccccCCCcccEEecccCccC
Q 007553 127 QLSGRL-PQEVGNLKNLVSLFLDNNNLT 153 (599)
Q Consensus 127 ~i~~~~-~~~l~~l~~L~~L~l~~n~i~ 153 (599)
.+.... ...+..+++|++|++++|+++
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 766432 244666666666666666665
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.6e-15 Score=129.97 Aligned_cols=128 Identities=19% Similarity=0.105 Sum_probs=82.0
Q ss_pred CCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCccc
Q 007553 64 IGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLV 143 (599)
Q Consensus 64 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 143 (599)
|.++.+|++|+|++|+|+. ++..+..+++|+.|+|++|++... ..|..+++|++|++++|.++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 5566677778888877773 455556677777777777777744 3467777777777777777755555556677777
Q ss_pred EEecccCccCCCCc-ccccCCCCCCeeecccccccccC---ccccCCCCCCCEEE
Q 007553 144 SLFLDNNNLTGPIP-STLYHLNQLSTLYLAYNNLVGPL---PKEVGNLKNLDSLL 194 (599)
Q Consensus 144 ~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~ 194 (599)
+|++++|+++.... ..+..+++|++|++++|.+.... +..+..+++|++||
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 77777777664311 34556666666666666665321 11344555565554
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.53 E-value=2.5e-15 Score=144.30 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=86.0
Q ss_pred hccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccc-cC--------CCCCCcceeecccc
Q 007553 484 DFHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRH-YN--------SHTDNDDSSDEHLA 551 (599)
Q Consensus 484 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H-~n--------~~~~~~~lv~e~~~ 551 (599)
.|...+.||+|+||+||+|+. .+|+.||||.+..... ...+.+|++. .++| +| ..+...++||||+.
T Consensus 6 ~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~~ 84 (293)
T d1csna_ 6 HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLG 84 (293)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECCC
T ss_pred ceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC-cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEecC
Confidence 466677899999999999995 4689999998865432 2334555555 5555 44 45677899999996
Q ss_pred cc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 552 NN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 552 ~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
++ .++++... ..+++.+...++.|++.||+||| ..+|+|||||
T Consensus 85 ~~l~~~~~~~~--~~~~~~~~~~i~~q~~~~l~~lH---~~giiHrDiK 128 (293)
T d1csna_ 85 PSLEDLLDLCG--RKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIK 128 (293)
T ss_dssp CBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCC
T ss_pred CCHHHHHHhhc--cchhhHHHHHHHHHHHHHHHHHH---HCCceeccCC
Confidence 55 77776432 34899999999999999999999 8999999997
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.8e-15 Score=147.09 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=90.3
Q ss_pred hhccccceecccCCceEEEEEe----CCCCEEEEEEecCCch-----hhHHHHHHhhc--cccc-cC--------CCCCC
Q 007553 483 EDFHIKYCIGTGGYGSVYRAQL----SSGRVVALKKLHRSET-----EELAFLETSST--DFRH-YN--------SHTDN 542 (599)
Q Consensus 483 ~~~~~~~~lg~g~~g~v~~~~~----~~g~~vavK~l~~~~~-----~~~~f~~e~~~--~l~H-~n--------~~~~~ 542 (599)
++|...+.||+|+||+||+|.. .+|+.||||.++.... ....+.+|+++ +++| || .....
T Consensus 24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~ 103 (322)
T d1vzoa_ 24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 103 (322)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence 5688888999999999999974 2589999999864321 13567788988 8988 67 46778
Q ss_pred cceeecccccc--cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN--EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G--~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++|||||.+| .++++..+ .+.......++.||+.||+||| ..+|+|||||
T Consensus 104 ~~~v~e~~~~~~L~~~i~~~~---~~~e~~~~~~~~Qi~~al~~lH---~~~ivHrDiK 156 (322)
T d1vzoa_ 104 LHLILDYINGGELFTHLSQRE---RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIK 156 (322)
T ss_dssp EEEEECCCCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred eeeeeecccccHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHhh---cCCEEeccCC
Confidence 89999999999 77777432 3567788899999999999999 7899999996
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=3.6e-14 Score=116.56 Aligned_cols=103 Identities=29% Similarity=0.289 Sum_probs=76.7
Q ss_pred CEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCCcccEEecccC
Q 007553 71 LELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150 (599)
Q Consensus 71 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 150 (599)
|+|+|++|+++. ++ .+..+++|++|++++|+++ .+|..+..+++|++|++++|.++.. | .+.++++|++|++++|
T Consensus 1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 578888888873 34 4778888888888888887 4566788888888888888888743 3 4778888888888888
Q ss_pred ccCCCCc-ccccCCCCCCeeecccccccc
Q 007553 151 NLTGPIP-STLYHLNQLSTLYLAYNNLVG 178 (599)
Q Consensus 151 ~i~~~~~-~~l~~l~~L~~L~l~~n~~~~ 178 (599)
+++.... ..+..+++|+.|++++|++..
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 8775422 456677777777777777653
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.50 E-value=7.3e-16 Score=152.29 Aligned_cols=243 Identities=19% Similarity=0.167 Sum_probs=122.1
Q ss_pred CCcccCCCCCCCEEEcccCcCccc----CCcCCCCCCCCCEEeccCCccccc----------CCccCCCCCCCcEEEeec
Q 007553 36 IPSETGALSRLKVLDLSYNRLTGT----IPSEIGSLRDLLELNLSYNILNGS----------IPLEFGNLKDLYDLRLQG 101 (599)
Q Consensus 36 ~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~----------~p~~~~~l~~L~~L~L~~ 101 (599)
+...+.++..|+.|+|++|.+... +...+...++|+.|+++++..... +...+..+++|++|+|++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 344455567777777777766422 233455667777777776643211 112234456677777777
Q ss_pred CcCCcc----CCccccCCCcCCEEeeecccccccCCccc-------------cCCCcccEEecccCccCCCCcccccCCC
Q 007553 102 NKLDGL----IPSSIGNLTNLTHLDLSLNQLSGRLPQEV-------------GNLKNLVSLFLDNNNLTGPIPSTLYHLN 164 (599)
Q Consensus 102 n~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-------------~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 164 (599)
|.+... +...+..+++|++|++++|.+.......+ ...+.|+.+.+++|.+......
T Consensus 103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~------ 176 (344)
T d2ca6a1 103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK------ 176 (344)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH------
T ss_pred cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccc------
Confidence 666543 22233345666666666665532111111 1233444444444443321110
Q ss_pred CCCeeecccccccccCccccCCCCCCCEEEccCCccccc-----CchhccCCCCCCEEeCCCCcCccc----CcccCCCC
Q 007553 165 QLSTLYLAYNNLVGPLPKEVGNLKNLDSLLLNRNNLTGP-----IPSTIGFLNLLDELRLSHNRLDGP----IPPTIGNL 235 (599)
Q Consensus 165 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l 235 (599)
.+...+...++|+.|+++.|.+... +...+...+.|+.|++++|.+... +...+..+
T Consensus 177 --------------~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~ 242 (344)
T d2ca6a1 177 --------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242 (344)
T ss_dssp --------------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred --------------cccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccc
Confidence 1112233344555555555554321 122344455566666666555422 22344556
Q ss_pred CCCCEEEccCCcCCCCCCc----ccC--CCCCCCEEeccCcceeec----CCcCc-cCCCCCCEEECCCCCCcc
Q 007553 236 TYLTSLDLSSNQLSGLLPR----EVG--NLKYLDSLSLDRNNLIGP----IPPTI-GYLTNLTSLNLGYNQLNS 298 (599)
Q Consensus 236 ~~L~~L~l~~n~l~~~~~~----~l~--~l~~L~~L~L~~n~l~~~----~~~~~-~~~~~L~~L~ls~n~~~~ 298 (599)
++|++|++++|.+++.... .+. ..+.|++|++++|.++.. +...+ ...+.|++|++++|.+..
T Consensus 243 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 6666666666666532111 122 234577777777776542 12222 245678888888887753
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.48 E-value=3e-15 Score=147.79 Aligned_cols=242 Identities=18% Similarity=0.192 Sum_probs=125.5
Q ss_pred CccccCCCcCCEEeeeccccccc----CCccccCCCcccEEecccCccCCC----------CcccccCCCCCCeeecccc
Q 007553 109 PSSIGNLTNLTHLDLSLNQLSGR----LPQEVGNLKNLVSLFLDNNNLTGP----------IPSTLYHLNQLSTLYLAYN 174 (599)
Q Consensus 109 ~~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~i~~~----------~~~~l~~l~~L~~L~l~~n 174 (599)
...+....+|+.|++++|.+... +...+...++|+.|+++++..... +...+..+++|++|+|++|
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 34556667777777777776532 223455667777777766543321 1112333444555555555
Q ss_pred cccccCccccCCCCCCCEEEccCCcccccCchhccCCCCCCEEeCCCCcCcccCc-------------ccCCCCCCCCEE
Q 007553 175 NLVGPLPKEVGNLKNLDSLLLNRNNLTGPIPSTIGFLNLLDELRLSHNRLDGPIP-------------PTIGNLTYLTSL 241 (599)
Q Consensus 175 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L 241 (599)
.+....... +...+...+.|+.|++++|.+..... ......+.|+.+
T Consensus 104 ~i~~~~~~~--------------------l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l 163 (344)
T d2ca6a1 104 AFGPTAQEP--------------------LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 163 (344)
T ss_dssp CCCTTTHHH--------------------HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred ccccccccc--------------------hhhhhcccccchheecccccccccccccccccccccccccccccCccccee
Confidence 443321111 11222333444444444444321100 001234556666
Q ss_pred EccCCcCCCC----CCcccCCCCCCCEEeccCcceeec-----CCcCccCCCCCCEEECCCCCCccC----CCccCcCCC
Q 007553 242 DLSSNQLSGL----LPREVGNLKYLDSLSLDRNNLIGP-----IPPTIGYLTNLTSLNLGYNQLNSS----IPPELMNCS 308 (599)
Q Consensus 242 ~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~~L~~L~ls~n~~~~~----~~~~~~~l~ 308 (599)
.+++|.+... +...+...+.|+.|+|++|.+... +...+..++.|+.|++++|.++.. +...+..++
T Consensus 164 ~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~ 243 (344)
T d2ca6a1 164 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243 (344)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccc
Confidence 6666655422 112234456666666666665432 223455567777777777766432 223455667
Q ss_pred CCCEEEcccCcCccCCC----cccc--CCCCCCEEeCCCcccccc----CCccc-CCCCCCCEEECCCCcCcc
Q 007553 309 QLQNLAVNHNSLSGSIP----SEIG--NLIHLRQLDLSHNFINGT----IPSQL-GKIPNVSEVDVSKNNLSG 370 (599)
Q Consensus 309 ~L~~L~l~~n~l~~~~~----~~~~--~l~~L~~L~l~~n~l~~~----~~~~~-~~~~~L~~L~ls~n~l~~ 370 (599)
+|+.|++++|.+++... ..+. ..+.|++|++++|+++.. +...+ .+.+.|+.|++++|.+..
T Consensus 244 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred cchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 77777777777654311 2222 235677888888877642 22222 245677888888887753
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.37 E-value=2.6e-15 Score=134.77 Aligned_cols=129 Identities=28% Similarity=0.309 Sum_probs=66.2
Q ss_pred CcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEEeeecccccccCCccccCCC
Q 007553 61 PSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK 140 (599)
Q Consensus 61 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 140 (599)
+.+++.+++|++|+|++|.++. ++ .|.++++|++|+|++|++.. +|..+..+++|++|++++|.++.. +.+.+++
T Consensus 41 ~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~ 115 (198)
T d1m9la_ 41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLV 115 (198)
T ss_dssp HHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred hhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--ccccccc
Confidence 3344555555555555555552 22 34555555555555555542 233333344555555555555532 2355555
Q ss_pred cccEEecccCccCCCCc-ccccCCCCCCeeecccccccccCcc----------ccCCCCCCCEEE
Q 007553 141 NLVSLFLDNNNLTGPIP-STLYHLNQLSTLYLAYNNLVGPLPK----------EVGNLKNLDSLL 194 (599)
Q Consensus 141 ~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~----------~l~~l~~L~~L~ 194 (599)
+|++|++++|+++.... ..+..+++|+.|++++|++....+. .+..+|+|+.||
T Consensus 116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 66666666665553211 2455566666666666655432211 144567777765
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.37 E-value=4.8e-15 Score=133.03 Aligned_cols=111 Identities=27% Similarity=0.321 Sum_probs=54.4
Q ss_pred cccCCCCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCc
Q 007553 38 SETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTN 117 (599)
Q Consensus 38 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 117 (599)
..++.+++|++|+|++|.|+. ++ .+..+++|++|+|++|.++ .+|..+..+++|++|++++|+++.. ..+..+++
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~ 116 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVN 116 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccccc
Confidence 344455555555555555542 22 2445555555555555554 2333333344555555555555432 23445555
Q ss_pred CCEEeeecccccccCC-ccccCCCcccEEecccCccC
Q 007553 118 LTHLDLSLNQLSGRLP-QEVGNLKNLVSLFLDNNNLT 153 (599)
Q Consensus 118 L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~i~ 153 (599)
|++|++++|.++.... ..+.++++|+.|++++|.+.
T Consensus 117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred ccccccccchhccccccccccCCCccceeecCCCccc
Confidence 5555555555543211 23455555555555555443
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.34 E-value=3.9e-13 Score=120.00 Aligned_cols=100 Identities=10% Similarity=-0.051 Sum_probs=72.5
Q ss_pred cceecccCCceEEEEEeCCCCEEEEEEecCCchh-------------------hHHHHHHhhc--cccccC----CCCCC
Q 007553 488 KYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE-------------------ELAFLETSST--DFRHYN----SHTDN 542 (599)
Q Consensus 488 ~~~lg~g~~g~v~~~~~~~g~~vavK~l~~~~~~-------------------~~~f~~e~~~--~l~H~n----~~~~~ 542 (599)
.+.||+|+||+||+|...+|+.||||.++..... ......|... ++.|++ .....
T Consensus 5 g~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~~ 84 (191)
T d1zara2 5 GKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWEG 84 (191)
T ss_dssp EEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEET
T ss_pred CCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEecC
Confidence 4679999999999999888999999987532110 1123344444 777777 22234
Q ss_pred cceeecccccc-cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 543 DDSSDEHLANN-EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 543 ~~lv~e~~~~G-~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
.++||||++++ ..- +++.+..+++.|+++|++||| ..+|+|||||
T Consensus 85 ~~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH---~~giiHrDiK 130 (191)
T d1zara2 85 NAVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFY---HRGIVHGDLS 130 (191)
T ss_dssp TEEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred CEEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHh---hCCEEEccCC
Confidence 57999999987 322 233445689999999999999 7899999997
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.4e-12 Score=110.18 Aligned_cols=109 Identities=20% Similarity=0.176 Sum_probs=70.7
Q ss_pred CCCCCEEEcccCcCcccCCcCCCCCCCCCEEeccCC-cccccCCccCCCCCCCcEEEeecCcCCccCCccccCCCcCCEE
Q 007553 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYN-ILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHL 121 (599)
Q Consensus 43 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 121 (599)
+.....++++++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+++.+.+..|..+++|++|
T Consensus 7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 85 (156)
T d2ifga3 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (156)
T ss_dssp CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence 334455666666665 45556666777777777655 4665555667777777777777777776666667777777777
Q ss_pred eeecccccccCCccccCCCcccEEecccCccC
Q 007553 122 DLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLT 153 (599)
Q Consensus 122 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~ 153 (599)
++++|+++...++.+.. .+|+.|+|++|.+.
T Consensus 86 ~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 86 NLSFNALESLSWKTVQG-LSLQELVLSGNPLH 116 (156)
T ss_dssp ECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred eccCCCCcccChhhhcc-ccccccccCCCccc
Confidence 77777777444444433 35777777777664
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=3.7e-13 Score=133.53 Aligned_cols=112 Identities=10% Similarity=0.017 Sum_probs=80.9
Q ss_pred ccccceecccCCceEEEEEe-CCCCEEEEEEecCCchhhHHHHHHhhc--cccccC---------------------CCC
Q 007553 485 FHIKYCIGTGGYGSVYRAQL-SSGRVVALKKLHRSETEELAFLETSST--DFRHYN---------------------SHT 540 (599)
Q Consensus 485 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavK~l~~~~~~~~~f~~e~~~--~l~H~n---------------------~~~ 540 (599)
|.....||+|+||+||+|+- .+|+.||||+++........+.+|+.+ .++|++ ...
T Consensus 15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~ 94 (362)
T d1q8ya_ 15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGP 94 (362)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEET
T ss_pred EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccc
Confidence 55567899999999999995 579999999998765445567777776 665544 112
Q ss_pred CCcceeecccccc---cccccCCCCCCCCChHHHHHHHHHHHHHHhhhhCCCCccccccccC
Q 007553 541 DNDDSSDEHLANN---EHFLSAPENYERVDFSPDFSIADQSKKGFKLLADRKYRKSYYQRLY 599 (599)
Q Consensus 541 ~~~~lv~e~~~~G---~~~l~~~~~~~~l~~~~~~~ia~~ia~gl~yLH~~~~~~i~Hrdl~ 599 (599)
...++|++++..+ ..+.. ......+++.....++.||++||+|||+ ..+|+|||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~qil~al~~lh~--~~~IvHrDlK 153 (362)
T d1q8ya_ 95 NGVHVVMVFEVLGENLLALIK-KYEHRGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDIK 153 (362)
T ss_dssp TEEEEEEEECCCCEEHHHHHH-HTTTSCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCCS
T ss_pred cceeeeeeecccccccccccc-cccccCCcHHHHHHHHHHHHHHHHHHhh--hcCcccccCC
Confidence 3334556655555 22222 2234457888999999999999999993 3799999997
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.2e-11 Score=105.82 Aligned_cols=109 Identities=20% Similarity=0.064 Sum_probs=91.1
Q ss_pred CCCCcEEeeCCCCCCeecCCcccCCCCCCCEEEcccC-cCcccCCcCCCCCCCCCEEeccCCcccccCCccCCCCCCCcE
Q 007553 18 FPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYN-RLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYD 96 (599)
Q Consensus 18 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 96 (599)
+.....++..+ +.+. ..|..+..+++|+.|++++| .++...+.+|.++++|++|+|++|+++...|.+|..+++|++
T Consensus 7 c~~~~~l~c~~-~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 84 (156)
T d2ifga3 7 PHGSSGLRCTR-DGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (156)
T ss_dssp CSSSSCEECCS-SCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred cCCCCeEEecC-CCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence 44556788887 6665 56778888999999999876 588666778999999999999999999888899999999999
Q ss_pred EEeecCcCCccCCccccCCCcCCEEeeeccccc
Q 007553 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 129 (599)
Q Consensus 97 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 129 (599)
|+|++|++....+..|. ..+|+.|++++|.+.
T Consensus 85 L~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 85 LNLSFNALESLSWKTVQ-GLSLQELVLSGNPLH 116 (156)
T ss_dssp EECCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred eeccCCCCcccChhhhc-cccccccccCCCccc
Confidence 99999999955545554 457999999999875
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.1e-09 Score=92.10 Aligned_cols=88 Identities=26% Similarity=0.261 Sum_probs=45.2
Q ss_pred CCCCCCEEeccCCcccccCCccCCCCCCCcEEEeecCcCCccC--CccccCCCcCCEEeeecccccccCCccccCCCccc
Q 007553 66 SLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLI--PSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLV 143 (599)
Q Consensus 66 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 143 (599)
.+..+..++..++... .++..+.++++|++|+|++|+++... +..+..+++|+.|++++|.|+...+-...+..+|+
T Consensus 40 ~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~ 118 (162)
T d1koha1 40 AQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118 (162)
T ss_dssp TTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCS
T ss_pred hccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccc
Confidence 3344444444444333 23333445666777777777666432 23345566666666666666643322222334556
Q ss_pred EEecccCccCC
Q 007553 144 SLFLDNNNLTG 154 (599)
Q Consensus 144 ~L~l~~n~i~~ 154 (599)
+|++++|.+..
T Consensus 119 ~L~L~~Npl~~ 129 (162)
T d1koha1 119 ELWLDGNSLSD 129 (162)
T ss_dssp SCCCTTSTTSS
T ss_pred eeecCCCCcCc
Confidence 66666665554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=8.7e-09 Score=88.19 Aligned_cols=65 Identities=29% Similarity=0.225 Sum_probs=28.2
Q ss_pred cCCCcCCEEeeecccccccC--CccccCCCcccEEecccCccCCCCcccccCCCCCCeeeccccccc
Q 007553 113 GNLTNLTHLDLSLNQLSGRL--PQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLV 177 (599)
Q Consensus 113 ~~l~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 177 (599)
..+++|++|++++|+|+... +..+..+++|+.|++++|.|+...+-.+....+|++|++++|.+.
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 34555555555555554321 223344455555555555544322211222233444444444443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.81 E-value=2.1e-06 Score=73.33 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=5.9
Q ss_pred CcCCEEeeeccccc
Q 007553 116 TNLTHLDLSLNQLS 129 (599)
Q Consensus 116 ~~L~~L~l~~n~i~ 129 (599)
+.|++|++++|.+.
T Consensus 72 ~~L~~L~L~~n~i~ 85 (167)
T d1pgva_ 72 PSLRVLNVESNFLT 85 (167)
T ss_dssp SSCCEEECCSSBCC
T ss_pred ccccceeeehhhcc
Confidence 34444444444433
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.73 E-value=2.9e-06 Score=72.36 Aligned_cols=85 Identities=12% Similarity=0.095 Sum_probs=40.8
Q ss_pred CCCCCEEEcccC-cCccc----CCcCCCCCCCCCEEeccCCcccccCC----ccCCCCCCCcEEEeecCcCCcc----CC
Q 007553 43 LSRLKVLDLSYN-RLTGT----IPSEIGSLRDLLELNLSYNILNGSIP----LEFGNLKDLYDLRLQGNKLDGL----IP 109 (599)
Q Consensus 43 ~~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~~~~~----~~ 109 (599)
.+.|+.|+|+++ .++.. +...+...++|++|+|++|.+..... ..+...+.|++|+|++|.+.+. +.
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 455566666543 23321 12234445556666666665543211 1223445666666666666532 11
Q ss_pred ccccCCCcCCEEeeeccc
Q 007553 110 SSIGNLTNLTHLDLSLNQ 127 (599)
Q Consensus 110 ~~~~~l~~L~~L~l~~n~ 127 (599)
..+...+.|++|++++|.
T Consensus 94 ~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HHTTTTCCCSEEECCCCS
T ss_pred HHHHhCCcCCEEECCCCc
Confidence 233444555555555543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.32 E-value=1.5e-05 Score=67.80 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=6.5
Q ss_pred CCCCCcEEEeecCcC
Q 007553 90 NLKDLYDLRLQGNKL 104 (599)
Q Consensus 90 ~l~~L~~L~L~~n~~ 104 (599)
..++|++|++++|.+
T Consensus 44 ~n~~L~~L~Ls~n~l 58 (166)
T d1io0a_ 44 TNTYVKKFSIVGTRS 58 (166)
T ss_dssp TCCSCCEEECTTSCC
T ss_pred cCCccCeeeccCCcc
Confidence 334444444444443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.15 E-value=1.4e-05 Score=67.98 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=55.3
Q ss_pred CCCCCCEEEccc-CcCccc----CCcCCCCCCCCCEEeccCCcccccCC----ccCCCCCCCcEEEeecCcCCcc----C
Q 007553 42 ALSRLKVLDLSY-NRLTGT----IPSEIGSLRDLLELNLSYNILNGSIP----LEFGNLKDLYDLRLQGNKLDGL----I 108 (599)
Q Consensus 42 ~~~~L~~L~l~~-n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~~~~~----~ 108 (599)
+.+.|+.|+|++ +.++.. +..++...++|++|+|++|.++.... ..+...+.|+.|++++|.+... +
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l 94 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 94 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence 345555555554 233311 12233445556666666665543211 1233455666666666665432 2
Q ss_pred CccccCCCcCCEEee--ecccccc----cCCccccCCCcccEEecccCc
Q 007553 109 PSSIGNLTNLTHLDL--SLNQLSG----RLPQEVGNLKNLVSLFLDNNN 151 (599)
Q Consensus 109 ~~~~~~l~~L~~L~l--~~n~i~~----~~~~~l~~l~~L~~L~l~~n~ 151 (599)
...+...++|+.+++ ++|.+.. .+.+.+...++|++|+++.+.
T Consensus 95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 244455566665444 3444433 233445566777777776553
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