Citrus Sinensis ID: 007555

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------60
Protein Sequence
MATALAISQPVSFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFDPQS
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEccEEEEcEEccccccccccccccccccccEEEEccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccc
Coil and Loop (DISEMBL)
matalaisqpvsfnlfnvsagkasalsqqppsriryrlssrrwlnldsISASHRFVsrcsitntevqldhvaaddevredmstnemecpVSVVQLNSEMLQINSEMLQMDSltlltegtfvdsllttipvlSEEEQnalaatpahpeGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGgplvgklmdhspripayICLNTVQAAAQLLSAAMIIHAHtviptsssmllhpWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKissgvldrakcsqsccrtsnegpvpdadnivDVGIEAIKLGWKeymqqpvlpaSLAYVLLCLNVVLTPGSLMTAFLTqrglnpsiiggFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWsgslsqqnpLLFFLCLIVLSRLGHMSYDIVGAQILqtgipsskanligtTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWllnptdeqrslfsfdpqs
Flexible Loop (DISEMBL)
matalaisqpvsfNLFNVSagkasalsqqppsriRYRLSSRRWLNLDSISASHRFVSRCSitntevqldhVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRtsnegpvpdadnivDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFDPQS
Low Complexity Region (SEG)
MATALAISQPVSFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFDPQS
Disordered region (IsUnstruct)
***********SFNLFN*****************RYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVA***************CPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNP**************
Disordered Region (DISOPRED)
*********PVSFNLFNVSAG**************************************SITNTEVQLDHVA*******************VVQLN***************************************************GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGV**************************DVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLF******
Disordered Region (DISEMBL)
MATALAISQPVSFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQR*********
Disordered Region (DISPRO)
**TALAISQPVSFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLD******************DADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATALAISQPVSFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFDPQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	598	2.2.26 [Sep-21-2011]
Q8W4E7	598	Solute carrier family 40	yes	no	0.966	0.966	0.686	0.0
Q2QNK7	591	Solute carrier family 40	yes	no	0.884	0.895	0.591	1e-179
B9FGV7	593	Solute carrier family 40	no	no	0.943	0.951	0.458	1e-135
Q5Z922	484	Solute carrier family 40	no	no	0.697	0.861	0.260	6e-18
O80905	524	Solute carrier family 40	no	no	0.678	0.774	0.243	5e-16
F4KGN5	512	Solute carrier family 40	no	no	0.700	0.818	0.229	6e-16
Q9I9R3	562	Solute carrier family 40	yes	no	0.715	0.761	0.215	5e-15
Q9NP59	571	Solute carrier family 40	yes	no	0.540	0.565	0.230	2e-14
Q9JHI9	570	Solute carrier family 40	yes	no	0.540	0.566	0.236	9e-14
Q923U9	570	Solute carrier family 40	yes	no	0.540	0.566	0.233	2e-13

>sp|Q8W4E7|S40A3_ARATH Solute carrier family 40 member 3, chloroplastic OS=Arabidopsis thaliana GN=IREG3 PE=1 SV=1

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/594 (68%), Positives = 471/594 (79%), Gaps = 16/594 (2%)

Query: 12  SFN-LFNVSAGKASALSQQPPSRIRY-RLSSRRWLNLDSISASHR----FVSRCSITNTE 65
           SF+ LF+    ++  LS    S +RY R  S RWL+L S  +  R    F SRCSITNT+
Sbjct: 13  SFDFLFHFPVDRSRFLSPVAFSSVRYHRFHSCRWLSLRSSPSCSRRLNSFSSRCSITNTD 72

Query: 66  VQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLL 125
           V  + V  DDE+ ED+ T   +  + +V L++ +          +SLTLLTE T+VD++L
Sbjct: 73  VCHEFVTTDDEIHEDLLTPIEDHSIPIVHLDTNISV-------TESLTLLTECTYVDTVL 125

Query: 126 TTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVA 185
           T +PVLSEEEQ  +AATPAHPEGLY LYA CL GNLVEQLWNFAWPSAIA+L+PSLLPVA
Sbjct: 126 TALPVLSEEEQTVIAATPAHPEGLYVLYASCLVGNLVEQLWNFAWPSAIAMLYPSLLPVA 185

Query: 186 VMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTS-S 244
           VMGF +KL +I GGP+VGK MD+SPR+P YI LN +QAAAQ+LSA MIIHA+TV  TS S
Sbjct: 186 VMGFVTKLAIIAGGPVVGKFMDYSPRVPTYISLNVIQAAAQVLSAGMIIHAYTVPSTSAS 245

Query: 245 SMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC 304
           S+LL PWFF L+ AGA++ L G+A GVA+ERDW VLLAGINRPIALA+ANAVL+RIDLLC
Sbjct: 246 SILLQPWFFALLFAGAIDSLCGIASGVAIERDWVVLLAGINRPIALAQANAVLHRIDLLC 305

Query: 305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCC 364
           EIAG  LFGILLSKY+PVTCLKFAA L++ SLP M  L W TNK SSGVLDR KCS + C
Sbjct: 306 EIAGTMLFGILLSKYDPVTCLKFAATLMVGSLPTMTALIWLTNKFSSGVLDRPKCSLNSC 365

Query: 365 RTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFL 424
             S EG   + D+I D+G+E IKLGWKEY+QQPVLPASLAYVLL  N+VLTPGSLMTAFL
Sbjct: 366 --SAEGSRTNTDSIFDIGMETIKLGWKEYIQQPVLPASLAYVLLYFNIVLTPGSLMTAFL 423

Query: 425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW 484
           TQR +NPS+IGGFSGLCA MGVAATFLSA LV+R+GILKAGA GL FQASLLA+AVAVY 
Sbjct: 424 TQRCVNPSVIGGFSGLCAVMGVAATFLSANLVKRVGILKAGAVGLFFQASLLAVAVAVYC 483

Query: 485 SGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVES 544
           S SLS ++PL FFL +IVLSRLGHMSY +VGAQILQTGIPSSKANLIG TEISVASL ES
Sbjct: 484 SSSLSHKSPLFFFLSMIVLSRLGHMSYGVVGAQILQTGIPSSKANLIGATEISVASLAES 543

Query: 545 VMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFDPQS 598
           +MLGVAI AND SHFGFLA LSLLSVV A+ +FC  L NPTDEQR LFSFDP S
Sbjct: 544 LMLGVAIAANDASHFGFLAVLSLLSVVAASLIFCRLLRNPTDEQRRLFSFDPLS 597

Probable plastid transporter that may play a role in iron chelation, storage or sequestration under limiting iron conditions. In presence of exogenous antibiotics, may allow opportunistic entry of multiple aminoglycoside antibiotics into the chloroplast.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2QNK7|S40A2_ORYSJ Solute carrier family 40 member 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os12g0562100 PE=2 SV=1

 Score =  629 bits (1623), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 324/548 (59%), Positives = 396/548 (72%), Gaps = 19/548 (3%)

Query: 54  RFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLT 113
            FV RC ITN EV + H + + E  +D       C + VV L           +   S  
Sbjct: 53  NFVPRCYITNVEVDVSHTS-EQEALDDHPPLLPACAIPVVHLRD---------VPDASPF 102

Query: 114 LLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSA 173
            L E     +    +PVLSE E + +AATPAHP GLYALYA  L GNLVEQLWNFAWP+A
Sbjct: 103 PLHESASHSTDFEELPVLSEGELHTIAATPAHPAGLYALYASYLFGNLVEQLWNFAWPAA 162

Query: 174 IALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMI 233
           +A+LHPSLLPVA++GFF+KL + +G P+VGKLMDH PRIP Y  LN VQ A QL+SAAM+
Sbjct: 163 LAILHPSLLPVAIVGFFTKLSVFIGAPIVGKLMDHFPRIPMYTGLNAVQVATQLISAAMV 222

Query: 234 IHAHTVI--PTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALA 291
           I+A   +   ++S+++L PWF  LV AGA+ERL G+ALGVA+ERDW VLLAG NRP+ALA
Sbjct: 223 IYAMKNVTHASTSAVVLKPWFIALVAAGAIERLAGLALGVAMERDWVVLLAGTNRPVALA 282

Query: 292 KANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISS 351
           +ANAVLNR+DL+CE  GAS+FG+LLSKY PVTCLK A GL++ S PV+++L    N+ S 
Sbjct: 283 QANAVLNRLDLVCETVGASVFGLLLSKYHPVTCLKIACGLMICSFPVLVVLGQLINRFSC 342

Query: 352 GVLD--RAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLC 409
             LD  R    +S C       + D   IV  G+ AI+ GW EY QQ VLPAS+A V L 
Sbjct: 343 HALDSSRTPSEESICAN-----LLDVRKIVQNGLSAIRNGWNEYKQQTVLPASVATVFLN 397

Query: 410 LNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL 469
            NV L PG++MTA L  RG++PSI+G FSGLC+ MG+ ATF+S+ LV R+GILKAGAAGL
Sbjct: 398 FNVALAPGAIMTALLMHRGISPSIVGAFSGLCSIMGLVATFISSSLVERVGILKAGAAGL 457

Query: 470 IFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKAN 529
           I QASLL++A+ VYW+GS+SQ+ PLL FL  I LSRLGHMSYD+VG QILQTG+P+SKAN
Sbjct: 458 IVQASLLSVALVVYWTGSISQRTPLLIFLAAIALSRLGHMSYDVVGTQILQTGVPASKAN 517

Query: 530 LIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQR 589
           LIG  E+S++SL E VMLG+AIIANDVSHFGFLA LS+ SV GAAWMFC WL NPTDEQR
Sbjct: 518 LIGGMEVSISSLAELVMLGMAIIANDVSHFGFLAILSVSSVAGAAWMFCQWLGNPTDEQR 577

Query: 590 SLFSFDPQ 597
            LF FDP 
Sbjct: 578 ELFMFDPH 585

May be involved in iron transport and iron homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B9FGV7|S40A3_ORYSJ Solute carrier family 40 member 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0131500 PE=3 SV=1

 Score =  481 bits (1237), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/578 (45%), Positives = 366/578 (63%), Gaps = 14/578 (2%)

Query: 25  ALSQQPPSRIRYRLSSRRWLNLDSISASHRFVSRCSITNTE-----VQLDHVAADDEVRE 79
           ALS+ P  R+           L  +++   F + CS +++E            A D++  
Sbjct: 18  ALSRLPCRRVAPPPVLPFPFPLRRLTSRRVFATSCSSSDSEHAPSASSTALAGAGDDLSA 77

Query: 80  DMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSE--EEQN 137
            + T E E  +  VQL+S ++    E   +             S    +  L+    E +
Sbjct: 78  GV-TQEREGALPFVQLSSGIVLRTEEQSLLGDHAPAPAPASAASSFALLDELNGGCREDD 136

Query: 138 ALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILI 196
            L  TPA+P  + ALYA CLAGN  EQLWNF WP+A+A+LHP S+LPVAV+GFF+KL++ 
Sbjct: 137 HLGETPAYPAAMNALYAACLAGNATEQLWNFTWPAAVAVLHPASILPVAVLGFFTKLVVF 196

Query: 197 VGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSS-SMLLHPWFFVL 255
             GPLVG+L+   PRIPAY  L  +Q AA L+S A I +A  V   ++ S+LL PWF VL
Sbjct: 197 AAGPLVGELISSLPRIPAYRSLAAIQTAAHLVSVATITYAFAVHRAAAASLLLRPWFAVL 256

Query: 256 VLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGIL 315
           V + AV+RL  VALG+  ERD+ V LAG  RP+ALAKANA L+R+DLLCE  GAS+F +L
Sbjct: 257 VASTAVDRLACVALGIIAERDFVVQLAGAGRPVALAKANATLSRVDLLCETVGASIFALL 316

Query: 316 LSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDA 375
           LSK  P+TC+K +  + + +LP++I L    N+++ G+ D ++ + S    ++   +   
Sbjct: 317 LSKNNPLTCIKLSCVISLCALPLLIFLCGEMNRLADGIFDHSENTTSHAEKTSSFSI--- 373

Query: 376 DNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIG 435
              V+  +  ++ GW EYM+QPVLPASLAYV +C NV L PG+LMT FL  +G+ PS+IG
Sbjct: 374 RKTVEEAVATVRNGWSEYMRQPVLPASLAYVFVCFNVALAPGALMTTFLIHQGVRPSVIG 433

Query: 436 GFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL 495
            F G   ++G+ ATF +A LV+ LGILKAGAAGLI Q++LL  AV VY +G++S++   L
Sbjct: 434 AFGGSSGAVGILATFATARLVKELGILKAGAAGLIAQSALLGAAVVVYLTGAVSRRAGAL 493

Query: 496 F-FLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIAN 554
           F FL LIV SR GHM+Y  +G Q++QTG P+SKA LIG TEI+VASL E  M+ VA++A+
Sbjct: 494 FAFLGLIVASRAGHMAYSAIGLQVVQTGNPASKAKLIGATEIAVASLAELAMMAVAVVAS 553

Query: 555 DVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLF 592
           D SHFG LA LS  +V  AA M+C WL NP+DE R +F
Sbjct: 554 DASHFGALAALSATAVTAAAGMYCRWLANPSDELRRIF 591

May be involved in iron transport and iron homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5Z922|S40A1_ORYSJ Solute carrier family 40 member 1 OS=Oryza sativa subsp. japonica GN=Os06g0560000 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 201/449 (44%), Gaps = 32/449 (7%)

Query: 164 QLWNFA--------WPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAY 215
           ++W F+        WP        SLL  AV G      +   GP+VG ++D    +   
Sbjct: 39  RMWEFSVGLYMIRIWPG-------SLLLTAVYGVVEASAVAALGPIVGAVVDRLAYLQVL 91

Query: 216 ICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVL----AGAVERLTGVALGV 271
                +Q A+  ++A + + A  V     +    P F  LV+    +GA+  L+ +A  +
Sbjct: 92  RLWLLLQGAS-FVAAGVSVTALLVYGARLAAAGFPAFVALVVVTNVSGALAALSTLAGTI 150

Query: 272 AVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGL 331
            +ER+W V++AG      L   N+V+ RIDL C++    L G  +S    V+    AA L
Sbjct: 151 LIEREWVVVIAGGQPAAVLTGINSVIRRIDLSCKLLAPVLSGFFISF---VSMEASAAAL 207

Query: 332 IMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPV-----PDADNIVDVGIEAI 386
             W+L  + +  W    + +G    ++ SQ   R +++        P     + + +   
Sbjct: 208 AAWNLAAVWVQYWLFVSVYAGFPALSETSQISRRRADDDEAAAAAQPQKVERLWMTMLPC 267

Query: 387 KLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGV 446
              W  Y +Q V+   +A   L   V L+ G+LMTA L   G+   +I    G+ A++G+
Sbjct: 268 WESWAVYARQEVVLPGVALAFLYFTV-LSFGTLMTATLDWEGIPAYVISLARGVSAAVGI 326

Query: 447 AATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRL 506
           AAT++      R+  L+AG   +  Q   L + VA  W+G  +        +  +  SRL
Sbjct: 327 AATWVYPAAHARVSTLRAGLWSIWAQWCCLLVCVASVWAGGAAPLASAWMLMGGVAASRL 386

Query: 507 GHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLS 566
           G   +D+   Q++Q G+P S   ++G  + S+ S+ + +   + II +D   FG L  LS
Sbjct: 387 GLWMFDLAVMQLMQDGVPESDRCVVGGVQNSLQSMFDLLTYVMGIIVSDPRDFGELIVLS 446

Query: 567 LLSVVGAAWMFCHWLLNPTDEQRSLFSFD 595
              V  AA M+    ++    ++ LF  D
Sbjct: 447 FFLVTCAAAMYT---MHVYRVRKHLFHLD 472

May be involved in iron transport and iron homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O80905|S40A1_ARATH Solute carrier family 40 member 1 OS=Arabidopsis thaliana GN=IREG1 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 193/456 (42%), Gaps = 50/456 (10%)

Query: 152 LYACCLAGNLVEQLWNFAWPSAIALLH---PSLLPVAVMGFFSKLILIVGGPLVGKLMDH 208
           LY          + W F+   A+ ++H    SLL  A+ G        + GP+VG+ ++ 
Sbjct: 41  LYVGYFLARWSARTWEFS--VALYMIHLWPNSLLLAAIYGAIESGSTAIFGPIVGQWVEG 98

Query: 209 SPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLV----LAGAVERL 264
              +         Q  +  ++   +I    V    S  L  P F +L+    LAGA+  L
Sbjct: 99  MDYVKVLRLWLLFQNLSYTIAGGAVIKLLLVSDLKSRNL--PVFAILIVLTNLAGAIGVL 156

Query: 265 TGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE-PVT 323
           + +A  + +ERDWAV+++  + P  L K N+V+  IDL  ++    + G+++S      +
Sbjct: 157 STLAGTILIERDWAVVMSEGHPPAVLTKMNSVIRGIDLSSKLLSPVITGLIISFVSLKAS 216

Query: 324 CLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDV-- 381
            + FAA    W+     +  W    + SGV    + ++     S    V   D  V V  
Sbjct: 217 AITFAA----WATITAWVEYWLFISVYSGVPAITRSNERRILRSRTKQVEGRDAPVSVSI 272

Query: 382 --GIEAIKLG-----------------------WKEYMQQPVLPASLAYVLLCLNVVLTP 416
             G E    G                       W+ Y  Q V+   ++  LL   V L+ 
Sbjct: 273 VPGTEEGYTGNPPSRTGILVILDRMSKSSFVGAWRIYFNQEVVLPGVSLALLFFTV-LSF 331

Query: 417 GSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLL 476
           G+LMTA L   G+   IIG   G+ A++G+AAT +   +  RL  L+ G      Q S L
Sbjct: 332 GTLMTATLQWEGIPTYIIGIGRGISATVGLAATLVYPLMQSRLSTLRTGLWSFWSQWSCL 391

Query: 477 AMAVAVYWSGSLSQQNPLLFFLCL--IVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTT 534
            + V   W     +++ +  ++ +  +  SRLG   +D+   Q +Q  +  S   ++G  
Sbjct: 392 LVCVGSIW----VKKDKIASYMLMAGVAASRLGLWMFDLAVIQQMQDLVSESDRCVVGGV 447

Query: 535 EISVASLVESVMLGVAIIANDVSHFGFLATLSLLSV 570
           + S+ S ++ +   + II ++   F  L  +S  +V
Sbjct: 448 QNSLQSALDLMAYLLGIIVSNPKDFWILTLISFSTV 483

May be involved in iron transport and iron homeostasis.

Arabidopsis thaliana (taxid: 3702)

>sp|F4KGN5|S40A2_ARATH Solute carrier family 40 member 2 OS=Arabidopsis thaliana GN=IREG2 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 197/462 (42%), Gaps = 43/462 (9%)

Query: 143 PAHPEGLY-ALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGP 200
           P+ P  +  +LY          + W F+    +  L P SL   A+ G        + GP
Sbjct: 27  PSLPRSMVISLYLGYFLARWGARTWEFSVALYMIYLWPNSLFLTAMYGVVESGSATLFGP 86

Query: 201 LVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLV---- 256
           +VG+++D    +         Q  + +++   ++ A  V+P   S    P F  LV    
Sbjct: 87  IVGQMIDGMSYVKVLRLWLVTQNLSFIVAGGAVV-ALLVVPDLKSQNF-PVFATLVVLTN 144

Query: 257 LAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILL 316
           L+GA+  L+ +A  V +ERDW V+++  + P  L + N+V+  IDL  ++    + G+++
Sbjct: 145 LSGAIGVLSTLAGTVLIERDWVVVMSEGHSPAVLTRMNSVIRGIDLSSKLLSPVITGLII 204

Query: 317 SKYE-PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDA 375
           S      + + FAA    W+   + I  W    + +GV    +  +     S++    + 
Sbjct: 205 SFVSLRASAITFAA----WATITVWIEYWLFISVYNGVPAIVQSDERRSLRSSQSQAEET 260

Query: 376 DN---------------------------IVDVGIEAIKLGWKEYMQQPVLPASLAYVLL 408
           D+                           +  +   +    W+ Y+ Q ++   ++  LL
Sbjct: 261 DSASSFYVPLLHEEESYRNTQSRSRILRILERISESSFVSAWRNYLNQEIVLPGVSLALL 320

Query: 409 CLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG 468
              V L+ G+LMTA L  +G+   IIG   G+ A +G+AAT L   +  R+  L+ G   
Sbjct: 321 FFTV-LSFGTLMTATLEWKGIPTYIIGIGRGISAGVGLAATVLYPLMQSRISPLRTGVWS 379

Query: 469 LIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKA 528
              Q + L + V   W       + +L  +  +  SRLG   +D+   Q +Q  +P S  
Sbjct: 380 FWSQWTCLLVCVGSIWVEKEKIASYML--MAGVAASRLGLWMFDLAVIQQMQDLVPESDR 437

Query: 529 NLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSV 570
            ++G  + S+ S ++ +   + II ++   F  L  +S  +V
Sbjct: 438 CVVGGVQNSLQSALDLMANLLGIIVSNPKDFWMLTLISFATV 479

Vacuolar transporter that is involved in the transport of excess nickel into the vacuole under iron deficiency, increasing cellular tolerance to nickel under iron deficiency stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9I9R3|S40A1_DANRE Solute carrier family 40 member 1 OS=Danio rerio GN=slc40a1 PE=2 SV=2

 Score = 83.2 bits (204), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 110/511 (21%), Positives = 202/511 (39%), Gaps = 83/511 (16%)

Query: 163 EQLWNFAWPSAIALLH-PSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
           +++WNFA    +  L+  SLL  AV G      +++ G ++G  +D +PR+        V
Sbjct: 36  DRMWNFAVAVFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNPRLKVAQTSLVV 95

Query: 222 QAAAQLLSAAMIIHAHTVIPTSSSM----LLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
           Q +A +L  A+++         SSM    LL   + +++    +  L   A+ + ++RDW
Sbjct: 96  QNSAVILCGALLMAVFQFKQQLSSMYDGWLLTTCYIMVISIANIANLASTAMSITIQRDW 155

Query: 278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
            V++AG +R   LA  NA +  ID L  I    L G +++         F +G  ++S+ 
Sbjct: 156 VVVVAGDDRS-KLADMNATVRIIDQLTNILAPMLVGQIMAFGSHFIGCGFISGWNLFSMC 214

Query: 338 VMIILTWFTNKISSGVLDRAKCSQSCCRT-----------SNEGPV-------PDADNIV 379
           +   L W   + +  +  +A    S  +            + E PV         ++   
Sbjct: 215 LEYFLLWKVYQKTPALAFKAGQKDSDDQELKHLNIQKEIGNTESPVEASQLMTESSEPKK 274

Query: 380 DVG--------IEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNP 431
           D G        I   K GW  Y  Q +  A ++   L +  VL    + T +   +GLN 
Sbjct: 275 DTGCCYQMAEPIRTFKDGWVAYYNQSIFFAGMSLAFLYMT-VLGFDCITTGYAYTQGLNG 333

Query: 432 SIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW------- 484
           S++    G  A  G+  T    ++ ++ G+++ G    + Q S L + VA  +       
Sbjct: 334 SVLSLLMGASAVSGICGTVAFTWIRKKCGLIRTGFIAGVTQLSCLTLCVASVFAPGSPFD 393

Query: 485 ----------------SGSLS-------------QQNPLLF--------------FLCLI 501
                           SGSL              Q N  +F                  +
Sbjct: 394 LSVSPFEEVLRHLFGDSGSLRESPTFIPTTEPPIQANVTVFEEAPPVESYMSVGLLFAGV 453

Query: 502 VLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGF 561
           + +R+G  S+D+   Q++Q  +  S+  +I   + S+  L++ +   + I+A +   FG 
Sbjct: 454 IAARVGLWSFDLTVTQLIQENVIESERGVINGVQNSMNYLLDLLHFIMVILAPNPEAFGL 513

Query: 562 LATLSLLSVVGAAWMFCHWLLNPTDEQRSLF 592
           L  +S+  V     M+  +       +  LF
Sbjct: 514 LVIISVSFVAMGHMMYFRFAYKSLGSRLFLF 544

May be involved in iron export and also in transfer of iron between maternal and fetal circulation.

Danio rerio (taxid: 7955)

>sp|Q9NP59|S40A1_HUMAN Solute carrier family 40 member 1 OS=Homo sapiens GN=SLC40A1 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 152/360 (42%), Gaps = 37/360 (10%)

Query: 163 EQLWNFAWPSAIALLH-PSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
           +++W+FA    +  L+  SLL  AV G      ++V G ++G  +D + R+        V
Sbjct: 39  DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVV 98

Query: 222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
           Q  + +L   ++    +H H ++      +L   + +++    +  L   A  + ++RDW
Sbjct: 99  QNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYILIITIANIANLASTATAITIQRDW 158

Query: 278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
            V++AG +R   LA  NA + RID L  I      G +++   PV    F +G  + S+ 
Sbjct: 159 IVVVAGEDRS-KLANMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMC 217

Query: 338 VMIILTWFTNK------ISSGVLDRAKCSQSCCRTSNEGPVP---------DADNIVDVG 382
           V  +L W   +      + +G+ +     +      +  P P            NI ++ 
Sbjct: 218 VEYVLLWKVYQKTPALAVKAGLKEEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELE 277

Query: 383 IE--------------AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRG 428
            E                + GW  Y  QPV  A +    L +  VL    + T +   +G
Sbjct: 278 HEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMT-VLGFDCITTGYAYTQG 336

Query: 429 LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAG-AAGLIFQASLLAMAVAVYWSGS 487
           L+ SI+    G  A  G+  T    +L R+ G+++ G  +GL   + L+   ++V+  GS
Sbjct: 337 LSGSILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGS 396

May be involved in iron export from duodenal epithelial cell and also in transfer of iron between maternal and fetal circulation. Mediates iron efflux in the presence of a ferroxidase (hephaestin and/or ceruloplasmin).

Homo sapiens (taxid: 9606)

>sp|Q9JHI9|S40A1_MOUSE Solute carrier family 40 member 1 OS=Mus musculus GN=Slc40a1 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 153/360 (42%), Gaps = 37/360 (10%)

Query: 163 EQLWNFAWPSAIALLH-PSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
           +++W+FA    +  L+  SLL  AV G      ++V G ++G  +D + R+        V
Sbjct: 39  DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVV 98

Query: 222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
           Q  + +L   ++    +H + ++      +L   + +++    +  L   A  + ++RDW
Sbjct: 99  QNVSVILCGIILMMVFLHKNELLTMYHGWVLTVCYILIITIANIANLASTATAITIQRDW 158

Query: 278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
            V++AG NR   LA  NA + RID L  I      G +++   PV    F +G  + S+ 
Sbjct: 159 IVVVAGENRS-RLADMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMC 217

Query: 338 VMIILTWFTNKISSGVLDRA--KCSQSCCRT----SNEGPVP---------DADNIVDVG 382
           V   L W   + +  +  +A  K  +S  +      +  P P            NI ++ 
Sbjct: 218 VEYFLLWKVYQKTPALAVKAALKVEESELKQLTSPKDTEPKPLEGTHLMGEKDSNIRELE 277

Query: 383 IE--------------AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRG 428
            E                + GW  Y  QPV  A +    L +  VL    + T +   +G
Sbjct: 278 CEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMT-VLGFDCITTGYAYTQG 336

Query: 429 LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGA-AGLIFQASLLAMAVAVYWSGS 487
           L+ SI+    G  A  G+  T    +L R+ G+++ G  +GL   + L+   ++V+  GS
Sbjct: 337 LSGSILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLFSGLAQLSCLILCVISVFMPGS 396

May be involved in iron export from duodenal epithelial cell and also in transfer of iron between maternal and fetal circulation. Mediates iron efflux in the presence of a ferroxidase (hephaestin and/or ceruloplasmin).

Mus musculus (taxid: 10090)

>sp|Q923U9|S40A1_RAT Solute carrier family 40 member 1 OS=Rattus norvegicus GN=Slc40a1 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 153/360 (42%), Gaps = 37/360 (10%)

Query: 163 EQLWNFAWPSAIALLHPS-LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
           +++W+FA    +  L+ + LL  AV G      ++V G ++G  +D + R+        V
Sbjct: 39  DRMWHFAVSVFLVELYGNGLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVV 98

Query: 222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
           Q  + +L   ++    +H + ++      +L   + +++    +  L   A  + ++RDW
Sbjct: 99  QNVSVILCGIILMMVFLHKNELLNMYHGWVLTVCYILIITIANIANLASTATAITIQRDW 158

Query: 278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
            V++AG NR   LA  NA + RID L  I      G +++   PV    F +G  + S+ 
Sbjct: 159 IVVVAGENRS-RLADMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMC 217

Query: 338 VMIILTWFTNKISSGVLDRA--KCSQSCCRT----SNEGPVP---------DADNIVDVG 382
           V   L W   + +  +  +A  K  +S  +      +  P P            NI ++ 
Sbjct: 218 VEYFLLWKVYQKTPALAVKAALKVEESELKQLTSPKDTEPKPLEGTHLMGEKDSNIRELE 277

Query: 383 IE--------------AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRG 428
            E                + GW  Y  QPV  A +    L +  VL    + T +   +G
Sbjct: 278 CEQEPTCASQIAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMT-VLGFDCITTGYAYTQG 336

Query: 429 LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGA-AGLIFQASLLAMAVAVYWSGS 487
           L+ SI+    G  A  G+  T    +L R+ G+++ G  +GL   + L+   ++V+  GS
Sbjct: 337 LSGSILSVLMGASAITGIMGTVAFTWLRRKCGLVRTGLFSGLAQLSCLILCVISVFMPGS 396

May be involved in iron export from duodenal epithelial cell and also in transfer of iron between maternal and fetal circulation. Mediates iron efflux in the presence of a ferroxidase (hephaestin and/or ceruloplasmin).

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	598
449454002	604	PREDICTED: solute carrier family 40 memb	0.979	0.970	0.720	0.0
255542912	596	conserved hypothetical protein [Ricinus	0.971	0.974	0.729	0.0
224124478	650	ferroportin protein family [Populus tric	0.968	0.890	0.676	0.0
225450573	564	PREDICTED: solute carrier family 40 memb	0.916	0.971	0.723	0.0
22327094	598	iron-regulated protein 3 [Arabidopsis th	0.966	0.966	0.686	0.0
356535006	587	PREDICTED: solute carrier family 40 memb	0.934	0.952	0.714	0.0
297808711	594	hypothetical protein ARALYDRAFT_489514 [	0.966	0.973	0.673	0.0
449530126	475	PREDICTED: solute carrier family 40 memb	0.749	0.943	0.771	0.0
147788973	871	hypothetical protein VITISV_020103 [Viti	0.832	0.571	0.624	0.0
326505530	585	predicted protein [Hordeum vulgare subsp	0.913	0.933	0.576	1e-178

>gi|449454002|ref|XP_004144745.1| PREDICTED: solute carrier family 40 member 3, chloroplastic-like [Cucumis sativus]

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/601 (72%), Positives = 503/601 (83%), Gaps = 15/601 (2%)

Query: 5   LAISQPVSFNLFNVSAGKASALSQQPPSRIRYR-LSSRRWLNLDS--ISAS---HRFVSR 58
           LA+SQP SF+ F  S  + S LS    SR+RYR +S RR  NL    IS+S    R +S+
Sbjct: 7   LALSQPYSFSCFKFSIREVSLLSHS--SRVRYRFVSCRRLKNLRQTCISSSSRLQRVISK 64

Query: 59  CSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEG 118
           CSITN++VQ D V+ +D+V+E +S+ E +C +++VQLNS  L+ ++  LQ + L+LLTEG
Sbjct: 65  CSITNSDVQFDQVSVEDDVQEALSSVEADCSLAIVQLNSGFLEADTLTLQTEPLSLLTEG 124

Query: 119 TFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLH 178
           T+VDSLLTT+PVLSEEEQN LAATPAHP GLYALYA C+AGNLVEQLWNFAWPSAIALLH
Sbjct: 125 TYVDSLLTTLPVLSEEEQNVLAATPAHPAGLYALYASCIAGNLVEQLWNFAWPSAIALLH 184

Query: 179 PSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHT 238
           PSLLPVAVMGFF+KL LIVGGPLVGK MD+ PR+PAY CLN VQAAAQLLSA+M+I+AHT
Sbjct: 185 PSLLPVAVMGFFTKLALIVGGPLVGKFMDNFPRVPAYTCLNCVQAAAQLLSASMVIYAHT 244

Query: 239 VIPT--SSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV 296
           V  T  SSS+LL PWF  L+ AGA+ERL+G+ALGVA+ERDW VLLAGINRPIALA+ANAV
Sbjct: 245 VPHTAASSSILLQPWFVTLIFAGAIERLSGIALGVAMERDWVVLLAGINRPIALAEANAV 304

Query: 297 LNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDR 356
           L+RIDLLCEI GASLFGI+LSKY+PVTCLK AAGL++WSLPV+++LTW TN++S+GVLDR
Sbjct: 305 LSRIDLLCEIVGASLFGIILSKYDPVTCLKCAAGLMLWSLPVVVLLTWLTNQLSTGVLDR 364

Query: 357 AKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTP 416
           AKC Q+CC    E   P     V+VG+E IK GWKEY+QQP LPASLAYVLL  N VL P
Sbjct: 365 AKCLQTCCGDPTEVTSP-----VNVGVEVIKNGWKEYLQQPALPASLAYVLLYFNAVLAP 419

Query: 417 GSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLL 476
           GSLMTAFLTQ+GL+PSIIGGFSGLCA MGV ATF+SA LVR+ GILKAGA GLIFQA+LL
Sbjct: 420 GSLMTAFLTQQGLSPSIIGGFSGLCAFMGVTATFVSANLVRQFGILKAGAVGLIFQAALL 479

Query: 477 AMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEI 536
            +AVAVY SGSLS+Q+PLLFFL +IVLSRLGHMSY++VG QILQTGIPSSK NLI TTE+
Sbjct: 480 TVAVAVYLSGSLSRQSPLLFFLVMIVLSRLGHMSYNVVGQQILQTGIPSSKTNLIATTEV 539

Query: 537 SVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFDP 596
           SVASL ES+MLGVAIIAND SHFGFLA LSLLSVVGAA +FC WLLNPTDEQR LFSF  
Sbjct: 540 SVASLAESIMLGVAIIANDTSHFGFLAMLSLLSVVGAAVIFCQWLLNPTDEQRKLFSFSS 599

Query: 597 Q 597
           Q
Sbjct: 600 Q 600

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542912|ref|XP_002512519.1| conserved hypothetical protein [Ricinus communis] gi|223548480|gb|EEF49971.1| conserved hypothetical protein [Ricinus communis]

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/596 (72%), Positives = 497/596 (83%), Gaps = 15/596 (2%)

Query: 5   LAISQPVSFNLFNVSAGKASALSQQP-PSRIRYRLSSRRWLNLDSISASHRFV---SRCS 60
           L +   V+ N+F++   + ++LS  P  SRIRYRLS+RRWL+    S S RF    SRCS
Sbjct: 8   LPVHPNVNVNVFSI---RKASLSATPHASRIRYRLSTRRWLSFGPASLSCRFSNLNSRCS 64

Query: 61  ITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTF 120
           ITN+E Q   V  +DE  + +S  E +C       ++ +  I S++L+   L+LL E TF
Sbjct: 65  ITNSESQCSSVLTEDEAPQHVSEIEPDC-------SAPIFHIKSDVLESQPLSLLVETTF 117

Query: 121 VDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPS 180
           VDSLLT +PVLSEEEQNALAATPAHP GLYA YA CLAGNLVEQLWNFAWPSAIAL+HPS
Sbjct: 118 VDSLLTALPVLSEEEQNALAATPAHPVGLYAFYASCLAGNLVEQLWNFAWPSAIALIHPS 177

Query: 181 LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVI 240
           LLPVAVMGFF+KL +I GGPLVGKLMD+SPRIP+ I LN VQ AAQLLSA+MIIHAHTV 
Sbjct: 178 LLPVAVMGFFTKLAIIAGGPLVGKLMDYSPRIPSSIGLNIVQVAAQLLSASMIIHAHTVS 237

Query: 241 PTS-SSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNR 299
           PTS SS+LLHPWF VLV+AGA+ERL GVALGVA+ERDW VLLAGINRPIALA+ANAVLNR
Sbjct: 238 PTSASSILLHPWFLVLVVAGAIERLCGVALGVAMERDWVVLLAGINRPIALAQANAVLNR 297

Query: 300 IDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKC 359
           IDLLCEIAGASLFGILL KY+PV+CLK AAGL++WSLP+MI LT  TNK+S+GVLD  + 
Sbjct: 298 IDLLCEIAGASLFGILLCKYDPVSCLKIAAGLMIWSLPIMIGLTLLTNKLSTGVLDHTRS 357

Query: 360 SQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSL 419
           S +CCR S  G +   D+IVD G+E IKLGWKEY+QQPVLPASLAYVLL  NVVL P SL
Sbjct: 358 SHACCRESTGGAMAGVDSIVDRGLETIKLGWKEYLQQPVLPASLAYVLLYFNVVLAPSSL 417

Query: 420 MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMA 479
           MTAFLTQRG+NPSI+ GFSGLCA+MGV ATFLSA LVR+LGILKAGAAGL+FQASLL +A
Sbjct: 418 MTAFLTQRGVNPSIVAGFSGLCAAMGVLATFLSASLVRQLGILKAGAAGLVFQASLLTLA 477

Query: 480 VAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVA 539
           VAVYWSGSLSQQ+PLLFFL LIV+SRLGHMSYD++GAQILQTGIPSSKANLIG TE+S+A
Sbjct: 478 VAVYWSGSLSQQSPLLFFLGLIVVSRLGHMSYDVIGAQILQTGIPSSKANLIGATEVSIA 537

Query: 540 SLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFD 595
           SL ESVMLGVAIIANDVSHFGFLA LSLLSVVGAAWMF  WL NPTDEQRSLF+++
Sbjct: 538 SLAESVMLGVAIIANDVSHFGFLAILSLLSVVGAAWMFWRWLSNPTDEQRSLFAYE 593

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124478|ref|XP_002330033.1| ferroportin protein family [Populus trichocarpa] gi|222871458|gb|EEF08589.1| ferroportin protein family [Populus trichocarpa]

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/650 (67%), Positives = 498/650 (76%), Gaps = 71/650 (10%)

Query: 12  SFNLFNVSAGKASALSQQPPSRIRYRLSSRRWLNLDSISASHRFV---SRCSITNTEVQL 68
           SFN       KAS L     SR+RY ++ RRWLNLDS S+S RF    SRCSITNT++ L
Sbjct: 9   SFNFHGFFVRKASLLPSSA-SRVRYSINDRRWLNLDSASSSCRFRNLNSRCSITNTDLHL 67

Query: 69  DHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTI 128
            +V  +DE  +D+S  E +C   +V L +++L+        +SL+LL E T+VDS+LT +
Sbjct: 68  SNVLTEDEAPQDLSAAECDCSTPIVHLKTDILE-------SESLSLLAETTYVDSVLTAL 120

Query: 129 PVLSEEEQNALAATPAHPEGLY------------------------ALYACCLAGNLVEQ 164
           PVLSEEEQNALAATPAHP GLY                         LYA  LAGNLVEQ
Sbjct: 121 PVLSEEEQNALAATPAHPVGLYDWKSQSLRLKSDFDPIIFLFKKNETLYASSLAGNLVEQ 180

Query: 165 LWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA 224
           LWNFAWPSAIALLHPSLLPVAVM FFSKL +IVGGPLVGKLMD+SPR+PAY+ LN VQAA
Sbjct: 181 LWNFAWPSAIALLHPSLLPVAVMCFFSKLAIIVGGPLVGKLMDYSPRVPAYMGLNVVQAA 240

Query: 225 AQLLSAAMIIHAHTVIPTS-SSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVL--- 280
           AQLLSA MIIHAHTV PTS SS+LL PWF VLVLAGA+ERL GVA GVAVERDW +L   
Sbjct: 241 AQLLSATMIIHAHTVSPTSVSSVLLRPWFIVLVLAGAIERLCGVATGVAVERDWVILVLS 300

Query: 281 --------------------------------LAGINRPIALAKANAVLNRIDLLCEIAG 308
                                           LAG+NRPIALA+ANAVLNRIDL+CEIAG
Sbjct: 301 FCAVIIARFFNGYCFNLLETLAISNAVSLCVQLAGMNRPIALAQANAVLNRIDLICEIAG 360

Query: 309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSN 368
           AS+FGILLSKYEPVTCLKFAA  ++WSLPVMI LTW TNK+++GVLDR +  Q+CC  S+
Sbjct: 361 ASVFGILLSKYEPVTCLKFAAASMIWSLPVMIGLTWLTNKLATGVLDRPRSCQTCCGESS 420

Query: 369 EGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRG 428
           E    DA +IVD G+E IKLGWKEYMQQPVLPASLAYVLL  NVVL P SLMTAFLTQRG
Sbjct: 421 EEAAVDAGSIVDRGLETIKLGWKEYMQQPVLPASLAYVLLFFNVVLAPSSLMTAFLTQRG 480

Query: 429 LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSL 488
           +NPS+IGGFSGLCA MGVAATFLSA LV++LGILKAGAAGL+FQASLL++AVAVYWSGSL
Sbjct: 481 VNPSVIGGFSGLCAFMGVAATFLSATLVKQLGILKAGAAGLVFQASLLSLAVAVYWSGSL 540

Query: 489 SQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLG 548
           SQQ+P+LFFL LIVLSRLGHMSYD+VGAQILQTGIP+SKANLIGTTE+SVASL ESVMLG
Sbjct: 541 SQQSPVLFFLGLIVLSRLGHMSYDVVGAQILQTGIPTSKANLIGTTEVSVASLAESVMLG 600

Query: 549 VAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFDPQS 598
           VAIIAND SHFGFLA LSLLSVVGAAWMFC  L+NPTDEQRSLF+ +  +
Sbjct: 601 VAIIANDASHFGFLAMLSLLSVVGAAWMFCRLLVNPTDEQRSLFAVESNT 650

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450573|ref|XP_002281965.1| PREDICTED: solute carrier family 40 member 1 [Vitis vinifera] gi|296089784|emb|CBI39603.3| unnamed protein product [Vitis vinifera]

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/571 (72%), Positives = 462/571 (80%), Gaps = 23/571 (4%)

Query: 26  LSQQPPSRIRYRLSSRRWLNLDSISAS-HRFVSRCSITNTEVQLDHVAADDEVREDMSTN 84
           L Q P S +R+R SS RWLN  S     + F SRCSITNTEVQ D  A D+ V+ED    
Sbjct: 15  LRQPPSSSLRHRFSSCRWLNRGSAPLRLNGFNSRCSITNTEVQFDQTATDEGVQEDFPDV 74

Query: 85  EMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPA 144
              CPV ++ L S++L+        +   LLTEGT+VDSLLT +PVLSEEEQ ALAATPA
Sbjct: 75  ASNCPVPIIHLKSDILET-------EPFNLLTEGTYVDSLLTALPVLSEEEQTALAATPA 127

Query: 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGK 204
           HP GLYALYA   AG LVEQLWNFAWP+AIALLHPSL PVAV+GFF+KL ++VGGPLVG+
Sbjct: 128 HPAGLYALYASSFAGGLVEQLWNFAWPAAIALLHPSLQPVAVIGFFTKLAVVVGGPLVGQ 187

Query: 205 LMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPT-SSSMLLHPWFFVLVLAGAVER 263
           LMD+ PR+PAY CLN VQA A LLS AMII AHTV  T +SS+LL PWFFVLVLAG+VER
Sbjct: 188 LMDYFPRVPAYNCLNLVQATAHLLSVAMIIRAHTVPSTLASSVLLRPWFFVLVLAGSVER 247

Query: 264 LTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVT 323
           L+G+ALGV VERDW VLLAG NRPIALA+ANAVLNRIDL+CEIAGASLFGILLSKY+ +T
Sbjct: 248 LSGLALGVTVERDWIVLLAGPNRPIALAEANAVLNRIDLVCEIAGASLFGILLSKYDIMT 307

Query: 324 CLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI 383
            LKF AGL+ W++PV+++LTW TNK+SSGVL+R K               DA+  V +G+
Sbjct: 308 YLKFTAGLMTWTVPVVLVLTWLTNKLSSGVLNRTKSH-------------DAEVTVKIGV 354

Query: 384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCAS 443
            AIK GW EY+QQPVLPASLAYVLL  NV L PG LMTAFLTQRGLNPSI+GGFSGLCA 
Sbjct: 355 GAIKHGWMEYLQQPVLPASLAYVLLYFNV-LMPGGLMTAFLTQRGLNPSIVGGFSGLCAF 413

Query: 444 MGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVL 503
           MGVAATF+SA LVRRLG+LKAGAAGLIFQA LL +AVAVYWSGSLSQQ PLLFFLCLIVL
Sbjct: 414 MGVAATFISANLVRRLGMLKAGAAGLIFQAFLLTIAVAVYWSGSLSQQTPLLFFLCLIVL 473

Query: 504 SRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLA 563
           SRLGHMSYD+VG QILQTGIPSSKANLIGTTE SVASL E VMLGVAIIANDVSHFGFLA
Sbjct: 474 SRLGHMSYDVVGTQILQTGIPSSKANLIGTTEASVASLAEFVMLGVAIIANDVSHFGFLA 533

Query: 564 TLSLLSVVGAAWMFCHWLLNPTDEQRSLFSF 594
            LSL S VGAAWMFC WL+NPT+EQRSLFSF
Sbjct: 534 MLSLFSAVGAAWMFCRWLVNPTEEQRSLFSF 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327094|ref|NP_198034.2| iron-regulated protein 3 [Arabidopsis thaliana] gi|75162463|sp|Q8W4E7.1|S40A3_ARATH RecName: Full=Solute carrier family 40 member 3, chloroplastic; AltName: Full=Ferroportin-3; AltName: Full=Iron-regulated transporter 3; Short=AtIREG3; AltName: Full=Protein MULTIPLE ANTIBIOTIC RESISTANCE 1; Flags: Precursor gi|17065060|gb|AAL32684.1| unknown protein [Arabidopsis thaliana] gi|22136218|gb|AAM91187.1| unknown protein [Arabidopsis thaliana] gi|332006226|gb|AED93609.1| iron-regulated protein 3 [Arabidopsis thaliana]

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/594 (68%), Positives = 471/594 (79%), Gaps = 16/594 (2%)

Query: 12  SFN-LFNVSAGKASALSQQPPSRIRY-RLSSRRWLNLDSISASHR----FVSRCSITNTE 65
           SF+ LF+    ++  LS    S +RY R  S RWL+L S  +  R    F SRCSITNT+
Sbjct: 13  SFDFLFHFPVDRSRFLSPVAFSSVRYHRFHSCRWLSLRSSPSCSRRLNSFSSRCSITNTD 72

Query: 66  VQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLL 125
           V  + V  DDE+ ED+ T   +  + +V L++ +          +SLTLLTE T+VD++L
Sbjct: 73  VCHEFVTTDDEIHEDLLTPIEDHSIPIVHLDTNISV-------TESLTLLTECTYVDTVL 125

Query: 126 TTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVA 185
           T +PVLSEEEQ  +AATPAHPEGLY LYA CL GNLVEQLWNFAWPSAIA+L+PSLLPVA
Sbjct: 126 TALPVLSEEEQTVIAATPAHPEGLYVLYASCLVGNLVEQLWNFAWPSAIAMLYPSLLPVA 185

Query: 186 VMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTS-S 244
           VMGF +KL +I GGP+VGK MD+SPR+P YI LN +QAAAQ+LSA MIIHA+TV  TS S
Sbjct: 186 VMGFVTKLAIIAGGPVVGKFMDYSPRVPTYISLNVIQAAAQVLSAGMIIHAYTVPSTSAS 245

Query: 245 SMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC 304
           S+LL PWFF L+ AGA++ L G+A GVA+ERDW VLLAGINRPIALA+ANAVL+RIDLLC
Sbjct: 246 SILLQPWFFALLFAGAIDSLCGIASGVAIERDWVVLLAGINRPIALAQANAVLHRIDLLC 305

Query: 305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCC 364
           EIAG  LFGILLSKY+PVTCLKFAA L++ SLP M  L W TNK SSGVLDR KCS + C
Sbjct: 306 EIAGTMLFGILLSKYDPVTCLKFAATLMVGSLPTMTALIWLTNKFSSGVLDRPKCSLNSC 365

Query: 365 RTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFL 424
             S EG   + D+I D+G+E IKLGWKEY+QQPVLPASLAYVLL  N+VLTPGSLMTAFL
Sbjct: 366 --SAEGSRTNTDSIFDIGMETIKLGWKEYIQQPVLPASLAYVLLYFNIVLTPGSLMTAFL 423

Query: 425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW 484
           TQR +NPS+IGGFSGLCA MGVAATFLSA LV+R+GILKAGA GL FQASLLA+AVAVY 
Sbjct: 424 TQRCVNPSVIGGFSGLCAVMGVAATFLSANLVKRVGILKAGAVGLFFQASLLAVAVAVYC 483

Query: 485 SGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVES 544
           S SLS ++PL FFL +IVLSRLGHMSY +VGAQILQTGIPSSKANLIG TEISVASL ES
Sbjct: 484 SSSLSHKSPLFFFLSMIVLSRLGHMSYGVVGAQILQTGIPSSKANLIGATEISVASLAES 543

Query: 545 VMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFDPQS 598
           +MLGVAI AND SHFGFLA LSLLSVV A+ +FC  L NPTDEQR LFSFDP S
Sbjct: 544 LMLGVAIAANDASHFGFLAVLSLLSVVAASLIFCRLLRNPTDEQRRLFSFDPLS 597

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535006|ref|XP_003536040.1| PREDICTED: solute carrier family 40 member 1-like [Glycine max]

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/570 (71%), Positives = 472/570 (82%), Gaps = 11/570 (1%)

Query: 32  SRIRYRLSSRRWLNLDSISASHRFV---SRCSITNTEVQLDHVAADDEVREDMSTNEMEC 88
           S IR+R+ S R LNL     SHRF    S+CS+T+T+V L HV  D++  +     E  C
Sbjct: 24  SPIRHRIPSGRRLNLYYPRTSHRFACFGSKCSLTDTDVHLVHVTTDEDEAQGRGVVEPHC 83

Query: 89  PVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEG 148
           PV  V+LN+++L+        +SL LL E TFVD+LLT +PVLSEEEQ+AL+ATPAHP G
Sbjct: 84  PVPFVKLNTDILE-------TESLNLLAEATFVDTLLTALPVLSEEEQHALSATPAHPAG 136

Query: 149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDH 208
           L+A YA CL  N+VEQLWNFAWPSAIAL+HPSLLPVAVM FF+K+ +IVGGPLVGKLMDH
Sbjct: 137 LHAFYASCLTANVVEQLWNFAWPSAIALIHPSLLPVAVMSFFTKVAIIVGGPLVGKLMDH 196

Query: 209 SPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTS-SSMLLHPWFFVLVLAGAVERLTGV 267
            PR+ AY CL  VQA AQLLSAAMII AH+V PTS S++LL PWF +LV AGA+ERL GV
Sbjct: 197 FPRVSAYNCLTIVQATAQLLSAAMIIRAHSVQPTSFSTLLLRPWFVILVSAGAIERLCGV 256

Query: 268 ALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKF 327
           ALGVA ERDW VLLAG+NRPIALA+ANAVLNRIDLLCEIAGA LFG LLSK+ PV CLK 
Sbjct: 257 ALGVANERDWVVLLAGVNRPIALAQANAVLNRIDLLCEIAGAMLFGFLLSKFHPVICLKV 316

Query: 328 AAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIK 387
           A+GL+M  LPV I+  + TNK+S+GVLDR K SQ+CCRT NE    DA +IV  G+EAIK
Sbjct: 317 ASGLMMGLLPVTIVFNYLTNKLSTGVLDRPKPSQTCCRTFNEDSALDASSIVFKGLEAIK 376

Query: 388 LGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVA 447
           LGWKEY+ QPVLPASLA+VLLC N+VLTPGSL+TAFLTQRGL+PSIIGGFSG+CA MGVA
Sbjct: 377 LGWKEYLGQPVLPASLAWVLLCFNIVLTPGSLLTAFLTQRGLHPSIIGGFSGMCALMGVA 436

Query: 448 ATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLG 507
           ATF+S+ LV++ GILKAGA GL+FQA LL+MAVAVYWSG++S Q+PLL FL LI+LSRLG
Sbjct: 437 ATFVSSTLVKQFGILKAGAVGLVFQALLLSMAVAVYWSGTISHQSPLLTFLFLIILSRLG 496

Query: 508 HMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSL 567
           HMSYD+VGAQILQTGIPSSKANLIGTTEI+VASL ES+MLGVAIIAND SHFG LA LSL
Sbjct: 497 HMSYDVVGAQILQTGIPSSKANLIGTTEIAVASLAESIMLGVAIIANDPSHFGCLALLSL 556

Query: 568 LSVVGAAWMFCHWLLNPTDEQRSLFSFDPQ 597
           LSVVGAAWMFC WLLNPTDEQ++LFS+DPQ
Sbjct: 557 LSVVGAAWMFCRWLLNPTDEQKNLFSYDPQ 586

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808711|ref|XP_002872239.1| hypothetical protein ARALYDRAFT_489514 [Arabidopsis lyrata subsp. lyrata] gi|297318076|gb|EFH48498.1| hypothetical protein ARALYDRAFT_489514 [Arabidopsis lyrata subsp. lyrata]

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/594 (67%), Positives = 463/594 (77%), Gaps = 16/594 (2%)

Query: 12  SFN-LFNVSAGKASALSQQPPSRIRYR-----LSSRRWLNLDSISASHRFVSRCSITNTE 65
           SF+ LF+    ++  LS    SR+RY             +       + F SRCSI NT+
Sbjct: 9   SFDFLFHFPVDRSRFLSPVAFSRVRYHRFPSCRWLSLSSSSSCSRRLNSFSSRCSIINTD 68

Query: 66  VQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLL 125
           V  D V  DD++ ED  T   +  + +V L++ +          +SL+LLTE TFVD++L
Sbjct: 69  VCHDFVTTDDDIHEDFLTPIEDHTIPIVHLDTNIAV-------TESLSLLTECTFVDTVL 121

Query: 126 TTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVA 185
           T +PVLSEEEQ  +AATPAHPEGLY LYA CL GNLVEQLWNFAWPSAIA+LHPSLLPVA
Sbjct: 122 TALPVLSEEEQTVIAATPAHPEGLYVLYASCLVGNLVEQLWNFAWPSAIAMLHPSLLPVA 181

Query: 186 VMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPT-SS 244
           VMGF +KL +I GGP+VGK MD+SPR+P YI LN +QAAAQ++SA MIIHA+TV  T +S
Sbjct: 182 VMGFVTKLAIIAGGPVVGKFMDYSPRVPTYISLNVIQAAAQVVSAGMIIHAYTVPSTLAS 241

Query: 245 SMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC 304
           S+LL PWFF L+ AGA++ L G+A GVA+ERDW VLLAGINRPIALA+ANAVL+R+DLLC
Sbjct: 242 SILLQPWFFALLFAGAIDSLCGIASGVAIERDWVVLLAGINRPIALAQANAVLHRMDLLC 301

Query: 305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCC 364
           EIAG  LFGILLSKY+PVTCLKFAA L++ SLP M  L W TNK SSGVLDR KCS S C
Sbjct: 302 EIAGTMLFGILLSKYDPVTCLKFAATLMVGSLPTMTALIWLTNKFSSGVLDRPKCSLSSC 361

Query: 365 RTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFL 424
             S EG   + D+I D+G+E IKLGWKEY+QQPVLPASLAYVLL  N+VLTPGSLMTAFL
Sbjct: 362 --SAEGSRTNTDSIFDIGMETIKLGWKEYIQQPVLPASLAYVLLYFNIVLTPGSLMTAFL 419

Query: 425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW 484
           TQR +NPS+IGGFSGLCA MGVAATFLSA LV+R+GILKAGA GL FQASLLA+AVAVY 
Sbjct: 420 TQRCVNPSVIGGFSGLCAVMGVAATFLSANLVKRVGILKAGAVGLFFQASLLAVAVAVYC 479

Query: 485 SGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVES 544
           S SLSQ++PL FFL +IVLSRLGHMSY +VGAQILQTGIPSSKANLIG TEISVASL ES
Sbjct: 480 SSSLSQKSPLFFFLSMIVLSRLGHMSYGVVGAQILQTGIPSSKANLIGATEISVASLAES 539

Query: 545 VMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFDPQS 598
           +MLGVAI AND SHFGFLA LSLLSVV A+ +FC  L NPTDEQR LFSFDP S
Sbjct: 540 LMLGVAIAANDASHFGFLAVLSLLSVVAASLIFCRLLRNPTDEQRRLFSFDPLS 593

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530126|ref|XP_004172047.1| PREDICTED: solute carrier family 40 member 3, chloroplastic-like [Cucumis sativus]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/455 (77%), Positives = 395/455 (86%), Gaps = 7/455 (1%)

Query: 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGK 204
           + E L ALYA C+AGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFF+KL LIVGGPLVGK
Sbjct: 22  YDEYLTALYASCIAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFTKLALIVGGPLVGK 81

Query: 205 LMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPT--SSSMLLHPWFFVLVLAGAVE 262
            MD+ PR+PAY CLN VQAAAQLLSA+M+I+AHTV  T  SSS+LL PWF  L+ AGA+E
Sbjct: 82  FMDNFPRVPAYTCLNCVQAAAQLLSASMVIYAHTVPHTAASSSILLQPWFVTLIFAGAIE 141

Query: 263 RLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPV 322
           RL+G+ALGVA+ERDW VLLAGINRPIALA+ANAVL+RIDLLCEI GASLFGI+LSKY+PV
Sbjct: 142 RLSGIALGVAMERDWVVLLAGINRPIALAEANAVLSRIDLLCEIVGASLFGIILSKYDPV 201

Query: 323 TCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVG 382
           TCLK AAGL++WSLPV+++LTW TN++S+GVLDRAKC Q+CC    E   P     V+VG
Sbjct: 202 TCLKCAAGLMLWSLPVVVLLTWLTNQLSTGVLDRAKCLQTCCGDPTEVTSP-----VNVG 256

Query: 383 IEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCA 442
           +E IK GWKEY+QQP LPASLAYVLL  N VL PGSLMTAFLTQ+GL+PSIIGGFSGLCA
Sbjct: 257 VEVIKNGWKEYLQQPALPASLAYVLLYFNAVLAPGSLMTAFLTQQGLSPSIIGGFSGLCA 316

Query: 443 SMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIV 502
            MGV ATF+SA LVR+ GILKAGA GLIFQA+LL +AVAVY SGSLS+Q+PLLFFL +IV
Sbjct: 317 FMGVTATFVSANLVRQFGILKAGAVGLIFQAALLTVAVAVYLSGSLSRQSPLLFFLVMIV 376

Query: 503 LSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFL 562
           LSRLGHMSY++VG QILQTGIPSSK NLI TTE+SVASL ES+MLGVAIIAND SHFGFL
Sbjct: 377 LSRLGHMSYNVVGQQILQTGIPSSKTNLIATTEVSVASLAESIMLGVAIIANDTSHFGFL 436

Query: 563 ATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFDPQ 597
           A LSLLSVVGAA +FC WLLNPTDEQR LFSF  Q
Sbjct: 437 AMLSLLSVVGAAVIFCQWLLNPTDEQRKLFSFSSQ 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788973|emb|CAN67070.1| hypothetical protein VITISV_020103 [Vitis vinifera]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/596 (62%), Positives = 416/596 (69%), Gaps = 98/596 (16%)

Query: 26  LSQQPPSRIRYRLSSRRWLN-----LDSISAS---------------------HRFVSRC 59
           L Q P S +R+R SS RWLN     L S  AS                     + F SRC
Sbjct: 347 LRQPPSSSLRHRFSSCRWLNRGSAPLRSAFASTVRHVVVYKIILIRTSSEDLLNGFNSRC 406

Query: 60  SITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGT 119
           SITNTEVQ D  A  + V+ED+      CPV ++ L S++L+        +   LLTEGT
Sbjct: 407 SITNTEVQFDQTATAEGVQEDLPDVASNCPVPIIHLKSDILE-------TEPFNLLTEGT 459

Query: 120 FVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP 179
           +VDSLLT +PVLSEEEQ ALAATPAHP GLYALYA   AG LVEQLWNFAWP+AIALLHP
Sbjct: 460 YVDSLLTALPVLSEEEQTALAATPAHPAGLYALYASSFAGGLVEQLWNFAWPAAIALLHP 519

Query: 180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTV 239
           SL PVAV+GFF+KL ++VGGPLVG+LMD+ PR+PAY CLN VQA A LLS AMII AHTV
Sbjct: 520 SLQPVAVIGFFTKLAVVVGGPLVGQLMDYFPRVPAYNCLNLVQATAHLLSVAMIIRAHTV 579

Query: 240 IPT-SSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLN 298
             T +SS+LL PWFFVLVLAG+VERL+G+ALGV VERDW VLLAG NRPIALA+ANAVLN
Sbjct: 580 PSTLASSVLLRPWFFVLVLAGSVERLSGLALGVTVERDWIVLLAGPNRPIALAEANAVLN 639

Query: 299 RIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAK 358
           RIDL+CE+                                  +LTW TNK+SSGVL+R K
Sbjct: 640 RIDLVCEL----------------------------------VLTWLTNKLSSGVLNRTK 665

Query: 359 CSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGS 418
                          DA+  V +G+ AIK GW EY+QQPVLPASLAYVLL  NV L PG 
Sbjct: 666 SH-------------DAEVTVKIGVGAIKHGWMEYLQQPVLPASLAYVLLYFNV-LMPGG 711

Query: 419 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAM 478
           LMTAFLTQRGLNPSI+GGFSGLCA MGVAATF+SA LVRRLG+LKAGAAGLIFQA LL +
Sbjct: 712 LMTAFLTQRGLNPSIVGGFSGLCAFMGVAATFISANLVRRLGMLKAGAAGLIFQAFLLTI 771

Query: 479 AVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISV 538
           AVAVYWSGSLSQQ PLL                  +   ILQTGIPSSKANLIGTTE SV
Sbjct: 772 AVAVYWSGSLSQQTPLL----------------FFLSLIILQTGIPSSKANLIGTTEASV 815

Query: 539 ASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSF 594
           ASL E VMLGVAIIANDVSHFGFLA LSL S VGAAWMFCHWL+NPT+EQRSLFSF
Sbjct: 816 ASLAEFVMLGVAIIANDVSHFGFLAMLSLFSAVGAAWMFCHWLVNPTEEQRSLFSF 871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326505530|dbj|BAJ95436.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 329/571 (57%), Positives = 412/571 (72%), Gaps = 25/571 (4%)

Query: 33  RIRYRLSSRRWLNLDSISA--SHRFVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPV 90
           R+R R SS        +SA  S+ FV RC I N EV + +V  ++   +D  +    C +
Sbjct: 28  RLRLRPSS------PCVSALRSNNFVQRCYIANVEVDVSNVNKEESAFDDHPSLPPGCSI 81

Query: 91  SVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLY 150
            VV +  ++L  +S     DS       T   +    +PVLSE EQ  LAATPAHP GLY
Sbjct: 82  PVVNILGDVLD-SSPFPPHDS-------TQHHADFEELPVLSEGEQQTLAATPAHPAGLY 133

Query: 151 ALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSP 210
           ALYA  L GNLVEQLWNFAWP+A+A+LHPSLLPVA++GFF KL + +G P+VGKLMDH P
Sbjct: 134 ALYASYLFGNLVEQLWNFAWPAALAILHPSLLPVAIVGFFGKLSVFLGAPIVGKLMDHFP 193

Query: 211 RIPAYICLNTVQAAAQLLSAAMIIHA--HTVIPTSSSMLLHPWFFVLVLAGAVERLTGVA 268
           RIP Y  LN VQ A QL+SAAM+I+A  +    ++S +LL PWF VLV+AGAVERL G+A
Sbjct: 194 RIPMYTGLNAVQVATQLVSAAMVIYALKNAGRTSTSDLLLRPWFIVLVIAGAVERLAGLA 253

Query: 269 LGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFA 328
           LGV++ERDW VLLAG NRP+ALA+ANA+LNR+DLLCE  GAS+FG+LL+KY+ VTCLK +
Sbjct: 254 LGVSMERDWVVLLAGTNRPVALAQANAMLNRLDLLCETVGASVFGLLLTKYDIVTCLKVS 313

Query: 329 AGLIMWSLPVMIILTWFTNKISSGVLD--RAKCSQSCCRTSNEGPVPDADNIVDVGIEAI 386
           + L++ S P++++L    N +S   LD  R    +S C       + D   IV  G+ +I
Sbjct: 314 SALMICSFPILVMLGQLINSVSCHALDSSRTPSDESIC-----ADLLDVRKIVQNGLSSI 368

Query: 387 KLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGV 446
           K GW EY QQ VLPAS+A V L  NV L PG++MTA L  RG++PSI+G FSGLC+ MG+
Sbjct: 369 KHGWNEYKQQTVLPASVATVFLNFNVALAPGAIMTALLMHRGISPSIVGAFSGLCSVMGL 428

Query: 447 AATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRL 506
            ATF+S+ LV+R+GILKAGAAGLIFQASLL++A+ VYW+GS+SQ+ PLL FL  I LSRL
Sbjct: 429 VATFISSSLVKRVGILKAGAAGLIFQASLLSIALTVYWAGSMSQRTPLLIFLASIALSRL 488

Query: 507 GHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLS 566
           GHMSYD+VG QI+QTG+P+SKANLIG  E+S+ASL E VML +AI+ANDVSHFGFLA LS
Sbjct: 489 GHMSYDVVGTQIIQTGVPASKANLIGGMEVSIASLAELVMLAMAIVANDVSHFGFLAILS 548

Query: 567 LLSVVGAAWMFCHWLLNPTDEQRSLFSFDPQ 597
           + SV GAAWMFC WL NPTDEQR LF FDP 
Sbjct: 549 VSSVAGAAWMFCRWLGNPTDEQRELFIFDPH 579

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	598
TAIR|locus:2148523	598	IREG3 "iron-regulated protein	0.983	0.983	0.682	2.6e-205
ASPGD|ASPL0000000841	471	AN6845 [Emericella nidulans (t	0.715	0.908	0.259	9.9e-24
TAIR|locus:2142649	512	IREG2 "iron regulated 2" [Arab	0.295	0.345	0.274	1e-20
UNIPROTKB|Q9NP59	571	SLC40A1 "Solute carrier family	0.302	0.316	0.256	1.5e-20
UNIPROTKB|F1NWJ7	581	ORMDL1 "Uncharacterized protei	0.301	0.309	0.276	5.9e-20
MGI|MGI:1315204	570	Slc40a1 "solute carrier family	0.302	0.317	0.256	2.4e-19
TAIR|locus:2057222	524	IREG1 "AT2G38460" [Arabidopsis	0.306	0.349	0.288	2.9e-19
UNIPROTKB|F1RXV2	575	Ssc.90898 "Uncharacterized pro	0.302	0.314	0.240	6.3e-17
DICTYBASE|DDB_G0278675	583	DDB_G0278675 [Dictyostelium di	0.339	0.348	0.246	9.4e-17
UNIPROTKB|A0JNB7	574	SLC40A1 "Uncharacterized prote	0.302	0.315	0.229	3.8e-16

TAIR|locus:2148523 IREG3 "iron-regulated protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1986 (704.2 bits), Expect = 2.6e-205, P = 2.6e-205
 Identities = 413/605 (68%), Positives = 478/605 (79%)

Query:     1 MATALAISQPVSFN-LFNVSAGKASALSQQPPSRIRY-RLSSRRWLNL-DSISASHR--- 54
             ++ AL    P SF+ LF+    ++  LS    S +RY R  S RWL+L  S S S R   
Sbjct:     3 VSMALVRHSP-SFDFLFHFPVDRSRFLSPVAFSSVRYHRFHSCRWLSLRSSPSCSRRLNS 61

Query:    55 FVSRCSITNTEVQLDHVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTL 114
             F SRCSITNT+V  + V  DDE+ ED+ T   +  + +V L++  + +       +SLTL
Sbjct:    62 FSSRCSITNTDVCHEFVTTDDEIHEDLLTPIEDHSIPIVHLDTN-ISVT------ESLTL 114

Query:   115 LTEGTFVDSLLTTIPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAI 174
             LTE T+VD++LT +PVLSEEEQ  +AATPAHPEGLY LYA CL GNLVEQLWNFAWPSAI
Sbjct:   115 LTECTYVDTVLTALPVLSEEEQTVIAATPAHPEGLYVLYASCLVGNLVEQLWNFAWPSAI 174

Query:   175 ALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMII 234
             A+L+PSLLPVAVMGF +KL +I GGP+VGK MD+SPR+P YI LN +QAAAQ+LSA MII
Sbjct:   175 AMLYPSLLPVAVMGFVTKLAIIAGGPVVGKFMDYSPRVPTYISLNVIQAAAQVLSAGMII 234

Query:   235 HAHTVIPTS-SSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKA 293
             HA+TV  TS SS+LL PWFF L+ AGA++ L G+A GVA+ERDW VLLAGINRPIALA+A
Sbjct:   235 HAYTVPSTSASSILLQPWFFALLFAGAIDSLCGIASGVAIERDWVVLLAGINRPIALAQA 294

Query:   294 NAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGV 353
             NAVL+RIDLLCEIAG  LFGILLSKY+PVTCLKFAA L++ SLP M  L W TNK SSGV
Sbjct:   295 NAVLHRIDLLCEIAGTMLFGILLSKYDPVTCLKFAATLMVGSLPTMTALIWLTNKFSSGV 354

Query:   354 LDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVV 413
             LDR KCS + C  S EG   + D+I D+G+E IKLGWKEY+QQPVLPASLAYVLL  N+V
Sbjct:   355 LDRPKCSLNSC--SAEGSRTNTDSIFDIGMETIKLGWKEYIQQPVLPASLAYVLLYFNIV 412

Query:   414 LTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQA 473
             LTPGSLMTAFLTQR +NPS+IGGFSGLCA MGVAATFLSA LV+R+GILKAGA GL FQA
Sbjct:   413 LTPGSLMTAFLTQRCVNPSVIGGFSGLCAVMGVAATFLSANLVKRVGILKAGAVGLFFQA 472

Query:   474 SLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGT 533
             SLLA+AVAVY S SLS ++PL FFL +IVLSRLGHMSY +VGAQILQTGIPSSKANLIG 
Sbjct:   473 SLLAVAVAVYCSSSLSHKSPLFFFLSMIVLSRLGHMSYGVVGAQILQTGIPSSKANLIGA 532

Query:   534 TEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFS 593
             TEISVASL ES+MLGVAI AND SHFGFLA LSLLSVV A+ +FC  L NPTDEQR LFS
Sbjct:   533 TEISVASLAESLMLGVAIAANDASHFGFLAVLSLLSVVAASLIFCRLLRNPTDEQRRLFS 592

Query:   594 FDPQS 598
             FDP S
Sbjct:   593 FDPLS 597

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005215 "transporter activity" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

ASPGD|ASPL0000000841 AN6845 [Emericella nidulans (taxid:162425)]

 Score = 297 (109.6 bits), Expect = 9.9e-24, P = 9.9e-24
 Identities = 119/458 (25%), Positives = 204/458 (44%)

Query:   138 ALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILI 196
             A +++PA    L  LY          +++ F     +A + P +LL  +V      L  +
Sbjct:    11 APSSSPASNRVLLRLYTSHFLSTWNSRMFEFGAVVFLASIFPGTLLYASVYALVRSLFAV 70

Query:   197 VGGPLVGKLMDHSPRIPAY---ICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFF 253
             +    +G L+D + R+ A    I    +  A   +   +++ +    P   S LL   F 
Sbjct:    71 LFSSWLGSLVDRTDRLSAIRHSIIWQRIPVAVSCVCLGLLLRSP---PGHLSRLL---FI 124

Query:   254 VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFG 313
              LVL   VE+L      V+VERDWAV+++     ++    NA + RIDL C++       
Sbjct:   125 ALVLLAGVEKLAATVNTVSVERDWAVVISE-TLLVSRKDLNASMRRIDLFCKLVAP---- 179

Query:   314 ILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNK-ISSGV--LDRAKCSQSCCRTSNEG 370
             +++S  + +   K A   ++     ++++ +F    +   V  LDR+   Q+     +E 
Sbjct:   180 VVVSLMDGLLSTKVAIWAVLGVNVTVVLVEYFAIAGVYHSVPQLDRSHERQAADDEEDEQ 239

Query:   371 -PVPD--ADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQR 427
              P+ +  A NI    I      W+EY+ Q V  AS A  LL L V L+ G  M  FL   
Sbjct:   240 QPLEEHLAQNIFAQYIRRTVAPWREYVGQSVFLASFALSLLYLTV-LSFGPTMVTFLLHS 298

Query:   428 GLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGS 487
             G +   +           ++ T+++  L+ R+G +++G   L +Q   LA AVA +   +
Sbjct:   299 GFSSLDVSAMRIGAVLTEISGTWMAPLLMDRIGPIRSGLWFLNWQFGTLAAAVAAF---A 355

Query:   488 LSQQNPLLFFLCLIV---LSRLGHMSYDIVGAQILQTGI-PSSKANLIGTTEISVASLVE 543
              +   P L   CLI    LSRLG   +D+    ++Q  I PSS+A     TE+++ S+ E
Sbjct:   356 FASDRPRLVAGCLITGVALSRLGLWGFDLSVQFLVQENIDPSSRARF-SATEMALQSVFE 414

Query:   544 SVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWL 581
              +     I   D   F +   +S  ++  AA  F  ++
Sbjct:   415 MISFATTIFFADPDQFKYPVYISYGAIALAAVCFAAYV 452

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2142649 IREG2 "iron regulated 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
 Identities = 50/182 (27%), Positives = 89/182 (48%)

Query:   390 WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAAT 449
             W+ Y+ Q ++   ++  LL   V L+ G+LMTA L  +G+   IIG   G+ A +G+AAT
Sbjct:   302 WRNYLNQEIVLPGVSLALLFFTV-LSFGTLMTATLEWKGIPTYIIGIGRGISAGVGLAAT 360

Query:   450 FLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCL-IVLSRLGH 508
              L   +  R+  L+ G      Q + L + V   W   + ++    + L   +  SRLG 
Sbjct:   361 VLYPLMQSRISPLRTGVWSFWSQWTCLLVCVGSIW---VEKEKIASYMLMAGVAASRLGL 417

Query:   509 MSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLL 568
               +D+   Q +Q  +P S   ++G  + S+ S ++ +   + II ++   F  L  +S  
Sbjct:   418 WMFDLAVIQQMQDLVPESDRCVVGGVQNSLQSALDLMANLLGIIVSNPKDFWMLTLISFA 477

Query:   569 SV 570
             +V
Sbjct:   478 TV 479

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015099 "nickel cation transmembrane transporter activity" evidence=IGI

GO:0006824 "cobalt ion transport" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA;IMP

GO:0015087 "cobalt ion transmembrane transporter activity" evidence=IMP

GO:0015675 "nickel cation transport" evidence=IMP

GO:0055068 "cobalt ion homeostasis" evidence=IMP

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|Q9NP59 SLC40A1 "Solute carrier family 40 member 1" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
 Identities = 48/187 (25%), Positives = 88/187 (47%)

Query:   163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
             +++W+FA    +  L+  SLL  AV G      ++V G ++G  +D + R+        V
Sbjct:    39 DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVV 98

Query:   222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
             Q  + +L   ++    +H H ++      +L   + +++    +  L   A  + ++RDW
Sbjct:    99 QNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYILIITIANIANLASTATAITIQRDW 158

Query:   278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
              V++AG +R   LA  NA + RID L  I      G +++   PV    F +G  + S+ 
Sbjct:   159 IVVVAGEDRS-KLANMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMC 217

Query:   338 VMIILTW 344
             V  +L W
Sbjct:   218 VEYVLLW 224

GO:0002260 "lymphocyte homeostasis" evidence=IEA

GO:0003158 "endothelium development" evidence=IEA

GO:0005771 "multivesicular body" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IEA

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0006879 "cellular iron ion homeostasis" evidence=IMP;TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0005381 "iron ion transmembrane transporter activity" evidence=IMP

GO:0034755 "iron ion transmembrane transport" evidence=IMP

UNIPROTKB|F1NWJ7 ORMDL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 5.9e-20, Sum P(3) = 5.9e-20
 Identities = 52/188 (27%), Positives = 90/188 (47%)

Query:   163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
             +++W+FA    +  L+  SLL  AV G      +++ G ++G  +D + R+        V
Sbjct:    40 DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNSRLKVAQTSLVV 99

Query:   222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWF----FVLVLAGA-VERLTGVALGVAVERD 276
             Q A+ +L   +I+    +  T    L H W     ++LV+  A +  L   A  + ++RD
Sbjct:   100 QNASVIL-CGIILMIIFLFKTQLLTLYHGWLLTMCYILVITIANIANLASTATAITIQRD 158

Query:   277 WAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSL 336
             W V++AG +R   LA  NA + RID L  I      G +++   P+    F +G  + S+
Sbjct:   159 WIVVVAGEDRS-KLADMNATIRRIDQLTNILAPMAVGQIMTFGSPMIGCGFISGWNLMSM 217

Query:   337 PVMIILTW 344
              V  +L W
Sbjct:   218 CVEYLLLW 225

GO:0016021 "integral to membrane" evidence=IEA

GO:0002260 "lymphocyte homeostasis" evidence=IEA

GO:0003158 "endothelium development" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0005771 "multivesicular body" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IEA

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IEA

MGI|MGI:1315204 Slc40a1 "solute carrier family 40 (iron-regulated transporter), member 1" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 2.4e-19, Sum P(3) = 2.4e-19
 Identities = 48/187 (25%), Positives = 87/187 (46%)

Query:   163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
             +++W+FA    +  L+  SLL  AV G      ++V G ++G  +D + R+        V
Sbjct:    39 DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVV 98

Query:   222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
             Q  + +L   ++    +H + ++      +L   + +++    +  L   A  + ++RDW
Sbjct:    99 QNVSVILCGIILMMVFLHKNELLTMYHGWVLTVCYILIITIANIANLASTATAITIQRDW 158

Query:   278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
              V++AG NR   LA  NA + RID L  I      G +++   PV    F +G  + S+ 
Sbjct:   159 IVVVAGENRS-RLADMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMC 217

Query:   338 VMIILTW 344
             V   L W
Sbjct:   218 VEYFLLW 224

GO:0002260 "lymphocyte homeostasis" evidence=IMP

GO:0003158 "endothelium development" evidence=IMP

GO:0005381 "iron ion transmembrane transporter activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005771 "multivesicular body" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006826 "iron ion transport" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=ISO

GO:0006915 "apoptotic process" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=ISO;IDA

GO:0048536 "spleen development" evidence=IMP

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IMP

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IMP

TAIR|locus:2057222 IREG1 "AT2G38460" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
 Identities = 54/187 (28%), Positives = 88/187 (47%)

Query:   390 WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAAT 449
             W+ Y  Q V+   ++  LL   V L+ G+LMTA L   G+   IIG   G+ A++G+AAT
Sbjct:   306 WRIYFNQEVVLPGVSLALLFFTV-LSFGTLMTATLQWEGIPTYIIGIGRGISATVGLAAT 364

Query:   450 FLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHM 509
              +   +  RL  L+ G      Q S L + V   W       + +L  +  +  SRLG  
Sbjct:   365 LVYPLMQSRLSTLRTGLWSFWSQWSCLLVCVGSIWVKKDKIASYML--MAGVAASRLGLW 422

Query:   510 SYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLS 569
              +D+   Q +Q  +  S   ++G  + S+ S ++ +   + II ++   F  L  +S  S
Sbjct:   423 MFDLAVIQQMQDLVSESDRCVVGGVQNSLQSALDLMAYLLGIIVSNPKDFWILTLISF-S 481

Query:   570 VVGAAWM 576
              V  A M
Sbjct:   482 TVSLAGM 488

GO:0005215 "transporter activity" evidence=ISS

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006824 "cobalt ion transport" evidence=IMP

UNIPROTKB|F1RXV2 Ssc.90898 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 6.3e-17, Sum P(3) = 6.3e-17
 Identities = 45/187 (24%), Positives = 85/187 (45%)

Query:   163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
             +++W+FA    +  L+  SLL  AV G      ++V G ++G  +D + R+        +
Sbjct:    39 DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVI 98

Query:   222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
             Q  + +L   ++    +H   ++      +L   + +++    +  L   A  + ++RDW
Sbjct:    99 QNVSVILCGIILMMVFLHKDELLTMYHGWVLTSCYILIITIANIANLASTATTITIQRDW 158

Query:   278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
              V++AG +R   LA  NA + RID L  I      G +++    V    F +G  + S+ 
Sbjct:   159 IVVVAGEDRS-KLADMNATIRRIDQLTNILAPMAVGQIMTFGSAVIGCGFISGWNLVSMC 217

Query:   338 VMIILTW 344
             V   L W
Sbjct:   218 VEYFLLW 224

GO:0016021 "integral to membrane" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

DICTYBASE|DDB_G0278675 DDB_G0278675 [Dictyostelium discoideum (taxid:44689)]

 Score = 176 (67.0 bits), Expect = 9.4e-17, Sum P(3) = 9.4e-17
 Identities = 51/207 (24%), Positives = 94/207 (45%)

Query:   389 GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAA 448
             GW  + +Q V    LAY LL   ++    S++TA+L+ +G +   +  F GL A  G+ +
Sbjct:   372 GWIVFQRQSVFLVILAYCLLWFTILSPHDSILTAYLSNQGYSYIELSIFRGLGAIFGLGS 431

Query:   449 TFLSAYLVRRLGILKAGAAGL----IFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLS 504
             T L   L++   + K     L    I +  +  +   ++++ SLS       F+  I+LS
Sbjct:   432 TLLYNRLLKSKNVFKDNMNKLSLFYILEEGIFVLISGLFFASSLSNWVNKYIFMISIILS 491

Query:   505 RLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLAT 564
             R G   ++I     +Q  +  S+  L+   E S+ SL   +M  ++      ++F  L  
Sbjct:   492 RCGLYGFEITEIHYVQRLVHHSERGLVSGVESSLCSLAVLIMFIISSSLQSTNNFFILIW 551

Query:   565 LSLLSVVGAAWMFCHWLLNPTDEQRSL 591
             +S+  V+     F  W L   +  ++L
Sbjct:   552 ISISFVLTGGLSFFVWFLKYNNIDKNL 578

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|A0JNB7 SLC40A1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 3.8e-16, Sum P(3) = 3.8e-16
 Identities = 43/187 (22%), Positives = 85/187 (45%)

Query:   163 EQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221
             +++W+FA    +  L+  SLL  AV G      ++V G ++G  +D + R+        +
Sbjct:    39 DRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVI 98

Query:   222 QAAAQLLSAAMI----IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW 277
             Q  + +L   ++    +H + ++      +L   + +++    +  L   A  + ++RDW
Sbjct:    99 QNVSVILCGIILMMVFLHKNELLTMYHGWVLTSCYILIITIANIANLASTATAITIQRDW 158

Query:   278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLP 337
              V++AG +R   LA  NA + RID L  I      G +++    V    F +   + S+ 
Sbjct:   159 IVVVAGGDRG-RLADMNATIRRIDQLTNILAPMAVGQIMTFGSTVIGCGFISAWNLVSMC 217

Query:   338 VMIILTW 344
             +   L W
Sbjct:   218 MEYFLLW 224

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005771 "multivesicular body" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0003158 "endothelium development" evidence=IEA

GO:0002260 "lymphocyte homeostasis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W4E7	S40A3_ARATH	No assigned EC number	0.6868	0.9665	0.9665	yes	no
Q2QNK7	S40A2_ORYSJ	No assigned EC number	0.5912	0.8846	0.8950	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	598
pfam06963	432	pfam06963, FPN1, Ferroportin1 (FPN1)	1e-126

>gnl|CDD|219242 pfam06963, FPN1, Ferroportin1 (FPN1)

 Score =  377 bits (971), Expect = e-126
 Identities = 150/434 (34%), Positives = 219/434 (50%), Gaps = 11/434 (2%)

Query: 146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGK 204
              L  LY         +++W FA P  +A L+P SLL  AV G    L  +V GP+VG+
Sbjct: 1   SSALIRLYVSHFLSTWGDRMWEFAVPLFMAELYPGSLLLAAVYGLVESLSALVLGPIVGQ 60

Query: 205 LMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSS--SMLLHPWFFVLVLAGAVE 262
           L+D  PR+ A      +Q  +  +S A+ I    V+   S  S LL P F V VL  AV 
Sbjct: 61  LVDRLPRLKAIRLSLLLQNLSVAVSGALFIALFVVLSLLSQASPLLIPLFAVTVLLAAVA 120

Query: 263 RLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPV 322
           +L   A  VA+ERDW V+++G   P+ LAK NA L RIDL C++    L G+LLS     
Sbjct: 121 KLASTANTVAIERDWVVVISG-GLPVVLAKMNATLRRIDLFCKLLAPLLVGLLLSFVSLR 179

Query: 323 TCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPV-----PDADN 377
               F     + S+ V   L     K    +  +A+   S    +          P    
Sbjct: 180 AAAGFLLVWNLVSVVVEYFLLASVYKSVPALSRKAEVRTSRDEEAGSELQEPANRPSIVK 239

Query: 378 IVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGF 437
            V   ++  + GW+EY++QPV  AS A  LL   V L+ G+LMT +L  +GL+PS+IGG 
Sbjct: 240 RVKEYVKTQRDGWREYVRQPVFLASFALSLLYFTV-LSFGTLMTTYLLHQGLSPSVIGGM 298

Query: 438 SGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQN-PLLF 496
            G  A  G+A TF   +L +R+G+L+ G   L +Q S LA+AVA  +             
Sbjct: 299 RGGSAVTGLAGTFAYPFLEKRIGLLRTGLWSLWWQLSCLALAVASVFLPGSPMSALSAFL 358

Query: 497 FLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDV 556
               + LSR+G  S+D+   Q++Q G+P S+ N++G  + S+ SL + +   + IIA D 
Sbjct: 359 LFGGVALSRIGLWSFDLAVTQLMQEGVPESERNVVGGVQNSLQSLFDLLKFALTIIAPDP 418

Query: 557 SHFGFLATLSLLSV 570
            HFG+L  +S  +V
Sbjct: 419 EHFGYLVLISYGAV 432

This family represents a conserved region approximately 100 residues long within eukaryotic Ferroportin1 (FPN1), a protein that may play a role in iron export from the cell. This family may represent a number of transmembrane regions in Ferroportin1. Length = 432

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	598
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	100.0
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.91
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.87
PRK05122	399	major facilitator superfamily transporter; Provisi	99.84
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.82
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.81
PRK09874	408	drug efflux system protein MdtG; Provisional	99.81
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.81
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.79
PRK12307	426	putative sialic acid transporter; Provisional	99.79
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.79
TIGR00901	356	2A0125 AmpG-related permease.	99.78
PRK12382	392	putative transporter; Provisional	99.77
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.77
PRK03545	390	putative arabinose transporter; Provisional	99.76
PRK11902	402	ampG muropeptide transporter; Reviewed	99.76
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.76
TIGR00891	405	2A0112 putative sialic acid transporter.	99.75
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.75
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.74
TIGR00893	399	2A0114 d-galactonate transporter.	99.74
PRK10054	395	putative transporter; Provisional	99.73
PRK11043	401	putative transporter; Provisional	99.72
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.71
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.7
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.69
PRK03893	496	putative sialic acid transporter; Provisional	99.69
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.68
PRK10091	382	MFS transport protein AraJ; Provisional	99.68
PRK11663	434	regulatory protein UhpC; Provisional	99.68
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.68
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.68
PRK09528	420	lacY galactoside permease; Reviewed	99.67
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.66
PRK15011	393	sugar efflux transporter B; Provisional	99.66
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.65
PRK10504	471	putative transporter; Provisional	99.64
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.63
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.63
TIGR00895	398	2A0115 benzoate transport.	99.62
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.61
PRK03633	381	putative MFS family transporter protein; Provision	99.6
PRK11010	491	ampG muropeptide transporter; Validated	99.59
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.59
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.57
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.57
PRK09705	393	cynX putative cyanate transporter; Provisional	99.55
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.54
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.52
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.51
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.51
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.5
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.5
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.49
PRK10429	473	melibiose:sodium symporter; Provisional	99.48
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.46
PRK03699	394	putative transporter; Provisional	99.44
PRK09848	448	glucuronide transporter; Provisional	99.43
PRK10133	438	L-fucose transporter; Provisional	99.43
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.39
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.38
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.38
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.38
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.38
PRK15075	434	citrate-proton symporter; Provisional	99.37
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.36
PLN00028	476	nitrate transmembrane transporter; Provisional	99.36
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.35
PRK09669	444	putative symporter YagG; Provisional	99.33
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.32
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.28
PRK09952	438	shikimate transporter; Provisional	99.26
PF13347	428	MFS_2: MFS/sugar transport protein	99.25
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.23
TIGR00898	505	2A0119 cation transport protein.	99.23
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.22
PRK10642	490	proline/glycine betaine transporter; Provisional	99.21
PRK11462	460	putative transporter; Provisional	99.19
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.17
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.13
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.1
COG2211	467	MelB Na+/melibiose symporter and related transport	99.03
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.02
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.01
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.99
KOG2615	451	consensus Permease of the major facilitator superf	98.98
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.91
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.85
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.83
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.8
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.79
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.75
TIGR00805	633	oat sodium-independent organic anion transporter.	98.71
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.7
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.7
KOG0569	485	consensus Permease of the major facilitator superf	98.5
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.4
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.39
PRK10489	417	enterobactin exporter EntS; Provisional	98.37
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.32
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.31
KOG2532	466	consensus Permease of the major facilitator superf	98.29
TIGR00900	365	2A0121 H+ Antiporter protein.	98.26
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.22
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.21
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.17
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.15
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.14
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.13
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.12
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.09
PRK03633	381	putative MFS family transporter protein; Provision	98.08
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.02
TIGR00895	398	2A0115 benzoate transport.	98.01
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.01
PRK12382	392	putative transporter; Provisional	98.0
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.98
KOG2533	495	consensus Permease of the major facilitator superf	97.98
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.95
PRK05122	399	major facilitator superfamily transporter; Provisi	97.93
PRK10091	382	MFS transport protein AraJ; Provisional	97.93
PRK11663	434	regulatory protein UhpC; Provisional	97.93
TIGR00893	399	2A0114 d-galactonate transporter.	97.92
PRK10054	395	putative transporter; Provisional	97.91
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.86
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.86
PRK03545	390	putative arabinose transporter; Provisional	97.83
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.82
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.8
PRK03699	394	putative transporter; Provisional	97.79
TIGR00891	405	2A0112 putative sialic acid transporter.	97.77
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.76
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.74
PRK10504	471	putative transporter; Provisional	97.72
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.72
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.71
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.71
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.67
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.67
PRK09528	420	lacY galactoside permease; Reviewed	97.67
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.66
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.64
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.6
PRK09705	393	cynX putative cyanate transporter; Provisional	97.6
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.59
PRK15011	393	sugar efflux transporter B; Provisional	97.58
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.57
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.57
PRK03893	496	putative sialic acid transporter; Provisional	97.56
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.52
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.52
PRK12307	426	putative sialic acid transporter; Provisional	97.52
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.51
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.51
PRK11043	401	putative transporter; Provisional	97.51
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.49
PRK11902	402	ampG muropeptide transporter; Reviewed	97.47
PRK09874	408	drug efflux system protein MdtG; Provisional	97.46
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.44
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.43
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.42
PRK10133	438	L-fucose transporter; Provisional	97.4
TIGR00901	356	2A0125 AmpG-related permease.	97.39
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.36
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.36
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.34
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.32
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.29
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.27
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.26
PLN00028	476	nitrate transmembrane transporter; Provisional	97.26
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.17
PF13347	428	MFS_2: MFS/sugar transport protein	97.16
PRK11010	491	ampG muropeptide transporter; Validated	97.16
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.11
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.11
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.08
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.04
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.03
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.01
PRK09669	444	putative symporter YagG; Provisional	96.98
PRK09848	448	glucuronide transporter; Provisional	96.97
KOG0254	513	consensus Predicted transporter (major facilitator	96.96
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	96.91
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.88
PRK10406	432	alpha-ketoglutarate transporter; Provisional	96.81
PRK09952	438	shikimate transporter; Provisional	96.79
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.75
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.73
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.71
TIGR00898	505	2A0119 cation transport protein.	96.7
PTZ00207	591	hypothetical protein; Provisional	96.65
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.63
PRK10642	490	proline/glycine betaine transporter; Provisional	96.54
PRK15075	434	citrate-proton symporter; Provisional	96.54
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.52
PTZ00207	591	hypothetical protein; Provisional	96.48
KOG0569	485	consensus Permease of the major facilitator superf	96.48
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.24
PRK10429	473	melibiose:sodium symporter; Provisional	96.01
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	95.97
KOG2563	480	consensus Permease of the major facilitator superf	95.7
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.62
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.53
TIGR00805	633	oat sodium-independent organic anion transporter.	95.49
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.42
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	95.38
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.34
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	95.25
KOG0254	513	consensus Predicted transporter (major facilitator	95.21
KOG2532	466	consensus Permease of the major facilitator superf	94.98
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	94.81
COG0477	338	ProP Permeases of the major facilitator superfamil	94.77
PF12832	77	MFS_1_like: MFS_1 like family	94.72
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	94.7
PRK11462	460	putative transporter; Provisional	94.58
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	94.45
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	94.24
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	93.61
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	93.53
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	93.28
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	93.18
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	93.01
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	92.48
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	92.47
KOG3626	735	consensus Organic anion transporter [Secondary met	91.98
KOG1330	493	consensus Sugar transporter/spinster transmembrane	91.85
TIGR00788	468	fbt folate/biopterin transporter. The only functio	90.95
PF12832	77	MFS_1_like: MFS_1 like family	90.63
COG2270	438	Permeases of the major facilitator superfamily [Ge	89.64
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	88.67
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	87.92
PRK03612	521	spermidine synthase; Provisional	87.42
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	87.08
KOG3764	464	consensus Vesicular amine transporter [Intracellul	86.77
COG2211	467	MelB Na+/melibiose symporter and related transport	86.6
KOG3762	618	consensus Predicted transporter [General function	86.44
KOG3810	433	consensus Micronutrient transporters (folate trans	85.81
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	83.86
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	83.74
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	83.62
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	83.28
KOG2615	451	consensus Permease of the major facilitator superf	83.09
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	81.21
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	80.64

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=100.00  E-value=8.2e-74  Score=620.05  Aligned_cols=419  Identities=34%  Similarity=0.546  Sum_probs=360.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       147 r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      |..++||++|++|+||||+|+||+|+++..++| |++++++|++++.+..++|||.+|.|+||.||+|+++.+.++|++.
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS   81 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence            457899999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccCC--ccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTS--SSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~--~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~  303 (598)
                      ++++|+++...+......  +.+....+++++.++++++++++.++++++|||||++|+++ ++++|+++|++|||||++
T Consensus        82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~-~~~~La~~NA~mRRIDL~  160 (432)
T PF06963_consen   82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGG-DPGALARMNATMRRIDLF  160 (432)
T ss_pred             HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCC-ChhhHHHHHHHHHHHHHH
Confidence            999998755444332211  13455678999999999999999999999999999999965 467999999999999999


Q ss_pred             HHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccccccccccccCCCCCC------CCCCC
Q 007555          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISS--GVLDRAKCSQSCCRTSNEG------PVPDA  375 (598)
Q Consensus       304 ~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~--~~l~~~~~~~~~~~~~~~~------~~~~~  375 (598)
                      ||++||.+.|.++++.++..++.+.++.|++|++.+   ++++.++|+  |.+++++++++.+.+.+++      ..+..
T Consensus       161 ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vE---y~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (432)
T PF06963_consen  161 CKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVE---YFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSI  237 (432)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhChHhcCCCCCccccccccccccccccchhhH
Confidence            999999999999999998888888877776666555   467788863  4444433322211111000      00011


Q ss_pred             ccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          376 DNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYL  455 (598)
Q Consensus       376 ~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l  455 (598)
                      .+..++.+++.++||+.|++||+++++++++++|+|| ++|+++|++|++++|+++..+|.+||.|++.|++||+++|++
T Consensus       238 ~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TV-Lsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l  316 (432)
T PF06963_consen  238 LKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTV-LSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWL  316 (432)
T ss_pred             HHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1123345677789999999999999999999999998 689999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc-cchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHH
Q 007555          456 VRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLS-QQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTT  534 (598)
Q Consensus       456 ~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~-~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv  534 (598)
                      +||+|+.|+|+|++++|..|+.+++..+|....+ ...+..++++|+++||+|+|+||+++++++||.||+++||+|+|+
T Consensus       317 ~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gv  396 (432)
T PF06963_consen  317 MKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGV  396 (432)
T ss_pred             HHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHH
Confidence            9999999999999999999999999977754322 345677788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHH
Q 007555          535 EISVASLVESVMLGVAIIANDVSHFGFLATLSLLSV  570 (598)
Q Consensus       535 ~~sl~~~~~ll~~~~~i~~~~~~~f~~l~l~S~~~V  570 (598)
                      |+++|+++|+++++++|++|+|++|++++++|+++|
T Consensus       397 q~sl~~lf~ll~~~~~ii~~~P~~F~~lv~iS~~~V  432 (432)
T PF06963_consen  397 QNSLQSLFELLSFVLTIIFPRPSQFGWLVLISVAAV  432 (432)
T ss_pred             HHHHHHHHHHHHHHHHhccCChHhcChHHHhhheeC
Confidence            999999999999999999999999999999999865

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.9e-54  Score=441.64  Aligned_cols=431  Identities=23%  Similarity=0.338  Sum_probs=354.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      +.+.-..||.|+++++||||+|+|++.+|+..+.| |++.+++|+++.....+++||++|.|+|..+|+|++...-++|+
T Consensus        25 ls~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqN  104 (503)
T KOG2601|consen   25 LSSTVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQN  104 (503)
T ss_pred             ccceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhcc
Confidence            44556789999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc---CCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHH
Q 007555          224 AAQLLSAAMIIHAHTVIP---TSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI  300 (598)
Q Consensus       224 ~~v~ls~~~l~~~~~~~~---~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~i  300 (598)
                      +.+.++++++...+....   .+..+ ....++.+.+.+++.++++.|.++.++|||++++..+++++.++++|+.++++
T Consensus       105 lSv~vagglvi~~l~~~~~~~~t~pv-~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~i  183 (503)
T KOG2601|consen  105 LSVIVAGGLVITLLVHKDLKSATSPV-FTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGI  183 (503)
T ss_pred             HHHHHHHHHHhhheeecchhcccccH-HHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhh
Confidence            998877766544333220   01111 12344555578899999999999999999999997666678999999999999


Q ss_pred             HHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccccccc-----------ccCCC
Q 007555          301 DLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVL--DRAKCSQS-----------CCRTS  367 (598)
Q Consensus       301 d~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l--~~~~~~~~-----------~~~~~  367 (598)
                      |+.+++++|+.-|.++++++......+.   .+|+..+++++++++.++|.+.+  +..+..+.           .|..+
T Consensus       184 Dq~tn~Lapv~tg~Iitfvsl~~~~g~f---~~w~~vsm~~ey~ll~~vy~g~palavs~~~k~~rs~~~q~~~~~~~~s  260 (503)
T KOG2601|consen  184 DQSTNLLAPVITGLIITFVSLRASAGTF---AAWALVSMWVEYWLLISVYIGVPALAVSKGRKNLRSKESQVELRDCQSS  260 (503)
T ss_pred             hhhhhchhhhhhcccceeechhhhhhhh---HHHHHHHHHHHHHHHHHHHhCCcHHhhhcchhhhhhhhheeeeecCCcc
Confidence            9999999999999999999875433322   24666777777788888875433  21111100           01100


Q ss_pred             C-------C---CCCCCCcc---c-hhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhH
Q 007555          368 N-------E---GPVPDADN---I-VDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSI  433 (598)
Q Consensus       368 ~-------~---~~~~~~~~---~-~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~  433 (598)
                      .       +   +..+++..   . .+-..+..+.+|+.|++||++++.+.++++|+++ ++|+.+++.++...|.+-..
T Consensus       261 ~~v~~~~s~~~~~~~~~~~~~~~~l~~~~~~sF~~~w~~y~nq~vvl~g~slallf~tv-l~f~~L~t~~~~~~G~p~~i  339 (503)
T KOG2601|consen  261 FPVAGTHSEGFMTNLASRYGILVILPRFSISSFRSAWRVYFNQEVVLPGVSLALLFFTV-LGFGVLMTATLFWPGSPMYI  339 (503)
T ss_pred             cccccccceeeeccccccCccccccchhhhHHHHhHHHhhccCeeeehhhHHHHHHHHH-HhhheeeeeeeecCCCCcee
Confidence            0       0   00000000   0 0113466789999999999999999999999999 78999999999889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhh
Q 007555          434 IGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDI  513 (598)
Q Consensus       434 iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl  513 (598)
                      +|+.+++.+.-|+.+++.++...+|.++.|++.|..+.|..             . ...+..++++|++.+|+|+|+||+
T Consensus       340 ~gi~~g~Sa~tg~~~tv~~~~~~~~~nl~rtg~ws~~sq~s-------------v-~~isv~ll~agVaaaR~GLW~fDl  405 (503)
T KOG2601|consen  340 IGIGRGISAGTGLAATVHYPLMQSRTNLLRTGLWSFWSQDS-------------V-SKISVYLLFAGVAAARLGLWMFDL  405 (503)
T ss_pred             hhhccCcchhhhhhhhhhcccccCccCCCcceehhhccccc-------------c-hhHHHHHHHHHHHHHHhhHHhccH
Confidence            99999999999999999999999999999999998765532             0 124566778899999999999999


Q ss_pred             hhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcccc
Q 007555          514 VGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFS  593 (598)
Q Consensus       514 ~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~~i~~~~~~~f~~l~l~S~~~V~~a~~l~~~~l~~~~~~~~~l~~  593 (598)
                      .++|++|+.|||++|+.|+|+|+++|+.++++.++++|++|+|.+|+.+.++|+++|.++..+|..++.+.   +.|.+|
T Consensus       406 AVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~ilvIi~pnp~~F~iltliS~~fVs~g~m~y~~~l~q~---~~~~~h  482 (503)
T KOG2601|consen  406 AVTQIMQETVPESERCVVFGVQNSLNSALDLLKDILVIIVPNPKDFGILTLISFSFVSLGHMFYTFYLAQI---RSHNFH  482 (503)
T ss_pred             HHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhEEEEecCccceeeeeeehhhHhhhhhhhhhhhhhhc---cccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999998888776   889999


Q ss_pred             cCCC
Q 007555          594 FDPQ  597 (598)
Q Consensus       594 ~~~~  597 (598)
                      +|+.
T Consensus       483 l~~~  486 (503)
T KOG2601|consen  483 LEKI  486 (503)
T ss_pred             hhcC
Confidence            9875

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=100.00  E-value=3.7e-42  Score=383.37  Aligned_cols=391  Identities=17%  Similarity=0.088  Sum_probs=288.7

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHH
Q 007555          142 TPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (598)
Q Consensus       142 ~~~r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~  221 (598)
                      .|.|||+|+++|+||++|++||.++.+|++|++.++|+|+..+|++.++.++|.++++|++|+++||+||||+|+.+|++
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~   84 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLL   84 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence            57799999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHH
Q 007555          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (598)
Q Consensus       222 q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id  301 (598)
                      +.+..++.+ ++.+   .+    ....+.+++..++.|+...+++++.+..+     |.+|++|   +|.++|+.++...
T Consensus        85 ~~~~~~~L~-~l~~---~~----~~~~~~Ll~~~fl~g~~~a~~~PA~~A~i-----p~lV~~~---~L~~A~al~s~~~  148 (524)
T PF05977_consen   85 RALVALLLA-VLAF---FG----LLSPWLLLILTFLLGIGSAFFNPAWQAII-----PELVPKE---DLPAANALNSISF  148 (524)
T ss_pred             HHHHHHHHH-HHHH---hC----cCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhccHh---hHHHHHHHHHHHH
Confidence            876533322 1122   11    12246678888999999999999998865     4488864   8999999999999


Q ss_pred             HHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhh
Q 007555          302 LLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDV  381 (598)
Q Consensus       302 ~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (598)
                      ++++++||.+||++++.+|+...+.+++    .+++..+   ..+.+.. +    ++++++              ...++
T Consensus       149 niar~iGPalgG~Lva~~G~~~~f~ina----lsfl~~i---~~l~~~~-~----~~~~~~--------------~~~e~  202 (524)
T PF05977_consen  149 NIARIIGPALGGILVAFFGAAAAFLINA----LSFLISI---LALLRWK-P----PPPPSS--------------LPRER  202 (524)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHcc-c----cccccc--------------cchhh
Confidence            9999999999999999998765555443    3333222   2223321 1    111000              01246


Q ss_pred             hHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007555          382 GIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (598)
Q Consensus       382 ~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg  460 (598)
                      ++++++||+||++++|.++..+..+.+++.+...+..+++.+.++ +|.++..||++.++.++|+++|+++.+++.+|++
T Consensus       203 ~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~  282 (524)
T PF05977_consen  203 FFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLS  282 (524)
T ss_pred             hhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            889999999999999998876665555443323455677777774 7999999999999999999999999999999988


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHH
Q 007555          461 ILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVAS  540 (598)
Q Consensus       461 ~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~  540 (598)
                      ..+....+....    ..+...+....     ..++.+..+++.+++....+...++++|+.+|+++||||+|+..++..
T Consensus       283 ~~~lv~~~~~~~----a~~~~~lal~~-----~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~  353 (524)
T PF05977_consen  283 SRRLVLLASLLF----ALALLLLALSP-----SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF  353 (524)
T ss_pred             cchhhHHHHHHH----HHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH
Confidence            766554332211    11111111111     112222233344455566788899999999999999999999999999


Q ss_pred             HHH-HHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007555          541 LVE-SVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLN  583 (598)
Q Consensus       541 ~~~-ll~~~~~i~~~~~~~f~~l~l~S~~~V~~a~~l~~~~l~~  583 (598)
                      +.. +++++.|.+.+..+.-..+.+.+++.+..+.+.+...+++
T Consensus       354 g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~  397 (524)
T PF05977_consen  354 GGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQ  397 (524)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            885 5556668887776666666666655555554444444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.96  E-value=9.9e-26  Score=242.82  Aligned_cols=381  Identities=17%  Similarity=0.081  Sum_probs=245.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       146 ~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      +|+|+.++.|++++.+||.+..++++.++.+++.|...++....+..+|..+++|++|.++||++|||+|+.+++++.+.
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~   81 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLG   81 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHH
Confidence            57899999999999999999999999988777779889999999999999999999999999999999999999876543


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~  305 (598)
                      .+   .+ .+  ..     +     .++.-++.|.......++....+ +|    ++++   +++.++|+.++.....+.
T Consensus        82 ~~---~~-~~--~~-----~-----~~~~r~l~G~~~a~~~pa~~a~i-~~----~~~~---~~~~~a~~~~~~~~~~~~  137 (393)
T PRK11195         82 CL---LM-LF--GI-----H-----PLLAYGLVGIGAAAYSPAKYGIL-TE----LLPG---EKLVKANGWMEGSTIAAI  137 (393)
T ss_pred             HH---HH-HH--HH-----H-----HHHHHHHHHHHHHHHHHHHHHHH-HH----HcCH---HHHHHHHHHHHHHHHHHH
Confidence            11   11 11  11     0     12333456777777777776544 34    5654   489999999999999999


Q ss_pred             HhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHH
Q 007555          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA  385 (598)
Q Consensus       306 i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (598)
                      ++||.++|.++... ....+.    .....+....   +....+  |+.++++++           .+.   .....+++
T Consensus       138 ~~Gp~lgG~l~~~~-~~~~~~----i~~~~~~~~~---~~~~~l--~~~~~~~~~-----------~~~---~~~~~~~~  193 (393)
T PRK11195        138 LLGTVLGGALADPH-AEAALA----VCALIYLLAA---LFNLFI--PRLGARRPG-----------QSW---NPIALLRD  193 (393)
T ss_pred             HHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHH---HHHhcC--CCCcccccc-----------cCC---CHHHHHHH
Confidence            99999999999853 211111    1111111111   111111  211100000           000   01235678


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 007555          386 IKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKA  464 (598)
Q Consensus       386 i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~  464 (598)
                      +++++++++++|.++..+....+++........+++.|+.+ .|+++.++|.+.+..++|+++|++..+++.+|.+..+.
T Consensus       194 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~  273 (393)
T PRK11195        194 FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRV  273 (393)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch
Confidence            88999999999988776544333222212233345556653 79999999999999999999999999999888776554


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCcc-chhHHHHHHHHHHHHH
Q 007555          465 GAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSK-ANLIGTTEISVASLVE  543 (598)
Q Consensus       465 g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~-rGRV~sv~~sl~~~~~  543 (598)
                      ...++.....    ........      ..+.......+.+++...++.+.++.+|+..|+|. +||++|+.+...++..
T Consensus       274 ~~~g~~~~~~----~~~~~~~~------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~  343 (393)
T PRK11195        274 LPAGILMGLV----VLLMALQH------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAM  343 (393)
T ss_pred             HHHHHHHHHH----HHHHHHHh------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHH
Confidence            4433211100    00111111      11111222323344555678889999999888776 8999999999999997


Q ss_pred             HHHHHhhhhccCcchhHHHHHHHHHH-HHHHHHHHHHHhcCC
Q 007555          544 SVMLGVAIIANDVSHFGFLATLSLLS-VVGAAWMFCHWLLNP  584 (598)
Q Consensus       544 ll~~~~~i~~~~~~~f~~l~l~S~~~-V~~a~~l~~~~l~~~  584 (598)
                      +++..+.-.....+-.....+..++. +..+.+.+++|-+|.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK11195        344 LLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALLWRWHRRN  385 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66655522222223333333333333 344455566665543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.94  E-value=2.9e-24  Score=260.01  Aligned_cols=362  Identities=15%  Similarity=0.019  Sum_probs=240.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCh-----hHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIA-LLHPSL-----LPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICL  218 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~-~lt~S~-----l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~  218 (598)
                      |+++|+.+|.+|++|.+||.+..++++.++. .++++.     ...++...+..+|.++++|++|.++||++||++|+..
T Consensus         9 ~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~   88 (1140)
T PRK06814          9 KSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKIL   88 (1140)
T ss_pred             hccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHH
Confidence            7788999999999999999999999887764 555543     6788888899999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHH
Q 007555          219 NTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLN  298 (598)
Q Consensus       219 d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~  298 (598)
                      +.+..+..++.  ++.+  ...    +  .+.+++..++.|..+.++.++....+ +|    +++++   ++.++|+.++
T Consensus        89 ~~~~~~~~~~~--~~~~--~~~----s--~~~l~~~~~l~gi~~a~~~p~~~a~l-~~----~~~~~---~~~~a~~~~~  150 (1140)
T PRK06814         89 KFAEIGIAALA--IYGF--HLN----S--VPLLFAALFLMGIHSALFGPIKYSIL-PD----HLNKD---ELLGANALVE  150 (1140)
T ss_pred             HHHHHHHHHHH--HHHH--HHh----h--HHHHHHHHHHHHHHHHhhchHHHHhh-Hh----hcCcc---ccchhhHHHH
Confidence            76544432211  1111  111    1  35677778888998998888887654 44    55543   8999999999


Q ss_pred             HHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccc
Q 007555          299 RIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNI  378 (598)
Q Consensus       299 ~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  378 (598)
                      ...+++.++||.++|+++...+....+... +   ...+..+   .+..++  +..   ++.++       +.  .   .
T Consensus       151 ~~~~ig~~igp~l~g~l~~~~~~~~~~~~~-~---~~~~~~~---~~~~~~--~~~---~~~~~-------~~--~---~  206 (1140)
T PRK06814        151 AGTFIAILLGTIIGGLATISGNFVILVALL-M---GIAVLGW---LASLFI--PKT---GNAAP-------DL--K---I  206 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHH-H---HHHHHHH---HHHhhC--CCC---CCCCC-------CC--e---e
Confidence            999999999999999999987754433111 1   1111111   111222  111   11000       00  0   0


Q ss_pred             hhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          379 VDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVR  457 (598)
Q Consensus       379 ~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~r  457 (598)
                      ..+.+++.++++++.+++|.++..+....+.+.+...+...++.|+.+ .|.++..+|++.+..++|+++|+++.+++.+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~  286 (1140)
T PRK06814        207 DRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSE  286 (1140)
T ss_pred             ccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            123456788999999999988775544333222213445567778875 7999999999999999999999999999987


Q ss_pred             hhhhhHHHHHHHHH-HHHHHHHHHH---------------HHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 007555          458 RLGILKAGAAGLIF-QASLLAMAVA---------------VYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQT  521 (598)
Q Consensus       458 rlg~~r~g~~~l~~-q~~~L~~~v~---------------~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~  521 (598)
                      +.+..+...++... ....+.++..               .++...     ..+.+..+.++..++..+++++..+++|+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  361 (1140)
T PRK06814        287 GRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR-----HGWRILIDLFGLAAAGGLYIVPLFAALQA  361 (1140)
T ss_pred             CceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc-----ccHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            65543332222111 1111111110               000000     11112222333445566788899999999


Q ss_pred             cCCCccchhHHHHHHHHHHHHH-HHHHHhhhhc
Q 007555          522 GIPSSKANLIGTTEISVASLVE-SVMLGVAIIA  553 (598)
Q Consensus       522 ~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~  553 (598)
                      .+|++++||++|+.+++.++.. +.+.+.+.+.
T Consensus       362 ~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        362 WANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             hCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988875 4444445554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=3.4e-23  Score=223.54  Aligned_cols=380  Identities=13%  Similarity=0.030  Sum_probs=249.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      ++|+|+.++++++++.+|+.+..+++|+++.+.+.|....++......++.++.++++|.++||++||+++..++++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~   94 (417)
T PRK10489         15 THPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGL   94 (417)
T ss_pred             hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHH
Confidence            68899999999999999999999999999999888999999999999999999999999999999999999887765443


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                      .....    ........  .+  .+.+++..++.|....+..++.+..+     +.++++   ++..++|+.......++
T Consensus        95 ~~~~~----~~~~~~~~--~~--~~~l~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~g  158 (417)
T PRK10489         95 GFIGL----ALNAFLPE--PS--LLAIYLLGLWDGFFGSLGVTALLAAT-----PALVGR---ENLMQAGAITMLTVRLG  158 (417)
T ss_pred             HHHHH----HHHHHcCC--Cc--HHHHHHHHHHHHHHHHHHHHHHhhhh-----hhccCH---HHHHHHHHHHHHHHhHH
Confidence            31111    11000110  11  23344555556666666555554433     335554   37899999999999999


Q ss_pred             HHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHH
Q 007555          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (598)
Q Consensus       305 ~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (598)
                      .++||.++|.++...+......+.....+   ...    ....++  |+.   +++++           +    .++..+
T Consensus       159 ~~~g~~l~g~l~~~~~~~~~~~~~~~~~~---~~~----~~~~~l--~~~---~~~~~-----------~----~~~~~~  211 (417)
T PRK10489        159 SVISPALGGLLIAAGGVAWNYGLAAAGTF---ITL----LPLLRL--PAL---PPPPQ-----------P----REHPLR  211 (417)
T ss_pred             HHhHHHHHHHHHHHHhhHHHHHHHHHHHH---HHH----HHHHhC--CCC---CCCCc-----------c----cccchH
Confidence            99999999999887665443333221111   111    122222  111   11000           0    011245


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007555          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (598)
Q Consensus       385 ~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r  463 (598)
                      +.++++++.+++|.++..+.....+... ..+....+.|..+ .|+++...|++.+..++++++|.++.+++.+|.+..+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~  290 (417)
T PRK10489        212 SLLAGFRFLLASPVVGGIALLGGLLTMA-SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL  290 (417)
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHHH-HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch
Confidence            6788999999999877655444332222 2444566678776 8999999999999999999999999999988766544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          464 AGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       464 ~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      ....+...    ..++...+... +  ...  ....+.....++....+....+++|+.+|+++|||++|+.++..++..
T Consensus       291 ~l~~~~~~----~~~~~~~~~~~-~--~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  361 (417)
T PRK10489        291 LMLLSTLG----SFLAVGLFGLM-P--MWI--LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGD  361 (417)
T ss_pred             HHHHHHHH----HHHHHHHHHcc-c--hHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhH
Confidence            43332211    11121111111 1  111  111122223334444566777899999999999999999998887664


Q ss_pred             -HHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHH
Q 007555          544 -SVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMF  577 (598)
Q Consensus       544 -ll~~~~~i~~~~~~~f~~l~l~S~~~V~~a~~l~  577 (598)
                       +.+.+.|.+.+..+......+.+.+.+..+....
T Consensus       362 ~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  396 (417)
T PRK10489        362 AIGAALLGGLGAMMTPVASASASGFGLLIIGVLLL  396 (417)
T ss_pred             hHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence             6667778887776666555555555555544443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.91  E-value=1e-20  Score=197.02  Aligned_cols=358  Identities=15%  Similarity=0.129  Sum_probs=235.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHH
Q 007555          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLL  228 (598)
Q Consensus       149 f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~l  228 (598)
                      |+.++.+++++.+|+.+...++|+|..+.+.|...+++...+..++.++.+|+.|.++||++|||+++.+.++..+... 
T Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~-   79 (365)
T TIGR00900         1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVA-   79 (365)
T ss_pred             CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHH-
Confidence            5678999999999999999999999999877999999999999999999999999999999999999987765433311 


Q ss_pred             HHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhh
Q 007555          229 SAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (598)
Q Consensus       229 s~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~G  308 (598)
                         +..+.....    ....+.+++..++.+.......++....+ .|    +.++   ++..++|+..+....++.++|
T Consensus        80 ---~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~---~~~~~~~~~~~~~~~~g~~~g  144 (365)
T TIGR00900        80 ---VLPFVALLG----GLNIWQVYVLAGILAIAQAFFTPAYQAML-PD----LVPE---EQLTQANSLSQAVRSLFYIVG  144 (365)
T ss_pred             ---HHHHHHHcC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh----cCCH---HHHHHHHhHHHHHHHHHHHHH
Confidence               111211111    00124455666666777776666554432 33    5554   378999999999999999999


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHH
Q 007555          309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKL  388 (598)
Q Consensus       309 P~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e  388 (598)
                      |.++|.+....+......+.....+.+   .+    .+..+..|+.  +++++        +   +   ..++..++.++
T Consensus       145 ~~l~~~l~~~~g~~~~~~~~~~~~~~~---~~----~~~~~~~~~~--~~~~~--------~---~---~~~~~~~~~~~  201 (365)
T TIGR00900       145 PGIGGLMYATLGIKWAIWVDAVGFAIS---AL----LIVSVRIPEL--AASEI--------Q---A---LSNAVLRDTRE  201 (365)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHH---HH----HHHhcccccC--CCccc--------c---c---cchhHHHHHHh
Confidence            999999998777544333322111111   11    1111111111  00000        0   0   01134567788


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHHhhhhhh-HHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007555          389 GWKEYMQQPVLPASLAYVLLCLNVVLTPG-SLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGA  466 (598)
Q Consensus       389 G~~~~~~~pvll~~l~~~lL~~~vll~f~-~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~  466 (598)
                      +++..+++|.++..+....++........ ...+.|..+ .|.++.++|.+.+..++++++|+++.+++.||.+..+...
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  281 (365)
T TIGR00900       202 GIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMT  281 (365)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence            99999999988765544444332212233 445556665 7999999999999999999999999999999998766554


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HH
Q 007555          467 AGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SV  545 (598)
Q Consensus       467 ~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll  545 (598)
                      .+....    ..+........  .  ....+....++..++....+....++.|+.+|+++||++.|+.+++.++.. +.
T Consensus       282 ~~~~~~----~~~~~~~~~~~--~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g  353 (365)
T TIGR00900       282 GAIFVI----GLAILVVGLTP--P--NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLG  353 (365)
T ss_pred             HHHHHH----HHHHHHHHhhc--h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            332211    11111111111  0  011222223333444455677888999999999999999999999998875 44


Q ss_pred             HHHhhhhc
Q 007555          546 MLGVAIIA  553 (598)
Q Consensus       546 ~~~~~i~~  553 (598)
                      +.+.|.+.
T Consensus       354 ~~~~g~l~  361 (365)
T TIGR00900       354 LILAGPLA  361 (365)
T ss_pred             HHHHHHHH
Confidence            44445543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.87  E-value=7.9e-19  Score=212.22  Aligned_cols=357  Identities=14%  Similarity=0.060  Sum_probs=228.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP---SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~---S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~  221 (598)
                      ++++|+.++.+++++.+++++...++..++....+   +....++...+..+|.++++|++|.++||++||++|+.+.++
T Consensus         7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~   86 (1146)
T PRK08633          7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLF   86 (1146)
T ss_pred             hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHH
Confidence            67899999999999999999999999887755444   566788888999999999999999999999999999988876


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHH
Q 007555          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (598)
Q Consensus       222 q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id  301 (598)
                      ..+..++.    .+.....    +  .+.+++..++.|....++.++....+ .|    +++++   ++.++|+..+...
T Consensus        87 ~~~~~~~~----~~~~~~~----~--~~~l~~~r~l~G~~~~~~~~~~~~~i-~~----~~~~~---~r~~~~~~~~~~~  148 (1146)
T PRK08633         87 EVGLTLLI----VLAYYLG----W--FWLAFAVTFLLGAQSAIYSPAKYGII-PE----LVGKE---NLSRANGLLEAFT  148 (1146)
T ss_pred             HHHHHHHH----HHHHHHc----c--HHHHHHHHHHHHHHHHhhchHHHhhh-HH----hcCcc---cchhhhhHHHHHH
Confidence            54442221    1111111    1  24556666677777777777664433 34    55543   7899999999999


Q ss_pred             HHHHHhhHHHHHHHHhh--------hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCC
Q 007555          302 LLCEIAGASLFGILLSK--------YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVP  373 (598)
Q Consensus       302 ~~~~i~GP~lgGlL~s~--------~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~  373 (598)
                      .++.++||+++|.+...        .+..........  +...+..+   .+...+  ++.++.++.+        .+. 
T Consensus       149 ~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~--~~~~~~~~~~--------~~~-  212 (1146)
T PRK08633        149 IVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL--LAVAVLGL---IFAYRL--PKVPAAAPEV--------FDK-  212 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH--HHHHHHHH---HHHhcC--cCCCCCCccc--------ccc-
Confidence            99999999999999875        221111111111  11111111   111111  2111100000        000 


Q ss_pred             CCccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChh-HHHHHHHHHHHHHHHHHHH
Q 007555          374 DADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPS-IIGGFSGLCASMGVAATFL  451 (598)
Q Consensus       374 ~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~-~iG~~~g~gavgGLlGtl~  451 (598)
                      .    .....++.++++++.+++|.++..+....+++.....+...++.|+. ..|+++. ..|++.+..++++++|+++
T Consensus       213 ~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~  288 (1146)
T PRK08633        213 K----KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLL  288 (1146)
T ss_pred             c----ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            0    01234567788999999998776544433332221234445666766 4799998 9999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchh
Q 007555          452 SAYLVRRLGILKAGAAGLIFQASLLAMAVAVY-WSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANL  530 (598)
Q Consensus       452 ~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~-~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGR  530 (598)
                      .+++.+|.+..+...++....    .++...+ +..+      .+.++.+.++.+++..++....++++|+.+|++.||+
T Consensus       289 ~g~l~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~  358 (1146)
T PRK08633        289 AGRLSGRHIELGLVPLGALGL----ALSLFLLPTAPS------LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGK  358 (1146)
T ss_pred             HHHHhCCceEccchhHHHHHH----HHHHHHHHHhhh------HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhh
Confidence            999999987655443322211    1111111 1111      1111122233334444567788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 007555          531 IGTTEISVASLVESVMLGV  549 (598)
Q Consensus       531 V~sv~~sl~~~~~ll~~~~  549 (598)
                      ++|+.+++.++...++..+
T Consensus       359 ~~~~~~~~~~lg~~~~~~~  377 (1146)
T PRK08633        359 VLAANNFLQNVGMLLFLAL  377 (1146)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            9999998888775444333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.84  E-value=4e-17  Score=174.71  Aligned_cols=353  Identities=13%  Similarity=0.016  Sum_probs=207.4

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHH
Q 007555          142 TPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (598)
Q Consensus       142 ~~~r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~  220 (598)
                      .+..++++..+.++++++.+|..+....+|+++.+.++ |...+++...+..++..+.+|+.|.++||++|||+++.+++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~   89 (399)
T PRK05122         10 GLRLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLC   89 (399)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHH
Confidence            34456789999999999999999999999999988888 99999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHH
Q 007555          221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI  300 (598)
Q Consensus       221 ~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~i  300 (598)
                      +..+...   .+ ........ ......+.+++.-++.|+......++....+ .|    ..++   ++..++++.....
T Consensus        90 ~~~~~~~---~~-~~~~~~~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~-~~----~~~~---~~r~~~~~~~~~~  156 (399)
T PRK05122         90 GCALSGL---LY-LLAGLLAA-WPVLSLLLLLLGRLLLGIGESLAGTGSILWG-IG----RVGA---LHTGRVISWNGIA  156 (399)
T ss_pred             HHHHHHH---HH-HHhhhhhc-cchhHHHHHHHHHHHHHhhHHhhcchHHHHH-Hh----hcCh---hhhccchhhhhhh
Confidence            5433211   11 11111100 0000112344445566776666665554322 12    3443   3678999999888


Q ss_pred             HHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchh
Q 007555          301 DLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVD  380 (598)
Q Consensus       301 d~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (598)
                      ...+.++||.++|.+....|......+..   ...+...    +...+  .|  +. ++.+           ++    ..
T Consensus       157 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~---~~~~~~~----~~~~~--~~--~~-~~~~-----------~~----~~  209 (399)
T PRK05122        157 TYGALAIGAPLGVLLYHWGGLAGLGLLIM---LLALLGL----LLARP--RP--AV-PPVK-----------GE----RL  209 (399)
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHHHH---HHHHHHH----HHHhc--CC--CC-CCCC-----------cc----ch
Confidence            88999999999999998777433211111   1111100    11111  11  10 0000           00    01


Q ss_pred             hhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007555          381 VGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (598)
Q Consensus       381 ~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg  460 (598)
                          +.++.++.+++..     ....+..+.. ......++.|..+.|++  ..+...+..++++++|.+..+++.+|+|
T Consensus       210 ----~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~  277 (399)
T PRK05122        210 ----PFRRVLGRVWPYG-----MGLALASIGF-GTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLG  277 (399)
T ss_pred             ----hHHHHHHHHHHHH-----HHHHHHHHHH-HHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                1222222222211     1111111111 12233455566666764  3455567778888899999999999998


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHH
Q 007555          461 ILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVAS  540 (598)
Q Consensus       461 ~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~  540 (598)
                      ..+....+....    ..+........  + ...+  ..+.++..++............++.+|+++|||+.|+.++...
T Consensus       278 ~~~~~~~~~~~~----~~~~~~~~~~~--~-~~~~--~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  348 (399)
T PRK05122        278 GLRVAIVSLLVE----ILGLLLLWLAP--S-PWMA--LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLD  348 (399)
T ss_pred             cHHHHHHHHHHH----HHHHHHHHHhc--c-HHHH--HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            776654433211    11211111111  1 1111  1122223333333334455667788999999999999998877


Q ss_pred             HHH-HHHHHhhhhccC
Q 007555          541 LVE-SVMLGVAIIAND  555 (598)
Q Consensus       541 ~~~-ll~~~~~i~~~~  555 (598)
                      ... +.+.+.+.+.+.
T Consensus       349 ~g~~~~~~~~g~l~~~  364 (399)
T PRK05122        349 LSLGITGPLAGLVASW  364 (399)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            664 455666666544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.82  E-value=1e-16  Score=173.32  Aligned_cols=345  Identities=14%  Similarity=0.019  Sum_probs=212.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHH
Q 007555          150 YALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLL  228 (598)
Q Consensus       150 ~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~l  228 (598)
                      ..++.+.++..+|..+..--+|.++....+ |...+|+...+..++.++++|++|.++||++||++++.+++...+..+ 
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~-   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFA-   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHH-
Confidence            677899999999999988888888888778 999999999999999999999999999999999999988875443311 


Q ss_pred             HHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhh
Q 007555          229 SAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (598)
Q Consensus       229 s~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~G  308 (598)
                           .... ..    +  .+.+++..++.++....+.++.+..+ .|    .+++   ++..++++..+..+.++..+|
T Consensus        92 -----~~~~-~~----~--~~~l~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~---~~~~~a~~~~~~~~~~g~~ig  151 (400)
T PRK11646         92 -----TMAI-AH----E--PWLLWLSCILSGLGGTLFDPPRTALV-IK----LIRP---HQRGRFFSLLMMQDSAGAVIG  151 (400)
T ss_pred             -----HHHH-hc----c--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----hcCH---HHHHHHHHHHHHHHHHHHHHH
Confidence                 1111 11    1  23445555566666666666554433 23    4443   489999999999999999999


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHH
Q 007555          309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKL  388 (598)
Q Consensus       309 P~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e  388 (598)
                      |.++|.+. ..+......+.....+..   .+    ..... .|+   +++.+            .        .++.++
T Consensus       152 ~~l~g~l~-~~g~~~~f~~~~~~~~~~---~i----~~~~~-~~~---~~~~~------------~--------~~~~~~  199 (400)
T PRK11646        152 ALLGSWLL-QYDFRLVCATGAVLFVLA---AA----FNAWL-LPA---YKLST------------V--------RTPVRE  199 (400)
T ss_pred             HHHHHHHH-HhhHHHHHHHHHHHHHHH---HH----HHHHh-CCc---ccccc------------c--------chhhHH
Confidence            99999998 455443233222111111   11    11111 111   00000            0        113456


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHH
Q 007555          389 GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAY-LVRRLGILKAGAA  467 (598)
Q Consensus       389 G~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~-l~rrlg~~r~g~~  467 (598)
                      +++.++++|.++........++.........++.|+++.+.++..+|.+.+..+++++.+.....+ ..||.+..+....
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  279 (400)
T PRK11646        200 GMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMA  279 (400)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence            788888888776533332222221112223455677776668889999988887777655544444 4456655443332


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHH
Q 007555          468 GLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVM  546 (598)
Q Consensus       468 ~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~  546 (598)
                      +..    +...+...+....   ....+  ....++..+|....+...+++.|+.+|++++|+++|..+....+.. ..+
T Consensus       280 ~~~----~~~~~~~~l~~~~---~~~~~--~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~  350 (400)
T PRK11646        280 GLL----IMSLSMFPIGMVS---NLQQL--FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGY  350 (400)
T ss_pred             HHH----HHHHHHHHHHHhh---hHHHH--HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcc
Confidence            221    1111111111111   11111  1111222234345566778999999999999999999998887775 455


Q ss_pred             HHhhhhccCc
Q 007555          547 LGVAIIANDV  556 (598)
Q Consensus       547 ~~~~i~~~~~  556 (598)
                      .+.|.+.+..
T Consensus       351 ~l~G~l~~~~  360 (400)
T PRK11646        351 IGGGWLFDLG  360 (400)
T ss_pred             cchHHHHHHH
Confidence            6667777664

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.81  E-value=7.1e-16  Score=165.87  Aligned_cols=359  Identities=14%  Similarity=0.009  Sum_probs=212.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHH
Q 007555          152 LYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAA  231 (598)
Q Consensus       152 L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~  231 (598)
                      +..+++++..+..+....+|.+..+..-|....+....+..+...+.++++|.+.||++|||++..+.+.-.+.    +.
T Consensus        18 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~----~~   93 (406)
T PRK15402         18 LVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILT----CL   93 (406)
T ss_pred             HHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH----HH
Confidence            56667777778888998888766554448888898888899999999999999999999999998876542221    11


Q ss_pred             HHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHH
Q 007555          232 MIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASL  311 (598)
Q Consensus       232 ~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~l  311 (598)
                      ...+  ..     +  .+.+++..++.|.......+.....+ .|    ..++   ++..++++.......++.++||.+
T Consensus        94 ~~~~--~~-----~--~~~l~~~~~l~G~~~~~~~~~~~~~i-~~----~~~~---~~~~~~~~~~~~~~~~~~~~g~~i  156 (406)
T PRK15402         94 AILL--AQ-----S--IEQFTLLRFLQGIGLCFIGAVGYAAI-QE----SFEE---ADAIKITALMANVALLAPLLGPLV  156 (406)
T ss_pred             HHHH--Hc-----c--HHHHHHHHHHHHhHhhhHHHHHHHHH-HH----HhCh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  11     1  23344444555555554444443333 23    2333   266788899888888889999999


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHH
Q 007555          312 FGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWK  391 (598)
Q Consensus       312 gGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~  391 (598)
                      ++.+....+......+..+..+..   .+   .....+  |+.   ++.+        +   +     +...++.+++++
T Consensus       157 ~~~l~~~~~w~~~~~~~~~~~~~~---~~---~~~~~~--~~~---~~~~--------~---~-----~~~~~~~~~~~~  209 (406)
T PRK15402        157 GAALIHVLPWRGMFVLFAALAALS---FF---GLWRAM--PET---AGRV--------G---E-----KLSLKELGRDYK  209 (406)
T ss_pred             HHHHHHccCccHHHHHHHHHHHHH---HH---HHHHhC--CCC---Cccc--------c---c-----cccHHHHHHHHH
Confidence            999988777544333322221111   11   011111  211   1000        0   0     011345677888


Q ss_pred             HHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 007555          392 EYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (598)
Q Consensus       392 ~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~  470 (598)
                      ..+++|.++.......+.......+....+.|+. ..|+++.++|.......+++++|.++.+++.+|.+..+....+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~  289 (406)
T PRK15402        210 LVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLW  289 (406)
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            8999997765333322221111233344566665 479999999998888888899999999999999988766544332


Q ss_pred             HHHH-HHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHH
Q 007555          471 FQAS-LLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLG  548 (598)
Q Consensus       471 ~q~~-~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~  548 (598)
                      .... .+..+.......    ....+ +..++++..+|........++..+.. +++++||+++..+..+.+.. +++.+
T Consensus       290 ~~~~g~~~~~~~~~~~~----~~~~~-~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~  363 (406)
T PRK15402        290 PMVAGLLLAALATVISS----HAYLW-LTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIEL  363 (406)
T ss_pred             HHHHHHHHHHHHHHccc----ccHHH-HHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHH
Confidence            2111 111111110101    01111 12222223333333333444445543 55999999999999888775 55566


Q ss_pred             hhhhccCcchhHHHHH
Q 007555          549 VAIIANDVSHFGFLAT  564 (598)
Q Consensus       549 ~~i~~~~~~~f~~l~l  564 (598)
                      .+.+.+..........
T Consensus       364 ~~~l~~~~~~~~~~~~  379 (406)
T PRK15402        364 SKHAYLGGGNGLFNLF  379 (406)
T ss_pred             HHhcccCCchHHHHHH
Confidence            6777777666654444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.81  E-value=3.7e-16  Score=166.94  Aligned_cols=352  Identities=14%  Similarity=0.070  Sum_probs=202.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-----hHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSL-----LPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLN  219 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~-----l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d  219 (598)
                      .+|++..+|.+++++.+++.++...+|.+..+..-|.     ...+....+..+...+.+|+.|.++||++||++++.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   91 (408)
T PRK09874         12 WKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSA   91 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHH
Confidence            4567999999999999999999999999987643242     23577777888899999999999999999999998776


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHH
Q 007555          220 TVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNR  299 (598)
Q Consensus       220 ~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~  299 (598)
                      +...+.    ..+  .....     +  .+.+++..++.+....+... ....+ .|    ..++   ++..++|+....
T Consensus        92 ~~~~~~----~~~--~~~~~-----~--~~~~~~~~~~~g~~~~~~~~-~~~~~-~~----~~~~---~~~~~~~~~~~~  149 (408)
T PRK09874         92 LGMGIV----MVL--MGLAQ-----N--IWQFLILRALLGLLGGFVPN-ANALI-AT----QVPR---NKSGWALGTLST  149 (408)
T ss_pred             HHHHHH----HHH--HHHHh-----h--HHHHHHHHHHHHHhhhhHHh-HHHHH-HH----hcCH---hhhhHHHHHHHH
Confidence            543222    111  11111     1  23344444444444333322 22222 22    3333   367899999999


Q ss_pred             HHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccch
Q 007555          300 IDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIV  379 (598)
Q Consensus       300 id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  379 (598)
                      ...+..++||.++|.+....+......+.....   +.... ..+.  .+  ++.  +++.++          ++     
T Consensus       150 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~-~~~~--~~--~~~--~~~~~~----------~~-----  204 (408)
T PRK09874        150 GGVSGALLGPLAGGLLADSYGLRPVFFITASVL---FLCFL-VTLF--CI--REN--FQPVSK----------KE-----  204 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH---HHHHH-HHHH--Hh--ccC--cccccc----------hh-----
Confidence            999999999999999988766443333222111   11111 1011  11  100  000000          00     


Q ss_pred             hhhHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChh----HHHHHHHHHHHHHHHHHHHHHH
Q 007555          380 DVGIEAIKLGWKEYMQQPVL-PASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPS----IIGGFSGLCASMGVAATFLSAY  454 (598)
Q Consensus       380 ~~~~~~i~eG~~~~~~~pvl-l~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~----~iG~~~g~gavgGLlGtl~~~~  454 (598)
                         ..+.++.++. +++|.+ +..+...+++......+...++.|..+.+.+..    ..|.+.++.+++++++....++
T Consensus       205 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~  280 (408)
T PRK09874        205 ---MLHMREVVTS-LKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGK  280 (408)
T ss_pred             ---hhHHHHHHHh-CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0122344553 445543 333332332222212344556667665433322    3566667777888888889999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHH
Q 007555          455 LVRRLGILKAGAAGLIFQASLLAMAVAV-YWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGT  533 (598)
Q Consensus       455 l~rrlg~~r~g~~~l~~q~~~L~~~v~~-~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~s  533 (598)
                      +.+|+|..+....+.....    .+... ....+   ....   ....++..++...+....+++.|+.+|++.+||+++
T Consensus       281 l~dr~g~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  350 (408)
T PRK09874        281 LGDRIGPEKILITALIFSV----LLLIPMSFVQT---PLQL---GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFS  350 (408)
T ss_pred             HHhccccchhHHHHHHHHH----HHHHHHHHhcc---HHHH---HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeeh
Confidence            9999998776654433221    11111 11111   1111   111122223333455667788899999999999999


Q ss_pred             HHHHHHHHHH-HHHHHhhhhccCcc
Q 007555          534 TEISVASLVE-SVMLGVAIIANDVS  557 (598)
Q Consensus       534 v~~sl~~~~~-ll~~~~~i~~~~~~  557 (598)
                      ..++...+.. ..+.+.|.+.+..+
T Consensus       351 ~~~~~~~~g~~~gp~~~G~l~~~~g  375 (408)
T PRK09874        351 YNQSFRDIGNVTGPLMGAAISANYG  375 (408)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhhcc
Confidence            9999888775 44455566655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.81  E-value=1e-17  Score=173.80  Aligned_cols=345  Identities=17%  Similarity=0.123  Sum_probs=216.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHH
Q 007555          152 LYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSA  230 (598)
Q Consensus       152 L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~  230 (598)
                      |+.+.+++.+++.+...++|+++.+..+ |...+++...+..++..+.+++.|.++||++|||+++.+.++..+.    +
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~----~   76 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG----S   76 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH----H
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH----H
Confidence            5789999999999999999987778888 9999999999999999999999999999999999999888764433    1


Q ss_pred             HHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHH
Q 007555          231 AMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGAS  310 (598)
Q Consensus       231 ~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~  310 (598)
                      .+..+.  .     +  .+.+++..++.|.......++....+ .|    ..+++   +..++++..+....++.++||.
T Consensus        77 ~~~~~~--~-----~--~~~~~~~~~l~g~~~~~~~~~~~~~i-~~----~~~~~---~~~~~~~~~~~~~~~g~~~g~~  139 (352)
T PF07690_consen   77 LLLAFA--S-----N--FWLLLIARFLLGIGSGFFSPASNALI-AD----WFPPE---ERGRAFGILSAGFSLGSILGPL  139 (352)
T ss_dssp             HHHHHH--C-----C--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----CCCTC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhh--h-----h--HHHHhhhccccccccccccccccccc-cc----cchhh---hhhhccccccchhhhhhhcccc
Confidence            111121  1     1  23455556677777777777665544 34    44443   7889999999999999999999


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHH
Q 007555          311 LFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGW  390 (598)
Q Consensus       311 lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~  390 (598)
                      ++|.+....+......+.....+...+      ........+  +++++. +       .+.++.    +...++.++++
T Consensus       140 l~~~l~~~~~~~~~~~~~~~~~~~~~i------l~~~~~~~~--~~~~~~-~-------~~~~~~----~~~~~~~~~~~  199 (352)
T PF07690_consen  140 LGGFLISYFGWRWAFLISAILSLIAAI------LFILFLPEP--PPPRER-E-------SPKESE----SKKPKPLKPGF  199 (352)
T ss_dssp             HHHHCCCHCHHCCHHHHHHHHHHHHHH------HHHCCC-----STTTT----------SSTTTT------HHHCCCH-C
T ss_pred             hhhhhhhccccccccccccchhhhhhh------hHhhhhhhc--cccccc-c-------cccccc----ccccccccccc
Confidence            999998766654333333222222111      000111011  000000 0       000000    01223334478


Q ss_pred             HHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007555          391 KEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLN-PSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG  468 (598)
Q Consensus       391 ~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s-~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~  468 (598)
                      +.++++|.++..+....+++.....+....+.|+. ..|++ +...|.+.+..+++++++.++.+++.+|++..+.....
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (352)
T PF07690_consen  200 KSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIA  279 (352)
T ss_dssp             THHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            88888886652222222222121234556666744 57888 78999999999999999999999999998875554433


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          469 LIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       469 l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      ....   .............  ....+... ..++.+++....+.....+.|+.+|++++|++.|+.++..++..
T Consensus       280 ~~~~---~~~~~~~~~~~~~--~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~  348 (352)
T PF07690_consen  280 ILLL---ILGALGLLLLPFS--SSPVWLII-ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGG  348 (352)
T ss_dssp             HHHH---HHHHHHHCCSHHH--CHHHHHHH-HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHH---HHHHHHHHHHHHh--hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            2211   1111111111100  00111111 22233344556688999999999999999999999998888764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.79  E-value=2.1e-15  Score=161.43  Aligned_cols=352  Identities=14%  Similarity=0.070  Sum_probs=206.3

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHH
Q 007555          144 AHPEGLYALYACCLAGNLVEQLWNFAWPSA--IALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (598)
Q Consensus       144 ~r~r~f~~L~~gq~lS~~G~~i~~fAlpL~--v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~  220 (598)
                      .|+++++.+++.-.++..+.....+..|.+  +....+ |....+....+..++.++.+++.|.++||++|||+++...+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~   81 (394)
T PRK11652          2 KRQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMS   81 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence            477889999999998888887766665544  334455 99999999999999999999999999999999999887654


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHH
Q 007555          221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI  300 (598)
Q Consensus       221 ~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~i  300 (598)
                      ...+.      .+..... +    +  .+.+++..++.|.......+.... +.+|    ..++   +++.++|+..+..
T Consensus        82 ~~~~~------~~~~~~~-~----~--~~~l~~~~~~~g~~~~~~~~~~~~-~~~~----~~~~---~~~~~~~~~~~~~  140 (394)
T PRK11652         82 IFILG------TLVALFA-H----S--LTVLIAASAIQGLGTGVGGVMART-LPRD----LYEG---TQLRHANSLLNMG  140 (394)
T ss_pred             HHHHH------HHHHHHH-c----c--HHHHHHHHHHHHhhhhHHHHHHHH-HHHH----hcCH---HHHHHHHHHHHHH
Confidence            32211      1111111 1    1  133344444445443333333322 2233    2332   3788999999988


Q ss_pred             HHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchh
Q 007555          301 DLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVD  380 (598)
Q Consensus       301 d~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (598)
                      ..++.++||.++|.+....|......+....   .+...+   .....+  |+   +++.+            + +    
T Consensus       141 ~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~---~~~~~~---~~~~~~--~~---~~~~~------------~-~----  192 (394)
T PRK11652        141 ILVSPLLAPLIGGLLTTLFGWRACYLFLLLL---GAGVTF---SMARWM--PE---TRPAD------------A-R----  192 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccChHHHHHHHHHH---HHHHHH---HHHHhC--Cc---cCccc------------c-c----
Confidence            8999999999999998876644323222111   111111   011111  11   01000            0 0    


Q ss_pred             hhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007555          381 VGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (598)
Q Consensus       381 ~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrl  459 (598)
                        .++.+++++..+++|.++..+......+.....+......|+.+ .|+++.+.|++.....++.++|+++.+++.+|.
T Consensus       193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~  270 (394)
T PRK11652        193 --RTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF  270 (394)
T ss_pred             --hhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              01256778888888877654433333332212334444556665 799999999999999999999999999999988


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHH
Q 007555          460 GILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVA  539 (598)
Q Consensus       460 g~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~  539 (598)
                      +  +....................+....    ..+.+..+.++..+|........++..|+..| +.+|++.++.++..
T Consensus       271 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~  343 (394)
T PRK11652        271 S--TLMWQSVICCLLAGLLMWIPGWFGVM----NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQ  343 (394)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHhccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHH
Confidence            7  22222211110100000011111110    11112222223333444456677777888887 57899999998887


Q ss_pred             HHHH-HHHHHhhhhc
Q 007555          540 SLVE-SVMLGVAIIA  553 (598)
Q Consensus       540 ~~~~-ll~~~~~i~~  553 (598)
                      .+.. +.+.+.+.+.
T Consensus       344 ~lg~~~~~~~~~~~~  358 (394)
T PRK11652        344 NIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHHHHHHHcc
Confidence            6664 4445545443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.79  E-value=5e-16  Score=167.56  Aligned_cols=366  Identities=12%  Similarity=0.052  Sum_probs=216.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      +.+.+...|.+.+...++.....++.|.+.-+..-|....++...+..++.++.+|+.|.++||++||+++..+.+...+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~   95 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSV   95 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            33457788999999888888888888876655544888999999999999999999999999999999999988765333


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                      .    ..+..+..       +  .+.+++.-++.|.......+.....+ .|    ..++   ++..++++.......+.
T Consensus        96 ~----~~~~~~~~-------~--~~~l~~~r~l~G~g~g~~~~~~~~~~-~~----~~~~---~~r~~~~~~~~~~~~lg  154 (426)
T PRK12307         96 G----TGLSGLAS-------G--VIMLTLSRFIVGMGMAGEYACASTYA-VE----SWPK---HLKSKASAFLVSGFGIG  154 (426)
T ss_pred             H----HHHHHHHh-------H--HHHHHHHHHHHHHHHhhHHHHHHHHH-HH----hCCH---hHhhHhhhHHHHHHhHH
Confidence            2    11111211       1  13344444555554443333332222 23    3333   36789999998888888


Q ss_pred             HHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHH
Q 007555          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (598)
Q Consensus       305 ~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (598)
                      .+++|.+++.+....+......+.+    ...+..+   +...+  .|+.++.++.+.  ++   ..  +   ..+..++
T Consensus       155 ~~~~~~l~~~l~~~~~w~~~f~i~~----~~~~~~~---~~~~~--~p~~~~~~~~~~--~~---~~--~---~~~~~~~  215 (426)
T PRK12307        155 NIIAAYFMPSFAEAYGWRAAFFVGL----LPVLLVI---YIRAR--APESKEWEEAKL--SG---KG--K---HSQSAWS  215 (426)
T ss_pred             HHHHHHHHHHHcccCCHHHHHHHHH----HHHHHHH---HHHHH--CCCChHHHHhhh--hc---cc--c---ccccchh
Confidence            8899988888877666543333211    1111111   11111  121110000000  00   00  0   0012234


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhhh---hhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007555          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVL---TPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI  461 (598)
Q Consensus       385 ~i~eG~~~~~~~pvll~~l~~~lL~~~vll---~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~  461 (598)
                      +.+++++..+++|.++..+.....++....   .....++.|+.+.|+++...+...+..++++++|.++.+++.+|++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~  295 (426)
T PRK12307        216 VFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGL  295 (426)
T ss_pred             hhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            445677788888877654433222222111   13345666777889999999999999999999999999999999997


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHH
Q 007555          462 LKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASL  541 (598)
Q Consensus       462 ~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~  541 (598)
                      .+....+......   ........... ..........++....   ..++.....+.|+.+|++.||++.|+..++..+
T Consensus       296 ~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  368 (426)
T PRK12307        296 KKTFSIGLLMSFL---FIFPLFRIPQD-NYLLLGACLFGLMATN---VGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAAT  368 (426)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHccc-cHHHHHHHHHHHHHhc---ccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhH
Confidence            7655544322111   11111111110 0011111111111111   122334556789999999999999999888887


Q ss_pred             HH-HHHHHhhhhccCcc
Q 007555          542 VE-SVMLGVAIIANDVS  557 (598)
Q Consensus       542 ~~-ll~~~~~i~~~~~~  557 (598)
                      .. ..+.+.+.+.+..+
T Consensus       369 ~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        369 SGTFNSMAATWLGITMG  385 (426)
T ss_pred             HHHHHHHHHHHHHHccc
Confidence            75 44455566655544

>TIGR00897 2A0118 polyol permease family

Probab=99.79  E-value=1.9e-15  Score=162.97  Aligned_cols=373  Identities=10%  Similarity=0.002  Sum_probs=215.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      -+|++...|.++++..+++.+...-+|.++.+..-|....+.......+...+.+|+.|.++||++|||++..+.++..+
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~   90 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCV   90 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            46789999999999999999888778888755433999999999999999999999999999999999999888765333


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                      .    ..+... .....  .+  .+.+++.-++.|.......+.....+ .+    ..++   ++..++|+..+....++
T Consensus        91 ~----~~~~~~-~~~~~--~~--~~~l~~~~~i~G~g~~~~~~~~~~~~-~~----~~~~---~~~g~~~g~~~~~~~~g  153 (402)
T TIGR00897        91 G----HAAFIV-FGLGH--AN--YPLILLFYGIRGLGYPLFAYSFLVWV-VY----NTKQ---DNLSSAVGWFWAVYSIG  153 (402)
T ss_pred             H----HHHHHH-HhccC--cc--HHHHHHHHHHHHcchHHHHhHHHHHH-HH----hCCH---HHHHHHHHHHHHHHHHH
Confidence            2    111111 11110  11  12333333333333222222222211 12    3333   47899999999998888


Q ss_pred             H-HhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhH
Q 007555          305 E-IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (598)
Q Consensus       305 ~-i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (598)
                      . +.||.++|.++...|.....+.....   ...... ..+.+.+   +   +++++++       +   +     +.-+
T Consensus       154 ~~~~g~~~~~~l~~~~g~~~~~~~~~~~---~~~~~~-~~~~~~~---~---~~~~~~~-------~---~-----~~~~  208 (402)
T TIGR00897       154 IGVFGSYYSSYAIPAFGEMNTLWSALAF---VLTGGV-IALFSNK---D---IFTPQHM-------Q---T-----REKF  208 (402)
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHHH---HHHHHH-HHHhccC---C---CCCcccc-------c---C-----Ccch
Confidence            6 78999999988766632222221111   011111 0011111   1   1011000       0   0     0113


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007555          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (598)
Q Consensus       384 ~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r  463 (598)
                      ++.+++++..+++|.++...............+....+.|.++.|+++.+.+.+.+...+++++|++..+++.+|++..+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  288 (402)
T TIGR00897       209 SELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN  288 (402)
T ss_pred             hhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence            45667888899999876544332222211123444566788889999999999999999999999999999999998655


Q ss_pred             HHHH-HHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHH
Q 007555          464 AGAA-GLIFQASLLAMAVAVY-WSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASL  541 (598)
Q Consensus       464 ~g~~-~l~~q~~~L~~~v~~~-~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~  541 (598)
                      ...+ +...   +...+.... ...........+..  ..++..++...+ .+..+..++ +++++||++.|+.++...+
T Consensus       289 ~~~~~~~l~---~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~G~~~~~~-~~~~~~~~~-~~~~~~g~~~g~~~~~~~l  361 (402)
T TIGR00897       289 TVRWFGGVG---CGIFTLALYYIPQHFGHSFAVALI--IAIALGIFLAGY-VPLAAVFPT-LAPKHKGAAMSVLNLSAGL  361 (402)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHccCCcHHHHHH--HHHHHHHHHHHH-HHHHHHHHh-hCcchhHHHHHHHHHHHHH
Confidence            4321 1111   111111111 11000001111111  111122222222 334556666 4556899999999988887


Q ss_pred             HH-HHHHHhhhhccCcchhHHHHHHH
Q 007555          542 VE-SVMLGVAIIANDVSHFGFLATLS  566 (598)
Q Consensus       542 ~~-ll~~~~~i~~~~~~~f~~l~l~S  566 (598)
                      .. ..+++.+.+.+...-.....+.+
T Consensus       362 g~~~gp~i~g~l~~~~g~~~~~~~~a  387 (402)
T TIGR00897       362 SAFLAPAIAVLFIGFFGAIGVVWIFA  387 (402)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            75 55566677766544333333333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.78  E-value=1e-15  Score=161.44  Aligned_cols=329  Identities=16%  Similarity=0.032  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccC-----CchHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 007555          164 QLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHS-----PRIPA-YICLNTVQAAAQLLSAAMIIHAH  237 (598)
Q Consensus       164 ~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~-----~Rr~v-mi~~d~~q~~~v~ls~~~l~~~~  237 (598)
                      .+..+++|.+..+.--|..+++.+... .+|..+ +++.|.++||+     +|||. ++.+++...+.    ...+.+  
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~----~~~l~~--   76 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSL----LLILSF--   76 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHH----HHHHHc--
Confidence            356678888877663399999999876 888876 99999999998     57775 56666543222    111111  


Q ss_pred             hhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 007555          238 TVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLS  317 (598)
Q Consensus       238 ~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s  317 (598)
                      .. + ..  ..+.++...++.+......+++.+..     ++..+++   ++..++|+.......+..++||.+++.+..
T Consensus        77 ~~-~-~~--~l~~l~~~~~~~~~~~~~~~~~~~a~-----~~~~~~~---~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~  144 (356)
T TIGR00901        77 LV-P-ST--DLPLLAGLAFLIAFFSATQDIALDAW-----RLEILSD---EELGYGSTIYIVGYRAGMLLSGSLALVLAS  144 (356)
T ss_pred             CC-c-ch--hHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCH---hhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            11 1 11  12344555455566666666666543     3335554   378999999999999999999999999988


Q ss_pred             hhc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHH
Q 007555          318 KYE--------PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLG  389 (598)
Q Consensus       318 ~~~--------~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG  389 (598)
                      ..+        ......+.....   .+ ..   +..... .++.+++++              +.    ++..++.+++
T Consensus       145 ~~g~~~~~~~~wr~~f~i~ai~~---l~-~~---~~~~~~-~~e~~~~~~--------------~~----~~~~~~~~~~  198 (356)
T TIGR00901       145 PEFANTGLITLWGYIFFWTALLI---LP-GL---LVTLFL-AKEPQEDAS--------------VP----KPLTQAVLKP  198 (356)
T ss_pred             hcccccccccccHHHHHHHHHHH---HH-HH---HHHHHh-ccCCCcccc--------------cc----hhHHHHHHHH
Confidence            776        332222221111   11 11   111111 111110000              00    1113456778


Q ss_pred             HHHHhcCCc---hHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHH
Q 007555          390 WKEYMQQPV---LPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCA-SMGVAATFLSAYLVRRLGILKAG  465 (598)
Q Consensus       390 ~~~~~~~pv---ll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~ga-vgGLlGtl~~~~l~rrlg~~r~g  465 (598)
                      ++..+++|.   +...+....++........+.++.|+.+.|+++.++|.+.++.+ +++++|.++.+++.+|+|..+..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l  278 (356)
T TIGR00901       199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL  278 (356)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            888888886   33322222222221123445677788789999999999888655 67889999999999999987765


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccc----chhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHH
Q 007555          466 AAGLIFQASLLAMAVAVYWSGSLSQ----QNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVAS  540 (598)
Q Consensus       466 ~~~l~~q~~~L~~~v~~~~~g~~~~----~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~  540 (598)
                      .++...+...  .....+.......    ....+......++..++....+....+++|+.+|+++|||++|+.+++.+
T Consensus       279 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       279 LLFGIVQALT--NAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHH--HHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            5443322111  1111111100000    00112222233334445557789999999999999999999999988765

>PRK12382 putative transporter; Provisional

Probab=99.77  E-value=4.1e-15  Score=159.05  Aligned_cols=351  Identities=12%  Similarity=0.008  Sum_probs=204.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      .++.+..++.+++++.++..+..=.+|+++.+..+ |..++++...+..++..+.+|+.|.++||++|||+++.+.+...
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~   92 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACG   92 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHH
Confidence            45678899999999999999998899999888778 99999999999999999999999999999999999998876533


Q ss_pred             HHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHH
Q 007555          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (598)
Q Consensus       224 ~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~  303 (598)
                      +..+.   . ........ ......+.+++.-++.|+......++....+ .|    .++++   +..++++..+.....
T Consensus        93 ~~~~~---~-~~~~~~~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~-~~----~~~~~---~r~~a~~~~~~~~~~  159 (392)
T PRK12382         93 LAGLA---Y-LLAAILPV-SAPFKFALLVVGRLILGFGESQLLTGALTWG-LG----LVGPK---HSGKVMSWNGMAMYG  159 (392)
T ss_pred             HHHHH---H-Hhhhcccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh----hCCcc---ccchhhhHHHHHHHH
Confidence            22110   0 01000000 0000123344444556665555554443222 23    44443   688999999998999


Q ss_pred             HHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhH
Q 007555          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (598)
Q Consensus       304 ~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (598)
                      +..+||.++|.+....|......+       .....++..+...+.  +   +.+++ +           +.+   +   
T Consensus       160 g~~~g~~~~~~l~~~~g~~~~~~~-------~~~~~~~~~~~~~~~--~---~~~~~-~-----------~~~---~---  209 (392)
T PRK12382        160 ALAAGAPLGLLLHSHFGFAALALT-------TMVLPLLAWAFNGTV--R---KVPAH-A-----------GER---P---  209 (392)
T ss_pred             HHHHHHHHHHHHHhccChHHHHHH-------HHHHHHHHHHHHHhc--c---CCCCC-c-----------ccC---c---
Confidence            999999999999887764321111       111111110111111  1   10000 0           000   1   


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007555          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (598)
Q Consensus       384 ~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r  463 (598)
                       +.++.++.+++.. +    ...+..+.. .......+.|+.+.|++.  .|......+++++++.+..+++.+|+|..|
T Consensus       210 -~~~~~~~~~~~~~-~----~~~l~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~  280 (392)
T PRK12382        210 -SLWSVVGLIWKPG-L----GLALQGVGF-AVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVK  280 (392)
T ss_pred             -hHHHHHHHHHHhH-H----HHHHHHHHH-hHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence             1223334333321 1    111111111 122334455666667654  455566777888889999999999999876


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          464 AGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       464 ~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      ....+......    +........  +. ..  ...+.++..++............++..|+++||+++|+.++...+..
T Consensus       281 ~~~~~~~~~~~----~~~~~~~~~--~~-~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  351 (392)
T PRK12382        281 VAIVSLLVETV----GLLLLWLAP--TA-WV--ALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY  351 (392)
T ss_pred             ehHHHHHHHHH----HHHHHHHcc--cH-HH--HHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            65544332211    111111111  11 11  11112222233223334556778888999999999999998877664


Q ss_pred             -HHHHHhhhhccCc
Q 007555          544 -SVMLGVAIIANDV  556 (598)
Q Consensus       544 -ll~~~~~i~~~~~  556 (598)
                       +.+.+.+.+.+..
T Consensus       352 ~ig~~~~g~l~~~~  365 (392)
T PRK12382        352 GVSGPLAGMLATSF  365 (392)
T ss_pred             HHHHHHHHHHHHHh
Confidence             5566667665543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.77  E-value=1.8e-14  Score=155.45  Aligned_cols=334  Identities=12%  Similarity=0.048  Sum_probs=197.7

Q ss_pred             HHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHH
Q 007555          175 ALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFF  253 (598)
Q Consensus       175 ~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~v  253 (598)
                      .+..+ |...++....+..+...+.+|+.|.++||++|||+++.+.++..+.    ..  ......     +  .+.+++
T Consensus        47 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~----~~--~~~~~~-----~--~~~l~~  113 (394)
T PRK10213         47 AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLS----CL--LVSFAN-----S--FSLLLI  113 (394)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH----HH--HHHHHC-----h--HHHHHH
Confidence            45566 8899999888889999999999999999999999999988764332    11  111111     1  245556


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHH
Q 007555          254 VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIM  333 (598)
Q Consensus       254 v~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~  333 (598)
                      .-++.|.......+.....+ .|    .+++   ++..++++.......++.++||.+++.+...+|......+...   
T Consensus       114 ~r~l~G~~~g~~~~~~~~~i-~~----~~~~---~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~---  182 (394)
T PRK10213        114 GRACLGLALGGFWAMSASLT-MR----LVPP---RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV---  182 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHH-HH----HcCH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH---
Confidence            55666666665555554433 34    3443   3789999999999999999999999999988776543333221   


Q ss_pred             HHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 007555          334 WSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVV  413 (598)
Q Consensus       334 ~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vl  413 (598)
                      ..++..+   +...++  |+.  +++.             +      ..    .+.++..+++|.++..+....+.+...
T Consensus       183 l~~~~~l---~~~~~~--p~~--~~~~-------------~------~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~  232 (394)
T PRK10213        183 MGVLCIF---WIIKSL--PSL--PGEP-------------S------HQ----KQNTFRLLQRPGVMAGMIAIFMSFAGQ  232 (394)
T ss_pred             HHHHHHH---HHHHHC--CCC--Cccc-------------c------cc----hhHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            1111111   111111  211  0000             0      00    112334567776655433322222211


Q ss_pred             hhhhHH-HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-Hhhcccccc
Q 007555          414 LTPGSL-MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAV-YWSGSLSQQ  491 (598)
Q Consensus       414 l~f~~l-~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~-~~~g~~~~~  491 (598)
                      ..+... .+.|..+.|+++...|......++++++|.++.+++.+|.+. +...+....   ........ .+..+    
T Consensus       233 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~---~~~~~~~l~~~~~~----  304 (394)
T PRK10213        233 FAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLV---LAVSALVLTLWGSD----  304 (394)
T ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHH---HHHHHHHHHHHhhh----
Confidence            122223 344666689999999999999999999999999999998542 222221111   11111111 11111    


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccCcchhHHHHHHHHHHH
Q 007555          492 NPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIANDVSHFGFLATLSLLSV  570 (598)
Q Consensus       492 ~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~~~~f~~l~l~S~~~V  570 (598)
                      ...  .....++..++...++...++.+|+.+| ++++++.+...+..++.. +++.+.|.+.+..+........++..+
T Consensus       305 ~~~--~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~  381 (394)
T PRK10213        305 KIV--ATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML  381 (394)
T ss_pred             HHH--HHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence            111  1112233344555678888889999998 568899988877777664 566666887765544444444444444


Q ss_pred             HHH
Q 007555          571 VGA  573 (598)
Q Consensus       571 ~~a  573 (598)
                      ..+
T Consensus       382 ~~~  384 (394)
T PRK10213        382 LTA  384 (394)
T ss_pred             HHH
Confidence            443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.76  E-value=2.1e-14  Score=153.76  Aligned_cols=344  Identities=12%  Similarity=0.011  Sum_probs=195.7

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007555          162 VEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIP  241 (598)
Q Consensus       162 G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~  241 (598)
                      ++.+..-.+|.+..+..-|....+....+..+...+.+++.|.++||++|||++..+.++-.+    .+.+..+  ..  
T Consensus        24 ~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~----~~~~~~~--~~--   95 (390)
T PRK03545         24 TEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA----SHVLSAL--AW--   95 (390)
T ss_pred             HHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----HHHHHHH--hc--
Confidence            333333335655444333999999999998999999999999999999999999887653222    1111111  11  


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhch
Q 007555          242 TSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEP  321 (598)
Q Consensus       242 ~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~  321 (598)
                         +  .+.+++.-++.|.......+.....+ .|    ..++   ++..++++..+....++..+||.+++.+....|.
T Consensus        96 ---~--~~~l~~~r~~~G~~~~~~~~~~~~~i-~~----~~~~---~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw  162 (390)
T PRK03545         96 ---N--FTVLLISRIGIAFAHAIFWSITASLA-IR----VAPA---GKKAQALSLLATGTALAMVLGLPLGRVIGQYLGW  162 (390)
T ss_pred             ---c--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----hCCh---hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcH
Confidence               1  23445554555655554444433322 23    3443   3788999999999999999999999999988776


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHH
Q 007555          322 VTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPA  401 (598)
Q Consensus       322 ~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~  401 (598)
                      .....+....   +++...    ...+. .|+.   +++             +     ++..    ..++.++++|.++.
T Consensus       163 ~~~f~~~~~~---~~l~~~----~~~~~-~~~~---~~~-------------~-----~~~~----~~~~~~~~~~~~~~  209 (390)
T PRK03545        163 RTTFLAIGGG---ALITLL----LLIKL-LPLL---PSE-------------H-----SGSL----KSLPLLFRRPALVS  209 (390)
T ss_pred             HHHHHHHHHH---HHHHHH----HHHHh-CCCC---CCC-------------C-----cchH----HHHHHHHhCcHHHH
Confidence            5443333221   111111    11111 1110   000             0     0011    12455778887665


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 007555          402 SLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAV  480 (598)
Q Consensus       402 ~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v  480 (598)
                      ......+...........+++|+.+ .|+++...|.+.+..++++++|++..+++.+|.+..+ ...+...    ...+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-~~~~~~~----~~~~~  284 (390)
T PRK03545        210 LYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF-LLIAIAL----LLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-HHHHHHH----HHHHH
Confidence            4333322221111223345666665 6999999999999999999999999999999987533 2222111    11111


Q ss_pred             HHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccCcchh
Q 007555          481 AVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIANDVSHF  559 (598)
Q Consensus       481 ~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~~~~f  559 (598)
                      ........  ....  +....++..++...+....+..+|+..| +.+||++|..+++.++.. .++.+.|.+.+.....
T Consensus       285 ~~l~~~~~--~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~  359 (390)
T PRK03545        285 LLLLPAAN--SEWH--LSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS  359 (390)
T ss_pred             HHHHHHhc--hHHH--HHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence            11111110  1111  1112222223333344556677887766 588999999988877654 5556667776554444


Q ss_pred             HHHHHHHHHH
Q 007555          560 GFLATLSLLS  569 (598)
Q Consensus       560 ~~l~l~S~~~  569 (598)
                      ..........
T Consensus       360 ~~~~~~~~~~  369 (390)
T PRK03545        360 SIGYVGAALA  369 (390)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.76  E-value=1e-14  Score=157.21  Aligned_cols=385  Identities=14%  Similarity=0.062  Sum_probs=218.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccC-----Cch-HHHHHHHHHH
Q 007555          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHS-----PRI-PAYICLNTVQ  222 (598)
Q Consensus       149 f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~-----~Rr-~vmi~~d~~q  222 (598)
                      |..||..|.   +.......++|.|+-+.--|...+|+.... .+| .++.|+.|.++||+     +|| ++++.+++..
T Consensus         4 ~~~l~~~~~---~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~-~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~   78 (402)
T PRK11902          4 MLLLGFASG---LPLALTSGTLQAWMTVEGLDIQTIGFFSLV-GQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGL   78 (402)
T ss_pred             HHHHHHHHh---hhHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHH
Confidence            556666665   456788899999999873399999999665 456 58999999999999     455 5788887654


Q ss_pred             HHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHH
Q 007555          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (598)
Q Consensus       223 ~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~  302 (598)
                      .++    ...+.+   .++ ..+  .+.+++..++.+......+++.+..+     +..+++   ++..++|+.......
T Consensus        79 ~l~----~~~l~~---~~~-~~~--~~~l~~~~~~~~~~~~~~~~~~~al~-----~~~~~~---~~r~~~~~~~~~g~~  140 (402)
T PRK11902         79 AAS----IAAMAF---CPP-HAA--LWPLAGLAVLVAFLSASQDIVFDAYS-----TDVLHP---EERGAGAAVKVLGYR  140 (402)
T ss_pred             HHH----HHHHHh---cCc-cch--HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCh---hhhhHHHHHHHHHHH
Confidence            332    111111   111 111  23445554555666666666665433     224444   378999999999999


Q ss_pred             HHHHhhHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhh
Q 007555          303 LCEIAGASLFGILLSK-YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDV  381 (598)
Q Consensus       303 ~~~i~GP~lgGlL~s~-~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (598)
                      ++.++|+.+++.+.+. .|......+.....   ....+    ....+  +++++++++             +     ++
T Consensus       141 ~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~---l~~~l----~~~~~--~e~~~~~~~-------------~-----~~  193 (402)
T PRK11902        141 LAMLVSGGLALWLADRVLGWGNTYLLMAGLM---LAGAL----TTLWA--PEPEVPARP-------------P-----RS  193 (402)
T ss_pred             HHHHHHhHHHHHHHhcccCHHHHHHHHHHHH---HHHHH----HHHhc--CCCcccccc-------------c-----ch
Confidence            9999999999999884 46544333322211   11111    11111  211111000             0     11


Q ss_pred             hHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 007555          382 GIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLC-ASMGVAATFLSAYLVRRL  459 (598)
Q Consensus       382 ~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~g-avgGLlGtl~~~~l~rrl  459 (598)
                      ..++.+++++.+++||.++..+....++...........++|+. +.|+++..+|++.+.. .+++++|.++.+++.+|+
T Consensus       194 ~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~  273 (402)
T PRK11902        194 LGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL  273 (402)
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            22356788999999998877555444432211122234444444 5899999999998664 456899999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH--HHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHH
Q 007555          460 GILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCL--IVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEIS  537 (598)
Q Consensus       460 g~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~--i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~s  537 (598)
                      |..+....+...+.... ..........  +....++....  .+...++........+.+.|+..|.+.+|+.+++. +
T Consensus       274 g~~~~l~~~~~~~~l~~-l~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  349 (402)
T PRK11902        274 GLYRSLMLFGVLQAVSN-LGYWVLAVTP--KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALA-S  349 (402)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-H
Confidence            98776544332221111 0110001111  01111111111  12334445566888889999999988877655543 3


Q ss_pred             HHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcccccCCC
Q 007555          538 VASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTDEQRSLFSFDPQ  597 (598)
Q Consensus       538 l~~~~~ll~~~~~i~~~~~~~f~~l~l~S~~~V~~a~~l~~~~l~~~~~~~~~l~~~~~~  597 (598)
                      +....  .+.+.|.+.   +.+++.......++.+...+...|  +.   ++|+.+||.+
T Consensus       350 l~~~~--~~~~~G~l~---~~~G~~~~f~~~~~~~~~~~~~~~--~~---~~~~~~~~~~  399 (402)
T PRK11902        350 VGRVY--VGPTSGYLV---EAYGWPGFYLMTVVIALPGLALLW--LM---RGTIGRYEAQ  399 (402)
T ss_pred             HHHHH--HHHHHHHHH---HHhChHHHHHHHHHHHHHHHHHHH--HH---hhhccccccc
Confidence            43332  344445444   445555433333333322222222  11   4456667754

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.76  E-value=1.8e-14  Score=152.51  Aligned_cols=331  Identities=13%  Similarity=0.059  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007555          159 GNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHT  238 (598)
Q Consensus       159 S~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~  238 (598)
                      ..++..++.-.+|.+..+..-|....+....+..++..+.+++.|.++||++||+++..+.++..+.    +.+..+  .
T Consensus         3 ~~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~----~~~~~~--~   76 (377)
T PRK11102          3 MPLAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALA----AVACAL--A   76 (377)
T ss_pred             cchHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHH----HHHHHH--H
Confidence            3466778888888888765449999999999999999999999999999999999998776543322    111111  1


Q ss_pred             hccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 007555          239 VIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSK  318 (598)
Q Consensus       239 ~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~  318 (598)
                      .     +  .+.+++..++.|.......+.....+ .|    ..++   ++..++++.......++.++||.++|.+...
T Consensus        77 ~-----~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  141 (377)
T PRK11102         77 Q-----T--IDQLIYMRFLHGLAAAAASVVINALM-RD----MFPK---EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW  141 (377)
T ss_pred             c-----c--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----hcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1     1  13344444455555554444443322 23    4443   3788999999999999999999999999887


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCc
Q 007555          319 YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPV  398 (598)
Q Consensus       319 ~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pv  398 (598)
                      .+......+.....   .+..+   +....+  ++.  +++++         +  +.     ...++..+.++..+++|.
T Consensus       142 ~~~~~~~~~~~~~~---~~~~~---~~~~~~--~~~--~~~~~---------~--~~-----~~~~~~~~~~~~~~~~~~  195 (377)
T PRK11102        142 FSWHAIFWVLALAA---ILAAA---LVFFFI--PET--LPKER---------R--QP-----FHLRTTIRNFASLFRHKR  195 (377)
T ss_pred             cChHHHHHHHHHHH---HHHHH---HHHHhC--Ccc--Ccccc---------c--CC-----CChHHHHHHHHHHHcChH
Confidence            66443222221111   11111   111111  111  00000         0  00     011223345566777876


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 007555          399 LPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLA  477 (598)
Q Consensus       399 ll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~  477 (598)
                      +...+....+.+.....+....+.|.. ..|+++.+.|.+.+..+++++++.+..+++.+|+|..+....+...+..   
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~---  272 (377)
T PRK11102        196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFI---  272 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH---
Confidence            654333332222211112222233343 4799999999999999999999999999999999987766554432221   


Q ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH
Q 007555          478 MAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV  542 (598)
Q Consensus       478 ~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~  542 (598)
                      .++.....+...  ...+....+......+..........+.|+..| +.+|+++++.+++....
T Consensus       273 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~  334 (377)
T PRK11102        273 MGIWLVVSALLD--LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGI  334 (377)
T ss_pred             HHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHH
Confidence            111111111000  011111111111111222233344566787766 89999999988776544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.75  E-value=3.8e-15  Score=157.80  Aligned_cols=375  Identities=11%  Similarity=0.039  Sum_probs=209.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          144 AHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       144 ~r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      .+.+.+...+.+++.+.++..+..+..|.+..+..-|....+.......+...+.+|+.|.++||++||++++.+.+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~   88 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS   88 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34467888999999999999999999998765544499999999999999999999999999999999999987765432


Q ss_pred             HHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHH
Q 007555          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (598)
Q Consensus       224 ~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~  303 (598)
                      +.    +.+..+  ..     +  .+.+++..++.|.......+.....+ .|    ..++   ++..++++..+....+
T Consensus        89 ~~----~~~~~~--~~-----~--~~~l~~~~~l~G~~~~~~~~~~~~~i-~~----~~~~---~~~~~~~~~~~~~~~~  147 (405)
T TIGR00891        89 AG----TLACGF--AP-----G--YITMFIARLVIGIGMGGEYGSSAAYV-IE----SWPK---HLRNKASGLLISGYAV  147 (405)
T ss_pred             HH----HHHHHH--hc-----c--HHHHHHHHHHHHhhhhhhhHHHHHHH-HH----hCCh---hhhhHHHHHHHHHHHH
Confidence            22    111111  11     1  23455555566665555554443322 23    3333   3788999999999999


Q ss_pred             HHHhhHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCC--CCCCccch
Q 007555          304 CEIAGASLFGILLSKYE--PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGP--VPDADNIV  379 (598)
Q Consensus       304 ~~i~GP~lgGlL~s~~~--~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~  379 (598)
                      +.++||.+++.+....+  ......+.    +......+   +...++  |+.++.++.++..++.++..  ..+.++..
T Consensus       148 g~~~~~~l~~~l~~~~~~~w~~~f~~~----~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (405)
T TIGR00891       148 GAVVAAQVYSLVVPVWGDGWRALFFIS----ILPIIFAL---WLRKNI--PEAEDWKEKHAGKALVRTMVDILYGGEHRI  218 (405)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHH----HHHHHHHH---HHHHhC--CCChhHHHHhhhhhhhhhHHHHHhccchhh
Confidence            99999999999987665  22212111    11111111   111222  22111000000000000000  00000000


Q ss_pred             hhhHHHHHHHHHHHhcCCc--hHHHHHHHH-HHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          380 DVGIEAIKLGWKEYMQQPV--LPASLAYVL-LCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYL  455 (598)
Q Consensus       380 ~~~~~~i~eG~~~~~~~pv--ll~~l~~~l-L~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l  455 (598)
                      +...++....++...+++.  +...+.... .++.. ......++.|+. +.|+++.+.|.+.+..++++++|.++.+++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l  297 (405)
T TIGR00891       219 ANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYS-HPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFL  297 (405)
T ss_pred             hhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0001111111111111111  111111111 11111 123345666776 479999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHH
Q 007555          456 VRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTE  535 (598)
Q Consensus       456 ~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~  535 (598)
                      .+|+|..+....+.....   ......+....   ....+.+.  .....+...........++|+.+|+++||+++|+.
T Consensus       298 ~dr~g~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  369 (405)
T TIGR00891       298 GDWLGRRKAYVCSLLAGQ---LLIIPVFAIGA---NVAVLGLG--LFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFT  369 (405)
T ss_pred             HHHhCchhhhHHHHHHHH---HHHHHHHHhCC---chHHHHHH--HHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHH
Confidence            999998766544332111   11111111111   11111111  11111111112234456789999999999999999


Q ss_pred             HHHHHHHH-HHHHHhhhhccCcc
Q 007555          536 ISVASLVE-SVMLGVAIIANDVS  557 (598)
Q Consensus       536 ~sl~~~~~-ll~~~~~i~~~~~~  557 (598)
                      +++.++.. +.+.+.|.+.+..+
T Consensus       370 ~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       370 YQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            98888764 55566677766544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.75  E-value=1.9e-14  Score=154.19  Aligned_cols=379  Identities=12%  Similarity=-0.049  Sum_probs=215.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHH
Q 007555          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (598)
Q Consensus       148 ~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~  227 (598)
                      .+...+...++..+.......+.|.+.-+..-|...++....+..+..++.+++.|.+.||++|||++..+.++..+.  
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~--   93 (406)
T PRK11551         16 TIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLF--   93 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH--
Confidence            456677788888888888899999887665449999999999999999999999999999999999988776432221  


Q ss_pred             HHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHh
Q 007555          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (598)
Q Consensus       228 ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~  307 (598)
                        ..  ......     +  .+.+++..++.|.......+.....+ .|    ..++   ++..++++.......+..++
T Consensus        94 --~~--~~~~~~-----~--~~~~~~~~~l~G~~~~~~~~~~~~~~-~~----~~~~---~~r~~~~~~~~~~~~~g~~~  154 (406)
T PRK11551         94 --SL--ATAQAW-----D--FPSLLVARLLTGVGLGGALPNLIALT-SE----AVGP---RLRGTAVSLMYCGVPFGGAL  154 (406)
T ss_pred             --HH--HHHHhc-----c--HHHHHHHHHHHHhhHHHHHHHHHHHH-HH----HcCH---HHHHHHHHHHHHHHHHHHHH
Confidence              11  111111     1  23344444555555444444333222 23    3333   37889999999999999999


Q ss_pred             hHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHH
Q 007555          308 GASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIK  387 (598)
Q Consensus       308 GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  387 (598)
                      +|.+++.+....+......+...   ..+....   .....+  |+.++.+++++        . ++.   .+...+.+ 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~l--~~~~~~~~~~~--------~-~~~---~~~~~~~~-  213 (406)
T PRK11551        155 ASVIGVLAAGDAAWRHIFYVGGV---GPLLLVP---LLMRWL--PESRAFAQAAG--------A-GKQ---RAPVLRAL-  213 (406)
T ss_pred             HHHHHHHHccccCHHHHHHHHHH---HHHHHHH---HHHHhC--CCChhHHhccC--------c-chh---hhhhHHHH-
Confidence            99999888776554432222211   1111111   111111  21111000000        0 000   01111111 


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007555          388 LGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAA  467 (598)
Q Consensus       388 eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~  467 (598)
                        ++.. +.+..+.........+.....+...++.|+.+.|+++...|...+...+++++|.++.+++.+|+|..+....
T Consensus       214 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~  290 (406)
T PRK11551        214 --FGEG-RATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLL  290 (406)
T ss_pred             --hhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence              1100 1111111111111111111122334566777889999999999999999999999999999999998766543


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHH
Q 007555          468 GLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVM  546 (598)
Q Consensus       468 ~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~  546 (598)
                      +....    ..+...+....  ......  + ..++..++..........+.|+.+|+++||++.|+.++...+.. ..+
T Consensus       291 ~~~~~----~~~~~~~~~~~--~~~~~~--~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~  361 (406)
T PRK11551        291 IYAGI----LASLAALAAAP--SFAGML--L-AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGP  361 (406)
T ss_pred             HHHHH----HHHHHHHHhcC--cHHHHH--H-HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHh
Confidence            32211    11111111111  111111  1 11122222223455667889999999999999999999988875 555


Q ss_pred             HHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007555          547 LGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHW  580 (598)
Q Consensus       547 ~~~~i~~~~~~~f~~l~l~S~~~V~~a~~l~~~~  580 (598)
                      .+.|.+.+..................+..+....
T Consensus       362 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        362 LLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             hhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777655555545444444444444444443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.74  E-value=7.8e-14  Score=147.22  Aligned_cols=345  Identities=14%  Similarity=0.045  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHH
Q 007555          152 LYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAA  231 (598)
Q Consensus       152 L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~  231 (598)
                      +..-.++..++..++.-++|.+..+..-|....+.......+..++.+++.|.++||++||+++..+.+...+.    ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~----~~   85 (385)
T TIGR00710        10 LGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS----SL   85 (385)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH----HH
Confidence            33444666788888888888877666559999999999999999999999999999999999998776532221    11


Q ss_pred             HHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHH
Q 007555          232 MIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASL  311 (598)
Q Consensus       232 ~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~l  311 (598)
                      ...+  ..     +  .+.+++..++.|.......++....+ .|    ..++   ++..++++..+....+...+||.+
T Consensus        86 ~~~~--~~-----~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~---~~~~~~~~~~~~~~~~g~~~g~~~  148 (385)
T TIGR00710        86 GLAL--SN-----N--IETLLVLRFVQAFGASAGSVISQALV-RD----IYPG---EELSRIYSILMPVLALAPAVAPLL  148 (385)
T ss_pred             HHHH--Hc-----c--HHHHHHHHHHHHcchhHHHHHHHHHH-HH----hcCc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  11     1  23344444555555555555443322 34    3343   378899999999999999999999


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHH
Q 007555          312 FGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWK  391 (598)
Q Consensus       312 gGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~  391 (598)
                      +|.+....+......+.....   +....   .....  .|+.   ++.+        +  ++       ..++..+.++
T Consensus       149 ~~~l~~~~~~~~~~~~~~~~~---~~~~~---~~~~~--~~~~---~~~~--------~--~~-------~~~~~~~~~~  200 (385)
T TIGR00710       149 GGYILVWLSWHAIFAFLSLAG---ILLSA---LIFFI--LPET---LPYE--------A--RI-------QISTYFETFL  200 (385)
T ss_pred             HHHHHHHcCHHHHHHHHHHHH---HHHHH---HHHHh--CCCC---CCCc--------c--cC-------CHHHHHHHHH
Confidence            999988776543222221111   11111   11111  1111   1000        0  00       0122344566


Q ss_pred             HHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 007555          392 EYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (598)
Q Consensus       392 ~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~  470 (598)
                      ..+++|.++.......+.+.....+....+.|+. +.|+++...|.+.+..++++++|.++.+++.+|++..+...++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~  280 (385)
T TIGR00710       201 LLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLI  280 (385)
T ss_pred             HHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            6778887665433322222211122333444555 579999999999999999999999999999999988766554332


Q ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHh
Q 007555          471 FQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGV  549 (598)
Q Consensus       471 ~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~  549 (598)
                      ......   +........ .......+........+|.............+..| +++|+++++.++...... ..+...
T Consensus       281 ~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~  355 (385)
T TIGR00710       281 LFAVSA---VLLEITAIL-GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLV  355 (385)
T ss_pred             HHHHHH---HHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            211111   111111100 00011111112222223333333444455555555 689999999998887652 444555


Q ss_pred             h
Q 007555          550 A  550 (598)
Q Consensus       550 ~  550 (598)
                      +
T Consensus       356 ~  356 (385)
T TIGR00710       356 S  356 (385)
T ss_pred             H
Confidence            5

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.74  E-value=8.4e-15  Score=152.98  Aligned_cols=372  Identities=16%  Similarity=0.066  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007555          159 GNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHT  238 (598)
Q Consensus       159 S~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~  238 (598)
                      ..+...+..++.|.+.-+..-|....+....+..+..++.+|+.|.++||++||+++..+.++..+.    ..  .....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~----~~--~~~~~   79 (399)
T TIGR00893         6 NYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF----TG--LQAFA   79 (399)
T ss_pred             HHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHH----HH--HHHHH
Confidence            3344467777888855444339999999999999999999999999999999999988776543222    11  11111


Q ss_pred             hccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 007555          239 VIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSK  318 (598)
Q Consensus       239 ~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~  318 (598)
                      .     +  .+.+++..++.|.......++....+ .|    ..++   ++..++++..+....+..++||.++|.+...
T Consensus        80 ~-----~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  144 (399)
T TIGR00893        80 G-----A--YVSLYILRVLLGAAEAPFFPGIILIV-AS----WFPA---SERATAVSIFNSAQGLGGIIGGPLVGWILIH  144 (399)
T ss_pred             c-----C--HHHHHHHHHHHHHHHHhhhhHHHHHH-HH----hCCH---HHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence            1     1  23445555556665555555443322 23    4443   3788999999999999999999999998887


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCC-CCCCCCCCccchhhhHHHHHHHHHHHhcCC
Q 007555          319 YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTS-NEGPVPDADNIVDVGIEAIKLGWKEYMQQP  397 (598)
Q Consensus       319 ~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~eG~~~~~~~p  397 (598)
                      .+......+....   .+...++. +...   ++.+++++..+++.++. .+....+.+.  +...++..+.++..+++|
T Consensus       145 ~~~~~~~~~~~~~---~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  215 (399)
T TIGR00893       145 FSWQWAFIIEGVL---GIIWGVLW-LKFI---PDPPQKAKWLTEEEKYIVVGGLLAEQQG--KGPSTPKKYQIKELLKDR  215 (399)
T ss_pred             CCchHHHHHHHHH---HHHHHHHh-hhee---cCCCCccccCCHHHHhhcchhhcccccc--ccccCCCccchHHHhcCH
Confidence            6644322222111   11111110 1111   11011100000000000 0000000000  000001122345566777


Q ss_pred             chHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--HHHHHHH
Q 007555          398 VLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAA--GLIFQAS  474 (598)
Q Consensus       398 vll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~--~l~~q~~  474 (598)
                      .++.......++......+...++.|+.+ .|+++...|...+..++++++|.++.+++.+|++..+....  .......
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (399)
T TIGR00893       216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA  295 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            66554433333322223444556667764 79999999999999999999999999999998886541111  0010011


Q ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhc
Q 007555          475 LLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIA  553 (598)
Q Consensus       475 ~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~  553 (598)
                      .+..+...+.....  . ..+...........+. .+.....++.++.+|+++||+++|+.++..++.. +.+.+.+.+.
T Consensus       296 ~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~  371 (399)
T TIGR00893       296 GLVLSLLMFATNYV--N-IPYAALALVALGFFGL-GAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIA  371 (399)
T ss_pred             HHHHHHHHHHhccc--h-hHHHHHHHHHHHHhch-hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhc
Confidence            11112122211111  0 1111111111122222 2567788999999999999999999999988775 5556667776


Q ss_pred             cCcchhHHHHH
Q 007555          554 NDVSHFGFLAT  564 (598)
Q Consensus       554 ~~~~~f~~l~l  564 (598)
                      +....+....+
T Consensus       372 ~~~g~~~~~~~  382 (399)
T TIGR00893       372 ATTGSFAGALM  382 (399)
T ss_pred             cCCCchhHHHH
Confidence            66553444433

>PRK10054 putative transporter; Provisional

Probab=99.73  E-value=2.4e-14  Score=154.47  Aligned_cols=367  Identities=12%  Similarity=0.008  Sum_probs=212.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      ++|+++.+.++.++..+|..+..--+|.++.+..+ |...++....+..+..++.+|++|.+.||++||++++.+.+...
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~   84 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFA   84 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Confidence            45779999999999999999999999999988888 99999999999899999999999999999999999887765432


Q ss_pred             HHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHH
Q 007555          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (598)
Q Consensus       224 ~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~  303 (598)
                      +.    +.+..+.  .     +  .+.+++...+.++....+.++.+.     |+...+++   ++..++++..+....+
T Consensus        85 ~~----~~~~~~~--~-----~--~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~g~~~~~~~l  143 (395)
T PRK10054         85 SG----FIAIPLV--N-----N--VTLVVLFFALINCAYSVFSTVLKA-----WFADNLSS---TSKTKIFSLNYTMLNI  143 (395)
T ss_pred             HH----HHHHHHH--h-----H--HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCH---hHHHHHHHHHHHHHHH
Confidence            22    1111121  1     1  122333333344433333333322     33335553   3788999999999999


Q ss_pred             HHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhH
Q 007555          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (598)
Q Consensus       304 ~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (598)
                      ...+||.++|.++. .+......+.....+..   .++..+.+.+        ++++++       +  ++     ++.+
T Consensus       144 g~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~---~i~~~~~~~~--------~~~~~~-------~--~~-----~~~~  197 (395)
T PRK10054        144 GWTVGPPLGTLLVM-QSINLPFWLAAICSAFP---LVFIQIWVQR--------SEKAIA-------T--ET-----GSVW  197 (395)
T ss_pred             HHHHHHHHHHHHHH-hccCcHHHHHHHHHHHH---HHHHHHHHhc--------cccccc-------c--ch-----hhhh
Confidence            99999999999886 45433222222111111   1111011111        111000       0  00     0101


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHH---HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007555          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFL---TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (598)
Q Consensus       384 ~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl---~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg  460 (598)
                           ..+..+++|.++.......+.......+....+.|+   .+.+.++..+|.+....+++.+...+..+++.+|.+
T Consensus       198 -----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  272 (395)
T PRK10054        198 -----SPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAAN  272 (395)
T ss_pred             -----hhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCC
Confidence                 124567777766543332221111112222333444   345777888899988888877777777788877777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHH
Q 007555          461 ILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVAS  540 (598)
Q Consensus       461 ~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~  540 (598)
                      ..+...++....    ..+...+....  .  .........++..+|..........++++.+|++++|+.+++.+...-
T Consensus       273 ~~~~l~~~~~~~----~~~~~~~~~~~--~--~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~  344 (395)
T PRK10054        273 IRPLMTAGTLCF----VIGLVGFIFSG--N--SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGWL  344 (395)
T ss_pred             chhHHHHHHHHH----HHHHHHHHHcc--h--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHHHHHH
Confidence            655444332211    11211111110  0  111111122333444434344556789999999999999997663333


Q ss_pred             HHHHHHHHhhhhccCcchhHHHHHHHHHHHH
Q 007555          541 LVESVMLGVAIIANDVSHFGFLATLSLLSVV  571 (598)
Q Consensus       541 ~~~ll~~~~~i~~~~~~~f~~l~l~S~~~V~  571 (598)
                      +..+++.+.|.+.+.........+......+
T Consensus       345 G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~  375 (395)
T PRK10054        345 GAAINPLVSGVILTTLPPWSLFVILALAIVA  375 (395)
T ss_pred             HHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence            3446777778887765544444443333333

>PRK11043 putative transporter; Provisional

Probab=99.72  E-value=3.7e-13  Score=144.43  Aligned_cols=349  Identities=12%  Similarity=-0.017  Sum_probs=193.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          149 LYALYACCLAGNLVEQLWNFAWPSA--IALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       149 f~~L~~gq~lS~~G~~i~~fAlpL~--v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      +..+.....++.++.-.+..-.|.+  +.+..+ |....+....+..++..+.+++.|.++||++||+++..+.+...+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   84 (401)
T PRK11043          5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG   84 (401)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH
Confidence            4555566666777777777777766  445556 9999999999999999999999999999999999998776532211


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~  305 (598)
                          +.+..+  ..     +  .+.+++..++.|.......+..+ ++..||    .++   ++..++++....+..++.
T Consensus        85 ----~~~~~~--~~-----~--~~~l~~~~~l~G~~~~~~~~~~~-~~~~~~----~~~---~~~~~~~~~~~~~~~~~~  143 (401)
T PRK11043         85 ----SLGMLW--VE-----S--AAQLLVLRFVQAVGVCSAAVIWQ-ALVIDR----YPA---QKANRVFATIMPLVALSP  143 (401)
T ss_pred             ----HHHHHH--hc-----C--HHHHHHHHHHHHhhhHHHHHHHH-HHHHHh----cCc---HHHHHHHHHHHHHHHHHH
Confidence                111111  11     1  23334433444433222222222 222342    333   267788888888888999


Q ss_pred             HhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHH
Q 007555          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA  385 (598)
Q Consensus       306 i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (598)
                      .+||.++|.+....+...........   .....+    ....+ .+    ++++++           +         ++
T Consensus       144 ~~g~~i~~~l~~~~g~~~~~~~~~~~---~~~~~~----~~~~~-~~----~~~~~~-----------~---------~~  191 (401)
T PRK11043        144 ALAPLLGAWLLNHFGWQAIFATLFAI---TLLLIL----PTLRL-KP----SKKARK-----------Q---------SQ  191 (401)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHH---HHHHHH----HHHHc-CC----CCCccc-----------c---------ch
Confidence            99999999998877754333222111   111111    11111 11    000000           0         01


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 007555          386 IKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAG  465 (598)
Q Consensus       386 i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g  465 (598)
                      -+++++..+++|.++..+............+....+.|+.+.|+++..+|+.....+++.++|++..+++.+|++..+..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~  271 (401)
T PRK11043        192 DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL  271 (401)
T ss_pred             HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            13456677778766543322211111112233445566667899999999988888889999999999999998876654


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-H
Q 007555          466 AAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-S  544 (598)
Q Consensus       466 ~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-l  544 (598)
                      .+.......+.............  .....+....+  ..++........++...+..| +++||+.|+.++++.+.. .
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~  346 (401)
T PRK11043        272 PWLLVLFAVSVIAIWLASLLSHP--SLVPLLIPFCV--MAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFL  346 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC--cHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHH
Confidence            33322221111111111111111  11111111111  111221222223333334445 579999999999988774 4


Q ss_pred             HHHHhhhhccC
Q 007555          545 VMLGVAIIAND  555 (598)
Q Consensus       545 l~~~~~i~~~~  555 (598)
                      .+.+.+.+.+.
T Consensus       347 ~~~~~g~l~~~  357 (401)
T PRK11043        347 ASLLVSALIST  357 (401)
T ss_pred             HHHHHHHccCC
Confidence            55555666553

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.71  E-value=5.8e-14  Score=144.62  Aligned_cols=338  Identities=17%  Similarity=0.059  Sum_probs=215.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHH
Q 007555          150 YALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS  229 (598)
Q Consensus       150 ~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls  229 (598)
                      ..+..+++...++..+.....|.+..+...+....+.......++.++.+|+.|.++||++|||.+..+.+...+...  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~--   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSL--   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHH--
Confidence            467788999999999999999999987755999999999999999999999999999999999998888765433311  


Q ss_pred             HHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhH
Q 007555          230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA  309 (598)
Q Consensus       230 ~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP  309 (598)
                        ....  . .    +  .+.+++..++.|.......+.....+ .|    ..+++   +..++++..+....++.++||
T Consensus        80 --~~~~--~-~----~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~~---~~~~~~~~~~~~~~~g~~~~~  140 (352)
T cd06174          80 --LLAF--A-S----S--LWLLLVGRFLLGLGGGALYPAAAALI-AE----WFPPK---ERGRALGLFSAGFGLGALLGP  140 (352)
T ss_pred             --HHHH--h-c----c--HHHHHHHHHHHHcccccccHhHHHHH-HH----hCCcc---chhhhhhHHHHHHHHHHHHHH
Confidence              1111  1 1    1  23344445555555555444443322 23    45542   788999999999999999999


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHH
Q 007555          310 SLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLG  389 (598)
Q Consensus       310 ~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG  389 (598)
                      .+++.+....+......+.....+..   .+    ....                                  ..     
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~----------------------------------~~-----  174 (352)
T cd06174         141 LLGGLLAESLGWRWLFLILAILGLLL---AL----LLLF----------------------------------LL-----  174 (352)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHH---HH----HHHH----------------------------------HH-----
Confidence            99999988766433222221111111   00    0000                                  00     


Q ss_pred             HHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHH
Q 007555          390 WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQR-GLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK-AGAA  467 (598)
Q Consensus       390 ~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~l-g~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r-~g~~  467 (598)
                             |.++...............+....+.|..+. |.++.+.|...+..++++++|.+..+++.+|.|..+ ....
T Consensus       175 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  247 (352)
T cd06174         175 -------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLI  247 (352)
T ss_pred             -------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence                   2222222222222221123444566666664 999999999999999999999999999999998876 5443


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHH
Q 007555          468 GLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVM  546 (598)
Q Consensus       468 ~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~  546 (598)
                      +....    ..+........  +   .........+..++....+....++.|+.+|+++||+++|+.+...+... ..+
T Consensus       248 ~~~~~----~i~~~~~~~~~--~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  318 (352)
T cd06174         248 GLLLA----ALGLLLLALAP--S---LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGP  318 (352)
T ss_pred             HHHHH----HHHHHHHHHhc--c---HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32211    11111111111  1   11111122333344445678889999999999999999999999999886 445


Q ss_pred             HHhhhhccCcchhHHHHHHHHHHH
Q 007555          547 LGVAIIANDVSHFGFLATLSLLSV  570 (598)
Q Consensus       547 ~~~~i~~~~~~~f~~l~l~S~~~V  570 (598)
                      .+.+.+.+..+......+.+...+
T Consensus       319 ~i~g~l~~~~~~~~~~~~~~~~~~  342 (352)
T cd06174         319 LLAGLLLDTGGYGGVFLILAALAL  342 (352)
T ss_pred             HHHHHHhcccCcchHHHHHHHHHH
Confidence            555766654443333333333333

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.70  E-value=1.1e-13  Score=148.27  Aligned_cols=348  Identities=12%  Similarity=0.060  Sum_probs=204.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHH
Q 007555          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLL  228 (598)
Q Consensus       149 f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~l  228 (598)
                      |..+|.+-+   ++..+..--+|+|+.+...|...+++...+..++.++.+|+.|.++||++||+...  +.+....   
T Consensus         9 ~~~~~~~~~---~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~--~~~~~~~---   80 (382)
T PRK11128          9 LALSYFGYF---FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPAL--RLLALLT---   80 (382)
T ss_pred             HHHHHHHHH---HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHH--HHHHHHH---
Confidence            444444444   44577777788999876559999999999999999999999999999999953211  1111011   


Q ss_pred             HHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhh
Q 007555          229 SAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (598)
Q Consensus       229 s~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~G  308 (598)
                      .+..+.+....    ++  .+.+++..++.+.......++....+ .+|     .    ++..+++++.+....++..+|
T Consensus        81 ~~~~~~~~~~~----~~--~~~l~i~~~l~g~~~~~~~~~~~a~~-~~~-----~----~~~~~a~~~~~~~~~lg~~ig  144 (382)
T PRK11128         81 LLFAVAFWFGA----HS--FWLLFVAIGLFNLFFSPLVPLTDALA-NTW-----Q----KQIGLDYGKVRLWGSIAFVIG  144 (382)
T ss_pred             HHHHHHHHHhc----cc--HHHHHHHHHHHHHHHcccccHHHHHH-HHH-----H----hhccCCcchHHHHHHHHHHHH
Confidence            00111111111    11  24444444445555544444443322 233     1    145677888888889999999


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHH
Q 007555          309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKL  388 (598)
Q Consensus       309 P~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e  388 (598)
                      |.++|.+...+|..........    .....+   .....  .++.+  +++++       ++  +        .++..+
T Consensus       145 p~lgg~l~~~~g~~~~f~~~~~----~~~~~~---~~~~~--~~~~~--~~~~~-------~~--~--------~~~~~~  196 (382)
T PRK11128        145 SALTGKLVSWFGEQAILWILTA----GVASML---LGQLL--RPTIM--PQGES-------RQ--Q--------ESAGWP  196 (382)
T ss_pred             HHHHHHHHHHcChhHHHHHHHH----HHHHHH---HHHHc--cCCCC--Ccccc-------cc--c--------cccccc
Confidence            9999999998886543332221    111111   11111  12111  10000       00  0        011234


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007555          389 GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG  468 (598)
Q Consensus       389 G~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~  468 (598)
                      +++..+|+|.++..+....+.......+...++.|+.+.|+++..+|.+.+.++++.+.+.+..+++.+|.|..+....+
T Consensus       197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~  276 (382)
T PRK11128        197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLS  276 (382)
T ss_pred             hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            67788899987765443333322212345566778888899999999999999999999999999999999987765443


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH--HHHH
Q 007555          469 LIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV--ESVM  546 (598)
Q Consensus       469 l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~--~ll~  546 (598)
                      ....    ..+.......+   .  .+.+....++..++...+....+.+.|+. |++++|++.+..+.+++..  ..++
T Consensus       277 ~~~~----~~~~~~~~~~~---~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~  346 (382)
T PRK11128        277 AICG----VVRWGLMGSTT---A--LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMT  346 (382)
T ss_pred             HHHH----HHHHHHHHhhh---h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3221    11111111111   1  11112223333344445677888888887 5666799999888776555  3556


Q ss_pred             HHhhhhccCcch
Q 007555          547 LGVAIIANDVSH  558 (598)
Q Consensus       547 ~~~~i~~~~~~~  558 (598)
                      .+.|.+.+....
T Consensus       347 ~i~G~l~~~~g~  358 (382)
T PRK11128        347 VLSGFLYQHLGA  358 (382)
T ss_pred             HHHHHHHHhccH
Confidence            666777665543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.69  E-value=2.6e-13  Score=143.00  Aligned_cols=343  Identities=13%  Similarity=0.035  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHH-HHHHHHHHHHHHH
Q 007555          153 YACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYIC-LNTVQAAAQLLSA  230 (598)
Q Consensus       153 ~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~-~d~~q~~~v~ls~  230 (598)
                      ....++..++..++...+|+++.+..+ |...++....+..+..++.+|+.|.++||++|||.++. +.+..    ++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~----~~~~   78 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLA----ALAC   78 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH----HHHH
Confidence            456788899999999999999988888 99999999988889999999999999999998886554 33221    1111


Q ss_pred             HHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHH
Q 007555          231 AMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGAS  310 (598)
Q Consensus       231 ~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~  310 (598)
                       + .....     .+  .+.+++..++.+.......+.... +-++    ..+++ .......++..+....++.++||.
T Consensus        79 -~-~~~~~-----~~--~~~l~~~~~~~g~~~~~~~p~~~~-~~~~----~~~~~-~~~~~~~~~~~~~~~~~g~~ig~~  143 (375)
T TIGR00899        79 -L-LFAWN-----RN--YFLLLVLGVLLSSFASTANPQLFA-LARE----HADRT-GREAVMFSSVMRAQISLAWVIGPP  143 (375)
T ss_pred             -H-HHHhc-----ch--HHHHHHHHHHHHhhhhhhHHHHHH-HHHH----Hhhhc-chhhHHHHHHHHHHHhHHHHHhhh
Confidence             1 11111     11  123333334444444434443322 2233    22321 111222378888888899999999


Q ss_pred             HHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHH
Q 007555          311 LFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGW  390 (598)
Q Consensus       311 lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~  390 (598)
                      ++|.+....+......+.....+..   ..    ...+. .|+.++++++          +  +.    +   ++    +
T Consensus       144 ~~~~l~~~~~~~~~f~~~~~~~~~~---~~----~~~~~-~~~~~~~~~~----------~--~~----~---~~----~  192 (375)
T TIGR00899       144 LAFWLALGFGFTVMFLTAALAFVLC---GV----LVWLF-LPSYPRGAPG----------A--LT----R---LE----V  192 (375)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHH---HH----HHHHh-CCCcccCccc----------c--cC----c---ch----h
Confidence            9999998777554333322211111   11    11111 1211110000          0  00    0   01    1


Q ss_pred             HHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007555          391 KEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (598)
Q Consensus       391 ~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l  469 (598)
                      +..+++|.++.......+.+.....+...++.|+. +.|.++.+.|.+.+.....++.+.++.+++.+|+|..+...++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~  272 (375)
T TIGR00899       193 RGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAA  272 (375)
T ss_pred             hhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHH
Confidence            22455665554333322222211123334555664 57999999999988888888888899999999999776654433


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHH
Q 007555          470 IFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLG  548 (598)
Q Consensus       470 ~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~  548 (598)
                      .....   .........+   ....+ .  ...+..++........+.+.|+..|+ ++|+++|+.++..+... ..+.+
T Consensus       273 ~~~~~---~~~~~~~~~~---~~~~~-~--~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~  342 (375)
T TIGR00899       273 LAGVA---FYTGLAADNS---LWALL-M--LQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSV  342 (375)
T ss_pred             HHHHH---HHHHHHHHHH---HHHHH-H--HHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHH
Confidence            21111   1111111111   11111 1  11111222222344556778888876 46799999988877664 44555


Q ss_pred             hhhhccC
Q 007555          549 VAIIAND  555 (598)
Q Consensus       549 ~~i~~~~  555 (598)
                      .+.+.+.
T Consensus       343 ~g~~~~~  349 (375)
T TIGR00899       343 GGILAER  349 (375)
T ss_pred             HHHHHHh
Confidence            5665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.69  E-value=1e-13  Score=152.75  Aligned_cols=368  Identities=13%  Similarity=0.097  Sum_probs=204.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      |.+.+..++++++++.+...+....+|.+..+..-|....+.......+..++.+++.|.++||++||+++..+.++..+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   97 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSV   97 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            44678899999999999999999888877654433888888888888899999999999999999999998877654332


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                      .    +.+..+  ..     +  .+.+++..++.|.......+.....+ .|    ..++   ++..++++.......++
T Consensus        98 ~----~~~~~~--~~-----~--~~~l~~~~~l~G~~~~~~~~~~~~~~-~~----~~~~---~~r~~~~~~~~~~~~~g  156 (496)
T PRK03893         98 G----TLACGF--AP-----G--YWTLFIARLVIGMGMAGEYGSSATYV-IE----SWPK---HLRNKASGFLISGFSIG  156 (496)
T ss_pred             H----HHHHHH--Hh-----H--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HcCH---HHHHHHHHHHHHHHHHH
Confidence            2    111111  11     1  23344555555554444433332222 23    3333   37889999999999999


Q ss_pred             HHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHH
Q 007555          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (598)
Q Consensus       305 ~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (598)
                      .++||.+++.+....+......+.    +......+   +...+.  |+.++.+++++       +. .+.++..+...+
T Consensus       157 ~~~~~~~~~~l~~~~~w~~~f~~~----~~~~~~~~---~~~~~~--p~~~~~~~~~~-------~~-~~~~~~~~~~~~  219 (496)
T PRK03893        157 AVVAAQVYSLVVPVWGWRALFFIG----ILPIIFAL---WLRKNL--PEAEDWKEKHA-------GK-APVRTMVDILYR  219 (496)
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHH----HHHHHHHH---HHHHhC--CCchhhhhhcc-------cc-ccchhHHHHHhc
Confidence            999999999998877654332221    11111111   111111  21111000000       00 000000000000


Q ss_pred             ---HHH---------HHHHHHh----cCCchH-----------------------HHH-HHH-HHHHHhh--hhhhHHHH
Q 007555          385 ---AIK---------LGWKEYM----QQPVLP-----------------------ASL-AYV-LLCLNVV--LTPGSLMT  421 (598)
Q Consensus       385 ---~i~---------eG~~~~~----~~pvll-----------------------~~l-~~~-lL~~~vl--l~f~~l~~  421 (598)
                         +..         -.+...+    ++....                       +.. ... ..++...  ......++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp  299 (496)
T PRK03893        220 GEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLP  299 (496)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHH
Confidence               000         0000000    000000                       000 000 0001100  01234567


Q ss_pred             HHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Q 007555          422 AFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCL  500 (598)
Q Consensus       422 ~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~  500 (598)
                      .|++ +.|+++.+.|.+.+..++++++|+++.+++.+|+|..+....+.....   ...........   .....+....
T Consensus       300 ~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~  373 (496)
T PRK03893        300 TYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQ---LLIIPVFAIGG---ANVWVLGLLL  373 (496)
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH---HHHHHHhhccc---cHHHHHHHHH
Confidence            7886 689999999999999999999999999999999997766543322111   11111111111   1111111111


Q ss_pred             HHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccCcc
Q 007555          501 IVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIANDVS  557 (598)
Q Consensus       501 i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~~~  557 (598)
                      ......+. .......+++|+.+|+++||+++|+..++..+.. +++.+.|.+.+..+
T Consensus       374 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g  430 (496)
T PRK03893        374 FFQQMLGQ-GISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD  430 (496)
T ss_pred             HHHHHHhc-ccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence            11001111 1234556789999999999999999999888775 45566677766544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.68  E-value=1e-12  Score=140.50  Aligned_cols=272  Identities=15%  Similarity=0.082  Sum_probs=165.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHH
Q 007555          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (598)
Q Consensus       147 r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v  226 (598)
                      |-.+..+..-.....|..++..++|.+..+...|...+++......+..++..|+.|.++||++||++++.+-+.-.   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~---   79 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFI---   79 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHH---
Confidence            34455677778889999999999999988876698899998888899999999999999999999999886654321   


Q ss_pred             HHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHH
Q 007555          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (598)
Q Consensus       227 ~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i  306 (598)
                       +...+..+  ..     +  .+.+++.-++.|.......+.....+ .|    ..++   ++..++++..+....++.+
T Consensus        80 -i~~~~~~~--~~-----~--~~~~~~~~~l~g~~~~~~~~~~~~~i-~~----~~~~---~~r~~~~~~~~~~~~i~~~  141 (392)
T PRK10473         80 -IASLLCSL--AE-----T--SSLFLAGRFLQGIGAGCCYVVAFAIL-RD----TLDD---RRRAKVLSLLNGITCIIPV  141 (392)
T ss_pred             -HHHHHHHH--hC-----c--HHHHHHHHHHHHhhhhHHHHHHHHHH-HH----HcCH---HHHHHHHHHHHHHHHHHHH
Confidence             11111111  11     1  12233334445554444343332222 23    3333   3788999999999999999


Q ss_pred             hhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHH
Q 007555          307 AGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAI  386 (598)
Q Consensus       307 ~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  386 (598)
                      +||.+++.+....+......+...   .++....   +....+  ++.   ++.++          ++.    .+..   
T Consensus       142 ~~~~i~~~l~~~~g~~~~~~~~~~---~~~i~~~---~~~~~~--~~~---~~~~~----------~~~----~~~~---  193 (392)
T PRK10473        142 LAPVLGHLIMLKFPWQSLFYTMAA---MGILVLL---LSLFIL--KET---RPARA----------PAA----SSKP---  193 (392)
T ss_pred             HHHHHHHHHHhCcChHHHHHHHHH---HHHHHHH---HHHHHc--CCC---CCccc----------CCc----cchH---
Confidence            999999998876664332222211   1111111   111111  111   11000          000    0111   


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 007555          387 KLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAG  465 (598)
Q Consensus       387 ~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g  465 (598)
                      ++ .+..+++|.++..+....+.+.....+....+.|.. +.|+++..+|...+..++++++|.+..+++.+|+|..+..
T Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~  272 (392)
T PRK10473        194 RE-NSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLM  272 (392)
T ss_pred             HH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            11 223456665544333322222211223233344444 5799999999999999999999999999999999987665


Q ss_pred             HHH
Q 007555          466 AAG  468 (598)
Q Consensus       466 ~~~  468 (598)
                      .++
T Consensus       273 ~~~  275 (392)
T PRK10473        273 LTS  275 (392)
T ss_pred             HHH
Confidence            544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.68  E-value=5.2e-13  Score=142.92  Aligned_cols=371  Identities=11%  Similarity=0.031  Sum_probs=211.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       146 ~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      ++.+..+..+.++-..++.+..-.+|.+..+..-|....+....+..+..++..|+.|.+.||++||+++..+.++..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG   81 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            35677888899999999988888888877665448888899999999999999999999999999999998876643322


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~  305 (598)
                          ..  ......     +  .+.+++.-++.|.......+.....++ +    +.++   ++..++++.......+..
T Consensus        82 ----~~--l~~~~~-----~--~~~l~~~r~l~G~~~~~~~~~~~~~~~-~----~~~~---~~~~~~~~~~~~~~~~g~  140 (382)
T PRK10091         82 ----NA--MFTLSS-----S--YLMLAIGRLVSGFPHGAFFGVGAIVLS-K----IIKP---GKVTAAVAGMVSGMTVAN  140 (382)
T ss_pred             ----HH--HHHHhC-----c--HHHHHHHHHHHHhhhHHHHHHHHHHHH-H----hCCh---HHhhHHHHHHHHHHHHHH
Confidence                11  111111     1  244555555566554444443333332 3    3443   267789999998889999


Q ss_pred             HhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHH
Q 007555          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA  385 (598)
Q Consensus       306 i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (598)
                      .+||.++|.+....+......+.....   ....+   .....+  |+.+  +++             +     .    +
T Consensus       141 ~~g~~l~~~l~~~~gwr~~f~~~~~~~---~~~~~---~~~~~l--p~~~--~~~-------------~-----~----~  188 (382)
T PRK10091        141 LLGIPLGTYLSQEFSWRYTFLLIAVFN---IAVLA---SIYFWV--PDIR--DEA-------------K-----G----G  188 (382)
T ss_pred             HHhccHHHHHhhhccHHHHHHHHHHHH---HHHHH---HHHHhC--CCCC--ccc-------------c-----c----C
Confidence            999999999988767544333322111   11111   111111  2111  100             0     0    0


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 007555          386 IKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKA  464 (598)
Q Consensus       386 i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~  464 (598)
                      .++.++.. ++|.....+....+.+.......+..++|+. ..|+++...|.+.+..++++++|.++.+++.+|+|..+.
T Consensus       189 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~  267 (382)
T PRK10091        189 LREQFHFL-RSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI  267 (382)
T ss_pred             HHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH
Confidence            12334433 4443332222222211110112233445665 479999999999999999999999999999999998776


Q ss_pred             HHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHhhhhhhhhh-hhhhhhhccCCCccchhHHHHHHHHHHHH
Q 007555          465 GAAGLIFQASLLAMAVAVY-WSGSLSQQNPLLFFLCLIVLSRLGHMSYDI-VGAQILQTGIPSSKANLIGTTEISVASLV  542 (598)
Q Consensus       465 g~~~l~~q~~~L~~~v~~~-~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl-~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~  542 (598)
                      ..++....    ..+.... ...+   .......  ...+...|...... ......|+..|++.+|+..+ ....+-+.
T Consensus       268 ~~~~~~~~----~i~~~~~~~~~~---~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~  337 (382)
T PRK10091        268 AAVTDFII----VLALLMLFFFGG---MKTASLI--FAFICCAGLFALSAPLQILLLQNAKGGELLGAAGG-QIAFNLGS  337 (382)
T ss_pred             HHHHHHHH----HHHHHHHHHHHh---hHHHHHH--HHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHH-HHHHHHHH
Confidence            55443221    1111111 1111   0111111  11112223222222 23356777778888888754 22233333


Q ss_pred             HHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007555          543 ESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHW  580 (598)
Q Consensus       543 ~ll~~~~~i~~~~~~~f~~l~l~S~~~V~~a~~l~~~~  580 (598)
                      .+.+.+.|.+.+....+....+.+.+.+..+......+
T Consensus       338 ~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        338 AIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            45677778877765445555555544444443333333

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.68  E-value=4.4e-13  Score=146.29  Aligned_cols=375  Identities=10%  Similarity=-0.039  Sum_probs=199.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      |.+-+..+..+.++..+........+|.+.-+..-|...++....+..++..+.+++.|.+.||++||+++..+.++-.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            33445556666666666666777888888766433999999999999999999999999999999999998777643221


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                      .      .+......     +  .+.+++..++.+.......+.....+ .+|    .++   ++..++.+.......++
T Consensus       101 ~------~~~~~~~~-----~--~~~l~~~~~l~g~~~g~~~~~~~~~~-~~~----~~~---~~rg~~~~~~~~~~~~g  159 (434)
T PRK11663        101 I------NILFGFSS-----S--LWAFALLWVLNAFFQGWGWPVCAKLL-TAW----YSR---TERGGWWAIWNTAHNVG  159 (434)
T ss_pred             H------HHHHHHHh-----H--HHHHHHHHHHHHHHHHccchHHHHHH-HHh----CCH---HHHHHHHHHHHHHHHHH
Confidence            1      11111111     1  12333333344544444434333322 333    333   36889999999999999


Q ss_pred             HHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-cccccccCCCCCCCCCCCccchhhhH
Q 007555          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRA-KCSQSCCRTSNEGPVPDADNIVDVGI  383 (598)
Q Consensus       305 ~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (598)
                      .++||.++|.+....+......+.....   +...++   ....+. +.++.. .++.+..+++.++...+.++ .+   
T Consensus       160 ~~~~~~~~~~l~~~~gw~~~f~~~~i~~---~~~~~~---~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~---  228 (434)
T PRK11663        160 GALIPLVVGAIALHYGWRYGMMIAGIIA---IVVGLF---LCWRLR-DKPQAMGLPSVGEWRHDALELAQQQEG-AG---  228 (434)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHH---HHHHHH---HHHHcC-CCHhhcCCCCcccccccccccchhccc-cC---
Confidence            9999999999988777544333222111   111111   111111 111100 00000000000000000000 00   


Q ss_pred             HHHHHHHH-HHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007555          384 EAIKLGWK-EYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI  461 (598)
Q Consensus       384 ~~i~eG~~-~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~  461 (598)
                      .+.++.++ +.+++|.+........+.+.....+...++.|+. +.|+++.+.+...+...+++++|.++.+++.+|++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~  308 (434)
T PRK11663        229 LSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN  308 (434)
T ss_pred             CChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence            01222232 3567776554332222222211234445677875 479999999999999999999999999999988721


Q ss_pred             -hH-HHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHH
Q 007555          462 -LK-AGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVA  539 (598)
Q Consensus       462 -~r-~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~  539 (598)
                       .| .........  ++............ .......+..++.   ++.............+..|++.+|++.|+.++..
T Consensus       309 ~~r~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  382 (434)
T PRK11663        309 GNRGPMNLIFAAG--ILLSVGSLWLMPFA-SYVMQAACFFTIG---FFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFA  382 (434)
T ss_pred             CCccHHHHHHHHH--HHHHHHHHHHcccc-cHHHHHHHHHHHH---HHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHH
Confidence             11 111110000  01111111111111 1111111111111   1111111122345678889999999999999998


Q ss_pred             HHHH-HHHHHhhhhccCcc
Q 007555          540 SLVE-SVMLGVAIIANDVS  557 (598)
Q Consensus       540 ~~~~-ll~~~~~i~~~~~~  557 (598)
                      ++.. ..+.+.+.+.+..+
T Consensus       383 ~~g~~~~p~~~g~l~~~~g  401 (434)
T PRK11663        383 YLGAALSGYPLAKVLEIWH  401 (434)
T ss_pred             HHHHHHhcccHHHHHHhcc
Confidence            8875 45566677665433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.68  E-value=1.2e-12  Score=142.39  Aligned_cols=348  Identities=12%  Similarity=0.004  Sum_probs=194.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHH
Q 007555          152 LYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAA  231 (598)
Q Consensus       152 L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~  231 (598)
                      +-..-+++.+...++.-++|-...+...|....+.......+...+..++.|.+.||++||+++..+.++..+.    ..
T Consensus        21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~----~~   96 (413)
T PRK15403         21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA----CA   96 (413)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH----HH
Confidence            44455666677778888888754444447777777777778888899999999999999999998876543322    11


Q ss_pred             HHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHH
Q 007555          232 MIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASL  311 (598)
Q Consensus       232 ~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~l  311 (598)
                        ......     +  .+.+++.-++.|+.+....+... ++.+|    ..++   ++..++++.......++.++||.+
T Consensus        97 --~~~~a~-----~--~~~l~~~r~l~Gi~~~~~~~~~~-~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~g~~l  159 (413)
T PRK15403         97 --ATLFTT-----S--MTQFLIARFIQGTSICFIATVGY-VTVQE----AFGQ---TKGIKLMAIITSIVLVAPIIGPLS  159 (413)
T ss_pred             --HHHHcC-----C--HHHHHHHHHHHHHHHHHHHHHHH-HHHHH----hcCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence              111111     1  23444554555655544333332 22334    3332   378899999999999999999999


Q ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHH
Q 007555          312 FGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWK  391 (598)
Q Consensus       312 gGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~  391 (598)
                      +|.+....|......+..+..   ++..+   +....+  |+.   +++++       +   +      ...++..++++
T Consensus       160 g~~l~~~~gw~~~f~~~~~~~---~i~~~---~~~~~l--p~~---~~~~~-------~---~------~~~~~~~~~~~  212 (413)
T PRK15403        160 GAALMHFVHWKVLFAIIAVMG---LIAFV---GLLLAM--PET---VKRGA-------V---P------FSAKSVLRDFR  212 (413)
T ss_pred             HHHHHHhcCHHHHHHHHHHHH---HHHHH---HHHHhC--CCC---ccccC-------C---C------CChHHHHHHHH
Confidence            999988777554333322211   11111   111111  211   11000       0   0      01233456778


Q ss_pred             HHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 007555          392 EYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (598)
Q Consensus       392 ~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~  470 (598)
                      ..++||.++.......+.+.....+....+.|+.+ .|+++..+|+.......++++|+.+.+++.+|.+..|.......
T Consensus       213 ~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  292 (413)
T PRK15403        213 NVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVP  292 (413)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence            88899987764443333222212344455667665 59999999999887888888888888887655433333211111


Q ss_pred             HHHH-HHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhh--hhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHH
Q 007555          471 FQAS-LLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSY--DIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVM  546 (598)
Q Consensus       471 ~q~~-~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~f--dl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~  546 (598)
                      .... ++.+.........   ....  ...++++..+|....  ++...++.|..+|   +||+.|+.+.++.+.. +..
T Consensus       293 ~~~ig~~l~~~~~~~~~~---~~~~--~~~~~~l~~~G~~~~~p~~~~~al~~~~~~---~G~a~a~~~~~~~~~~~~~~  364 (413)
T PRK15403        293 IQLVGLALLIVGNLLWPH---VWLW--SVLGTSLYAFGIGLIFPTLFRFTLFSNNLP---KGTVSASLNMVILMVMAVSV  364 (413)
T ss_pred             HHHHHHHHHHHHHHHccc---cHHH--HHHHHHHHHHHHHHHhHHHHHHHhccCCCC---CcHHHHHHHHHHHHHHHHHH
Confidence            1111 1111111111111   1111  111222222332222  3444467777776   6999999999998885 334


Q ss_pred             HHhhhhccC
Q 007555          547 LGVAIIAND  555 (598)
Q Consensus       547 ~~~~i~~~~  555 (598)
                      .+.+.+...
T Consensus       365 ~~~g~~~~~  373 (413)
T PRK15403        365 EIGRWLWFN  373 (413)
T ss_pred             HHHHHHHHc
Confidence            444555444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.68  E-value=2.8e-14  Score=149.05  Aligned_cols=367  Identities=14%  Similarity=0.048  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHH
Q 007555          154 ACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMI  233 (598)
Q Consensus       154 ~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l  233 (598)
                      .+.+........+.++.|.+.-+..-|....+....+..+...+..+++|.++||++||++++.+.++..+.    ..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~----~~~~   77 (379)
T TIGR00881         2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIV----NLFF   77 (379)
T ss_pred             chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHH----HHHH
Confidence            344556666777888888655443339999999999999999999999999999999999998876543322    1111


Q ss_pred             HHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhH-HHH
Q 007555          234 IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA-SLF  312 (598)
Q Consensus       234 ~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP-~lg  312 (598)
                      .+  ..     +  .+.+++..++.|.......+.....+ .|    ..++   ++..++++..+....+..++|| .++
T Consensus        78 ~~--~~-----~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~----~~~~---~~r~~~~~~~~~~~~~g~~~~~~~~~  140 (379)
T TIGR00881        78 GF--ST-----S--LWVMAALWALNGIFQGMGWPPCGRTV-TK----WFSR---SERGTWVSFWNCSHNVGGGLLPPLVL  140 (379)
T ss_pred             HH--hh-----h--HHHHHHHHHHHHhhccccCCchHHHH-HH----hcCH---hhheeeEeehhccchhHHHHHHHHHH
Confidence            11  11     1  23344444455554444444443322 23    3343   3678899999999999999999 566


Q ss_pred             HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHH
Q 007555          313 GILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKE  392 (598)
Q Consensus       313 GlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~  392 (598)
                      +.+....+......+....   ..+..++. +...   ++.+++++.++++ ++.+++.+.+ +...++..++.+..+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~---~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~  211 (379)
T TIGR00881       141 FGIAELYSWHWVFIVPGII---AIIVSLIC-FLLL---RDSPQSCGLPPAE-EMPNEEPDGD-AEKKEEELTKKQIFLQY  211 (379)
T ss_pred             HHHHhcCCchhHHHHHHHH---HHHHHHHH-heee---CCCccccccCccc-cCcccccccc-cccccccccchHHHHHH
Confidence            6665555543322222111   11111110 1111   1111110000000 0000000000 00000111223456677


Q ss_pred             HhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 007555          393 YMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIF  471 (598)
Q Consensus       393 ~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~  471 (598)
                      .+++|.++.......+++.....+...++.|+.+ .|+++.+.|...+..++++++|.++.+++.+|.+..+........
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~  291 (379)
T TIGR00881       212 VLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF  291 (379)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHH
Confidence            7888877654333333222213445566777764 699999999999999999999999999998876433222211111


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhh
Q 007555          472 QASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVA  550 (598)
Q Consensus       472 q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~  550 (598)
                      . .....+...++......  .....+ ..................+.++.+|++.||++.|+.++..++.. ..+.+.|
T Consensus       292 ~-~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  367 (379)
T TIGR00881       292 M-ALIIVSLLVYWLNPAAN--PLMDLI-CLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG  367 (379)
T ss_pred             H-HHHHHHHHHHhcCcchh--HHHHHH-HHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHH
Confidence            1 11111111222111101  111111 11111111222333445678999999999999999998887774 4445555


Q ss_pred             hhcc
Q 007555          551 IIAN  554 (598)
Q Consensus       551 i~~~  554 (598)
                      .+.+
T Consensus       368 ~l~~  371 (379)
T TIGR00881       368 YLAD  371 (379)
T ss_pred             HHHH
Confidence            5543

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.67  E-value=1.5e-13  Score=148.83  Aligned_cols=365  Identities=10%  Similarity=-0.002  Sum_probs=194.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      ++++|+.++...++-.++..++.--+|.|+.+..+ |....++......+...+.+|+.|.+.||++|||++..+..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~   87 (420)
T PRK09528          8 KNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLL   87 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            67789999999999999888888888888888788 99999999999999999999999999999999999876543321


Q ss_pred             HHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHH
Q 007555          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (598)
Q Consensus       224 ~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~  303 (598)
                      +.   ......+....     ......++. ..+.+........+....+ .+|.+..     +++.....+..+....+
T Consensus        88 ~~---~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~g~~~g~~~~~~~~  152 (420)
T PRK09528         88 VL---FGPFFIYVFAP-----LLQYNILLG-AIVGGIYLGFGFLAGAGAI-EAYIERV-----SRRSGFEYGRARMWGSL  152 (420)
T ss_pred             HH---HHHHHHHHHHH-----HHHHHHHHH-HHHHHHHhhhhhccchhhh-hhHHHHH-----HhhccccchhhHHhhhH
Confidence            11   10010110000     000001111 1111111111111111222 2232111     11222344667777888


Q ss_pred             HHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhH
Q 007555          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (598)
Q Consensus       304 ~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (598)
                      +..+||.++|.++.. +.........+..+..    .   ...... +++.+++++.++      +++ ++.   .+..+
T Consensus       153 g~~i~~~~~g~l~~~-~~~~~f~~~~~~~~~~----~---~~~~~~-~~~~~~~~~~~~------~~~-~~~---~~~~~  213 (420)
T PRK09528        153 GWALCAFIAGILFNI-NPQINFWLGSGSALIL----L---VLLFFA-KPDAPSTAKVAN------ALG-ANA---SAVSL  213 (420)
T ss_pred             HHHHHHHHHHHHHhc-CchHhHHHHHHHHHHH----H---HHHhcc-cccccchhhhcc------chh-ccc---ccccH
Confidence            999999999999763 4332222211111111    1   111111 111111000000      000 000   01112


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007555          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ----RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (598)
Q Consensus       384 ~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~----lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrl  459 (598)
                         + .++.++|||.++..+............+...++.|+.+    .+.+...+|.+.++..++..++.+..+++.+|+
T Consensus       214 ---~-~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  289 (420)
T PRK09528        214 ---K-DALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI  289 (420)
T ss_pred             ---H-HHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               2 23446677765543332222211111233345555542    467778899999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHH-HHHH
Q 007555          460 GILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTT-EISV  538 (598)
Q Consensus       460 g~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv-~~sl  538 (598)
                      |..+...++...    ...+...+....  +.. .  +.....+..++...+.....++.++.+|++.++...+. .++.
T Consensus       290 g~~~~~~~~~~l----~~~~~~l~~~~~--~~~-~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  360 (420)
T PRK09528        290 GAKNALLLAGTI----MAVRIIGSGFAT--GPL-E--VSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFA  360 (420)
T ss_pred             CcchhhHHHHHH----HHHHHHHHHhcc--cHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHH
Confidence            987765443221    111211111111  111 1  11122223334444556667889999999999988655 3333


Q ss_pred             HHHH-HHHHHHhhhhccCc
Q 007555          539 ASLV-ESVMLGVAIIANDV  556 (598)
Q Consensus       539 ~~~~-~ll~~~~~i~~~~~  556 (598)
                      ..+. ...+.+.|.+.+..
T Consensus       361 ~~lg~~ig~~~~G~l~~~~  379 (420)
T PRK09528        361 KQLGAVFLSTLAGNLYDSI  379 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            3322 24556666665543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.66  E-value=7.8e-13  Score=147.03  Aligned_cols=368  Identities=13%  Similarity=0.037  Sum_probs=215.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHH
Q 007555          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (598)
Q Consensus       148 ~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~  227 (598)
                      .+..+..+.++..+...+...|+|-+..++..|...++....+..+....+.|+.|.+.||++||++++.+.++..+.  
T Consensus         7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~--   84 (495)
T PRK14995          7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA--   84 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--
Confidence            356678899999999999999999998877668888899988889999999999999999999999998877643322  


Q ss_pred             HHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHh
Q 007555          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (598)
Q Consensus       228 ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~  307 (598)
                        +.+..+  ..     +  .+.+++.-++.|+......++....+.++    ..++   ++..++++.......++..+
T Consensus        85 --~~~~~~--a~-----~--~~~li~~r~l~G~g~~~~~~~~~~~l~~~----~~~~---~~r~~~~g~~~~~~~~g~~~  146 (495)
T PRK14995         85 --SLAAAF--SP-----T--ASWLIATRALLAIGAAMIVPATLAGIRAT----FTEE---KQRNMALGVWAAVGSGGAAF  146 (495)
T ss_pred             --HHHHHH--cC-----C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCH---HHHHHHHHHHHHHHHHHHHH
Confidence              111111  11     1  23344444455655555555444433333    2222   47899999999999999999


Q ss_pred             hHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCC-------------CCCCCCC
Q 007555          308 GASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTS-------------NEGPVPD  374 (598)
Q Consensus       308 GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~-------------~~~~~~~  374 (598)
                      ||.++|.+....|......++....+...   .    +..+. .|+.+++++++....+.             -.+.. .
T Consensus       147 gp~lgg~l~~~~gwr~~f~i~~~~~~~~~---~----l~~~~-l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~-~  217 (495)
T PRK14995        147 GPLVGGILLEHFYWGSVFLINVPIVLVVM---G----LTARY-VPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTAL-K  217 (495)
T ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHHHH---H----HHHHh-CCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhcc-c
Confidence            99999999998886554443322211111   1    11111 12110000000000000             00000 0


Q ss_pred             Cccchhhh---------------HHHHHH-----HHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhH
Q 007555          375 ADNIVDVG---------------IEAIKL-----GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSI  433 (598)
Q Consensus       375 ~~~~~~~~---------------~~~i~e-----G~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~  433 (598)
                      ........               +.|.+.     .+ ..+++|.+.......+..+.....+...++.|+.. +|+++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~  296 (495)
T PRK14995        218 GFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDM-RLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLE  296 (495)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCH-HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            00000000               000000     01 23456655554443333322212333445567764 7999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHhhhhhhhh
Q 007555          434 IGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVY-WSGSLSQQNPLLFFLCLIVLSRLGHMSYD  512 (598)
Q Consensus       434 iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~-~~g~~~~~~~~~~~~~~i~lsr~Gl~~fd  512 (598)
                      .|......+++..+++.+.+++.+|+|..+....+....    ..+...+ ..........   .....++.++|..+..
T Consensus       297 ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~---~~~~~~l~G~g~g~~~  369 (495)
T PRK14995        297 AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALS----ALSFYGLAMTDFSTQQWQ---AWGLMALLGFSAASAL  369 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH----HHHHHHHHHhcCCCchHH---HHHHHHHHHHhHHHHH
Confidence            999999999999999999999999999755444333211    1111111 1111011111   1122334445555667


Q ss_pred             hhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhh
Q 007555          513 IVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAII  552 (598)
Q Consensus       513 l~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~  552 (598)
                      ...+...|+.+|++++|+.+++.++..++.. .+..+.+.+
T Consensus       370 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        370 LASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788899999999999999999988877664 333333433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.66  E-value=2.3e-12  Score=138.66  Aligned_cols=346  Identities=13%  Similarity=0.033  Sum_probs=191.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHH-HHHHHHHHHHH
Q 007555          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPA-YICLNTVQAAA  225 (598)
Q Consensus       148 ~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~v-mi~~d~~q~~~  225 (598)
                      ....++++.+++.++..+....+|.++.+..+ |...+++......+...+++++.|.+.||++|||. ++.+.+.-.+ 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~-   94 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVL-   94 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-
Confidence            46789999999999999999999999988888 99999998766677778888888888999988875 5555442111 


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~  305 (598)
                         .+.  .+....     +  .+.+++...+.+.......+..+. +-+||.    +++ +.+....|+..+....++.
T Consensus        95 ---~~~--~~~~~~-----~--~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~-~~~~~~~~~~~~~~~~lg~  156 (393)
T PRK15011         95 ---ACT--LFAWNR-----N--YFVLLFVGVFLSSFGSTANPQMFA-LAREHA----DKT-GREAVMFSSFLRAQVSLAW  156 (393)
T ss_pred             ---HHH--HHHHhh-----H--HHHHHHHHHHHHHHHHhhHHHHHH-HHHHHh----hhc-cchHHHHHHHHHHHHHHHH
Confidence               111  111111     1  123333333445555544444332 223322    221 1234567889998999999


Q ss_pred             HhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHH
Q 007555          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA  385 (598)
Q Consensus       306 i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (598)
                      ++||.++|.+...+|............   +...+   +....+  |+.+++++.         +. .+        .++
T Consensus       157 ~~g~~i~~~l~~~~gw~~~f~~~~~~~---~~~~~---~~~~~~--~~~~~~~~~---------~~-~~--------~~~  210 (393)
T PRK15011        157 VIGPPLAYALAMGFSFTVMYLSAAVAF---IVCGV---MVWLFL--PSMRKELPL---------AT-GT--------LEA  210 (393)
T ss_pred             HHhhHHHHHHHHhcChHHHHHHHHHHH---HHHHH---HHHhhc--CccCCCCcc---------cc-cc--------ccc
Confidence            999999999988777654333222111   11111   111111  211100000         00 00        000


Q ss_pred             HHHHHHHHhcC-CchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007555          386 IKLGWKEYMQQ-PVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (598)
Q Consensus       386 i~eG~~~~~~~-pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r  463 (598)
                             ..++ +.....+....+.+.....+...++.|++ +.|+++.+.|.+.+...++++++.++.+++.+|+|..+
T Consensus       211 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~  283 (393)
T PRK15011        211 -------PRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF  283 (393)
T ss_pred             -------cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence                   1112 21222222222222221223345666776 47999999999988888888899999999999999876


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          464 AGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       464 ~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      ....+......   ........++    ....+....+.....|  ........+.|+..|+ ++|+.++..+...++..
T Consensus       284 ~~~~~~~~~~~---~~~~~~~~~~----~~~~l~~~~l~~~~~g--~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~  353 (393)
T PRK15011        284 LMRVAAVAGVC---FYAGMLMAHS----PAILLGLQLLNAIYIG--ILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGW  353 (393)
T ss_pred             HHHHHHHHHHH---HHHHHHHHhh----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHH
Confidence            55433221111   1111111111    1111111011111111  1122334667888885 59999999887766653


Q ss_pred             -HHHHHhhhhccC
Q 007555          544 -SVMLGVAIIAND  555 (598)
Q Consensus       544 -ll~~~~~i~~~~  555 (598)
                       +.+.+.|++.+.
T Consensus       354 ~~g~~l~G~i~~~  366 (393)
T PRK15011        354 IIAGSLAGIVAEI  366 (393)
T ss_pred             HHHHHHHHHHHHH
Confidence             455565766543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.65  E-value=1.1e-12  Score=144.05  Aligned_cols=374  Identities=11%  Similarity=0.020  Sum_probs=189.9

Q ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          150 YALYACCLAGNLVEQLWN----FAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       150 ~~L~~gq~lS~~G~~i~~----fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      +.++.+.++...+..+.+    +++|.+. +. + |....++...+..+...+.+|+.|.+.||++||++++.+.++..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~-~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i  105 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  105 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence            456677777777766653    4566444 44 7 999999999999999999999999999999999999877654332


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                      .    +....+....   ..+  .+.+++..++.|..+....+.....+. +|    .++   ++..++++.......++
T Consensus       106 ~----~~~~~~~~~~---~~~--~~~~~~~~~l~gi~~g~~~~~~~~~~~-~~----~~~---~~r~~~~~~~~~~~~~g  168 (452)
T PRK11273        106 V----MLFMGFVPWA---TSS--IAVMFVLLFLCGWFQGMGWPPCGRTMV-HW----WSQ---KERGGIVSVWNCAHNVG  168 (452)
T ss_pred             H----HHHHHhhhcc---ccc--HHHHHHHHHHHHHHHhccchHHHHHHH-Hh----CCh---HHHHHHHHHHHHHHHhh
Confidence            2    1111111000   011  223444445556555554443322221 22    232   36788898887777776


Q ss_pred             H-HhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-cccccccCCCCCCCCCCCccchhhh
Q 007555          305 E-IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRA-KCSQSCCRTSNEGPVPDADNIVDVG  382 (598)
Q Consensus       305 ~-i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  382 (598)
                      . +.||++++.+....+....+.+....   .++..++..+.+.    +.++.. .++.++.+++..++..+.+. .+  
T Consensus       169 ~~~~~~l~~~~~~~~~gw~~~f~i~~~~---~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--  238 (452)
T PRK11273        169 GGLPPLLFLLGMAWFNDWHAALYMPAFA---AILVALFAFAMMR----DTPQSCGLPPIEEYKNDYPDDYNEKHE-QE--  238 (452)
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHH---HHHHHHHHHHHcc----CCHhhcCCCChhhhhhccccccccccC-CC--
Confidence            4 66776654443323433222222111   1111111111111    101100 00000000000000000000 00  


Q ss_pred             HHHHHHHH-HHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007555          383 IEAIKLGW-KEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (598)
Q Consensus       383 ~~~i~eG~-~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg  460 (598)
                       .+.++.+ +..+++|.++.......+.+.........++.|+.+ .|+++...|......+++++.|.++++++.+|++
T Consensus       239 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~  317 (452)
T PRK11273        239 -LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF  317 (452)
T ss_pred             -ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             1123333 335678877654433333222212345567778876 6999999999888999999999999999999884


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHH
Q 007555          461 ILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVAS  540 (598)
Q Consensus       461 ~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~  540 (598)
                      ..|......... .+...+...++..... .......  .+.+...+..........+.++..|++.+|+++|..+++..
T Consensus       318 ~~r~~~~~~~~~-~l~~~~~~~~~~~~~~-~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  393 (452)
T PRK11273        318 RGNRGATGVFFM-TLVTIATIVYWLNPAG-NPTVDMA--CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY  393 (452)
T ss_pred             cCCcchHHHHHH-HHHHHHHHHHHHhccc-ChHHHHH--HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHH
Confidence            322111111100 1111222222221110 1111111  11111111111112223456899999999999999988876


Q ss_pred             HHH-H-HHHHhhhhccCcc
Q 007555          541 LVE-S-VMLGVAIIANDVS  557 (598)
Q Consensus       541 ~~~-l-l~~~~~i~~~~~~  557 (598)
                      +.. + .+.+.|.+.+..+
T Consensus       394 ~g~~~~g~~v~g~l~~~~g  412 (452)
T PRK11273        394 LGGSVAASAIVGYTVDFFG  412 (452)
T ss_pred             HHHHHhhhhhHHHHHHHhc
Confidence            653 3 3556666655433

>PRK10504 putative transporter; Provisional

Probab=99.64  E-value=3.3e-12  Score=140.14  Aligned_cols=371  Identities=12%  Similarity=-0.015  Sum_probs=211.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       146 ~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      ++.++.++.+.++..+...+...++|.+.-+..-|....+.......+...+..|+.|.+.||++|||+++.+.++-.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            44688899999999999999999999998775449999888888888899999999999999999999988664432211


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~  305 (598)
                          ..  ......     +  .+.+++..++.|.......+.....+ .|    ..++   ++..++++..+....+..
T Consensus        89 ----~~--~~~~~~-----~--~~~l~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~---~~~~~~~~~~~~~~~~g~  147 (471)
T PRK10504         89 ----SL--FCALSG-----T--LNELLLARVLQGVGGAMMVPVGRLTV-MK----IVPR---EQYMAAMTFVTLPGQVGP  147 (471)
T ss_pred             ----HH--HHHHhC-----C--HHHHHHHHHHHHhhhHHHHHHHHHHH-HH----HcCH---HHHHHHHHHHHHHHHHHH
Confidence                11  111111     1  23344444555555444444433322 23    2332   377889999999999999


Q ss_pred             HhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCC-----------CCCCCC
Q 007555          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSN-----------EGPVPD  374 (598)
Q Consensus       306 i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~-----------~~~~~~  374 (598)
                      .+||.++|.+....+......++........   .    ..... .|..+..+...+......           .++.+.
T Consensus       148 ~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~---~----~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  219 (471)
T PRK10504        148 LLGPALGGLLVEYASWHWIFLINIPVGIIGA---I----ATLML-MPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKG  219 (471)
T ss_pred             HhhhHHHHHHHhhccHHHHHHHHHHHHHHHH---H----HHHHh-CCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCc
Confidence            9999999999987775433333222111111   1    11111 111100000000000000           000000


Q ss_pred             Cccchhhh---------------HHHH-----HHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhH
Q 007555          375 ADNIVDVG---------------IEAI-----KLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSI  433 (598)
Q Consensus       375 ~~~~~~~~---------------~~~i-----~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~  433 (598)
                      ........               +++-     +-.++ ++++|.++..+...+++...........+.|++ ..|.++..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  298 (471)
T PRK10504        220 LGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLK-LFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH  298 (471)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            00000000               0000     00222 466777766555444443322233345555666 48999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhh
Q 007555          434 IGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDI  513 (598)
Q Consensus       434 iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl  513 (598)
                      .|+.....+++++.+..+.+++.+|+|..+....+....   .+.+....+.... . ... .+....++..++......
T Consensus       299 ~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~---~~~~~~~~~~~~~-~-~~~-~~~~~~~~~g~~~~~~~~  372 (471)
T PRK10504        299 AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGL---ALVSLLFMLVALL-G-WYY-LLPFVLFLQGMVNSTRFS  372 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH---HHHHHHHHhcccc-c-cHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999877655443211   1111111111111 1 111 111112222233334456


Q ss_pred             hhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhh
Q 007555          514 VGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAII  552 (598)
Q Consensus       514 ~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~  552 (598)
                      ..+.+.++.+|++.+|+.+|+.+..+++.. +++.+.+.+
T Consensus       373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            777889999999999999999988887774 333333433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.63  E-value=6.8e-13  Score=146.09  Aligned_cols=369  Identities=8%  Similarity=-0.013  Sum_probs=192.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          150 YALYACCLAGNLVEQLWNFAWPSAIA---LLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       150 ~~L~~gq~lS~~G~~i~~fAlpL~v~---~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      +.++.+-++....+..+.++++.+..   ...+ |....+.......+-..+.+|+.|.++||++||++++.+.++..+.
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~   97 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLG   97 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHH
Confidence            44556666655544444454444443   3344 7677777766666667889999999999999999998776543221


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHH-HHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVL-VLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~-~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                          +.+..+.  .     +  .+.+++.. ++.|.....+.+.....+ .+|.    ++    +..++++.......+.
T Consensus        98 ----~~~~~~~--~-----~--~~~l~~~~~~l~G~~~~~~~~~~~~~~-~~~~----~~----~r~~a~g~~~~~~~~g  155 (455)
T TIGR00892        98 ----MILASFS--S-----N--VIELYLTAGFITGLGLAFNFQPSLTML-GKYF----YR----RRPLANGLAMAGSPVF  155 (455)
T ss_pred             ----HHHHHHh--h-----h--HHHHHHHHHHHHHhcchhhhhHHHHHH-HHHH----Hh----hHHHHHHHHHhcccHH
Confidence                1111121  1     1  12233222 233433333222222222 3443    22    5678999999999999


Q ss_pred             HHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHH
Q 007555          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (598)
Q Consensus       305 ~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (598)
                      ..+||.++|.+....|......+.....+..   .+ ..++..+. ++..++.+++.+. ... .....+ +....+..+
T Consensus       156 ~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~---~v-~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~  227 (455)
T TIGR00892       156 LSTLAPLNQYLFESFGWRGSFLILGGLLLHC---CV-CGALMRPV-GPSQRVSKSKSKE-GLP-PDGSTK-KLSKKSTAE  227 (455)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHH---HH-HHHHhCCC-Ccccccccccccc-cCC-CCCccc-cccccchhh
Confidence            9999999999988777554333322211111   11 11122111 0000000000000 000 000000 000011123


Q ss_pred             HHHHH--HHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Q 007555          385 AIKLG--WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL--G  460 (598)
Q Consensus       385 ~i~eG--~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrl--g  460 (598)
                      +.++.  ++ ++++|.++..+....+.+.........++.|+.+.|+++...|.+.+..+++++++..+.+++.+|.  +
T Consensus       228 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~  306 (455)
T TIGR00892       228 KINRFLDFS-LFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR  306 (455)
T ss_pred             hhhhhcchH-HhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            33332  33 5678876654333322222212233456678778899999999999999999999998888887653  3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHH
Q 007555          461 ILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVAS  540 (598)
Q Consensus       461 ~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~  540 (598)
                      ..+...+....  .+..++........   ....+  ....++..++.........++.++.+|++++|+..|+.++..+
T Consensus       307 ~~~~~~~~~~~--~~~~l~~ll~~~~~---~~~~~--~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  379 (455)
T TIGR00892       307 PHVQYLFSFAL--LFNGLTHLLCALAG---DYTGL--VIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVEC  379 (455)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHhc---hHHHH--HHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHH
Confidence            33222221110  11111111111111   11111  1112222334445567788899999999999999999999988


Q ss_pred             HHH-HHHHHhhhhccCc
Q 007555          541 LVE-SVMLGVAIIANDV  556 (598)
Q Consensus       541 ~~~-ll~~~~~i~~~~~  556 (598)
                      +.. ..+.+.|.+.+..
T Consensus       380 lg~~igp~i~G~l~~~~  396 (455)
T TIGR00892       380 CAVLIGPPLAGRLVDAT  396 (455)
T ss_pred             HHHHccccceeeeehhc
Confidence            875 4445556665544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.63  E-value=1.5e-12  Score=142.53  Aligned_cols=370  Identities=14%  Similarity=0.048  Sum_probs=214.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHH
Q 007555          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (598)
Q Consensus       148 ~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~  227 (598)
                      .+..+..+.++..++..+...++|.+..+...|....+.......++.++..|+.|.+.||++||++++.+.++..+.  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~--   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG--   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH--
Confidence            356778899999999999999999998777668889999999999999999999999999999999998776543222  


Q ss_pred             HHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHh
Q 007555          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (598)
Q Consensus       228 ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~  307 (598)
                        ..  .....     .+  .+.+++.-++.|.......+.....+ .|    ..++   ++..++++.......++..+
T Consensus        81 --~~--~~~~~-----~~--~~~l~~~~~~~G~~~~~~~~~~~~~i-~~----~~~~---~~r~~~~~~~~~~~~~g~~~  141 (485)
T TIGR00711        81 --SL--LCGVA-----PN--LELMIIFRVIQGFGGGPLIPLSFSTL-LN----IYPP---EKRGRAMAIWGLTVLVAPAL  141 (485)
T ss_pred             --HH--HHhCc-----CC--HHHHHHHHHHHHhhhhhHHHHHHHHH-HH----HCCH---HHHHHHHHHHHHHHHHHhhh
Confidence              11  11111     11  23344444455555554444443322 23    3443   37889999999999999999


Q ss_pred             hHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc-cccC-------------CCCCCCCC
Q 007555          308 GASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQ-SCCR-------------TSNEGPVP  373 (598)
Q Consensus       308 GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~-~~~~-------------~~~~~~~~  373 (598)
                      ||.++|.+....+......+.....+...   .+. +..  .  ++.++++..+ +...             ..++++..
T Consensus       142 g~~~~~~l~~~~~w~~~f~~~~~~~~~~~---~~~-~~~--~--~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~  213 (485)
T TIGR00711       142 GPTLGGWIIENYHWRWIFLINVPIGIIVV---VVA-FFI--L--PRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPER  213 (485)
T ss_pred             hhccHhHhccCcCceehhhhhhHHHHHHH---HHH-HHH--c--CCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            99999999887775443333322111111   100 111  1  1111100000 0000             00000000


Q ss_pred             CCccchhhhH---------------HHHH-----HHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChh
Q 007555          374 DADNIVDVGI---------------EAIK-----LGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPS  432 (598)
Q Consensus       374 ~~~~~~~~~~---------------~~i~-----eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~  432 (598)
                      +..+ .+...               ++.+     ..++ .+++|.+........+...........++.|+.+ .|+++.
T Consensus       214 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~  291 (485)
T TIGR00711       214 GWFD-SNEILILSITGLVAIIAFVVWELTDDNPLVDLR-LFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTAL  291 (485)
T ss_pred             CCCC-chHHHHHHHHHHHHHHHHHHHHHcCCCCccCHH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            0000 00000               0000     0112 3455554443333222222112233455667765 799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHhhhhhhh
Q 007555          433 IIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW-SGSLSQQNPLLFFLCLIVLSRLGHMSY  511 (598)
Q Consensus       433 ~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~-~g~~~~~~~~~~~~~~i~lsr~Gl~~f  511 (598)
                      +.|......+++.++|..+.+++.+|+|..+....+..    +...+..... ...+.  ..........++..+|...+
T Consensus       292 ~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~g~~~~  365 (485)
T TIGR00711       292 QAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLI----LYAVGFYWRAFTFTPD--TPFLAIALPQFIRGFGMGCF  365 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHH----HHHHHHHHHhccCCCC--CCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998665443322    1122222111 11111  11111111233344455455


Q ss_pred             hhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhcc
Q 007555          512 DIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAN  554 (598)
Q Consensus       512 dl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~  554 (598)
                      ..+.....|+.+|++++|+++|+.+...++.. ++..+.+.+..
T Consensus       366 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       366 FMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777888999999999999999999887774 33444454443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=99.62  E-value=7.1e-13  Score=139.64  Aligned_cols=354  Identities=15%  Similarity=0.057  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHH
Q 007555          150 YALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS  229 (598)
Q Consensus       150 ~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls  229 (598)
                      ...+...+....+...+.+..|.+.....-|....+.......+..++.+++.|.++||++||++++.+.++..+.    
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~----   95 (398)
T TIGR00895        20 ILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVF----   95 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH----
Confidence            3344455555555666666677666554338888999998889999999999999999999999998776543322    


Q ss_pred             HHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhH
Q 007555          230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA  309 (598)
Q Consensus       230 ~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP  309 (598)
                      ..  ......     +  .+.+++..++.|.......+.....+ .|    ..++   ++..++++.......+..++||
T Consensus        96 ~~--~~~~~~-----~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~----~~~~---~~r~~~~~~~~~~~~~g~~~~~  158 (398)
T TIGR00895        96 TL--LCALAT-----N--VTQLLILRFLAGLGLGGLMPNLNALV-SE----YAPK---RFRGTAVGLMFCGYPIGAAVGG  158 (398)
T ss_pred             HH--HHHHcc-----c--hHHHHHHHHHHhcccccchhhHHHHH-HH----HcCH---HhhchhHhhHhhHHHHHHHHHH
Confidence            11  111111     1  13334444445544444444333222 23    3333   3678999999999999999999


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc-----------ccCCCCCCCCCCCccc
Q 007555          310 SLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQS-----------CCRTSNEGPVPDADNI  378 (598)
Q Consensus       310 ~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~  378 (598)
                      .++|.+....+......+.....   .....+..+.+.+  .+.....+++++           ..++. +.+.++.+ .
T Consensus       159 ~~~~~l~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~  231 (398)
T TIGR00895       159 FLAGWLIPVFGWRSLFYVGGIAP---LLLLLLLMRFLPE--SIDFLVSKRPETVRRIVNAIAPQMQAEA-QSALPEQK-A  231 (398)
T ss_pred             HHHHHHhhcccceeehhhhhhHH---HHHHHHHHHhCCC--CChHHHhcCHHHHHHHHHHHHHhccccc-cccccccc-c
Confidence            99999988766443222221111   1111111011110  000000000000           00000 00000000 0


Q ss_pred             hhhhHHHHHHHHHHHhcCCchHHHHHHHHHHH---HhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          379 VDVGIEAIKLGWKEYMQQPVLPASLAYVLLCL---NVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYL  455 (598)
Q Consensus       379 ~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~---~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l  455 (598)
                      .+   ++.++-++..++++..+....+...++   .........++.+..+.|+++...|...+..++++++|.++.+++
T Consensus       232 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l  308 (398)
T TIGR00895       232 TQ---GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWL  308 (398)
T ss_pred             cc---chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00   111223333444443333222211111   110112223344445689999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHH
Q 007555          456 VRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTE  535 (598)
Q Consensus       456 ~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~  535 (598)
                      .+|+|..+.........    ..+........  +....+.   ..++.+++.........++.++.+|+++||++.|+.
T Consensus       309 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  379 (398)
T TIGR00895       309 ADRLGPRVTALLLLLGA----VFAVLVGSTLF--SPTLLLL---LGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWA  379 (398)
T ss_pred             HhhcchHHHHHHHHHHH----HHHHHHHHHhh--CHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            99998653322211111    11111111011  1111111   122223334455667789999999999999999999


Q ss_pred             HHHHHHHH
Q 007555          536 ISVASLVE  543 (598)
Q Consensus       536 ~sl~~~~~  543 (598)
                      .+...+..
T Consensus       380 ~~~~~~g~  387 (398)
T TIGR00895       380 IGIGRLGA  387 (398)
T ss_pred             HHHHHHHH
Confidence            99887775

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.61  E-value=4.8e-12  Score=132.10  Aligned_cols=333  Identities=12%  Similarity=0.001  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Q 007555          167 NFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSM  246 (598)
Q Consensus       167 ~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~  246 (598)
                      ..-.|.+..+..-|...++....+..+...+..|+.|.++||++||+++..+.++..+.    +.  ......     + 
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~----~~--~~~~~~-----~-   90 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG----FT--FYAIAD-----S-   90 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH----HH--HHHHHH-----H-
Confidence            33444444443339999999999999999999999999999999999998876543322    11  111111     1 


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchhHHHH
Q 007555          247 LLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLK  326 (598)
Q Consensus       247 l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~~~l~  326 (598)
                       .+.+++.-++.|.............+. +|.    ++    +..++++.......+..++++.+.+.+.+..+......
T Consensus        91 -~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~----~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~  160 (377)
T TIGR00890        91 -LAALYLTYGLASAGVGIAYGIALNTAV-KWF----PD----KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFI  160 (377)
T ss_pred             -HHHHHHHHHHHhHHHHHHHHhHHHHHH-HHc----Cc----ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHH
Confidence             133344434444443333222222222 232    22    45688888888877777766666666665555433222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHHHHHHH
Q 007555          327 FAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYV  406 (598)
Q Consensus       327 ~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~  406 (598)
                      +....   ........ +...    ++++++++.+        +.  +.    +    +.+..++..+++|.++......
T Consensus       161 ~~~~~---~~~~~~~~-~~~~----~~~~~~~~~~--------~~--~~----~----~~~~~~~~~~~~~~~~~~~~~~  214 (377)
T TIGR00890       161 YMGII---FLLVIVLG-AFLI----GYPPGQLIKT--------NI--EV----S----VKDYTVWEMLRTPQFWVLYLSF  214 (377)
T ss_pred             HHHHH---HHHHHHHH-HHhe----ecCchhcccc--------Cc--cc----c----hhhhhHHHHHcCccHHHHHHHH
Confidence            22111   11111110 1111    1111100000        00  00    0    0012334456677655432222


Q ss_pred             HH-HHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007555          407 LL-CLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWS  485 (598)
Q Consensus       407 lL-~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~  485 (598)
                      .+ ++.. .......+.|.++.|.++.+.+.+.+..++++++|.++.+++.+|+|..+....+....    ..+......
T Consensus       215 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~----~~~~~~~~~  289 (377)
T TIGR00890       215 FLNAVSG-LLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGIS----AVGMAAMLF  289 (377)
T ss_pred             HHHhHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH----HHHHHHHHH
Confidence            22 2211 12333455576778999999999999999999999999999999999766554433211    111111111


Q ss_pred             cccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccC
Q 007555          486 GSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAND  555 (598)
Q Consensus       486 g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~  555 (598)
                      ...  ......+. ...+..++..........+.++.+|+++||+..|..++...+.. ..+++.+.+.+.
T Consensus       290 ~~~--~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  357 (377)
T TIGR00890       290 IPM--LNDVLFLA-TVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE  357 (377)
T ss_pred             ccc--chhHHHHH-HHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            110  11111111 11111111112233456788999999999999999998887775 455555666543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.60  E-value=9.1e-12  Score=133.16  Aligned_cols=344  Identities=13%  Similarity=0.051  Sum_probs=198.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      .++++..++.++++-.++..+....+|.+..+..-|...+++...+..+...+.+|+.|.+.||++|||++..+-+.-.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~   83 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA   83 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999987655999999999999999999999999999999999988766543221


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                          ...  .... .+    +  .+.+++..++.|.......+.....+. +    ..++   ++..++.+..+..-.+.
T Consensus        84 ----~~~--~~~~-~~----~--~~~l~~~~~l~G~~~~~~~~~~~~~~~-~----~~~~---~~~~~~~~~~~~~~~~g  142 (381)
T PRK03633         84 ----GCA--GLGL-MV----G--FWSWLAWRFVAGIGCAMIWVVVESALM-C----SGTS---RNRGRLLAAYMMVYYLG  142 (381)
T ss_pred             ----HHH--HHHH-hc----c--HHHHHHHHHHHHHHHHHHHHHHHHHHH-H----hCCH---HHHHHHHHHHHHHHHHH
Confidence                111  1111 11    1  234445445555544444443333322 2    2222   36678888888888888


Q ss_pred             HHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHH
Q 007555          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (598)
Q Consensus       305 ~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (598)
                      ..+||.+++.+........ .+....   .... .+  .....+.  +   + ++.+         +++.     ++   
T Consensus       143 ~~~g~~~~~~l~~~~~~~~-~~~~~~---~~~~-~~--~~~~~~~--~---~-~~~~---------~~~~-----~~---  192 (381)
T PRK03633        143 TVLGQLLVSKVSTELMSVL-PWVTGL---VLAA-IL--PLLFTRI--L---N-QQAE---------NHDS-----TS---  192 (381)
T ss_pred             HHHHHHHHhcccccccchH-HHHHHH---HHHH-HH--HHHHhcc--c---C-CCCC---------CCCC-----CC---
Confidence            8888888888765422111 111110   0000 00  0111111  1   0 0000         0000     01   


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 007555          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKA  464 (598)
Q Consensus       385 ~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~  464 (598)
                           ++..+++|.++..+...+............++.|..+.|.++...|...+...+++++|.+..+++.+|++..+.
T Consensus       193 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  267 (381)
T PRK03633        193 -----IWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV  267 (381)
T ss_pred             -----HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH
Confidence                 111345555553322222221111123345667887889999999999999999999999999999999998765


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-
Q 007555          465 GAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-  543 (598)
Q Consensus       465 g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-  543 (598)
                      ...+.....    .+..... ...  ......++.+.     +....-...++...+.+|+++++...+......++.. 
T Consensus       268 l~~~~~~~~----~~~~~~~-~~~--~~~~~~~l~g~-----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~  335 (381)
T PRK03633        268 LRVQVFVVI----LGSIAML-SQA--AMAPALFILGA-----AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSL  335 (381)
T ss_pred             HHHHHHHHH----HHHHHHh-hhH--HHHHHHHHHHH-----HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence            544332221    1111111 100  00111111111     1112224455667788899888888887765554443 


Q ss_pred             HHHHHhhhhccCc
Q 007555          544 SVMLGVAIIANDV  556 (598)
Q Consensus       544 ll~~~~~i~~~~~  556 (598)
                      ..+.+.|.+.+..
T Consensus       336 igp~~~G~l~~~~  348 (381)
T PRK03633        336 LGPSFTAMLMQNY  348 (381)
T ss_pred             HHHHHHHHHHHHh
Confidence            4555667665543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.59  E-value=6.4e-11  Score=131.94  Aligned_cols=359  Identities=13%  Similarity=0.006  Sum_probs=196.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccC-----CchHH-HHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHS-----PRIPA-YICL  218 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~-----~Rr~v-mi~~  218 (598)
                      ++|+...++.-.+.+-+...+..-.+|.+..+.--|...++..... .+|+ ++.++.|.++||+     +|||. +..+
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~-~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~   87 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLV-GQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLAT   87 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHH-HHHHHHHHHHHcccccCCCCchHHHHHH
Confidence            3344555666666777777788888999866653388888887443 4554 5899999999999     78774 5555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHH
Q 007555          219 NTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLN  298 (598)
Q Consensus       219 d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~  298 (598)
                      .+.-.    ++...+.+   ..+ ..+  .+.+++..++.+......+++... .-.|    ..++   ++..++|+...
T Consensus        88 ~i~~~----~~~~~~a~---~~~-~~~--l~~l~~~~~l~~~~~a~~~i~~~a-~~~~----~~~~---~~rg~~~~i~~  149 (491)
T PRK11010         88 QLLLL----VAIAAMGF---LEP-GTQ--LRWLAALAVVIAFCSASQDIVFDA-WKTD----VLPA---EERGAGAAISV  149 (491)
T ss_pred             HHHHH----HHHHHHHH---cCC-cch--HHHHHHHHHHHHHHHHHHHHHHHH-HHHH----hcCh---hhhHHHHHHHH
Confidence            43211    11111111   111 111  233444444555555555555433 2234    3443   36889999999


Q ss_pred             HHHHHHHHhhHHHHHHHHh-hhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCcc
Q 007555          299 RIDLLCEIAGASLFGILLS-KYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADN  377 (598)
Q Consensus       299 ~id~~~~i~GP~lgGlL~s-~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~  377 (598)
                      ....+..++||.+++.+.. ..|......+.+...   ++..+    ....+  +++++.++.            ++   
T Consensus       150 ~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~---ll~~l----~~~~~--~e~~~~~~~------------~~---  205 (491)
T PRK11010        150 LGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALL---IPCII----ATLLA--PEPTDTIPV------------PK---  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH---HHHHH----HHHhc--CCCcccccc------------cc---
Confidence            9999999999999999988 456544333322211   11111    11111  211110000            00   


Q ss_pred             chhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHH-HHHHHHHHHHHHHHHHH
Q 007555          378 IVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFS-GLCASMGVAATFLSAYL  455 (598)
Q Consensus       378 ~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~-g~gavgGLlGtl~~~~l  455 (598)
                         +..+...+.++.++++|.....+....++...........++|+. +.|+++.++|... ..+.+++++|+++.+++
T Consensus       206 ---~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L  282 (491)
T PRK11010        206 ---TLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGIL  282 (491)
T ss_pred             ---chhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               000112344555666665443333333332211123345666765 5899999999998 47778999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHH
Q 007555          456 VRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTE  535 (598)
Q Consensus       456 ~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~  535 (598)
                      .+|+|..|....+...+.... ++......... + ...  +...+.+..+..-........+.++.+|++..|+..|+.
T Consensus       283 ~dr~g~~~~l~i~~~l~~l~~-l~~~~l~~~~~-~-~~~--l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~  357 (491)
T PRK11010        283 MQRLSLFRALMIFGILQGVSN-AGYWLLSITDK-N-LYS--MGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALL  357 (491)
T ss_pred             HHHHhHHHHHHHHHHHHHHHH-HHHHHHHhccc-c-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            999998775543322221111 11011111111 1 111  111111100000112234567788888999999999998


Q ss_pred             HHHHHHHH-HHHHHhhhhccC
Q 007555          536 ISVASLVE-SVMLGVAIIAND  555 (598)
Q Consensus       536 ~sl~~~~~-ll~~~~~i~~~~  555 (598)
                      +++..+.. ..+.+.|.+.+.
T Consensus       358 ~s~~~lg~~~~~~~~G~l~~~  378 (491)
T PRK11010        358 SALSAVGRVYVGPVAGWFVEA  378 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            88887664 455566666553

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.59  E-value=2.1e-11  Score=130.68  Aligned_cols=351  Identities=12%  Similarity=0.056  Sum_probs=202.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHH
Q 007555          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (598)
Q Consensus       148 ~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~  227 (598)
                      +++.++.+.+.-..+..+..--+|.|..+.--|..++++......+...+.+|+.|.+.||++|++..+..-..  .. +
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~--~~-~   81 (382)
T TIGR00902         5 PFRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLAL--AS-A   81 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH--HH-H
Confidence            45667777777777777766667788866533999999998888999999999999999999985432211100  00 0


Q ss_pred             HHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHh
Q 007555          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (598)
Q Consensus       228 ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~  307 (598)
                      +. .+ .+....    ++  .+.+++..++.+.......+.... +-++|         +++..++-+..+..-.++.++
T Consensus        82 l~-~~-~~~~~~----~~--~~~l~~~~~l~~~~~~~~~p~~~a-l~~~~---------~~~~~~~~g~~~~~~slG~~~  143 (382)
T TIGR00902        82 IF-AA-AFSAGA----HN--AWLLFIAIGLFALFFSAGMPIGDA-LANTW---------QKQFGLDYGKVRLIGSAAFII  143 (382)
T ss_pred             HH-HH-HHHHhh----hh--HHHHHHHHHHHHHHHccchhHHHH-HHHHH---------HHHcCCCccHHHHHHHHHHHH
Confidence            00 11 111111    11  233333333333333322222221 11221         124456778888888999999


Q ss_pred             hHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHH
Q 007555          308 GASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIK  387 (598)
Q Consensus       308 GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  387 (598)
                      ||.++|.+...+|..........   . .....    ....+ .+.+++  +++++      ++  +     ...    .
T Consensus       144 g~~l~g~l~~~~g~~~~f~~~~~---~-~~~~~----~~~~~-~~~~~~--~~~~~------~~--~-----~~~----~  195 (382)
T TIGR00902       144 GSALFGGLIGMFDEQNILAILTA---G-LAFML----IGFLI-KPTIPP--KDAIP------ED--E-----SQG----D  195 (382)
T ss_pred             HHHHHHHHHHHcChhHHHHHHHH---H-HHHHH----HHHHc-CCCCCC--Ccccc------cc--c-----ccc----c
Confidence            99999999998886543222111   1 11011    11111 121111  00000      00  0     000    1


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007555          388 LGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAA  467 (598)
Q Consensus       388 eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~  467 (598)
                      +.++.++|+|.+...+....+.......+.+..+.|+++.|+++..+|...+.++++.+++.+..+++.||+|..+...+
T Consensus       196 ~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~  275 (382)
T TIGR00902       196 SAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLI  275 (382)
T ss_pred             hhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHH
Confidence            23455778887765444444333222345566777888899999999999999999999999999999999998876654


Q ss_pred             HHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH--HH
Q 007555          468 GLIFQASLLAMAVAVY-WSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV--ES  544 (598)
Q Consensus       468 ~l~~q~~~L~~~v~~~-~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~--~l  544 (598)
                      +....    ......+ ...+      .+.+.....+-.+....+.....+++|+. |++++++..++.+++.++.  ..
T Consensus       276 ~~~~~----~~~~~~~~~~~~------~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~  344 (382)
T TIGR00902       276 SAIAC----VGRWAIIGAIEA------FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAI  344 (382)
T ss_pred             HHHHH----HHHHHHHHhHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHH
Confidence            43322    1111111 1111      11111122222233335667788899988 9999999999987665554  34


Q ss_pred             HHHHhhhhccCcch
Q 007555          545 VMLGVAIIANDVSH  558 (598)
Q Consensus       545 l~~~~~i~~~~~~~  558 (598)
                      ++.+.|.+.+....
T Consensus       345 g~~~~G~l~~~~g~  358 (382)
T TIGR00902       345 FTAFAGFIYPTLGA  358 (382)
T ss_pred             HHHHHHHHHHhccH
Confidence            56777877776654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.57  E-value=3.8e-11  Score=129.84  Aligned_cols=352  Identities=13%  Similarity=0.094  Sum_probs=186.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccC----CchH-HHHHHHHHHHHHHHH
Q 007555          155 CCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS----PRIP-AYICLNTVQAAAQLL  228 (598)
Q Consensus       155 gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~----~Rr~-vmi~~d~~q~~~v~l  228 (598)
                      |++-......+...=++.|..+..+ |+..+|+...+..+...+..|+.|.+.||.    .||| .+..+-+.-    ++
T Consensus         7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~----~i   82 (437)
T TIGR00792         7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPF----SI   82 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHH----HH
Confidence            4444555555555556677777788 999999999999999999999999999984    4434 554443221    11


Q ss_pred             HHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhh
Q 007555          229 SAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (598)
Q Consensus       229 s~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~G  308 (598)
                      +..+ .+.  .+..+........++..++.+....+.++.+..     +.+.+.++  +++..++++..+....+..+++
T Consensus        83 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-----l~~~~~~~--~~~R~~~~~~~~~~~~~g~~l~  152 (437)
T TIGR00792        83 VLVL-LFT--TPDFSATGKLVYAYITYILLGLFYSFVNIPYWS-----LVPAITLD--PRERESLSTFRRFGATLGGLLV  152 (437)
T ss_pred             HHHH-HHh--CCCCCcchHHHHHHHHHHHHHHHHHhhcccHhh-----CcccccCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence            2222 221  111001111111222233445555555544433     23335542  3478899999888888888888


Q ss_pred             HHHHHHHHhhhch---hHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHH
Q 007555          309 ASLFGILLSKYEP---VTCLKFAAG-LIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (598)
Q Consensus       309 P~lgGlL~s~~~~---~~~l~~~~~-~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (598)
                      +.+++.++...+.   .......+. ..+...+..+   .....+  ++  ++++.++       ++ ++     +   .
T Consensus       153 ~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~---~~~~~~--~e--~~~~~~~-------~~-~~-----~---~  209 (437)
T TIGR00792       153 AVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI---ICFFGT--KE--RYSEIPK-------NI-EK-----K---L  209 (437)
T ss_pred             HHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH---HHHcCC--Ee--cCCCCCc-------cc-cc-----C---C
Confidence            8877777754331   111111111 1111111111   111111  11  1100000       00 00     0   1


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007555          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (598)
Q Consensus       385 ~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r  463 (598)
                      ++++.++..+++|.++..+...+++......+....+.|.+. .+ ++...+.+.+...+++++++.+.+++.+|+|..+
T Consensus       210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~  288 (437)
T TIGR00792       210 SLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI  288 (437)
T ss_pred             CHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            246678888899987765444333322211222233334433 34 5667888888889999999999999999999877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCC-------CccchhHHHHHH
Q 007555          464 AGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIP-------SSKANLIGTTEI  536 (598)
Q Consensus       464 ~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP-------~~~rGRV~sv~~  536 (598)
                      ...++....    ..+...++... . ....  +....++..++....+....+++++.+|       ++.+|+.+|+.+
T Consensus       289 ~~~~~~~~~----~~~~~~~~~~~-~-~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  360 (437)
T TIGR00792       289 LFAGGILLM----VLGYLIFFFAG-S-NLPL--ILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRT  360 (437)
T ss_pred             HHHHHHHHH----HHHHHHHHHcc-h-hHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHH
Confidence            655443221    11111111111 0 1111  1112222333444456666777777765       567899999999


Q ss_pred             HHHHHHH-HHHHHhhhh
Q 007555          537 SVASLVE-SVMLGVAII  552 (598)
Q Consensus       537 sl~~~~~-ll~~~~~i~  552 (598)
                      ...+... +.+.+.+.+
T Consensus       361 ~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       361 FVRKLGQALAGFLVGLI  377 (437)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            8888775 444444544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.57  E-value=6.7e-12  Score=138.28  Aligned_cols=392  Identities=13%  Similarity=0.030  Sum_probs=204.2

Q ss_pred             CCCCChhhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeec
Q 007555          128 IPVLSEEEQNALAATPAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMD  207 (598)
Q Consensus       128 ~~~~~~~~~~~~~~~~~r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvD  207 (598)
                      .+=++|+|+.... .-.+-+.+..++.+.++..+.......+.|-+..+..-|..+.++...+..+.+.+..|+.|.++|
T Consensus        11 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D   89 (467)
T PRK09556         11 TLDLPLEVQRKMW-FKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD   89 (467)
T ss_pred             ccCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh
Confidence            3345666655442 000112344566666666667777888888766554449999999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCch
Q 007555          208 HSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRP  287 (598)
Q Consensus       208 R~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~  287 (598)
                      |++|||++..+-++-.+...+. +.+..  ...   .+  .+.+++.-++.|..+.++.++.... -.+|.|    ++  
T Consensus        90 r~g~r~~l~~~~~~~~~~~~~~-~~~~~--~~~---~~--~~~l~~~r~l~G~~~~~~~~~~~~~-i~~~~~----~~--  154 (467)
T PRK09556         90 GKNTKQFLPFLLILSAICMLGF-GASLG--SGS---VS--LGLMIALWALSGFFQSTGGPCSYST-ITRWTP----RR--  154 (467)
T ss_pred             ccCccchHHHHHHHHHHHHHHH-HHHHh--ccc---ch--HHHHHHHHHHHHHHHhccchHHHHH-HHHHcC----cc--
Confidence            9999999876654322221111 11000  010   11  2344454556676666666555443 345544    22  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh---chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--cccc
Q 007555          288 IALAKANAVLNRIDLLCEIAGASLFGILLSKY---EPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAK--CSQS  362 (598)
Q Consensus       288 ~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~---~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~--~~~~  362 (598)
                       +..++++.......+..++||.++..+....   +....+.+..   +..++..++ .+...+   +.+++.+  +.++
T Consensus       155 -~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g---~~~~~~~i~-~~~~~~---~~p~~~~~~~~~~  226 (467)
T PRK09556        155 -KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPS---IIALIIGFI-GLRYGS---DSPEELGWGKAEE  226 (467)
T ss_pred             -ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHH---HHHHHHHHH-HHHhCC---CChhhcCCCChhh
Confidence             5678888887777777777777776655432   1111111111   111111111 111111   1111100  0000


Q ss_pred             ccCCCCCCCCCCCccchhhhHHHHHHH-HHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHH
Q 007555          363 CCRTSNEGPVPDADNIVDVGIEAIKLG-WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGL  440 (598)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~i~eG-~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~  440 (598)
                      ..++.  ...++..+..++ . ..++- .++.+++|.+........+.+.....+...++.|+.+ .|+++.+.+.....
T Consensus       227 ~~~~~--~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~  302 (467)
T PRK09556        227 IFGEP--ISEEDKETESTD-M-TKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTL  302 (467)
T ss_pred             cccCc--cchhhhcccccc-C-cHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence            00000  000000000000 0 01121 2346788766543333222222212344567778875 79999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 007555          441 CASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQ  520 (598)
Q Consensus       441 gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q  520 (598)
                      ..+++++|.++.+++.+|++..+...........  ......+....  +.....+.   ..+.+++.............
T Consensus       303 ~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~---~~~~G~~~~~~~~~~~~~~~  375 (467)
T PRK09556        303 FEIGALVGSLLWGWLSDLANGRRALVACIALALI--IFTLGVYQHAT--SEYMYLAS---LFALGFLVFGPQLLIGVAAV  375 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH--HHHHHHHHhcC--cHHHHHHH---HHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999999876554332211111  11111111111  11111111   11111111111112234566


Q ss_pred             ccCCCccchhHHHHHHHHHHH-H-HHHHHHhhhhcc
Q 007555          521 TGIPSSKANLIGTTEISVASL-V-ESVMLGVAIIAN  554 (598)
Q Consensus       521 ~~VP~~~rGRV~sv~~sl~~~-~-~ll~~~~~i~~~  554 (598)
                      +..|++.+|++.|+.++..++ . ...+++.|.+.+
T Consensus       376 ~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        376 GFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            999999999999999999885 3 356677777766

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.55  E-value=2.3e-11  Score=131.03  Aligned_cols=354  Identities=12%  Similarity=0.036  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 007555          165 LWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSS  244 (598)
Q Consensus       165 i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~  244 (598)
                      ....++|.+..+..-|..+++....+..+...+.+|+.|.+.||++||+++..+-.+-.+.      .+...+..     
T Consensus        27 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~------~~~~~~a~-----   95 (393)
T PRK09705         27 SVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG------ALMRELYP-----   95 (393)
T ss_pred             ccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH------HHHHHHCc-----
Confidence            3445566655544338888999999999999999999999999999999998776543222      11111111     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh-chhH
Q 007555          245 SMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKY-EPVT  323 (598)
Q Consensus       245 ~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~-~~~~  323 (598)
                      +  .+.+++.-++.|.......+..... .++|.    ++    +..++++...........+||.+++.+.... +...
T Consensus        96 ~--~~~ll~~r~l~Gig~~~~~~~~~~~-~~~~~----~~----~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~  164 (393)
T PRK09705         96 Q--SALLLSSALLGGVGIGIIQAVMPSV-IKRRF----QQ----RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ  164 (393)
T ss_pred             c--hHHHHHHHHHHHhHHHHHhhhhhHH-HHHHc----cc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            1  2344555555566555555444332 23432    22    4578899888878888888888888887754 4332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHH-H
Q 007555          324 CLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPA-S  402 (598)
Q Consensus       324 ~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~-~  402 (598)
                      ...+.....   .. .++. +...  .++   +++++ +        +  ++    ...        +..+++|..+. .
T Consensus       165 ~~~~~~~~~---~~-~~~~-~~~~--~~~---~~~~~-~--------~--~~----~~~--------~~~l~~~~~~~l~  211 (393)
T PRK09705        165 TLAWWALPA---VV-ALFA-WWWQ--SAR---EVASS-H--------K--TT----TTP--------VRVVFTPRAWTLG  211 (393)
T ss_pred             HHHHHHHHH---HH-HHHH-HHHH--hcC---CCccc-c--------C--CC----cCC--------cccccCHhHHHHH
Confidence            221111111   11 1110 1111  011   11100 0        0  00    000        01123333322 2


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007555          403 LAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAV  482 (598)
Q Consensus       403 l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~  482 (598)
                      +...+.++.. ..+...++.|+.+.|+++...|...+..++++++|.++.+++.+|.+..+....+....    ..+...
T Consensus       212 ~~~~~~~~~~-~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~----~~~~~~  286 (393)
T PRK09705        212 VYFGLINGGY-ASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ----LVGFCG  286 (393)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH----HHHHHH
Confidence            2222222211 12334566777778999999999999999999999999999999998766655443221    112111


Q ss_pred             -HhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccCcchhH
Q 007555          483 -YWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIANDVSHFG  560 (598)
Q Consensus       483 -~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~~~~f~  560 (598)
                       .+...  .....+.++.++   ..|. .+........|...|++.+|+++|..+++..... ..+.+.|.+.+....+.
T Consensus       287 ~~~~~~--~~~~~~~~l~g~---g~g~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~  360 (393)
T PRK09705        287 FIWLPL--QLPVLWAMVCGL---GLGG-AFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYL  360 (393)
T ss_pred             HHHccc--hHHHHHHHHHHH---hccc-hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence             11111  111111111111   1121 1233344556776678899999999999988775 45566677777655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC
Q 007555          561 FLATLSLLSVVGAAWMFCHWLLNP  584 (598)
Q Consensus       561 ~l~l~S~~~V~~a~~l~~~~l~~~  584 (598)
                      ....+.....+.+.........++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        361 MDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc
Confidence            544444433333333334444443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.54  E-value=4.2e-11  Score=128.56  Aligned_cols=363  Identities=11%  Similarity=0.020  Sum_probs=192.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       146 ~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      +|+|+++...+++=..+-.++.--+|.|+.+..+ |...+++......+..++.+|+.|.++||++|||.++.+.+....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~   80 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLV   80 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            4678888888888888888888888999988777 999999999999999999999999999999999999876654322


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                      .   ......+. .... ..........+..++.+.......++.     .+|++-..++    + .+..+..+....++
T Consensus        81 ~---~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~----~-~~~~g~~~~~~~~g  145 (396)
T TIGR00882        81 L---FAPFFIYV-FGPL-LQSNILVGAIVGGLYLGFVFSAGAGAI-----EAYIEKVSRN----S-NFEYGKARMFGCVG  145 (396)
T ss_pred             H---HHHHHHHH-hhhH-HHHHHHHHHHHHHHHHHHHhccchhhH-----HHHHHHhhhh----c-ccccchhhhhcccH
Confidence            1   11110111 0000 000000011111222233222222222     1232212111    1 12345677777889


Q ss_pred             HHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHH
Q 007555          305 EIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (598)
Q Consensus       305 ~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (598)
                      ..+||.++|.+... +......+....   ..+..+    ..... .++.+++++ .+..     .+.++.    +...+
T Consensus       146 ~~~g~~~~g~l~~~-~~~~~f~~~~~~---~~~~~~----~~~~~-~~~~~~~~~-~~~~-----~~~~~~----~~~~~  206 (396)
T TIGR00882       146 WALCASIAGILFSI-DPQIVFWLGSGF---ALILML----LLMFA-KPKAPSSAT-VANA-----LGANAS----AFSLK  206 (396)
T ss_pred             HHHHHHHHhhhhcc-CchHHHHHHHHH---HHHHHH----HHHHh-CCCCchhhh-hhcc-----cccccC----CCCHH
Confidence            99999999988763 543322222111   111111    11111 111111000 0000     000000    00111


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007555          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ----RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (598)
Q Consensus       385 ~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~----lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg  460 (598)
                          .++.++++|.++..+............+...++.|..+    .+.+...+|...+..++...++.+..+++.+|+|
T Consensus       207 ----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g  282 (396)
T TIGR00882       207 ----LALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIG  282 (396)
T ss_pred             ----HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                23456677765433222222111111233345556553    3666778899999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHH-HHHH
Q 007555          461 ILKAGAAGLIFQASLLAMAVAVY-WSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTT-EISV  538 (598)
Q Consensus       461 ~~r~g~~~l~~q~~~L~~~v~~~-~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv-~~sl  538 (598)
                      ..+....+..    +..++...+ ...++    ..+  .....+..++..........+.++..|++.++...+. .+..
T Consensus       283 ~~~~l~~~~~----l~~l~~~~~~~~~~~----~~~--~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~  352 (396)
T TIGR00882       283 AKNALLIAGT----IMSVRIIGSSFATTA----LEV--VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFA  352 (396)
T ss_pred             cchhHHHHHH----HHHHHHHHHHhcCCh----HHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHH
Confidence            8776544322    111222221 11111    111  1122233344444444566678888999998887665 3333


Q ss_pred             HHHH-HHHHHHhhhhccCc
Q 007555          539 ASLV-ESVMLGVAIIANDV  556 (598)
Q Consensus       539 ~~~~-~ll~~~~~i~~~~~  556 (598)
                      ..+. .+.+.+.|.+.+..
T Consensus       353 ~~lg~~~~~~l~G~l~~~~  371 (396)
T TIGR00882       353 KQLAMIFLSTLAGNMYDSI  371 (396)
T ss_pred             HHHHHHHHHHhHHHHHHhc
Confidence            3333 34556667776654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.52  E-value=1.4e-11  Score=132.61  Aligned_cols=375  Identities=12%  Similarity=0.015  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHH
Q 007555          155 CCLAGNLVEQLWNFAWPSAIALLHPS--------LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (598)
Q Consensus       155 gq~lS~~G~~i~~fAlpL~v~~lt~S--------~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v  226 (598)
                      +.++..+...+...++|.......-+        ....++...+..+...+.+|+.|.+.||++||++++.+.++..+. 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~-  114 (481)
T TIGR00879        36 GGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIG-  114 (481)
T ss_pred             HHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHH-
Confidence            33444555666666777666554434        788899999999999999999999999999999988776543222 


Q ss_pred             HHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHH
Q 007555          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (598)
Q Consensus       227 ~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i  306 (598)
                         +.+..+. ..     ....+.+++.-++.|.......+.....+ .|    ..++   ++..++.+..+....+..+
T Consensus       115 ---~~~~~~~-~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i-~~----~~~~---~~r~~~~~~~~~~~~~G~~  177 (481)
T TIGR00879       115 ---AILMGLA-AF-----ALSVEMLIVGRVLLGIGVGIASALVPMYL-SE----IAPK---ALRGALTSLYQLAITFGIL  177 (481)
T ss_pred             ---HHHHHHh-cc-----ccchHHHHHHHHHHHhhhhHHHhHHHHHH-Hc----cCCh---hhhhhhhhHHHHHHHHHHH
Confidence               1111111 11     11112344444555555444444433322 34    3333   2678899999988899999


Q ss_pred             hhHHHH---HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccccccc--cccCCCCCCCCCCCccch
Q 007555          307 AGASLF---GILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVL--DRAKCSQ--SCCRTSNEGPVPDADNIV  379 (598)
Q Consensus       307 ~GP~lg---GlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l--~~~~~~~--~~~~~~~~~~~~~~~~~~  379 (598)
                      +||.++   +.+....+......+.....+.    ..+..+.+..  .|..  .+.+.++  +..++.+..+.++ ....
T Consensus       178 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~----~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (481)
T TIGR00879       178 VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL----LFLGLFFLPE--SPRWLVGKGRVEEARKSLARLRGTSGED-KELL  250 (481)
T ss_pred             HHHHHHHHhhcCCCCccHHHHHHHHHHHHHH----HHHHHhcCCC--ChHHHHHcCChHHHHHHHHHHhCCCCCc-HHHH
Confidence            999998   5544444433322221111111    1111011110  0000  0000000  0000000000000 0000


Q ss_pred             h--hhHHHH--------HHHHHHHhcC--CchHHHHHHHHHH----HHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHH
Q 007555          380 D--VGIEAI--------KLGWKEYMQQ--PVLPASLAYVLLC----LNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCAS  443 (598)
Q Consensus       380 ~--~~~~~i--------~eG~~~~~~~--pvll~~l~~~lL~----~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gav  443 (598)
                      +  ...+..        +..|+..++.  +.....+....+.    +..........+.+..+.|++....+.......+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  330 (481)
T TIGR00879       251 DELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGA  330 (481)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            0  000000        0012222221  1122222221111    1110011122333445689999888888899999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccc---chhHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 007555          444 MGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQ---QNPLLFFLCLIVLSRLGHMSYDIVGAQILQ  520 (598)
Q Consensus       444 gGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~---~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q  520 (598)
                      ++++|.++.+++.+|+|..+....+......++..............   .....+....+.....+ ..+......+.+
T Consensus       331 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  409 (481)
T TIGR00879       331 VNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFA-MGWGPVPWVIVS  409 (481)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHH-ccccCeehhhhh
Confidence            99999999999999999776655443222111111110001111100   01111111111111111 122344456679


Q ss_pred             ccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccC
Q 007555          521 TGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAND  555 (598)
Q Consensus       521 ~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~  555 (598)
                      +..|++.||+..|+.++..++.. ..+.+.+.+.+.
T Consensus       410 ~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~  445 (481)
T TIGR00879       410 EIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES  445 (481)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998888775 444555555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.51  E-value=5.7e-10  Score=119.56  Aligned_cols=352  Identities=17%  Similarity=0.058  Sum_probs=179.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH--HHHHHHHcccccce-eeccCCchHHHHHHHHHHHHHHHHH
Q 007555          153 YACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFF--SKLILIVGGPLVGK-LMDHSPRIPAYICLNTVQAAAQLLS  229 (598)
Q Consensus       153 ~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~--~~Lp~lL~gp~aGv-lvDR~~Rr~vmi~~d~~q~~~v~ls  229 (598)
                      ..-.+.+-+.-.+..-.+|.|+-+..-|....|+++..  -.+-..+.+|+.+. ..||++|||..+..-  |....+..
T Consensus         7 ~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~--~~~~~~~~   84 (390)
T TIGR02718         7 GLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM--QCLVSACL   84 (390)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH--HHHHHHHH
Confidence            33345556667788888999998774499999998533  35556789999966 689998888754331  22111101


Q ss_pred             HHHHHHHhhhccCCccchHHHHHH-HHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhh
Q 007555          230 AAMIIHAHTVIPTSSSMLLHPWFF-VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAG  308 (598)
Q Consensus       230 ~~~l~~~~~~~~~~~~~l~~~l~v-v~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~G  308 (598)
                        . .... ... ...  ...|+. ...+.+......+++....     .+.-.   ++++....|+.......+..++|
T Consensus        85 --~-~~~~-~~~-~~~--~~~~~~~~~~~~~~~~a~~d~~~d~~-----~~~~~---~~~~~~~~~~~~~~g~~lG~~~g  149 (390)
T TIGR02718        85 --A-SLAL-VGP-DVA--GAGWAVGLLACASLASATQDIATDGM-----AAEHF---NGRTLAKGNAVQIAGVMIGFFGG  149 (390)
T ss_pred             --H-HHHc-CCc-chh--hHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhC---CHhhhhHHHHHHHHHHHHHHHHH
Confidence              1 1110 111 001  011222 2222223333333333211     11111   22355666766665556667777


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHH
Q 007555          309 ASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKL  388 (598)
Q Consensus       309 P~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e  388 (598)
                      +.++|.+.+..|......+..+..+...   .    ..... .++   ++++++          .+     +..    ..
T Consensus       150 ~~~~~~l~~~~gw~~~f~~~a~l~~~~~---~----~~~~~-~~~---~~~~~~----------~~-----~~~----~~  199 (390)
T TIGR02718       150 GAGTLVLFGKFGQRPAFLLVACVPLASL---V----CVLWL-KDR---AVASPE----------AP-----LAR----RA  199 (390)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHH---H----HHHHc-CCC---CcCccc----------cc-----hhh----HH
Confidence            7777778877776543333322221111   1    11111 110   000000          00     010    12


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHH
Q 007555          389 GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCA-SMGVAATFLSAYLVRRLGILKAGAA  467 (598)
Q Consensus       389 G~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~ga-vgGLlGtl~~~~l~rrlg~~r~g~~  467 (598)
                      .++.++|+|.++..+...+++........+...+|+++.|+++.++|.+.+..+ +++++|.++.+++.+|+|..|...+
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~  279 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFIL  279 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            345577888776655554444332123445667788889999999999998876 4677899999999999998877665


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCC-CccchhHHHHHHHHHHHHH-HH
Q 007555          468 GLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIP-SSKANLIGTTEISVASLVE-SV  545 (598)
Q Consensus       468 ~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP-~~~rGRV~sv~~sl~~~~~-ll  545 (598)
                      +....................+ ........  .....++.............+.++ ++.+|+.++..+++.++.. +.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g  356 (390)
T TIGR02718       280 GVGLAGSLALLWFAQAAFWLAP-GIAVAWSC--SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIA  356 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcccCC-cHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHH
Confidence            4433211111111110000000 11111111  111111111222333334333455 4899999999999988775 45


Q ss_pred             HHHhhhhcc
Q 007555          546 MLGVAIIAN  554 (598)
Q Consensus       546 ~~~~~i~~~  554 (598)
                      +.+.|.+.+
T Consensus       357 ~~~~G~l~~  365 (390)
T TIGR02718       357 SSIAGYLTD  365 (390)
T ss_pred             HHHHHHHHH
Confidence            555566654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.51  E-value=3.3e-11  Score=126.68  Aligned_cols=348  Identities=11%  Similarity=-0.003  Sum_probs=189.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       147 r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      |.+...+.+.+++..+...+...+|.++.+..+ |....++...+..+..++.+++.|.+.||++||++++.+.++..+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIP   80 (366)
T ss_pred             CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            457788999999988888888888877777778 9999999999999999999999999999999999988776543222


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~  305 (598)
                          ..+..+..      .+  .+.+++.-++.|.......++. ..+ .||    .++   ++..++++.......++.
T Consensus        81 ----~~~~~~~~------~~--~~~~~~~~~~~g~~~~~~~~~~-~~~-~~~----~~~---~~r~~~~~~~~~~~~~g~  139 (366)
T TIGR00886        81 ----CLWAGLAV------QS--YSVLLLLRLFIGIAGGSFASCM-PWI-SFF----FPK---KIQGTALGLAAGWGNMGG  139 (366)
T ss_pred             ----HHHHHHHh------hh--HHHHHHHHHHHHHhchhhHhHH-HHH-HHh----cCH---hhhhHHHHHHHHHhHHHH
Confidence                11111111      01  1233333344444433333322 222 333    333   367889999888888888


Q ss_pred             HhhHHHHHHHHhhh----------chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCC
Q 007555          306 IAGASLFGILLSKY----------EPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDA  375 (598)
Q Consensus       306 i~GP~lgGlL~s~~----------~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~  375 (598)
                      .+||.+++.+....          +......+..+  +...+...+. +...   ++.+++++++ ++.+..  .   ..
T Consensus       140 ~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~-~~~~---~~~~~~~~~~-~~~~~~--~---~~  207 (366)
T TIGR00886       140 GVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPA--GILLLPALLI-FFVG---ADTPPGKPAT-GKLSFK--G---AR  207 (366)
T ss_pred             HHHHHHHHHHHHHHHhcccccccccccchhHHHHH--HHHHHHHHHH-HHhc---ccCCcccccc-hhcccc--c---cc
Confidence            88888888776632          22211111100  1111111110 1111   1111110000 000000  0   00


Q ss_pred             ccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007555          376 DNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAY  454 (598)
Q Consensus       376 ~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~  454 (598)
                      ....+   ++ .+.++..+++|.++.......+++.....+...++.|+.+ .|+++.+.|.+.....+++++|.++.++
T Consensus       208 ~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  283 (366)
T TIGR00886       208 WSVGT---GA-LGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGA  283 (366)
T ss_pred             ccccc---hh-HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccch
Confidence            00000   11 1133345666665543333333322212445566667764 6999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccc-chhHH--HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhH
Q 007555          455 LVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQ-QNPLL--FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLI  531 (598)
Q Consensus       455 l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~-~~~~~--~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV  531 (598)
                      +.+|+|..+....+....    ..+...+.....+. .....  .+....+....    .......+..+..| +.+|++
T Consensus       284 l~~r~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~-~~~g~~  354 (366)
T TIGR00886       284 ISDRLGGARKLLMSFLGV----AMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGA----GNGSTFALVPHIFR-RATGAV  354 (366)
T ss_pred             HHHhhccchhHHHHHHHH----HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcc----ccchhhhcchhhch-hhcccH
Confidence            999998766554433211    11111111111100 11111  11111111221    22233344555555 699999


Q ss_pred             HHHHHHHHH
Q 007555          532 GTTEISVAS  540 (598)
Q Consensus       532 ~sv~~sl~~  540 (598)
                      .|+.+++.+
T Consensus       355 ~g~~~~~~~  363 (366)
T TIGR00886       355 SGLVGAIGN  363 (366)
T ss_pred             HHHHHHhcc
Confidence            999888765

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.50  E-value=9.7e-11  Score=127.93  Aligned_cols=357  Identities=12%  Similarity=0.033  Sum_probs=180.7

Q ss_pred             HHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 007555          166 WNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSS  244 (598)
Q Consensus       166 ~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~  244 (598)
                      +.+..|.+. + .+ |..+.+....+..+...+..++.|.+.||++||+++..+.++..+.    ..........   ..
T Consensus        46 ~~~~~p~~~-~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~----~~~~~~~~~~---~~  116 (438)
T TIGR00712        46 FALAMPYLV-E-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV----MLLMGFVPWA---TS  116 (438)
T ss_pred             HHhhhHHHH-H-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH----HHHHhccccc---cc
Confidence            455666443 4 37 9999999999999999999999999999999999887765443222    1110110000   01


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh-hchhH
Q 007555          245 SMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSK-YEPVT  323 (598)
Q Consensus       245 ~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~-~~~~~  323 (598)
                      +  .+.+++..++.+.......+.....+. |    ..+++   +..++++.......++..++|.+.+.+... .+...
T Consensus       117 ~--~~~l~~~~~l~g~~~g~~~~~~~~~i~-~----~~~~~---~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~  186 (438)
T TIGR00712       117 S--IAIMFVLLFLNGWFQGMGWPPCGRTMV-H----WWSQS---ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHA  186 (438)
T ss_pred             h--HHHHHHHHHHHHHHhhcchHHHHHHHH-H----hcCcc---cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHH
Confidence            1  122333344455544444333333222 3    33332   677999999988889998888887765542 34332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-ccccccCCCCCCCCCCCccchhhhHHHHHHHH-HHHhcCCchHH
Q 007555          324 CLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAK-CSQSCCRTSNEGPVPDADNIVDVGIEAIKLGW-KEYMQQPVLPA  401 (598)
Q Consensus       324 ~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~-~~~~~~pvll~  401 (598)
                      ...+...   .+++..++. +...+   +.++.++ ++.++.+++..++. . ++ .+.-+ +.++-+ +..+++|.+..
T Consensus       187 ~f~~~~~---~~~i~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~-~~~~~~~~~~~~~~~~~~  255 (438)
T TIGR00712       187 ALYFPAI---CAIIVALFA-FAMMR---DTPQSCGLPPIEEYRNDYPDDY-N-EK-AEQEL-TAKEIFMQYVLPNKLLWY  255 (438)
T ss_pred             HHHHHHH---HHHHHHHHH-HHhcc---CCHHhcCCCCchhccccccccc-c-cc-ccccc-chHHHHHHHHccCchHHH
Confidence            2222211   111111111 11111   1111000 00000000000000 0 00 00000 112222 34678887765


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 007555          402 SLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAV  480 (598)
Q Consensus       402 ~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v  480 (598)
                      ........+.....+....+.|+++ .|+++...|+.....++++++|.++.+++.+|++..+....+...... ...++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~-~~~~~  334 (438)
T TIGR00712       256 IAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTL-VTIAV  334 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHH-HHHHH
Confidence            4443333222212344566778875 699999999999999999999999999999998543322222111101 11111


Q ss_pred             HHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH-H-HHHHHhhhhccCc
Q 007555          481 AVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV-E-SVMLGVAIIANDV  556 (598)
Q Consensus       481 ~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~-~-ll~~~~~i~~~~~  556 (598)
                      ..++.....+......   .++..+++.+.-........++..|++.||+..|+.++..+.. . ..+++.|.+.+..
T Consensus       335 ~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~  409 (438)
T TIGR00712       335 IVYWMNPAGNPLVDMI---CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  409 (438)
T ss_pred             HHHHhcCCCchHHHHH---HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc
Confidence            2222211101111111   1111111211111222345678899999999999998876654 2 3456667666543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.50  E-value=4.3e-11  Score=125.74  Aligned_cols=137  Identities=16%  Similarity=0.038  Sum_probs=83.8

Q ss_pred             hhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhH
Q 007555          416 PGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPL  494 (598)
Q Consensus       416 f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~  494 (598)
                      ....++.|.. +.|.++...|...+...++++++..+.+++.+|+|..+...........+ ............    ..
T Consensus       238 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~  312 (394)
T TIGR00883       238 ITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALL-AVPLLMALLDSG----SF  312 (394)
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH-HHHHHHHHhcCC----ch
Confidence            3445666775 57999999999999999999999999999999999766544222111111 000111111111    11


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHH-HH-HHHHHhhhhccCcc
Q 007555          495 LFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASL-VE-SVMLGVAIIANDVS  557 (598)
Q Consensus       495 ~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~-~~-ll~~~~~i~~~~~~  557 (598)
                      ..+.....+..++...+..+.++++++.+|++.||+.++....+.+. .. +.+.+.+.+.+..+
T Consensus       313 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       313 TLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            11111222223333345677889999999999999999986555433 22 55666676666544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.49  E-value=1.1e-10  Score=127.39  Aligned_cols=343  Identities=12%  Similarity=0.043  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccC-CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007555          164 QLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPAYICLNTVQAAAQLLSAAMIIHAHTVIP  241 (598)
Q Consensus       164 ~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~-~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~  241 (598)
                      .+|-==++.++.+..+ |..+.|++..+..+..++.+|+.|.++||+ +||+++..+.+...+      .........  
T Consensus        19 ~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~------~~~~~~~~~--   90 (418)
T TIGR00889        19 GSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGAL------LLFFAAQVT--   90 (418)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH------HHHHHHHhc--
Confidence            3343344556666677 999999999999999999999999999998 557777755543211      111111111  


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhch
Q 007555          242 TSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEP  321 (598)
Q Consensus       242 ~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~  321 (598)
                         +  .+.+++..++.++......+..+. +..+++... +.    +..+...+.|..-.++..+||.++|.+ +..+.
T Consensus        91 ---~--~~~~~~~~~l~~~~~~~~~~~~~~-l~~~~~~~~-g~----~~~~~~~~~r~~G~lG~~ig~~l~g~l-~~~~~  158 (418)
T TIGR00889        91 ---T--PAGMFPVLLANSLAYMPTIALTNS-ISYANLPQA-GL----DVVTDFPPIRVMGTIGFIAAMWAVSLL-DIELS  158 (418)
T ss_pred             ---C--HHHHHHHHHHHHHHHccHHHHHHH-HHHHHHhhc-CC----CchhcCCCeeeehhHHHHHHHHHHHHh-cccch
Confidence               1  233444444444432211111111 101111000 00    011111112222346788888888877 32211


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHH
Q 007555          322 VTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPA  401 (598)
Q Consensus       322 ~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~  401 (598)
                      ........+   ..++ ..   .+...+  |+.+  ++++        ++  +     .+..++.+.+++..+|+|.+..
T Consensus       159 ~~~f~~~~~---~~~~-~~---~~~~~~--~e~~--~~~~--------~~--~-----~~~~~~~~~~~~~~~k~~~~~~  212 (418)
T TIGR00889       159 NIQLYITAG---SSAL-LG---VFALTL--PDIP--VAKS--------TA--K-----MSIKVMLGLDAFILFKNKRMAI  212 (418)
T ss_pred             hHHHHHHHH---HHHH-HH---HHHhcC--CCCC--CCcc--------cc--c-----cCHHHHhhhhHHHHhcCCCeee
Confidence            111111111   1111 11   111121  2111  0000        00  0     0111222234555788887655


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHhcCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 007555          402 SLAYVLLCLNVVLTPGSLMTAFLTQRGLN--------PSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQA  473 (598)
Q Consensus       402 ~l~~~lL~~~vll~f~~l~~~yl~~lg~s--------~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~  473 (598)
                      .+...++............+.|+.+.|.+        ....|...+..+++++++.+..+++.+|+|..+....+.... 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~-  291 (418)
T TIGR00889       213 FFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAW-  291 (418)
T ss_pred             HHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH-
Confidence            44333332211112223445566665644        367899999999999999999999999999877765544322 


Q ss_pred             HHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHH-HHHHH-HHHHHHhhh
Q 007555          474 SLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEIS-VASLV-ESVMLGVAI  551 (598)
Q Consensus       474 ~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~s-l~~~~-~ll~~~~~i  551 (598)
                         ..+...+..... .......+....++..++...++.....++.+..|+++||+.+|..+. ...+. ..++.+.|.
T Consensus       292 ---~v~~~l~~~~~~-~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~  367 (418)
T TIGR00889       292 ---ALRFGFFAYGDP-EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGV  367 (418)
T ss_pred             ---HHHHHHHHHcCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence               111111111110 011111122222233333334566778889999999999999999974 33333 356677777


Q ss_pred             hccCcc
Q 007555          552 IANDVS  557 (598)
Q Consensus       552 ~~~~~~  557 (598)
                      +.+...
T Consensus       368 l~~~~g  373 (418)
T TIGR00889       368 MVEKMF  373 (418)
T ss_pred             HHHHhc
Confidence            776643

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.48  E-value=2.9e-10  Score=125.82  Aligned_cols=349  Identities=8%  Similarity=-0.012  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeec----cCCc-hHHHHHHHHHHHHHHH
Q 007555          154 ACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMD----HSPR-IPAYICLNTVQAAAQL  227 (598)
Q Consensus       154 ~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvD----R~~R-r~vmi~~d~~q~~~v~  227 (598)
                      .|++-..+...+...=++.|..+..+ |+..+|+.-++..+--.+..|+.|.+.|    ||+| |+.|..+-+..    +
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~----~   88 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLAN----S   88 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHH----H
Confidence            34444444444444446677778888 9999999998888888999999999999    5576 55665554322    1


Q ss_pred             HHHHHHHHHhhhccCCccchHHHHHH-HHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHH
Q 007555          228 LSAAMIIHAHTVIPTSSSMLLHPWFF-VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (598)
Q Consensus       228 ls~~~l~~~~~~~~~~~~~l~~~l~v-v~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i  306 (598)
                      ++..+ ++  .. +..+......++. ..++....-++.++.+..     +.+.+.++  +++.++.++..+....+..+
T Consensus        89 i~~~l-lf--~~-p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~a-----l~~~lt~~--~~eR~~l~~~~~~~~~ig~~  157 (473)
T PRK10429         89 VVLFL-LF--SA-HLFEGTAQYVFVCVTYILWGMTYTIMDIPFWS-----LVPTLTLD--KREREQLVPYPRFFASLAGF  157 (473)
T ss_pred             HHHHH-HH--cC-CCCCccHHHHHHHHHHHHHHHHHHHHcchHHh-----hhHHhCCC--HHHHHHHHHHHHHHHHHHHH
Confidence            22112 22  11 1111111112222 223344555555555543     34447643  45788999986666666667


Q ss_pred             hhHHHHHHHHhhhch---hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhH
Q 007555          307 AGASLFGILLSKYEP---VTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (598)
Q Consensus       307 ~GP~lgGlL~s~~~~---~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (598)
                      +++.++..++..+|.   ............+......+  ......  ++  +++++.+       +..++.    +   
T Consensus       158 ~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~--~~~~~~--~e--~~~~~~~-------~~~~~~----~---  217 (473)
T PRK10429        158 VTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTI--ITLRNV--HE--VYSSDNQ-------VSAEGS----H---  217 (473)
T ss_pred             HHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH--HHHcCc--ee--cCCcccc-------cccccc----C---
Confidence            777666655443331   11111111111111111110  111111  11  1000000       000000    0   


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007555          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (598)
Q Consensus       384 ~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r  463 (598)
                      ..+++.++..++||.++..+...++++.......+.+..|.+....++...+.+.+..+++++++..+.+++.||+|..+
T Consensus       218 ~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~  297 (473)
T PRK10429        218 LTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI  297 (473)
T ss_pred             CCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            12567788888998887655554444332123333444444443335677888888888999999999999999999877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh--cccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCC--ccchh-----HHHH
Q 007555          464 AGAAGLIFQASLLAMAVAVYWS--GSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPS--SKANL-----IGTT  534 (598)
Q Consensus       464 ~g~~~l~~q~~~L~~~v~~~~~--g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~--~~rGR-----V~sv  534 (598)
                      ...++.....+   ..+..+..  ... .  ....+....++..++...++....+++++.+|.  .+.|+     ++|.
T Consensus       298 ~~~~~~~~~~~---~~~~~~~~~~~~~-~--~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~  371 (473)
T PRK10429        298 LWAGASIFPVL---SCGVLLLMGLAAP-H--NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSV  371 (473)
T ss_pred             HHHHHHHHHHH---HHHHHHHHhccCc-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHH
Confidence            76544332111   11111111  111 1  111222223334455556677888899999884  34555     8888


Q ss_pred             HHHHHHHHH
Q 007555          535 EISVASLVE  543 (598)
Q Consensus       535 ~~sl~~~~~  543 (598)
                      ....+.+..
T Consensus       372 ~~~~~K~~~  380 (473)
T PRK10429        372 QTMVVKGGS  380 (473)
T ss_pred             HHHHHHHHH
Confidence            888777774

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.46  E-value=1.7e-09  Score=116.50  Aligned_cols=357  Identities=17%  Similarity=0.134  Sum_probs=209.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          149 LYALYACCLAGNLVEQLWNFAWPSAI---ALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       149 f~~L~~gq~lS~~G~~i~~fAlpL~v---~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      ...-...=.++.|+=...||...=++   +.-.+ |.-.+|..--...+-..+.+|+...+.||+|||+++...-.+=  
T Consensus        11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF--   88 (394)
T COG2814          11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF--   88 (394)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--
Confidence            33334455677778888888765433   34455 7777777777788888999999999999999999988664321  


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHH-HHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAG-AVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg-~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~  303 (598)
                        .++..+..+  ..     +  ++.+.+.=++.+ +...+..++...+.  +    +++++   +-.||-+.+-.--.+
T Consensus        89 --i~~n~l~al--Ap-----~--f~~Ll~aR~~~g~a~G~f~~i~~~~a~--~----lvpp~---~~~~Aiaiv~~G~tl  148 (394)
T COG2814          89 --IVSNLLSAL--AP-----S--FAVLLLARALAGLAHGVFWSIAAALAA--R----LVPPG---KRGRALALVFTGLTL  148 (394)
T ss_pred             --HHHHHHHHH--hc-----c--HHHHHHHHHHHHHHHHHHHHHHHHHHH--H----HcCcc---chhhHHHHHHHHHHH
Confidence              112111111  11     1  122222212222 33455555554443  2    77764   788999999999999


Q ss_pred             HHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhH
Q 007555          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (598)
Q Consensus       304 ~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (598)
                      +.++|.++|.++=+.+|............+..   .+   +....+  | +++.+++           .+      .+  
T Consensus       149 A~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~---~~---~~~~~l--P-~~~~~~~-----------~~------~~--  200 (394)
T COG2814         149 ATVLGVPLGTFLGQLFGWRATFLAIAVLALLA---LL---LLWKLL--P-PSEISGS-----------LP------GP--  200 (394)
T ss_pred             HHHHhccHHHHHHHHhhHHHHHHHHHHHHHHH---HH---HHHHhC--C-CccCCCC-----------CC------cc--
Confidence            99999999999999998765444433322221   11   222222  2 1111000           00      01  


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007555          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGIL  462 (598)
Q Consensus       384 ~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~  462 (598)
                        .++=++ .+|||.++..+..+.+.++---...+..-+|+.+ .|++++.++++.-..++++++|+++.+++.+| +..
T Consensus       201 --~~~~~~-~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~  276 (394)
T COG2814         201 --LRTLLR-LLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR  276 (394)
T ss_pred             --hhHHHH-HhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence              112233 5678877776666666544211111233335554 79999999999999999999999999999999 777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhh-hhhhhhhhhccCCC---ccchhHHHHHHHH
Q 007555          463 KAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSY-DIVGAQILQTGIPS---SKANLIGTTEISV  538 (598)
Q Consensus       463 r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~f-dl~~~~l~Q~~VP~---~~rGRV~sv~~sl  538 (598)
                      +............  + ......+.    ... ..+..+++     |.| +.+..+.+|...-+   +.++.+.|...+.
T Consensus       277 ~~l~~~~~l~a~~--~-l~l~~~~~----~~~-~~~~~~~~-----wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa  343 (394)
T COG2814         277 RALIAALLLLALA--L-LALTFTGA----SPA-LALALLFL-----WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAA  343 (394)
T ss_pred             hHHHHHHHHHHHH--H-HHHHHhcc----hHH-HHHHHHHH-----HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHH
Confidence            7665443222111  1 11112121    111 12212221     222 44555666666655   8999999999988


Q ss_pred             HHHHH-HHHHHhhhhccCcchhHHHHHHHHHHHHHH
Q 007555          539 ASLVE-SVMLGVAIIANDVSHFGFLATLSLLSVVGA  573 (598)
Q Consensus       539 ~~~~~-ll~~~~~i~~~~~~~f~~l~l~S~~~V~~a  573 (598)
                      .++.. ++..+.|.+.+. -......+.+...+..+
T Consensus       344 ~nlgia~GA~lGG~v~~~-~g~~~~~~~~a~l~~~a  378 (394)
T COG2814         344 FNLGIALGAALGGLVLDA-LGYAATGWVGAALLLLA  378 (394)
T ss_pred             HHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHH
Confidence            88884 666666777666 33333333333333333

>PRK03699 putative transporter; Provisional

Probab=99.44  E-value=1.3e-09  Score=117.10  Aligned_cols=267  Identities=11%  Similarity=0.001  Sum_probs=150.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       147 r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      +-+...+.+.++...-.......+|-+.. ..+ |...++.......+...+..++.|.+.||++|||+++.+.+...+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~   85 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAE-YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILA   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            44555666666666655666666676554 456 9899999988889999999999999999999999988776543222


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~  305 (598)
                          ..+..+  . .    +  .+.+++..++.|.......+.....+. +    ..+++   +..++++.......+..
T Consensus        86 ----~~l~~~--~-~----~--~~~~~~~~~l~G~~~g~~~~~~~~~i~-~----~~~~~---~r~~~~~~~~~~~~~g~  144 (394)
T PRK03699         86 ----VAGLMF--S-H----S--LALFSIAMFVLGVVSGITMSIGTFLIT-H----VYEGK---QRGSRLLFTDSFFSMAG  144 (394)
T ss_pred             ----HHHHHH--c-c----h--HHHHHHHHHHHHHhhHhhccchhHHhh-h----hcccc---hHHHHHHHHHHHHHHHH
Confidence                111111  1 1    1  133444444555554444333322221 2    33432   45566666666677778


Q ss_pred             HhhHHHHHHHHh-hhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHH
Q 007555          306 IAGASLFGILLS-KYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (598)
Q Consensus       306 i~GP~lgGlL~s-~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (598)
                      .++|.+++.++. ..+......+.....   +...+   +... ...|+++   ++++        + ++.    +    
T Consensus       145 ~~~~~~~~~l~~~~~gw~~~f~~~~~~~---~~~~~---~~~~-~~~p~~~---~~~~--------~-~~~----~----  197 (394)
T PRK03699        145 MIFPIIAAYLLARSIEWYWVYACIGLVY---VAIFI---LTLF-SEFPALG---KHAP--------K-ADK----P----  197 (394)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHH---HHHHH---HHHh-cCCcccc---ccCc--------c-ccC----c----
Confidence            899999988875 345443222221111   11111   1111 1112111   0000        0 000    0    


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007555          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (598)
Q Consensus       385 ~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r  463 (598)
                      +.+..    + +|.++.......++......+...++.|+.+ .|+++.+.|.+.+...+++++|.++.+++.+|++..+
T Consensus       198 ~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  272 (394)
T PRK03699        198 VAKEK----W-GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR  272 (394)
T ss_pred             ccccc----C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence            00111    1 2222222222222222112344567778864 6999999999999999999999999999999999876


Q ss_pred             HHHH
Q 007555          464 AGAA  467 (598)
Q Consensus       464 ~g~~  467 (598)
                      ....
T Consensus       273 ~l~~  276 (394)
T PRK03699        273 ILTV  276 (394)
T ss_pred             HHHH
Confidence            6543

>PRK09848 glucuronide transporter; Provisional

Probab=99.43  E-value=1.6e-09  Score=118.55  Aligned_cols=342  Identities=11%  Similarity=-0.002  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccC----CchH-HHHHHHHHHHHHHH
Q 007555          154 ACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS----PRIP-AYICLNTVQAAAQL  227 (598)
Q Consensus       154 ~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~----~Rr~-vmi~~d~~q~~~v~  227 (598)
                      .|++...++..+...=++.|..+..+ |+..+|+......+-..+..|+.|.++||.    +||| .+..+-+.-    .
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~----~   90 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL----M   90 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH----H
Confidence            67777777776655445668888888 999999999999999999999999999996    4444 444443221    1


Q ss_pred             HHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHH-----HH
Q 007555          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI-----DL  302 (598)
Q Consensus       228 ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~i-----d~  302 (598)
                      +.+.+ .+....+. .........++...+.++...++++.+...     .+.+..+  +++..+.++..+..     ..
T Consensus        91 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-----~~~~~~~--~~~r~~~~~~r~~~~~~~~~~  161 (448)
T PRK09848         91 IFSVL-VFWVPTDW-SHSSKVVYAYLTYMGLGLCYSLVNIPYGSL-----ATAMTQQ--PQSRARLGAARGIAASLTFVC  161 (448)
T ss_pred             HHHHH-HHhCcCCC-CcchHHHHHHHHHHHHHHHHHHhcccHhhh-----hhhhcCC--HHHHHHHHHHHHHHHHHHHHH
Confidence            11111 22111010 011111112333344555556666555432     2224443  23555666554422     22


Q ss_pred             HHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhh
Q 007555          303 LCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVG  382 (598)
Q Consensus       303 ~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (598)
                      ++..++|.+++..-+... ...........+..++..    +...+. .++  +.+++         .   +    ..  
T Consensus       162 ~~~~~~p~i~~~~g~~~~-~~~~~~~~~~~v~~~~~~----~~~~~~-~~e--~~~~~---------~---~----~~--  215 (448)
T PRK09848        162 LAFLIGPSIKNSSPEEMV-SVYHFWTIVLAIAGMVLY----FICFKS-TRE--NVVRI---------V---A----QP--  215 (448)
T ss_pred             HHHHHHHHHHHhCCCchh-hhHHHHHHHHHHHHHHHH----HHHHcC-cEe--ccCCC---------c---c----CC--
Confidence            345566666653210000 001011111111111111    111110 111  00000         0   0    01  


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007555          383 IEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI  461 (598)
Q Consensus       383 ~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~  461 (598)
                        .+++.++.++++|.++.......+++.....+....+.|+.+ .|.++..-++....+.++.++++.+.+++.+|+|.
T Consensus       216 --~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~  293 (448)
T PRK09848        216 --SLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGK  293 (448)
T ss_pred             --CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence              245567778899988775554444433222333334445543 67666544454555567788899999999999998


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCc-------cchhHHHH
Q 007555          462 LKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSS-------KANLIGTT  534 (598)
Q Consensus       462 ~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~-------~rGRV~sv  534 (598)
                      .+...++....    ..+.........   ...+.+...+++..+|.........++..+.+|++       +.|..+|+
T Consensus       294 ~~~~~~g~~~~----~i~~~~~~~~~~---~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~  366 (448)
T PRK09848        294 KNTFLIGALLG----TCGYLLFFWVSV---WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL  366 (448)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHcCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence            77766554321    111111111110   11112222233445566667777788888888765       45999988


Q ss_pred             HHHHHHHHH
Q 007555          535 EISVASLVE  543 (598)
Q Consensus       535 ~~sl~~~~~  543 (598)
                      .+..+.+..
T Consensus       367 ~~~~~klg~  375 (448)
T PRK09848        367 FSFTRKCGQ  375 (448)
T ss_pred             HHHHHHHHH
Confidence            888777664

>PRK10133 L-fucose transporter; Provisional

Probab=99.43  E-value=2.3e-09  Score=117.74  Aligned_cols=354  Identities=10%  Similarity=-0.007  Sum_probs=194.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHH
Q 007555          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (598)
Q Consensus       149 f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~  227 (598)
                      |..+..--++-.+.+.+...-+|.+ .+..+ |....++......+...+.+++.|.++||++|||++..+-++-.+.  
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~--  104 (438)
T PRK10133         28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG--  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--
Confidence            5666666667677777788888887 45556 9999999999999999999999999999999999998776543222  


Q ss_pred             HHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHh
Q 007555          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (598)
Q Consensus       228 ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~  307 (598)
                        +.+.... ...   .+  .+.+++..++.|+......++.+..+ +|    +.+++   +-.+..+..+....+..++
T Consensus       105 --~~l~~~~-~~a---~~--~~~ll~~r~l~G~g~g~~~~~~~~~v-~~----~~~~~---~~~~~~s~~~~~~~~G~~~  168 (438)
T PRK10133        105 --AALFWPA-AEI---MN--YTLFLVGLFIIAAGLGCLETAANPFV-TV----LGPES---SGHFRLNLAQTFNSFGAII  168 (438)
T ss_pred             --HHHHHHH-Hhc---CC--HHHHHHHHHHHHHHHHHHHhhHHHHH-HH----hCChh---hHHHHHHHHHHHHHHHHHH
Confidence              1111111 111   11  23455555666666666666554433 23    32221   2223467788888889999


Q ss_pred             hHHHHHHHHhhh-c-----------------hhHHH------HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Q 007555          308 GASLFGILLSKY-E-----------------PVTCL------KFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSC  363 (598)
Q Consensus       308 GP~lgGlL~s~~-~-----------------~~~~l------~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~  363 (598)
                      ||.+++.+.... +                 .....      .+.........+..+   +...+.  |+  . +++++ 
T Consensus       169 g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~---~~~~~~--p~--~-~~~~~-  239 (438)
T PRK10133        169 AVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL---IMLTKF--PA--L-QSDNH-  239 (438)
T ss_pred             HHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcC--CC--C-Ccccc-
Confidence            999988765211 1                 00000      000000011111000   111111  11  1 10000 


Q ss_pred             cCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH--hcCCChhHHHHHHHHH
Q 007555          364 CRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT--QRGLNPSIIGGFSGLC  441 (598)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~--~lg~s~~~iG~~~g~g  441 (598)
                            .  ++.   ..    +..+.++.++++|.++..+....++...........+.|+.  ..|+++...|......
T Consensus       240 ------~--~~~---~~----~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~  304 (438)
T PRK10133        240 ------S--DAK---QG----SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGT  304 (438)
T ss_pred             ------c--ccc---cc----chhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Confidence                  0  000   01    12233455778887765444333333221122234455653  3699999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 007555          442 ASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQT  521 (598)
Q Consensus       442 avgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~  521 (598)
                      .+++++|.+..+++.+|+|..+...++......  .+.+..+..+    ....+    ++.+..+|....--...+.-++
T Consensus       305 ~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~--~~~~~~~~~~----~~~~~----~~~l~glg~~~i~P~~~s~a~~  374 (438)
T PRK10133        305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA--LCLISAFAGG----HVGLI----ALTLCSAFMSIQYPTIFSLGIK  374 (438)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH--HHHHHHHcCC----hHHHH----HHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999987776554332211  1111111111    11111    1112223333334455566667


Q ss_pred             cCCCccchhHHHHHHHHHHHHHHHHHHhhhhccCc
Q 007555          522 GIPSSKANLIGTTEISVASLVESVMLGVAIIANDV  556 (598)
Q Consensus       522 ~VP~~~rGRV~sv~~sl~~~~~ll~~~~~i~~~~~  556 (598)
                      ..|++ .|...++..+-..+.-+++.++|.+.+..
T Consensus       375 ~~~~~-~~~as~l~~~~~~g~~~~~~i~G~l~~~~  408 (438)
T PRK10133        375 NLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_pred             ccchh-hccchhHHhHHhccchHHHHHHHHHHHhc
Confidence            66664 66677666532222345667777666554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.39  E-value=4.1e-09  Score=113.32  Aligned_cols=356  Identities=10%  Similarity=-0.044  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007555          159 GNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHT  238 (598)
Q Consensus       159 S~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~  238 (598)
                      ++-+=-.+...+|.+..+..-|..+.+....+..+.+.+..++.|.+.||++||++++.+-..     .+. ..+... .
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~-----~~~-~~~~~~-~   75 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLAT-----FAA-AAGRLL-D   75 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH-----HHH-HHHHHH-H
Confidence            444455667777777766544889999998888999999999999999999999877644221     111 111111 1


Q ss_pred             hccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 007555          239 VIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSK  318 (598)
Q Consensus       239 ~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~  318 (598)
                      .    .+  .+.+++.-++.|..+...-++... + .+|.|    +   ++..++++..+....+..++||.+++.+...
T Consensus        76 ~----~~--~~~l~~~R~l~G~g~~~~~~~~~~-~-~~~~~----~---~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~  140 (368)
T TIGR00903        76 P----FN--YEWLLACQLLAALGQPFLLNAFAP-A-ASQIR----E---ERRDLVISLLSFAMYLGIIFALAAGLKIYTA  140 (368)
T ss_pred             h----cc--HHHHHHHHHHHHhHhHHHHHHHHH-H-HHHcC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            0    01  223344444445444433222322 2 34543    2   3788999999999999999999999999887


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCc
Q 007555          319 YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPV  398 (598)
Q Consensus       319 ~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pv  398 (598)
                      .|......+...   ..++...   +....+  |+.  ++..+            +..   +.  ++..+.++.+++||.
T Consensus       141 ~gWr~~f~~~~~---l~~~~~~---~~~~~l--p~~--p~~~~------------~~~---~~--~~~~~~~~~ll~~~~  193 (368)
T TIGR00903       141 GGLQLLIIPIAA---VAAAGII---LVLAAL--PAL--PFQAA------------EGF---GF--KDAVKEFGALAGRKD  193 (368)
T ss_pred             cchHHHHHHHHH---HHHHHHH---HHHHHc--CCC--CCCCC------------CCc---ch--HHHHHHHHHHHcChh
Confidence            775543332111   1111111   111122  211  11000            000   00  112235677888887


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 007555          399 LPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAAT-FLSAYLVRRLGILKAGAAGLIFQASLLA  477 (598)
Q Consensus       399 ll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGt-l~~~~l~rrlg~~r~g~~~l~~q~~~L~  477 (598)
                      +..........+.....+..-++.|+++.|++.. .|.......++|.+|. ++..++.|| +..+.......   .+..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~-~~r~~~~~~~~---~~~a  268 (368)
T TIGR00903       194 LWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARA-GLRSIYIRAAA---LLIA  268 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhh-hhHHHHHHHHH---HHHH
Confidence            7654333222222212344557778877788764 5555555555555444 223333222 22121111000   0001


Q ss_pred             HHHHH-HhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccC
Q 007555          478 MAVAV-YWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAND  555 (598)
Q Consensus       478 ~~v~~-~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~  555 (598)
                      .+... ....+.   ...+ .  .+.+..++....-....++.+|..|++.||+..|+.+++.+..- ..+.+.+.+.. 
T Consensus       269 ~~~~~~~~~~~~---~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-  341 (368)
T TIGR00903       269 AFFLALAFELNR---LALF-A--FIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-  341 (368)
T ss_pred             HHHHHHHHcccc---HHHH-H--HHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-
Confidence            11111 111111   1111 1  11112122111112355789999999999999999999998885 55555554442 


Q ss_pred             cchhHHHHHHHHHHHHHHHHH
Q 007555          556 VSHFGFLATLSLLSVVGAAWM  576 (598)
Q Consensus       556 ~~~f~~l~l~S~~~V~~a~~l  576 (598)
                       +..+...+.....+..++..
T Consensus       342 -~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       342 -SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             -CHHHHHHHHHHHHHHHHHHH
Confidence             33344444444444444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.38  E-value=3.2e-09  Score=117.90  Aligned_cols=161  Identities=10%  Similarity=-0.081  Sum_probs=112.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cC-ChhHHHHHHHHHHHHHHHcccccceeecc-CCchHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALL--HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDH-SPRIPAYICLNT  220 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~l--t~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR-~~Rr~vmi~~d~  220 (598)
                      ||+.++.++..++...++-....--+|+|+...  .+ |....+.......+...+..+++|.++|| ++|||++..+-+
T Consensus         8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~   87 (475)
T TIGR00924         8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGI   87 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHH
Confidence            678899999999999999988888899999876  67 88899999888888999999999999999 899999887765


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHH
Q 007555          221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI  300 (598)
Q Consensus       221 ~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~i  300 (598)
                      +..+.    ..  ...  ..+   +  .+.+++..++.+....++.+.....+ .||.    +++++.+..++.+.....
T Consensus        88 ~~~~g----~~--~~~--~~~---~--~~~~~~~~~l~g~g~g~~~~~~~~~~-a~~~----~~~~~~~r~~~~~~~~~~  149 (475)
T TIGR00924        88 VLMLG----HF--MLA--MSI---Y--PDLIFYGLGTIAVGSGLFKANPSSMV-GKLY----ERGDMPRRDGGFTLFYMS  149 (475)
T ss_pred             HHHHH----HH--HHH--hcc---c--HhHHHHHHHHHHhccccccCCHHHHH-HHhc----CCCCcccccceehhHHHH
Confidence            43221    11  111  110   1  12333444445555544444433322 3433    222112455677888888


Q ss_pred             HHHHHHhhHHHHHHHHhhhchhH
Q 007555          301 DLLCEIAGASLFGILLSKYEPVT  323 (598)
Q Consensus       301 d~~~~i~GP~lgGlL~s~~~~~~  323 (598)
                      ..++.++||.++|.+....|...
T Consensus       150 ~niG~~ig~~l~g~l~~~~g~~~  172 (475)
T TIGR00924       150 INIGSFISPLLAGVIAENYGYHV  172 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhcChHH
Confidence            89999999999999988767543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.38  E-value=8e-10  Score=121.33  Aligned_cols=252  Identities=11%  Similarity=-0.064  Sum_probs=140.3

Q ss_pred             cC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHH
Q 007555          178 HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLV  256 (598)
Q Consensus       178 t~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~  256 (598)
                      .+ |....|+...+..+.+++.++++|.++||++||+++..+.++..+.    ..+..+....     .  .+.+++.-+
T Consensus        71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~----~~~~~~~~~~-----~--~~~l~~~r~  139 (465)
T TIGR00894        71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVI----SIVIPWAAGG-----G--IALVVFCRV  139 (465)
T ss_pred             CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHH----HHHHHHHHHc-----C--chHHHHHHH
Confidence            35 7888898888899999999999999999999999988776542222    1111111111     1  123444455


Q ss_pred             HHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh-chhHHHHHHHHHHHHH
Q 007555          257 LAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKY-EPVTCLKFAAGLIMWS  335 (598)
Q Consensus       257 llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~-~~~~~l~~~~~~~~~S  335 (598)
                      +.|..+....++....     ++...++   ++..++++.......++.++||.++|.+.... +......+....   .
T Consensus       140 ~~G~~~~~~~~~~~~~-----~~~~~~~---~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~---~  208 (465)
T TIGR00894       140 IQGLAQGSVSPATHKI-----IVKWAPP---KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIV---G  208 (465)
T ss_pred             HHHHhcccchhhHHHH-----HHhcCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHH---H
Confidence            5666666555544332     2223443   37889999999999999999999999998763 644322222111   1


Q ss_pred             HHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhh
Q 007555          336 LPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLT  415 (598)
Q Consensus       336 ~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~  415 (598)
                      ++..+ ..+...   .+.++..+..+++.++..++..++.+. ..+    -+..|+..+++|.+.........++.....
T Consensus       209 ~~~~~-~~~~~~---~~~p~~~~~~~~~~~~~i~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (465)
T TIGR00894       209 CAWSL-LWFVFP---ADDPSIHPCISKFEKKYINSSLQGQKG-STR----QSLPIKAIPKSLPVWAIWFAIFGHFWLYTI  279 (465)
T ss_pred             HHHHH-HHHHHh---cCCcccCCCCCHHHHHHHHhhcccccC-CCC----CCCCHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            11111 001111   111110000000000000000000000 000    011356677777665433332222222123


Q ss_pred             hhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007555          416 PGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (598)
Q Consensus       416 f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg  460 (598)
                      +...++.|+.+ .|++..+.|+..+...++++++.++.+++.+|++
T Consensus       280 ~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~  325 (465)
T TIGR00894       280 LPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLK  325 (465)
T ss_pred             HHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677764 7999999999999989999999999888887764

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.38  E-value=5.2e-09  Score=116.42  Aligned_cols=196  Identities=13%  Similarity=0.092  Sum_probs=124.2

Q ss_pred             hhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          379 VDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVR  457 (598)
Q Consensus       379 ~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~r  457 (598)
                      ....++++++-+|...|+|.+..-++.-++|.-.+.....+...|.+ +.|++..++..+.-+..+.+++|+++++++.|
T Consensus       263 ~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~  342 (477)
T PF11700_consen  263 LRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQD  342 (477)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888888888888886554222223333222334456666887 58999999999999999999999999999999


Q ss_pred             hhhhh--HHHHHHHHHHHHHHHHHHHHHhhcc--cccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHH
Q 007555          458 RLGIL--KAGAAGLIFQASLLAMAVAVYWSGS--LSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGT  533 (598)
Q Consensus       458 rlg~~--r~g~~~l~~q~~~L~~~v~~~~~g~--~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~s  533 (598)
                      |+|..  ++....+.....+...+...++...  ..+.+.++++. .+..  +..-...-...++.-+.+|+++.|..+|
T Consensus       343 r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a-~~~G--~~~G~~qs~sRs~~~~LiP~g~e~efFg  419 (477)
T PF11700_consen  343 RFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLA-VLIG--LFMGGIQSASRSLFSRLIPPGREAEFFG  419 (477)
T ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHH-HHHH--HHhhhHHHHHHHHHHHhCCCchhhHHHH
Confidence            99987  6655544332121112211111111  11122233222 1221  2222456778899999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHH
Q 007555          534 TEISVASLVE-SVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMF  577 (598)
Q Consensus       534 v~~sl~~~~~-ll~~~~~i~~~~~~~f~~l~l~S~~~V~~a~~l~  577 (598)
                      .......... +++++.|++........+-.+.-....+.+..++
T Consensus       420 ly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll  464 (477)
T PF11700_consen  420 LYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL  464 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            9999999886 5666678887777655454443333444433333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00896 CynX cyanate transporter

Probab=99.38  E-value=8.6e-10  Score=116.41  Aligned_cols=326  Identities=14%  Similarity=0.037  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccch
Q 007555          168 FAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSML  247 (598)
Q Consensus       168 fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l  247 (598)
                      ..+|.+..+..-|...++.......+...+.+++.|.+.||++|||++..+.+...+.      .+..  ...    +  
T Consensus        21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~------~~~~--~~~----~--   86 (355)
T TIGR00896        21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAG------ILIR--SAP----G--   86 (355)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHH------HHHH--Hhc----c--
Confidence            3455555444338999999999999999999999999999999999988766432211      1111  111    1  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchhHHHHH
Q 007555          248 LHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKF  327 (598)
Q Consensus       248 ~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~~~l~~  327 (598)
                      .+.+++..++.|.......++....+ .||    .+    ++..++++..+....++..+||.+++.+....+...-..+
T Consensus        87 ~~~l~~~~~~~g~g~~~~~~~~~~~~-~~~----~~----~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f  157 (355)
T TIGR00896        87 TALLFAGTALIGVGIAIINVLLPSLI-KRD----FP----QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL  157 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHH-HHh----Cc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            12333333334443333332222222 232    22    2567899999988888899999999988765432111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHHHHHHHH
Q 007555          328 AAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVL  407 (598)
Q Consensus       328 ~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~l  407 (598)
                      .... +..+. ..   .  ..+  ++.++ +++++       .  +..           +.+++..+++|.+........
T Consensus       158 ~~~~-~~~~~-~~---~--~~~--~~~~~-~~~~~-------~--~~~-----------~~~~~~~~~~~~~~~~~~~~~  207 (355)
T TIGR00896       158 AWWA-LPALL-AL---L--AWI--PQVRR-RVAAN-------Q--TTT-----------RLTPVRIWRSPLAWQVTVFFG  207 (355)
T ss_pred             HHHH-HHHHH-HH---H--HHh--hhhcc-ccCCC-------C--CCC-----------CCCCchhhcCHhHHHHHHHHH
Confidence            1000 01111 11   0  111  11111 11000       0  000           011233456665544332222


Q ss_pred             HHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHH-HHhh
Q 007555          408 LCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK-AGAAGLIFQASLLAMAVA-VYWS  485 (598)
Q Consensus       408 L~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r-~g~~~l~~q~~~L~~~v~-~~~~  485 (598)
                      +.......+...++.|+++.|+++...|.+.+...+++++|.+..+++.+|++..| ....+....    .++.. ..+.
T Consensus       208 ~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~----~~~~~~~~~~  283 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQ----LVGLCGLLFA  283 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH----HHHHHHHHHh
Confidence            22111123344566787778999999999999999999999999999999995433 333222211    11111 1111


Q ss_pred             cccccchhHHHHHHHHHHHhhhhhhhhhhhhh-hhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccCcc
Q 007555          486 GSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQ-ILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIANDVS  557 (598)
Q Consensus       486 g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~-l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~~~  557 (598)
                      ..  .....+..     +..+|.........+ +.|+..+++++|++++..+++.++.. +.+.+.|.+.+...
T Consensus       284 ~~--~~~~~~~~-----l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       284 PM--HGLWAWAL-----VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             hh--hHHHHHHH-----HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11  01111111     122232222222333 34555667888999999887776653 45566666654433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.37  E-value=5.1e-09  Score=114.30  Aligned_cols=358  Identities=10%  Similarity=-0.025  Sum_probs=177.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHH-H----HHH-HHHHHHHHcccccceeeccCCchHHHHHHHHH
Q 007555          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVA-V----MGF-FSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (598)
Q Consensus       148 ~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~a-v----~~~-~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~  221 (598)
                      ....++.+.++..+.-....++.|.+..+...+....+ +    ..+ ...+...+.+++.|.++||++|||+++.+-++
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~   95 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence            35667788888888888888888877776654443322 1    111 11222234578889999999999998876553


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCccchHH-----HHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHH
Q 007555          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLH-----PWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV  296 (598)
Q Consensus       222 q~~~v~ls~~~l~~~~~~~~~~~~~l~~-----~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~  296 (598)
                      -.+.    ..+..+  ..   + .....     .+++.-++.|.......+... ..-.||    .+++   +..++++.
T Consensus        96 ~~~~----~~l~~~--~~---~-~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~-~~~~e~----~p~~---~rg~~~~~  157 (434)
T PRK15075         96 MASG----TLLIAF--VP---G-YATIGLAAPLLVLLGRLLQGFSAGVELGGVS-VYLAEI----ATPG---RKGFYTSW  157 (434)
T ss_pred             HHHH----HHHHHh--CC---c-HHHHHHHHHHHHHHHHHHhhccccccHHHHH-HHHHhh----CCcc---cchHHHHH
Confidence            2221    111111  11   0 00000     112222233333222222221 222343    3432   67889999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhh--------hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCC
Q 007555          297 LNRIDLLCEIAGASLFGILLSK--------YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSN  368 (598)
Q Consensus       297 l~~id~~~~i~GP~lgGlL~s~--------~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~  368 (598)
                      .....+.+..+||.+++.+...        .|....+.+.    +...+..    +. .+...|+   .++..+.     
T Consensus       158 ~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~----~~~~~~~----~~-~~~~~~e---~~~~~~~-----  220 (434)
T PRK15075        158 QSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG----CLIVPFI----FL-IRRSLEE---TEEFLAR-----  220 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHH----HHHHHHH----HH-HHHhcCC---CHHHHHh-----
Confidence            9988889999999999987543        3322222211    1111101    11 1111111   0000000     


Q ss_pred             CCCCCCCccchhhhHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHH
Q 007555          369 EGPVPDADNIVDVGIEAIKLGWKEYMQQPV-LPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGV  446 (598)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~eG~~~~~~~pv-ll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGL  446 (598)
                       ..+++    .++.+++       ..+++. +...+.................+.|+++ .|+++.+.++.....+++++
T Consensus       221 -~~~~~----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~  288 (434)
T PRK15075        221 -KHRPS----MREIFRS-------LAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNF  288 (434)
T ss_pred             -hhccc----cccHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence             00000    1112222       222221 1111111111111101223346667775 79999988888888899999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCc
Q 007555          447 AATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSS  526 (598)
Q Consensus       447 lGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~  526 (598)
                      +|+.+.+++.+|+|..+...++......+ ............  ........  ..+..++...++.....+.+|..|++
T Consensus       289 ~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~g~~~~~~~~~~~e~~p~~  363 (434)
T PRK15075        289 IWLPIGGALSDRIGRRPVLIAFTVLAILT-AYPALSWLVAAP--SFARMLAV--ELWLSFLYGSYNGAMVVALTEVMPAE  363 (434)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHcCC--chHHHHHH--HHHHHHHHHHHHhhHHHHHHHHCCCC
Confidence            99999999999999776554432221111 000001111111  11111110  01111122234444557789999999


Q ss_pred             cchhHHHHHHHHHHHH--HHHHHHhhhhccCcc
Q 007555          527 KANLIGTTEISVASLV--ESVMLGVAIIANDVS  557 (598)
Q Consensus       527 ~rGRV~sv~~sl~~~~--~ll~~~~~i~~~~~~  557 (598)
                      +||+.+++..++....  ...+++.+.+.+...
T Consensus       364 ~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        364 VRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             ccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            9999999876655532  245566666555433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.36  E-value=1.2e-08  Score=118.82  Aligned_cols=153  Identities=16%  Similarity=0.070  Sum_probs=93.5

Q ss_pred             chhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHH
Q 007555          147 EGLYALYACCLAGNLVEQL----WNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (598)
Q Consensus       147 r~f~~L~~gq~lS~~G~~i----~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q  222 (598)
                      +..+.++..-.+..+.+.+    ..+.+|.+.....-|....+.+..+..+..++.+++.|.++||++||++++.+-++.
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4455566666666666655    444555444333338888899988889999999999999999999999988765432


Q ss_pred             HHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHH
Q 007555          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (598)
Q Consensus       223 ~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~  302 (598)
                      .+.    ..+..+  ..     +  .+.+++.-++.|.......+.... +-.+    +.++   +...++.+.++....
T Consensus       243 ~i~----~ll~af--a~-----s--~~~llv~R~l~G~g~g~~~p~~~~-~isE----~~p~---~~Rg~~~g~~~~~~~  301 (742)
T TIGR01299       243 GFF----AFFSSF--VQ-----G--YGFFLFCRLLSGFGIGGAIPIVFS-YFAE----FLAQ---EKRGEHLSWLCMFWM  301 (742)
T ss_pred             HHH----HHHHHH--Hh-----h--HHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HCCH---HHHHHHHHHHHHHHH
Confidence            221    111111  11     1  123344434444333322222222 2223    3343   266788888888888


Q ss_pred             HHHHhhHHHHHHHHhhhc
Q 007555          303 LCEIAGASLFGILLSKYE  320 (598)
Q Consensus       303 ~~~i~GP~lgGlL~s~~~  320 (598)
                      +..+++|.+++.+...+|
T Consensus       302 iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       302 IGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            889999998888775443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.36  E-value=8.6e-09  Score=114.32  Aligned_cols=290  Identities=12%  Similarity=-0.030  Sum_probs=144.9

Q ss_pred             cCCCCChhhhhhhccCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccc
Q 007555          127 TIPVLSEEEQNALAATPAHP---EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLV  202 (598)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~r~---r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~a  202 (598)
                      ++|+..++.+++.+.-+.++   +.+...|..-++..++...+....|.+ ....+ |....+.......+..++..++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~gls~~~~g~~~~~~~~~~~~~~~~~   91 (476)
T PLN00028         13 ALPVDSEHKATEFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPII-RDNLNLTKSDIGNAGIASVSGSIFSRLAM   91 (476)
T ss_pred             CCCcCcccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            56665555555554433333   334445555555555554444444444 44455 88888888777778888888999


Q ss_pred             ceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeec
Q 007555          203 GKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLA  282 (598)
Q Consensus       203 GvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv  282 (598)
                      |.+.||++||+++..+-++-.+.      .+......     +  .+.+++.-++.|.....+.+.. . .-.+|.    
T Consensus        92 G~l~dr~G~r~~~~~~~~~~~~~------~~~~~~~~-----s--~~~l~~~r~l~G~~~~~~~~~~-~-~i~~~~----  152 (476)
T PLN00028         92 GPVCDLYGPRYGSAFLLMLTAPA------VFCMSLVS-----S--ATGFIAVRFFIGFSLATFVSCQ-Y-WMSTMF----  152 (476)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHH------HHHHHHhc-----C--HHHHHHHHHHHHHHHHhhHHHH-H-HHHHhc----
Confidence            99999999999887654332111      11111111     1  1233333344444333222211 1 112433    


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---------hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007555          283 GINRPIALAKANAVLNRIDLLCEIAGASLFGILLSK---------YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGV  353 (598)
Q Consensus       283 ~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~---------~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~  353 (598)
                      ++   ++..++++.......+...+||.+.+.+...         .|....+.+...   ..++..+    ....+.++.
T Consensus       153 ~~---~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~---l~l~~~l----~~~~~~~~~  222 (476)
T PLN00028        153 NG---KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGL---LHIIMGI----LVLTLGQDL  222 (476)
T ss_pred             Ch---hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH---HHHHHHH----HHHHHcCcC
Confidence            32   2566788887766666666666666554332         122221221111   1111111    111111111


Q ss_pred             cccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHHH-HHHHHHHHHhhhhhhHHHHHHHHh-cCCCh
Q 007555          354 LDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPAS-LAYVLLCLNVVLTPGSLMTAFLTQ-RGLNP  431 (598)
Q Consensus       354 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~-l~~~lL~~~vll~f~~l~~~yl~~-lg~s~  431 (598)
                      ++. + .++..+    +...+    ....    .+-++..++++.+... +.+...+... ..+...++.|+.+ .|+++
T Consensus       223 p~~-~-~~~~~~----~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~l~~~~g~s~  287 (476)
T PLN00028        223 PDG-N-YRELKK----SGTMP----KDSF----SKVLRYGVTNYRTWILALTYGYSFGVE-LTMDNIIAEYFYDRFGLSL  287 (476)
T ss_pred             CCC-c-hhhHHh----cCccc----cccH----HHHHHHHHcCchhHHHHHHHHHHHHHH-HHHHhHHHHHHHHhcCCCH
Confidence            110 0 000000    00000    0111    1234444556554322 2222122111 1233456667764 69999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007555          432 SIIGGFSGLCASMGVAATFLSAYLVRRLGI  461 (598)
Q Consensus       432 ~~iG~~~g~gavgGLlGtl~~~~l~rrlg~  461 (598)
                      ...|.+.+..++++++|.++.+++..|++.
T Consensus       288 ~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~  317 (476)
T PLN00028        288 ETAGAIAASFGLMNLFARPAGGYLSDVAAR  317 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            999999999999999999999988888764

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.35  E-value=5.4e-09  Score=113.61  Aligned_cols=373  Identities=13%  Similarity=0.057  Sum_probs=197.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       146 ~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      .+-+..++.+.++..+......++.| .+.+..+ |....++...+..+...+.+++.|.+.||++||+++..+-++-.+
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~   85 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI   85 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence            34466677888888888888888888 4555556 999999999999999999999999999999999998776543222


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                      .    ..  ......     +  .+.+++.-++.|..+..+.++....+ .+|.|    +   ++..++++..+....++
T Consensus        86 ~----~~--~~~~~~-----~--~~~l~~~r~l~G~~~~~~~~~~~~~~-~~~~~----~---~~rg~~~~~~~~~~~~g  144 (412)
T TIGR02332        86 A----ST--ATMFAT-----G--PESLYLLRILVGIAEAGFLPGILLYL-TFWFP----A---YFRARANALFMIAMPVT  144 (412)
T ss_pred             H----HH--HHHHhc-----C--HHHHHHHHHHHHHHHhhHHHHHHHHH-HHHcC----H---HHHHHHHHHHHHHHHHH
Confidence            1    11  111111     1  13344444555665555555443322 34433    2   36788999999988999


Q ss_pred             HHhhHHHHHHHHhh------hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--cccccc-------CCCCC
Q 007555          305 EIAGASLFGILLSK------YEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAK--CSQSCC-------RTSNE  369 (598)
Q Consensus       305 ~i~GP~lgGlL~s~------~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~--~~~~~~-------~~~~~  369 (598)
                      .++||.++|.+...      .|......+....   .++...+ .+.  .+ ++.+++.+  ++++..       ++..+
T Consensus       145 ~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~---~l~~~~~-~~~--~~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~  217 (412)
T TIGR02332       145 MALGLILSGYILALDGLMALKGWQWLFLLEGFP---SVILGVM-TWF--WL-DDSPDKAKWLDEEDKKALKEMIDNDQLT  217 (412)
T ss_pred             HHHHHHHHHHHHhCCCCCCccchhHHHHHHHHH---HHHHHHH-Hhh--cc-CCCcccCCCCCHHHHHHHHHHHHhcccc
Confidence            99999999988742      3433322222111   1111110 011  11 11111000  000000       00000


Q ss_pred             CCCCCCccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhc--CCChhHHHHHHHHHHHHHHH
Q 007555          370 GPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQR--GLNPSIIGGFSGLCASMGVA  447 (598)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~l--g~s~~~iG~~~g~gavgGLl  447 (598)
                      .+.++.. ..+.. ...+.-|+-.++ |.+................+...++.|+.+.  |+++...|.+.+...+++++
T Consensus       218 ~~~~~~~-~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~  294 (412)
T TIGR02332       218 LEQPEGA-FAHAA-MPQRSMLREIFT-PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIF  294 (412)
T ss_pred             ccccccc-ccccc-ccHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHH
Confidence            0000000 00000 000122333332 4332211111111111123344566677653  67888889999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCc
Q 007555          448 ATFLSAYLVRRLGILKAGAA-GLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSS  526 (598)
Q Consensus       448 Gtl~~~~l~rrlg~~r~g~~-~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~  526 (598)
                      |.++.+++.+|++..+.... .......  ...+.. ....    .....+.  +.+..+|...--.......++..|++
T Consensus       295 g~l~~g~l~dr~~~r~~~~~~~~~~~~~--~~~~~~-~~~~----~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~  365 (412)
T TIGR02332       295 GMIWWSRHSDRLKERKHHTALPYLFAAA--GWLLAS-ATDH----NLIQLLG--IIMASMGSFSAMAIFWTTPDQSISLQ  365 (412)
T ss_pred             HHHHHHHHhcccCccHHHHHHHHHHHHH--HHHHHH-hcCC----HHHHHHH--HHHHHHHhhhhhhHHHhhcccccchH
Confidence            99999999999875443221 1111111  111111 1111    1111111  11111121111122334557788999


Q ss_pred             cchhHHHHHHHHHHHHH-HHHHHhhhhccCcchh
Q 007555          527 KANLIGTTEISVASLVE-SVMLGVAIIANDVSHF  559 (598)
Q Consensus       527 ~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~~~~f  559 (598)
                      .||++.|+.++..++.. ..+.+.+.+.+....+
T Consensus       366 ~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~  399 (412)
T TIGR02332       366 ARAIAIAVINATGNIGSALSPFLIGILKDATGSF  399 (412)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhcccccccCCCC
Confidence            99999999999988764 4556667766655433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09669 putative symporter YagG; Provisional

Probab=99.33  E-value=2.7e-08  Score=108.95  Aligned_cols=329  Identities=10%  Similarity=0.051  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccC----Cc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007555          167 NFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS----PR-IPAYICLNTVQAAAQLLSAAMIIHAHTVI  240 (598)
Q Consensus       167 ~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~----~R-r~vmi~~d~~q~~~v~ls~~~l~~~~~~~  240 (598)
                      ..-++.|..+..+ |+..+|+.-.+..+--.+..|+.|.++||.    +| |+.|+..-+..    +++..+ .+.  .+
T Consensus        29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~----~i~~~l-~f~--~p  101 (444)
T PRK09669         29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPF----GVVCLL-TFY--TP  101 (444)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHH----HHHHHH-HHh--CC
Confidence            3445666677788 999999999999999999999999999994    44 45565443321    122212 221  11


Q ss_pred             cCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhc
Q 007555          241 PTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE  320 (598)
Q Consensus       241 ~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~  320 (598)
                      ..+........++..++.+......++.+..     +.+.+.++  +++.++.++.-.....+..++++.++..+...++
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~a-----l~~~~t~~--~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~  174 (444)
T PRK09669        102 DFGATGKIIYACVTYILLSLVYTAINVPYCA-----MPGAITND--PRERHSLQSWRFALSFIGGLIVSVIALPLVDILG  174 (444)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhhcchHHH-----hHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            1001111111222223444444455544432     23335543  3467788998888888888888887777766543


Q ss_pred             h---hHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcC
Q 007555          321 P---VTCLKFAAGLI-MWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQ  396 (598)
Q Consensus       321 ~---~~~l~~~~~~~-~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~  396 (598)
                      .   ........... +...+..+   ......  ++  +.++++        +   +    .    .+.++.++..+++
T Consensus       175 ~~~~~~g~~~~~~i~~ii~~v~~~---~~~~~~--~e--~~~~~~--------~---~----~----~~~~~~~~~~~~n  228 (444)
T PRK09669        175 KGDEQKGYFYAMMVMGLLGVVLFF---CCFFMT--KE--RYTPEV--------D---N----S----SSVWKDLKLLLGN  228 (444)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHH---HHhCCe--EE--ecCCCC--------c---C----C----CCHHHHHHHHhCC
Confidence            2   11111111111 11111111   111111  10  100000        0   0    0    1235667778899


Q ss_pred             CchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 007555          397 PVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASL  475 (598)
Q Consensus       397 pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~  475 (598)
                      |.++..+...+++........+....|.+. .+ ++...+.+...+.+.++++..+.+++.+|+|..+...++.....  
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~--  305 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFV--  305 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH--
Confidence            988775554443322212223333334333 23 34455666777788889999999999999988776654432211  


Q ss_pred             HHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCC-------CccchhHHHHHHHHHHHHH
Q 007555          476 LAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIP-------SSKANLIGTTEISVASLVE  543 (598)
Q Consensus       476 L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP-------~~~rGRV~sv~~sl~~~~~  543 (598)
                       +.+...+....  ..  ...+....++..+|.........+++=+.+|       ++.-|..+|.....+++..
T Consensus       306 -~~~~~~~~~~~--~~--~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~  375 (444)
T PRK09669        306 -ILSALIFFIPP--SN--VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGL  375 (444)
T ss_pred             -HHHHHHHHhCc--ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHH
Confidence             11121222111  11  1111222233344444445555555544444       3345667777776666553

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.32  E-value=1.5e-08  Score=110.54  Aligned_cols=340  Identities=11%  Similarity=0.011  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC---ChhH---HHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          152 LYACCLAGNLVEQLWNFAWPSAIALLHP---SLLP---VAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       152 L~~gq~lS~~G~~i~~fAlpL~v~~lt~---S~l~---~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      .+.+.++..+.-.++.++.|.+..+..+   +...   .+..-....+-..+.+++.|.+.||++|||++..+.++-.+.
T Consensus        27 ~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~  106 (432)
T PRK10406         27 ASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFG  106 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            3455777777777788888866665542   2322   222223344555688999999999999999998877643332


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~  305 (598)
                      ..    ...+...... ........+++.=++.|.......+.....+ .||.|    ++   +..++.+..+.......
T Consensus       107 ~~----~~~~~~~~~~-~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i-~e~~p----~~---~rg~~~~~~~~~~~~G~  173 (432)
T PRK10406        107 SL----VIACLPGYET-IGTWAPALLLLARLFQGLSVGGEYGTSATYM-SEVAV----EG---RKGFYASFQYVTLIGGQ  173 (432)
T ss_pred             HH----HHhhcCCchh-HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH-HHhCC----CC---cccHHHHHHHHHHHHHH
Confidence            11    1111100000 0000001122222344443332233222222 34433    22   33456666555555555


Q ss_pred             HhhHHHHHHHHh--------hhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCcc
Q 007555          306 IAGASLFGILLS--------KYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADN  377 (598)
Q Consensus       306 i~GP~lgGlL~s--------~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~  377 (598)
                      ++++.+++.+..        ..|....+.+...   ..++    . +.+.+ ..|+.   ++.++       +   . . 
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~---~~ll----~-~~~~~-~~~e~---~~~~~-------~---~-~-  229 (432)
T PRK10406        174 LLALLVVVVLQQTLEDAELREWGWRIPFALGAV---LAVV----A-LWLRR-QLDET---SQQET-------R---A-L-  229 (432)
T ss_pred             HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH---HHHH----H-HHHHh-cCCCC---chHHH-------h---h-h-
Confidence            666655544432        2333322222111   1111    1 11221 11211   00000       0   0 0 


Q ss_pred             chhhhHHHHHHHHHHHhcCCchHHH-HHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          378 IVDVGIEAIKLGWKEYMQQPVLPAS-LAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYL  455 (598)
Q Consensus       378 ~~~~~~~~i~eG~~~~~~~pvll~~-l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l  455 (598)
                        +    + +..++.++++|..... +............+...++.|+.+ .|++..+.+...+...+++.++..+.+++
T Consensus       230 --~----~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l  302 (432)
T PRK10406        230 --K----E-AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGAL  302 (432)
T ss_pred             --c----c-cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0    0 1123334455533322 111111111111233456667764 79999899998888888888888888999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHH
Q 007555          456 VRRLGILKAGAAGLIFQASLLAMAVAVY-WSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTT  534 (598)
Q Consensus       456 ~rrlg~~r~g~~~l~~q~~~L~~~v~~~-~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv  534 (598)
                      .+|++..+...+....   +.......+ ...... .....+.+..+.....+  .+......+.+|..|++.||+..|+
T Consensus       303 ~Dr~grr~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~fp~~~r~t~~g~  376 (432)
T PRK10406        303 SDKIGRRTSMLCFGSL---AALFTVPILSALQNVS-SPYAAFGLVMCALLIVS--FYTSISGILKAEMFPAQVRALGVGL  376 (432)
T ss_pred             HHHcCchHHHHHHHHH---HHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCccchhhhH
Confidence            9999876654432211   111111111 111110 11111111111111111  1223455778999999999999999


Q ss_pred             HHHHHHH
Q 007555          535 EISVASL  541 (598)
Q Consensus       535 ~~sl~~~  541 (598)
                      .+.+.+.
T Consensus       377 ~~~~g~~  383 (432)
T PRK10406        377 SYAVANA  383 (432)
T ss_pred             HHHHHHH
Confidence            9988665

>TIGR00788 fbt folate/biopterin transporter

Probab=99.28  E-value=1.8e-09  Score=119.65  Aligned_cols=353  Identities=12%  Similarity=0.028  Sum_probs=187.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCC-----chHHHHHHHHHHHHHHHHH
Q 007555          156 CLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSP-----RIPAYICLNTVQAAAQLLS  229 (598)
Q Consensus       156 q~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~-----Rr~vmi~~d~~q~~~v~ls  229 (598)
                      .+..-+. .+...+++-++-+..+ |...++.+.....+|+.+ -|+.|.++||++     ||+.|+...++..   +  
T Consensus        35 y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~---~--  107 (468)
T TIGR00788        35 LFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGS---A--  107 (468)
T ss_pred             HHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHH---H--
Confidence            3444445 7888888888888888 999998888889999987 777999999997     7777776644311   0  


Q ss_pred             HHHHHHHhhhccCCccchHHHHHH-HHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHH---HHHHHHHHH
Q 007555          230 AAMIIHAHTVIPTSSSMLLHPWFF-VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV---LNRIDLLCE  305 (598)
Q Consensus       230 ~~~l~~~~~~~~~~~~~l~~~l~v-v~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~---l~~id~~~~  305 (598)
                       .. .......+  +.   ..+++ ..++.+......+++...-+ -|    ..+++   + ...|+.   .-....+..
T Consensus       108 -~~-~~~l~~~~--~~---~~~~~~~~~l~~~~~a~~dv~~da~~-~e----~~~~~---~-~~~~~~~s~~~~~~~~G~  171 (468)
T TIGR00788       108 -IL-YGLLPGKV--SS---AKVAAAFIFLAALAKALYDVLVDSLY-SE----RIRES---P-SAGPSLVSWMWGASATGG  171 (468)
T ss_pred             -HH-HHhccccc--ch---HHHHHHHHHHHHHHHHHHHHhHHHHH-hh----hhhcC---C-CcCCCeeeHHHHHHHHHH
Confidence             11 11111111  11   12222 33444555555565553322 12    22221   1 222322   223344789


Q ss_pred             HhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccccccccCCCCCCCCCCCccchhhhHH
Q 007555          306 IAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLD-RAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (598)
Q Consensus       306 i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (598)
                      ++|+.++|.+....+....+.+.++..+..    .   .....+  ++.+ ..++...++...  ... ..........+
T Consensus       172 ~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~----~---~~~~~~--~E~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~  239 (468)
T TIGR00788       172 LISSLLGGPLLDKTLTRILFLITAALLLLQ----L---FVSNLS--KERRAFVRPRIGTYLEM--NMA-LLTLGVLANVK  239 (468)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHHHHH----H---HHHHhc--ccccccccccccccchh--hhh-hhhhhHHHHHH
Confidence            999999999998777654333322211111    1   011111  1111 000000000000  000 00000000112


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHH-HHHhhhhhhHHHHHHH---HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007555          385 AIKLGWKEYMQQPVLPASLAYVLL-CLNVVLTPGSLMTAFL---TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (598)
Q Consensus       385 ~i~eG~~~~~~~pvll~~l~~~lL-~~~vll~f~~l~~~yl---~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg  460 (598)
                      +...+++..+++|.+...+++.++ |...   .+.....|.   ..+|+++..+|.+.+.+++++++|..+++++.||++
T Consensus       240 ~~~~~l~~~l~~~~i~~~l~fifl~~~~~---~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~  316 (468)
T TIGR00788       240 VQILGLRGAIQLLEIAKPLIFIFLSYANL---PGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFP  316 (468)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHHhhc---CCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            222344445777877665555555 4322   222222221   258999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH--HhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHH
Q 007555          461 ILKAGAAGLIFQASLLAMAVAV--YWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISV  538 (598)
Q Consensus       461 ~~r~g~~~l~~q~~~L~~~v~~--~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl  538 (598)
                      ..+...++......+...-...  -|.......... ...+..++..++.....++.+.++++.+|++..|..+|+.+++
T Consensus       317 ~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~  395 (468)
T TIGR00788       317 YRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEV-FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASI  395 (468)
T ss_pred             HHHHHHHHHHHHHHHHhCceeeeeccccccCCCCee-eeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHH
Confidence            8776655443322111000000  010000000010 1111112222233345677899999999999999999999999


Q ss_pred             HHHHHHHHH
Q 007555          539 ASLVESVML  547 (598)
Q Consensus       539 ~~~~~ll~~  547 (598)
                      .++...++.
T Consensus       396 ~~lg~~v~~  404 (468)
T TIGR00788       396 LHLGSSVSG  404 (468)
T ss_pred             HHHHHHHHH
Confidence            988864443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09952 shikimate transporter; Provisional

Probab=99.26  E-value=3.2e-08  Score=108.41  Aligned_cols=132  Identities=14%  Similarity=0.048  Sum_probs=74.9

Q ss_pred             HHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Q 007555          418 SLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLF  496 (598)
Q Consensus       418 ~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~  496 (598)
                      ..++.|+. +.|+++.....+....++.++++..+.+++.+|+|..|...++......+...  ........  .....+
T Consensus       271 ~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~  346 (438)
T PRK09952        271 AFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFP--FFMALEAQ--SIFWIV  346 (438)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH--HHHHHHcC--ChHHHH
Confidence            45566765 47888876665555667777888889999999999877655443222111100  01111110  111111


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHH-H-HHHHHHhhhhcc
Q 007555          497 FLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASL-V-ESVMLGVAIIAN  554 (598)
Q Consensus       497 ~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~-~-~ll~~~~~i~~~  554 (598)
                       ..+..+..++..........+..|..|.+.|+...+....+... . -..+++.+.+.+
T Consensus       347 -~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~  405 (438)
T PRK09952        347 -FFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVT  405 (438)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11122222222233445667889999999999998887766552 2 245666666554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.25  E-value=1.8e-08  Score=109.81  Aligned_cols=330  Identities=14%  Similarity=0.090  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeec----cCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007555          168 FAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMD----HSPRIP-AYICLNTVQAAAQLLSAAMIIHAHTVIP  241 (598)
Q Consensus       168 fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvD----R~~Rr~-vmi~~d~~q~~~v~ls~~~l~~~~~~~~  241 (598)
                      .-++-|..+..+ ++..+|+..++..+--.+..|+.|.+.|    |++||| .|...-+.    .+++..+ .+  ..++
T Consensus        22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~----~~~~~~l-lf--~~~p   94 (428)
T PF13347_consen   22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAIL----LALSFFL-LF--SPPP   94 (428)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHH----HHHHHHH-hh--cccc
Confidence            344455566678 9999999998888888999999999999    787666 44433221    1222212 22  1111


Q ss_pred             -CCccchHHHH-HHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 007555          242 -TSSSMLLHPW-FFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKY  319 (598)
Q Consensus       242 -~~~~~l~~~l-~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~  319 (598)
                       +.+......| ++..++....-+++++.+.     .+.|.+.++  +++-++.++..+....+..++...+.+.++..+
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~-----al~~~lt~~--~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~  167 (428)
T PF13347_consen   95 AGLSFTAKLVWLFVFYILFDIAYTFVQIPYN-----ALIPELTPD--PDERTRLSSWRMIFSMIGSLLASFLAPILVSWF  167 (428)
T ss_pred             chhhhhhHHHHHHHHHHHHHHhhhhccCchh-----hcCcccccc--HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence             0111111112 2223333444444444443     255667764  347888888888888888877888888887766


Q ss_pred             chh----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhc
Q 007555          320 EPV----TCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQ  395 (598)
Q Consensus       320 ~~~----~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~  395 (598)
                      +..    ..........+...+..+   .....+  ++  ++++. +       +   +      .....+++.++..++
T Consensus       168 g~~~~~~~~~~~~~v~~iv~~v~~~---i~~~~~--ke--~~~~~-~-------~---~------~~~~~~~~~~~~~~~  223 (428)
T PF13347_consen  168 GGGDTSNGYRWMALVLAIVGLVFFL---ITFFFV--KE--RSVEV-T-------E---Q------EKKISLRDSLRSLFR  223 (428)
T ss_pred             ccCccchHHHHHHHHHHHHHHHHhh---hhhhee--ee--ccccc-c-------c---c------ccccccccchhhhcc
Confidence            532    111211111111111111   111111  11  00000 0       0   0      001124566788889


Q ss_pred             CCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 007555          396 QPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQAS  474 (598)
Q Consensus       396 ~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~  474 (598)
                      ||.++..+...++.........+..+.|.+. .|.+ ...+.+..+..++++++..+.+++.||+|..|....+......
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAAL  302 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHH
Confidence            9988875555444332212334455556554 5555 6788888999999999999999999999988876655443221


Q ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCC-------ccchhHHHHHHHHHHHHH
Q 007555          475 LLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPS-------SKANLIGTTEISVASLVE  543 (598)
Q Consensus       475 ~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~-------~~rGRV~sv~~sl~~~~~  543 (598)
                         ..+...+.+.. +   ...+....++.++|...+.....+++-+.++.       +.-|.++|+.....+...
T Consensus       303 ---~~~~~~~~~~~-~---~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~  371 (428)
T PF13347_consen  303 ---GFLLLFFLGPG-S---PWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQ  371 (428)
T ss_pred             ---HHHHHHHHHhh-h---HHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHH
Confidence               11112222210 1   11122233344455555666777777777764       345888888777777664

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.23  E-value=1.5e-07  Score=102.58  Aligned_cols=151  Identities=9%  Similarity=-0.034  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHH
Q 007555          149 LYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQL  227 (598)
Q Consensus       149 f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~  227 (598)
                      |..+...-++--+.+.+....+|-+. +..+ |..+.+.......+..++.++++|.+.||++||++++..-++..+.  
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~-~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g--   81 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQ-QAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG--   81 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH--
Confidence            34444444555566666666677664 4455 9999999999999999999999999999999999998776543322  


Q ss_pred             HHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHh
Q 007555          228 LSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIA  307 (598)
Q Consensus       228 ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~  307 (598)
                        +.+.......    .+  .+.+++..++.|+...+..++.+..+.     .+.++   ++-.+..+..+....+...+
T Consensus        82 --~~l~~~~~~~----~~--~~~~l~~~~l~G~g~g~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~lG~~~  145 (410)
T TIGR00885        82 --AFLFWPAAEI----MN--YTLFLVGLFILTAGLGFLETAANPYIL-----VMGPE---STATRRLNLAQSFNPFGSII  145 (410)
T ss_pred             --HHHHHHHHhh----cc--HHHHHHHHHHHHhhHHHHHhhhhHHHH-----HHCCH---hHHHHHHHHHHHHHHHHHHH
Confidence              1111111111    11  233444445555555555444433221     14443   25677888889999999999


Q ss_pred             hHHHHHHHHhh
Q 007555          308 GASLFGILLSK  318 (598)
Q Consensus       308 GP~lgGlL~s~  318 (598)
                      ||.+++.++..
T Consensus       146 g~~i~~~l~~~  156 (410)
T TIGR00885       146 GMVVAQQLILS  156 (410)
T ss_pred             HHHHHHHHHhc
Confidence            99999998753

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00898 2A0119 cation transport protein

Probab=99.23  E-value=1.8e-08  Score=111.65  Aligned_cols=323  Identities=14%  Similarity=0.054  Sum_probs=155.6

Q ss_pred             hhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHH
Q 007555          181 LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGA  260 (598)
Q Consensus       181 ~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~  260 (598)
                      ....++...+..+..++.+++.|.++||++||++++.+.++..+.    ..+..+  ..     +  .+.+++.-++.|.
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~----~~~~~~--~~-----~--~~~~~~~r~l~G~  192 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVS----GVLTAF--SP-----N--YTVFLVFRLLVGM  192 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHH----HHHHHH--cc-----c--HHHHHHHHHHHHh
Confidence            667788888888899999999999999999999998776543222    111111  11     1  2334444444554


Q ss_pred             HHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 007555          261 VERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMI  340 (598)
Q Consensus       261 i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~  340 (598)
                      ......+.... +-.|    .++++   +..++++..+....+..+++|.+++.+..+ .  ....+...   ..++..+
T Consensus       193 ~~~~~~~~~~~-~~~e----~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~~~~w-r--~~~~~~~i---~~~~~~~  258 (505)
T TIGR00898       193 GIGGIWVQAVV-LNTE----FLPKK---QRAIVGTLIQVFFSLGLVLLPLVAYFIPDW-R--WLQLAVSL---PTFLFFL  258 (505)
T ss_pred             hccchHHHHHH-Hhhe----ecChh---hhHHHHHHHHHHHHHHHHHHHHHHHHhhHH-H--HHHHHHHH---HHHHHHH
Confidence            44433333322 2233    44442   567888888888888899999988877652 1  11111111   1111111


Q ss_pred             HHHHHHHhhccccc--ccccccc--c---ccCCCCCCCCCCCccchhhhHHH---H--HHHHHHHhcCCchHHHHHHH-H
Q 007555          341 ILTWFTNKISSGVL--DRAKCSQ--S---CCRTSNEGPVPDADNIVDVGIEA---I--KLGWKEYMQQPVLPASLAYV-L  407 (598)
Q Consensus       341 l~~~li~rv~~~~l--~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~---i--~eG~~~~~~~pvll~~l~~~-l  407 (598)
                       ..+.+.+  .|..  .+.+.++  +   +..+.+....++. .......++   -  +.+++..+++|.++..+... .
T Consensus       259 -~~~~~~e--sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  334 (505)
T TIGR00898       259 -LSWFVPE--SPRWLISQGRIEEALKILQRIAKINGKKLPAE-VLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMM  334 (505)
T ss_pred             -HHHhcCC--ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHH-HHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHH
Confidence             1011110  0000  0000000  0   0000000000000 000000000   0  13566778888776644332 2


Q ss_pred             HHHHhhhhhhH-HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007555          408 LCLNVVLTPGS-LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSG  486 (598)
Q Consensus       408 L~~~vll~f~~-l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g  486 (598)
                      .++..  .+.. .+..+....+.+.....   ...++.++.|.++.+++.+|+|..+...++......+   .+......
T Consensus       335 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~---~l~~~~~~  406 (505)
T TIGR00898       335 LWFTT--AFSYYGLVLDLGNLGGNIYLDL---FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVA---LLLLLFVP  406 (505)
T ss_pred             HHHHH--HHHHHHHhccccccCCChHHHH---HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHHHHHcC
Confidence            22221  1111 11112223455543333   3445667778888888999988766555433222111   11111111


Q ss_pred             ccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH
Q 007555          487 SLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM  546 (598)
Q Consensus       487 ~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~  546 (598)
                      ..  .......  ...+..++..........+.+|..|++.||+..|+.++...+...++
T Consensus       407 ~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~  462 (505)
T TIGR00898       407 VD--LYFLRTA--LAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIIS  462 (505)
T ss_pred             CC--chHHHHH--HHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHH
Confidence            11  1111111  11122222222334556788999999999999999998887775333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.22  E-value=1.8e-08  Score=110.42  Aligned_cols=338  Identities=10%  Similarity=0.006  Sum_probs=152.9

Q ss_pred             ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCccchHHHHHHHHHHH
Q 007555          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAH-TVIPTSSSMLLHPWFFVLVLA  258 (598)
Q Consensus       180 S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~-~~~~~~~~~l~~~l~vv~~ll  258 (598)
                      +....+....+..+..++.+++.|.+.||++|||++..+.++-.+...+.. ...+.. .... .+....+.+++.=++.
T Consensus        53 ~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~-~~~~~~~~~~~-~~~~~~~~l~~~R~l~  130 (479)
T PRK10077         53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSA-WPEFGFTSIGP-DNTGYVPEFVIYRIIG  130 (479)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-hhccccccccc-cchhHHHHHHHHHHHH
Confidence            677888888888999999999999999999999999887654322211110 000000 0000 0010111222222334


Q ss_pred             HHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHh--------hhchhHHHHHHHH
Q 007555          259 GAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLS--------KYEPVTCLKFAAG  330 (598)
Q Consensus       259 g~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s--------~~~~~~~l~~~~~  330 (598)
                      |.......+... ++-.||    .+++   +..++-+..+....+..+++|.+++.+..        ..|......+...
T Consensus       131 G~~~g~~~~~~~-~~i~e~----~~~~---~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~  202 (479)
T PRK10077        131 GIGVGLASMLSP-MYIAEI----APAH---IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAI  202 (479)
T ss_pred             hhhHhHHhhHHH-HHHHhh----CChh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHH
Confidence            443333333332 222454    3332   56677777777777778888877766542        1232221221111


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccc---cccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhc-C-CchHH---H
Q 007555          331 LIMWSLPVMIILTWFTNKISSGVLDRA---KCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQ-Q-PVLPA---S  402 (598)
Q Consensus       331 ~~~~S~~~~~l~~~li~rv~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~-~-pvll~---~  402 (598)
                         ..++. .   .....+  |+.++.   +...++.+... +.... ....+...+++++.++.-.+ . +.+..   .
T Consensus       203 ---~~~~~-~---~~~~~l--~~s~~~l~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (479)
T PRK10077        203 ---PALLF-L---MLLYFV--PETPRYLMSRGKQEQAEGIL-RKIMG-NTLATQALQEIKHSLDHGRKTGGKLLMFGVGV  271 (479)
T ss_pred             ---HHHHH-H---HHHHcC--CCCcHHHHHcCCHHHHHHHH-HHHcC-ChhHHHHHHHHHHHHHHhhhhhhhhcchhHHH
Confidence               11111 1   111111  211110   00000000000 00000 00011222333333221010 1 11110   0


Q ss_pred             HHHHHH--HHHhhhhhhH---HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 007555          403 LAYVLL--CLNVVLTPGS---LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLA  477 (598)
Q Consensus       403 l~~~lL--~~~vll~f~~---l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~  477 (598)
                      +.....  .+.....+..   ..+.+..+.|++....+......++++++++++.+++.+|+|..+...++......+..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~  351 (479)
T PRK10077        272 IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF  351 (479)
T ss_pred             HHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHH
Confidence            111111  1110001111   11223345788776666666677788889999999999999876655544332211111


Q ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHhhhhh-hhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          478 MAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHM-SYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       478 ~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~-~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      . .........   ...+... ++.....+.. .+......+.+|..|+++||+..|+..++++...
T Consensus       352 ~-l~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~  413 (479)
T PRK10077        352 S-LGTAFYTQA---PGIVALL-SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIAN  413 (479)
T ss_pred             H-HHHHHhcCc---ccHHHHH-HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHH
Confidence            1 111111111   1111111 1111111111 1234457889999999999999999999888775

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.21  E-value=8.3e-08  Score=106.67  Aligned_cols=130  Identities=13%  Similarity=0.031  Sum_probs=75.0

Q ss_pred             HHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh-hcccccchhHH
Q 007555          418 SLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW-SGSLSQQNPLL  495 (598)
Q Consensus       418 ~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~-~g~~~~~~~~~  495 (598)
                      ..++.|+. ..|+++...+.......++.++|..+.+++.+|+|..+....+...   +...+...+. ....  ....+
T Consensus       271 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~  345 (490)
T PRK10642        271 TYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVA---LFVLAIPAFILINSN--VIGLI  345 (490)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHHHHHHHHHhCC--CHHHH
Confidence            45666775 4699888778777888889999999999999999987655433221   1111111111 1111  11111


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH-HHHHHHhhhhcc
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV-ESVMLGVAIIAN  554 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~-~ll~~~~~i~~~  554 (598)
                        ..+.++..++...+.-....+..+..|++.||+..|+...+.... .+.+++.+.+..
T Consensus       346 --~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~  403 (490)
T PRK10642        346 --FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVE  403 (490)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              111111112211223344566678899999999888765555544 356666665544

>PRK11462 putative transporter; Provisional

Probab=99.19  E-value=5.1e-07  Score=99.98  Aligned_cols=270  Identities=10%  Similarity=-0.007  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccC----CchH-HHHHHHHHHHHHHH
Q 007555          154 ACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS----PRIP-AYICLNTVQAAAQL  227 (598)
Q Consensus       154 ~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~----~Rr~-vmi~~d~~q~~~v~  227 (598)
                      .|.+-..+-..+...=+..|..+..| ++..+|..-++..+-=.+.-|+.|.++||.    +||| -|...-+    ..+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i----~~~   91 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGAL----PFG   91 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHH----HHH
Confidence            44444444444444445556667778 888888888887777789999999999974    4544 4443322    212


Q ss_pred             HHHHHHHHHhhhccCCccchHHHHHH-HHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHH
Q 007555          228 LSAAMIIHAHTVIPTSSSMLLHPWFF-VLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (598)
Q Consensus       228 ls~~~l~~~~~~~~~~~~~l~~~l~v-v~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i  306 (598)
                      +++.+ +|  ..+. .+......|+. .-.+....-++.++.+..     |.|.+.++  +++-++.++.-+....+..+
T Consensus        92 i~~~l-lf--~~p~-~s~~~~~~y~~~~~~~~~~~~t~~~ipy~a-----l~~~lt~d--~~eRt~l~s~r~~~~~iG~~  160 (460)
T PRK11462         92 IVCVL-AY--STPD-LSMNGKMIYAAITYTLLTLLYTVVNIPYCA-----LGGVITND--PTQRISLQSWRFVLATAGGM  160 (460)
T ss_pred             HHHHH-HH--hCCC-CCcchHHHHHHHHHHHHHHHHHHHhccHHH-----HHHHhcCC--HHHHHHHHHHHHHHHHHHHH
Confidence            23222 22  1211 11111112222 222334444555554433     45557653  46888999998888888888


Q ss_pred             hhHHHHHHHHhhhchh---H-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhh
Q 007555          307 AGASLFGILLSKYEPV---T-CLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVG  382 (598)
Q Consensus       307 ~GP~lgGlL~s~~~~~---~-~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (598)
                      ++|.++..+....|-.   . .........+...+...   .+...  .++  +.+++            +++    .  
T Consensus       161 ~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~---i~~~~--~kE--~~~~~------------~~~----~--  215 (460)
T PRK11462        161 LSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA---FCFFT--TKE--RVEAP------------PTT----T--  215 (460)
T ss_pred             HHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH---HHHhc--cee--ccCCC------------ccC----C--
Confidence            8888887777655411   0 11111111111111110   11111  111  10000            000    1  


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007555          383 IEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI  461 (598)
Q Consensus       383 ~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~  461 (598)
                        .+++.++..++++.++..+...++++.......+.++.|.+. .| ++...+.+.+..++++++|+.+.+++.+|++.
T Consensus       216 --~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gk  292 (460)
T PRK11462        216 --SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCK  292 (460)
T ss_pred             --CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence              145667778888888765444333322212344455555554 34 34466777888889999999999999999886


Q ss_pred             hHHHH
Q 007555          462 LKAGA  466 (598)
Q Consensus       462 ~r~g~  466 (598)
                      .+...
T Consensus       293 k~~~~  297 (460)
T PRK11462        293 VTIFW  297 (460)
T ss_pred             HHHHH
Confidence            55544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.17  E-value=2.8e-07  Score=102.92  Aligned_cols=162  Identities=10%  Similarity=-0.086  Sum_probs=103.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeecc-CCchHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDH-SPRIPAYICLNTVQ  222 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR-~~Rr~vmi~~d~~q  222 (598)
                      |+|.++.++..++...++-....--++.|+....+ +....+.......+-..++.+++|.+.|| ++|||+++...++.
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~   91 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL   91 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence            67788999999999888888888888888887777 66555544444444455667789999999 99999998877653


Q ss_pred             HHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHH
Q 007555          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (598)
Q Consensus       223 ~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~  302 (598)
                      .+.   +..+ .+  ...   ..   ..+++..++.+....+..+.... +-.|    ..++++ ++..++-+.....-.
T Consensus        92 ~~g---~~~~-~~--~~~---~~---~ll~~~~~l~~ig~g~~~~~~~~-li~~----~~p~~~-~~~~~~~~~~~~~~n  153 (489)
T PRK10207         92 AIG---YFMT-GM--SLL---KP---DLIFIALGTIAVGNGLFKANPAS-LLSK----CYPPKD-PRLDGAFTLFYMSIN  153 (489)
T ss_pred             HHH---HHHH-HH--hcc---ch---hHHHHHHHHHHhccccccCCHHH-HHHH----hcCCCc-hhhhcchhHHHHHHH
Confidence            332   1111 11  110   01   12333344444444444433332 2234    333331 245567777777888


Q ss_pred             HHHHhhHHHHHHHHhhhchhHH
Q 007555          303 LCEIAGASLFGILLSKYEPVTC  324 (598)
Q Consensus       303 ~~~i~GP~lgGlL~s~~~~~~~  324 (598)
                      ++..+||.++|.+....|....
T Consensus       154 ig~~~g~~l~g~l~~~~gw~~~  175 (489)
T PRK10207        154 IGSLISLSLAPVIADKFGYSVT  175 (489)
T ss_pred             HHHHHHHHHHHHHHHhhChHHH
Confidence            8999999999999988885443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.13  E-value=7.3e-07  Score=99.86  Aligned_cols=165  Identities=10%  Similarity=-0.087  Sum_probs=100.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeecc-CCchHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDH-SPRIPAYICLNTVQ  222 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR-~~Rr~vmi~~d~~q  222 (598)
                      +++.+..++...+...++-.....-++.|+....+ |....+..............+++|.+.|| ++||+++...-++.
T Consensus        19 ~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~   98 (500)
T PRK09584         19 QPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVL   98 (500)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            45678889999999999888888888889877777 76655444443333444556789999999 59999888765432


Q ss_pred             HHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHH
Q 007555          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (598)
Q Consensus       223 ~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~  302 (598)
                      .+.    ..  ......    ..  .+.+++..++.+....++.+.... +-.+|    .+++ +.+..++-+.......
T Consensus        99 ~ig----~~--l~~~~~----~~--~~~l~~~~~l~gig~g~~~~~~~~-l~~~~----f~~~-~~~~~~~~~~~~~~~~  160 (500)
T PRK09584         99 AIG----YA--LVAWSG----HD--AGIVYMGMATIAVGNGLFKANPSS-LLSTC----YEKD-DPRLDGAFTMYYMSIN  160 (500)
T ss_pred             HHH----HH--HHHHhc----cc--HHHHHHHHHHHHHhhhcccCCHHH-HHHHh----cCCC-chhhhhcchHHHHHHH
Confidence            221    11  111111    01  112233333444444444333322 22332    2332 2245566677777788


Q ss_pred             HHHHhhHHHHHHHHhhhchhHHHHH
Q 007555          303 LCEIAGASLFGILLSKYEPVTCLKF  327 (598)
Q Consensus       303 ~~~i~GP~lgGlL~s~~~~~~~l~~  327 (598)
                      ++..+||.++|.+....|.......
T Consensus       161 iG~~~gp~i~g~l~~~~g~~~~F~i  185 (500)
T PRK09584        161 IGSFFSMLATPWLAAKYGWSVAFAL  185 (500)
T ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            8999999999999887775543333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.10  E-value=1.1e-06  Score=95.73  Aligned_cols=187  Identities=14%  Similarity=0.067  Sum_probs=113.2

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007555          389 GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRG-LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAA  467 (598)
Q Consensus       389 G~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg-~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~  467 (598)
                      .++ ++|+|.++.-+..+.+....-..+.+....|+++.| ++....|...+.+.+.++.-=+..+++.||+|..+....
T Consensus       200 ~~~-llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~  278 (400)
T PF03825_consen  200 ALK-LLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLL  278 (400)
T ss_pred             HHH-HhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            344 778887765444433332111345556677888887 888889999999999999999999999999998877665


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH--HH
Q 007555          468 GLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE--SV  545 (598)
Q Consensus       468 ~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~--ll  545 (598)
                      +......    =...+...+.+......+...+..+-++..-.+-.....++.+.+|++.|++..++..++.++.-  .+
T Consensus       279 a~~~~~v----R~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG  354 (400)
T PF03825_consen  279 ALVAYAV----RWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG  354 (400)
T ss_pred             HHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence            4322111    00111111110011111111112222222335677889999999999999999999999988773  55


Q ss_pred             HHHhhhhccCcc---hhHHHHHHHHHHHHHHHHHHHHH
Q 007555          546 MLGVAIIANDVS---HFGFLATLSLLSVVGAAWMFCHW  580 (598)
Q Consensus       546 ~~~~~i~~~~~~---~f~~l~l~S~~~V~~a~~l~~~~  580 (598)
                      +++.|.+.+...   .|.+..+..+.++.........+
T Consensus       355 ~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~  392 (400)
T PF03825_consen  355 SLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV  392 (400)
T ss_pred             HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            667777776543   33444444444444333333333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.03  E-value=2.2e-06  Score=94.55  Aligned_cols=360  Identities=13%  Similarity=0.047  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCch----H-HHHHHHHHHHHHHHHHH
Q 007555          157 LAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRI----P-AYICLNTVQAAAQLLSA  230 (598)
Q Consensus       157 ~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr----~-vmi~~d~~q~~~v~ls~  230 (598)
                      +-+.+.-.+...=+.-|-.+..| |+..+|..-++..+-=.+.-|+.|.++||.++|    | -+...-+    ..++.+
T Consensus        22 ~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i----p~~i~~   97 (467)
T COG2211          22 FASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI----PFAIVA   97 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH----HHHHHH
Confidence            33333334444444555567777 888888888888888899999999999987543    3 3332221    212222


Q ss_pred             HHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHH
Q 007555          231 AMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGAS  310 (598)
Q Consensus       231 ~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~  310 (598)
                      .+ .|.  .++-+...-....++.-++++..-++-+..+.     .+.|++..+  +++.++.|++-+....++.++--.
T Consensus        98 ~l-~F~--~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~-----al~~~iT~d--~~ER~~l~s~R~~~~~~g~~l~~~  167 (467)
T COG2211          98 VL-LFI--TPDFSMTGKLIYALVTYMLLGLGYTLVNIPYG-----ALGPEITQD--PQERASLTSWRMVFASLGGLLVAV  167 (467)
T ss_pred             HH-HHc--CCCcccCcchHHHHHHHHHHHHHHHheeCchh-----hcchhhcCC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 221  11101011111122333334433333333332     256667653  568899999999888888777777


Q ss_pred             HHHHHHhhhchhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHH
Q 007555          311 LFGILLSKYEPVT---CLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIK  387 (598)
Q Consensus       311 lgGlL~s~~~~~~---~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  387 (598)
                      +.+.+++.++...   +.....+.  +.+...++..++...++++    ..+.++           ..    ++...+.+
T Consensus       168 ~~~plv~~~g~~~~~~g~~~~~~~--~~vi~~i~~l~~~~~v~ER----~~~~~~-----------~~----~~~~~~~~  226 (467)
T COG2211         168 LFPPLVKLFGGGDKALGYQGTALV--LGVIGVILLLFCFFNVKER----VVETQP-----------TK----TGVKLKLK  226 (467)
T ss_pred             HHHHHHHHhCCCcchhhHHHHHHH--HHHHHHHHHHHHHHHhhcc----cCcccc-----------Cc----ccccccHH
Confidence            7777777766432   22222221  2222222222333333211    110000           00    01223445


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007555          388 LGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGA  466 (598)
Q Consensus       388 eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~  466 (598)
                      +-+...++++.++..+...++.+......++.++.|.+ .+|.++...+........+.+++..+.|++.||+|..+...
T Consensus       227 ~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~  306 (467)
T COG2211         227 DSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL  306 (467)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH
Confidence            55667788888876555444433332224456666666 48888888888889999999999999999999999888777


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCc-------cchhHHHHHHHHH
Q 007555          467 AGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSS-------KANLIGTTEISVA  539 (598)
Q Consensus       467 ~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~-------~rGRV~sv~~sl~  539 (598)
                      ++...   ..+..+..++.+.  +...++++  ..+...+|....+....+++=+.++.+       .-|-++|.+....
T Consensus       307 ~~~~~---~~i~~~~~~f~~~--~~~~l~~~--~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~  379 (467)
T COG2211         307 IGLLL---LAVGYLLLYFTPA--GSVVLIVV--ALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFR  379 (467)
T ss_pred             HHHHH---HHHHHHHHHhhcC--cchHHHHH--HHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHH
Confidence            65331   1122223333331  11222222  222333454455666666666666543       3345555544444


Q ss_pred             HHHH-----HHHHHhhhhccCcch
Q 007555          540 SLVE-----SVMLGVAIIANDVSH  558 (598)
Q Consensus       540 ~~~~-----ll~~~~~i~~~~~~~  558 (598)
                      .+..     ..+.+++.++-.|+.
T Consensus       380 K~g~ala~~~~g~~L~~~Gyv~~~  403 (467)
T COG2211         380 KLGLALAGFIPGWILGAIGYVPNV  403 (467)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCc
Confidence            3332     233344455555555

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.02  E-value=3.5e-07  Score=99.57  Aligned_cols=362  Identities=13%  Similarity=0.102  Sum_probs=180.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCC-chHHHHHHHHH
Q 007555          144 AHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSP-RIPAYICLNTV  221 (598)
Q Consensus       144 ~r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~-Rr~vmi~~d~~  221 (598)
                      .++++|+.+-...+.--+.-.++.==+|+|+.+.-| |...+|+.-.+..+..+++.|+.|.+.||.. ||++++..-+ 
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~-   82 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAI-   82 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHH-
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHH-
Confidence            355677766555555555544444444667777678 9999999999999999999999999999997 5555543322 


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHH----HHH
Q 007555          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKAN----AVL  297 (598)
Q Consensus       222 q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aN----a~l  297 (598)
                        +. ++.++...+....      ++...+++.+++-+..-.++-.+....+|.     .+     ++..|.|    ++.
T Consensus        83 --l~-~l~~pff~~v~~p------ll~~n~~lg~iig~i~l~~~f~~~~~~~Ea-----~~-----er~sr~~~feYG~~  143 (412)
T PF01306_consen   83 --LL-LLFGPFFIYVFGP------LLQSNFWLGAIIGGIYLGLVFNAGVPLSEA-----YA-----ERVSRRNGFEYGRA  143 (412)
T ss_dssp             --HH-HTCHHHHHHTHHH------HHHTT-HHHHHHTTTTTTTTTTTHHHHHHH-----HH-----HHHHHHHSS-HHHH
T ss_pred             --HH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHcccchHHHH-----HH-----HHHHHHhcCCcchH
Confidence              11 1112221221100      000001111111111001111111112221     11     1233333    566


Q ss_pred             HHHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCcc
Q 007555          298 NRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADN  377 (598)
Q Consensus       298 ~~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~  377 (598)
                      |.=-+++-.++..++|.+++. ++....+...+    ......+. ....|   |  +++++.+.  .+   .. .. + 
T Consensus       144 R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~----~~~il~ll-l~~~~---~--~~~~~~~~--~~---~~-~~-~-  204 (412)
T PF01306_consen  144 RMWGSIGFAIASLLAGILFNI-NPNIIFWIASA----AAIILLLL-LLLLK---P--DVPPQAEV--AD---AL-GA-K-  204 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHH-HHSS--------SSSSS-S--ST---TS-SS---
T ss_pred             HHHhhHHHHHHHHHhheeeee-CccHHHHHHHH----HHHHHHHH-HHHcC---C--cCchhhhh--hc---cc-cc-C-
Confidence            777789999999999999984 43332332211    11111111 11122   1  11111000  00   00 00 0 


Q ss_pred             chhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH----hcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007555          378 IVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT----QRGLNPSIIGGFSGLCASMGVAATFLSA  453 (598)
Q Consensus       378 ~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~----~lg~s~~~iG~~~g~gavgGLlGtl~~~  453 (598)
                       .+..  .+++ ....+|.|.+...+++....-.....++.+...|.+    +.+.+...+|...+.+.+.+.+.=..+|
T Consensus       205 -~~~~--~~~~-~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p  280 (412)
T PF01306_consen  205 -KDKV--SLKD-VLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSP  280 (412)
T ss_dssp             --------HHH-HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCC--cHHH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHH
Confidence             0010  1222 344778887765444333222222346767777765    3466778899999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHH
Q 007555          454 YLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGT  533 (598)
Q Consensus       454 ~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~s  533 (598)
                      ++.||+|..+..+++..      ++++=....+...  .+..+.. .=.+-.+-..++-+....++++..|++...++..
T Consensus       281 ~li~rig~k~~Lllag~------i~~iRi~~~~~~~--~~~~i~~-~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~  351 (412)
T PF01306_consen  281 WLINRIGAKNLLLLAGV------IMAIRIIGSGFAT--NPWVISL-IKLLHALEFPLLLVAAFKYITAHFDKRLSATLYL  351 (412)
T ss_dssp             HHHHHH-HHHHHHHHHH------HHHHHHHHHHT----SHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHH
T ss_pred             HHHHhcChHhHHHHHHH------HHHHHHHHHhhhc--chHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHH
Confidence            99999999876654321      1110011111100  1111111 1112223344667888999999999987777666


Q ss_pred             HHHHHHHHH--HHHHHHhhhhccCcchhH
Q 007555          534 TEISVASLV--ESVMLGVAIIANDVSHFG  560 (598)
Q Consensus       534 v~~sl~~~~--~ll~~~~~i~~~~~~~f~  560 (598)
                      +...+....  ..++...|..   .|++|
T Consensus       352 v~~~~~~~~~~~i~s~~~G~l---yd~~G  377 (412)
T PF01306_consen  352 VGFQFAKQIGIIILSPLAGYL---YDRIG  377 (412)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHhh---HhhcC
Confidence            654333333  2344444444   45554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.01  E-value=1.2e-05  Score=89.17  Aligned_cols=151  Identities=6%  Similarity=-0.035  Sum_probs=92.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       146 ~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      +|++..-|.+-+++.+.-.++.-..+-+.-...+ |..+.+.....-.+...++-.+.|.++||++.|+++..+-++-.+
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            3678888888888887777777766665554577 888899888888888888878889999999999988776543211


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHH---
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID---  301 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id---  301 (598)
                            +.+...+...+..++  ++.+++.-++.|.....+.... ..+ +.|-    ++   ++..++++.....-   
T Consensus       113 ------~~~~~~~a~~~~~~s--~~~lli~r~l~Gigg~~f~~~~-~~v-s~wf----p~---~~rG~A~Gi~~g~G~~G  175 (462)
T PRK15034        113 ------PCVWLGIAVQNPNTP--FGIFIVIALLCGFAGANFASSM-GNI-SFFF----PK---AKQGSALGINGGLGNLG  175 (462)
T ss_pred             ------HHHHHHHHHcccCCC--HHHHHHHHHHHHHHHHhHHHHH-HHH-HHHC----CH---hHhHHHHHHHHHHHhhH
Confidence                  111111111100012  3455666666666544444333 223 3343    33   36778888885443   


Q ss_pred             -HHHHHhhHHHHH
Q 007555          302 -LLCEIAGASLFG  313 (598)
Q Consensus       302 -~~~~i~GP~lgG  313 (598)
                       .++++++|.+.+
T Consensus       176 ~~l~~~l~p~~i~  188 (462)
T PRK15034        176 VSVMQLVAPLVIF  188 (462)
T ss_pred             HHHHHHHHHHHHH
Confidence             344556666554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.99  E-value=5.8e-07  Score=96.85  Aligned_cols=403  Identities=15%  Similarity=0.101  Sum_probs=225.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      |-+.|.-.|.|...=-+.-.-+++|.|-++.+.-=|..++|+.+.+..+.+=+-=-..|.++||.|.|+.|-...+..++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai  106 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence            33457777888888888888889999877766544888899999998888888888899999999999988766543222


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                      +      .+++.  ..   ++  .+...+..++.|..+...-++....+.. |-|.   +||....    +.=+....+.
T Consensus       107 ~------nil~G--fs---~s--~~~~~~l~~lng~fQg~Gwpp~~~~i~~-Wfsr---~eRG~~~----siWn~shNiG  165 (448)
T COG2271         107 V------NILFG--FS---PS--LFLFAVLWVLNGWFQGMGWPPCARTITH-WFSR---KERGTWW----SIWNTSHNIG  165 (448)
T ss_pred             H------HHHHh--hh---hH--HHHHHHHHHHHHHHhcCCCcHHHHHHHH-HcCc---cccCceE----EEehhhhhcc
Confidence            2      11221  11   12  2344555566777777777766555432 5542   3332222    2222233344


Q ss_pred             HHhhHHHH--HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-cccccccCCCC-CCCCCCCccchh
Q 007555          305 EIAGASLF--GILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRA-KCSQSCCRTSN-EGPVPDADNIVD  380 (598)
Q Consensus       305 ~i~GP~lg--GlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~  380 (598)
                      .-+.|++.  |.+....+...++.+..++   +....+   +.+.+.+ +.|+.. -++.++.+++. +..+++..+..-
T Consensus       166 Gal~~~~~~la~~~~~~~w~~~f~~pgii---aiival---~~~~~~r-d~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~l  238 (448)
T COG2271         166 GALAPLVALLAFFAFHGGWRAAFYFPGII---AIIVAL---ILLFLLR-DRPQSEGLPPIEEYRGDPLEIYEEEKENEGL  238 (448)
T ss_pred             cchHHHHHHHHHHHhccchhHHHHHHHHH---HHHHHH---HHHHHhC-CCccccCCCCHHHhhcCchhhhhhhccCCCc
Confidence            44444455  5555444433333332211   111111   2233331 111110 00000001000 000000000001


Q ss_pred             hhHHHHHHHHHHHhcCCchHH-HHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007555          381 VGIEAIKLGWKEYMQQPVLPA-SLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRR  458 (598)
Q Consensus       381 ~~~~~i~eG~~~~~~~pvll~-~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rr  458 (598)
                      +.++.   =++|+++||.+.. .++..++|.-= .....=.+.|+.+ .|++...-+...+..-++|+.|+++.+++..|
T Consensus       239 s~~~i---~~~YVL~Nk~iW~la~a~vfvYivR-~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDk  314 (448)
T COG2271         239 TAWQI---FVKYVLKNKLIWLLALANVFVYVVR-YGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDK  314 (448)
T ss_pred             cHHHH---HHHHHHcChHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            12222   2688899997654 34445555432 1333457789886 79999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHH
Q 007555          459 LGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISV  538 (598)
Q Consensus       459 lg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl  538 (598)
                      +--.|.+...+.+. +.+..++..+|.....   ..++..+.....++.+..=+....-.-=|.+|.+--|...|.....
T Consensus       315 lfkgrR~p~~~i~~-~~i~~~~~~~w~~~~~---~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf  390 (448)
T COG2271         315 LFKGRRGPMALIFM-LLITASLVLYWLAPNG---SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLF  390 (448)
T ss_pred             hcccccchHHHHHH-HHHHHHHHHHHcCCCc---cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhH
Confidence            87665555444432 2334555566654321   1111111111111111111333444456889999999999999988


Q ss_pred             HHHH--HHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007555          539 ASLV--ESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLN  583 (598)
Q Consensus       539 ~~~~--~ll~~~~~i~~~~~~~f~~l~l~S~~~V~~a~~l~~~~l~~  583 (598)
                      +++.  .+....++.+.+...=.+..++..++++.+.+.+...|..+
T Consensus       391 ~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~~  437 (448)
T COG2271         391 AYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNAE  437 (448)
T ss_pred             HHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence            8884  24455556665553333444667777777766666666543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.98  E-value=3.6e-08  Score=104.64  Aligned_cols=336  Identities=17%  Similarity=0.074  Sum_probs=164.1

Q ss_pred             ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHH-HHHH
Q 007555          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFV-LVLA  258 (598)
Q Consensus       180 S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv-~~ll  258 (598)
                      +....|..+-.-.+-+.+-+|..|.+.||++||.++.+|.+.-    +++..  +|+...     +   ...+++ =++.
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~v----a~s~l--l~~~S~-----~---F~afv~aR~l~  131 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGV----ALSYL--LWALSR-----N---FAAFVLARFLG  131 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHH----HHHHH--HHHHHH-----H---HHHHHHHHHhh
Confidence            6777788888888889999999999999999999998886532    22221  232211     1   122333 1233


Q ss_pred             HHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh---chhHHHHHHHHHHHHH
Q 007555          259 GAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKY---EPVTCLKFAAGLIMWS  335 (598)
Q Consensus       259 g~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~---~~~~~l~~~~~~~~~S  335 (598)
                      |+..-.-++..  ++-.|    ++++   ++-.++-+.+....++.-++||++||.+-.+.   |-.+...-...+.+..
T Consensus       132 Gi~kgnl~v~r--Aiisd----V~se---k~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a  202 (451)
T KOG2615|consen  132 GIFKGNLSVIR--AIISD----VVSE---KYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILA  202 (451)
T ss_pred             hhccCchHHHH--HHHHh----hcCh---hhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHH
Confidence            33322222222  22234    5554   25668888999999999999999999997732   2111111111111111


Q ss_pred             HHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHH------HHHHH-HH
Q 007555          336 LPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPA------SLAYV-LL  408 (598)
Q Consensus       336 ~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~------~l~~~-lL  408 (598)
                      +.-..   ....++.++ ++.++..+++-... +..+ +++. ..++  +..+-.. ..|+|..+.      .+.+- ++
T Consensus       203 ~~~v~---~~~~~lpET-L~~rk~~~~~~~~~-~~~~-~~~~-~~~~--~~~~~v~-~lrn~p~~~~i~~~~i~~l~~~l  272 (451)
T KOG2615|consen  203 AGDVT---FFPWFLPET-LPLRKRNDEHSTLQ-EAAD-DRLA-LLKF--ARIFKVA-ALRNPPLLDFISVLRIFGLHYFL  272 (451)
T ss_pred             HHHHH---HHHHhCCcc-ccchhhcccccchh-hhhh-hhhh-hcch--hhhhhhh-hhcCccccchHHHHHHHHHHHHH
Confidence            11011   112222122 22111111100000 0000 0000 0000  0000111 134443332      11111 12


Q ss_pred             HHHhhhhhhHHHHHHHH--hcCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007555          409 CLNVVLTPGSLMTAFLT--QRGLNPSIIGGFSGLCASMGV-AATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWS  485 (598)
Q Consensus       409 ~~~vll~f~~l~~~yl~--~lg~s~~~iG~~~g~gavgGL-lGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~  485 (598)
                      |+.+ .+.......++.  ..|+++.+.|-+....+++++ +...++|++.+-.|..++.+..   ...+....++.+-.
T Consensus       273 y~~l-~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~---~l~~~vP~~llls~  348 (451)
T KOG2615|consen  273 YLEL-FSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLF---SLLLIVPAFLLLSL  348 (451)
T ss_pred             HHHH-HHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHH---HHHHHHHHHHHHhc
Confidence            2222 222222333443  369999999998888888875 4666677776655544333221   11222222222211


Q ss_pred             cccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccCcc
Q 007555          486 GSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIANDVS  557 (598)
Q Consensus       486 g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~~~  557 (598)
                      ...    +..+.++...-+-.+ ...-.+.+.++-+..|++.||.++|+.+|+...+- +++.+.|.++....
T Consensus       349 ~~~----~~~l~~~s~l~sf~~-A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~  416 (451)
T KOG2615|consen  349 ART----PVVLYLGSTLKSFST-ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQ  416 (451)
T ss_pred             ccc----chhhhHHHHHHHHHH-HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEec
Confidence            111    122222221111111 11123444555566799999999999999999996 55555566666543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.91  E-value=2.1e-05  Score=87.65  Aligned_cols=153  Identities=12%  Similarity=-0.037  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          150 YALYACCLAGNLVEQLWNFAWPSAIALLH----P-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       150 ~~L~~gq~lS~~G~~i~~fAlpL~v~~lt----~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      .....+++.-.+-..+..++.|.+--...    + +....+....+..+..++.+++.|.+.||++||+++..+.++-.+
T Consensus        19 ~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v   98 (502)
T TIGR00887        19 VIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMII   98 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            34455666666666666677776543221    1 334557777888888899999999999999999998766543222


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                      .   +  + +....... ......+.+++.-++.|.......+... ....+    ..++   +...++.+..+....+.
T Consensus        99 ~---~--~-~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g~~~~~~~-~~~~e----~~p~---~~Rg~~~~~~~~~~~~g  163 (502)
T TIGR00887        99 A---T--V-ASGLSPGS-SPKSVMATLCFWRFWLGVGIGGDYPLSA-IITSE----FATK---KWRGAMMAAVFAMQGFG  163 (502)
T ss_pred             H---H--H-HHHHccCc-ccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH----hcCh---hhHHHHHHHHHHHHHHH
Confidence            2   1  1 11111100 0000012334444444544443333332 22233    3443   26678999999888999


Q ss_pred             HHhhHHHHHHHHh
Q 007555          305 EIAGASLFGILLS  317 (598)
Q Consensus       305 ~i~GP~lgGlL~s  317 (598)
                      .++||.+++.+..
T Consensus       164 ~~~g~~~~~~~~~  176 (502)
T TIGR00887       164 ILAGAIVALIVLA  176 (502)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.85  E-value=3.1e-05  Score=83.73  Aligned_cols=332  Identities=16%  Similarity=0.180  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHHH--cccccceeeccCC-----chHHHHH-HHHHHHHHHHHHHHHHHHHhhh--ccCC-ccchHHHHH
Q 007555          184 VAVMGFFSKLILIV--GGPLVGKLMDHSP-----RIPAYIC-LNTVQAAAQLLSAAMIIHAHTV--IPTS-SSMLLHPWF  252 (598)
Q Consensus       184 ~av~~~~~~Lp~lL--~gp~aGvlvDR~~-----Rr~vmi~-~d~~q~~~v~ls~~~l~~~~~~--~~~~-~~~l~~~l~  252 (598)
                      ..+.+..-.+|+++  +-++.|...|+++     ||.=.++ -.+.+.....+.... .+.+..  ...+ ..+......
T Consensus        14 A~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a-~~~l~~~~~~~~~~~~~g~~~a   92 (403)
T PF03209_consen   14 AWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFA-LLLLAESGQQSSGPFWLGLALA   92 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHH-HHHHcccccccccccHHHHHHH
Confidence            44445555556544  6889999999999     8874443 333443322221111 121111  0001 121111111


Q ss_pred             HHHH-HHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHH
Q 007555          253 FVLV-LAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGL  331 (598)
Q Consensus       253 vv~~-llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~  331 (598)
                      ..++ +.|..-...+++.. +.-.|    ++++   ++..|+-+.+-..-.+..+++..+.|.++.-+++...+.+.-. 
T Consensus        93 ~l~F~l~G~G~~~s~T~~l-ALl~D----~~~e---~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~-  163 (403)
T PF03209_consen   93 ALAFLLYGLGVHASGTSFL-ALLAD----LAPE---ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG-  163 (403)
T ss_pred             HHHHHHHHhhHhHhHHHHH-HHHHh----cCCH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH-
Confidence            1122 34444444444443 33345    5554   3777888888888888888898888888877775443332222 


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 007555          332 IMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLN  411 (598)
Q Consensus       332 ~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~  411 (598)
                        ..+....+-...+.++.++   .++..+.       .++++         ...++-|+.++++|--+.-+.+..+...
T Consensus       164 --~a~i~~~l~~ia~wg~E~r---~~~~~~~-------~~~~~---------~~f~~a~~~~~~~~~a~~f~~fl~l~t~  222 (403)
T PF03209_consen  164 --VALIALLLNLIALWGQEPR---RSRRAAA-------AERPR---------PPFREAWRQVWASPQARRFFVFLFLGTL  222 (403)
T ss_pred             --HHHHHHHHHHHHHHhcccC---CcccccC-------CCCCC---------ccHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence              2222222221233333111   1111000       00011         1245677888888877765544443332


Q ss_pred             hhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007555          412 VVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYL-VRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLS  489 (598)
Q Consensus       412 vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l-~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~  489 (598)
                      .+..-+.++=+|.-+ .|++..+---+.+.-+.|.++|-...+++ .+|.+..|+..++......++..-+.....++  
T Consensus       223 a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~--  300 (403)
T PF03209_consen  223 AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGS--  300 (403)
T ss_pred             HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence            223455677778876 79998877777777777777777666665 44777777665554433222221111111111  


Q ss_pred             cchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhh
Q 007555          490 QQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAII  552 (598)
Q Consensus       490 ~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~  552 (598)
                          ...|-.++++.++|.-.|.+...+.+-+.++++.-|-..|.-...|..+- +.....|.+
T Consensus       301 ----~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~  360 (403)
T PF03209_consen  301 ----PWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL  360 (403)
T ss_pred             ----chHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                22344455556666778999999999999999999999999888888774 444444443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.83  E-value=4.8e-05  Score=85.16  Aligned_cols=164  Identities=10%  Similarity=-0.076  Sum_probs=103.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccC-CchHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPAYICLNTVQ  222 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~-~Rr~vmi~~d~~q  222 (598)
                      |++.+..+..-+....++......-+|+|+....+ |....+...........+..+++|.++||+ +|||+++..-+..
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            77888888889999999888888889999988777 887777776666777778888999999999 9999887766543


Q ss_pred             HHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHH
Q 007555          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (598)
Q Consensus       223 ~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~  302 (598)
                      .+.    ..++..  . ..  ..   ..+++.+.+..+...++.+... ++-.|    +.++++ .+..++-+.....-.
T Consensus        87 ~lg----~lll~~--~-~~--~~---~~~~l~l~li~iG~G~~~~~~~-alv~e----lfp~~~-~~R~sgf~i~Y~~~n  148 (493)
T PRK15462         87 AIG----HVVLGA--S-EI--HP---SFLYLSLAIIVCGYGLFKSNVS-CLLGE----LYEPTD-PRRDGGFSLMYAAGN  148 (493)
T ss_pred             HHH----HHHHHH--h-hc--ch---hHHHHHHHHHHHhcccccccHH-HHHHH----HCCCCC-ccccceehHHHHHHH
Confidence            222    111111  1 00  00   1122222222222222222111 22233    344321 145566777776667


Q ss_pred             HHHHhhHHHHHHHHhhhchhHHHH
Q 007555          303 LCEIAGASLFGILLSKYEPVTCLK  326 (598)
Q Consensus       303 ~~~i~GP~lgGlL~s~~~~~~~l~  326 (598)
                      +...+||.++|.+....|...+..
T Consensus       149 lG~~iap~l~g~L~~~~Gw~~~F~  172 (493)
T PRK15462        149 VGSIIAPIACGYAQEEYSWAMGFG  172 (493)
T ss_pred             HHHHHHHHHHHHHHhhhChHHHHH
Confidence            889999999999987767554433

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.80  E-value=1.4e-05  Score=88.41  Aligned_cols=355  Identities=12%  Similarity=0.059  Sum_probs=185.5

Q ss_pred             HHHHHHHHHHHcC-ChhH-HHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 007555          167 NFAWPSAIALLHP-SLLP-VAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSS  244 (598)
Q Consensus       167 ~fAlpL~v~~lt~-S~l~-~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~  244 (598)
                      .|+.| ++....+ |..+ .+...-+-+..+.++..++|.+.||++-|+++..+-++-.+.    .++..+..       
T Consensus        46 s~a~p-~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~----t~L~~fa~-------  113 (511)
T TIGR00806        46 SFITP-YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCV----WLLLLLGT-------  113 (511)
T ss_pred             HHHHH-HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH----HHHHHHHH-------
Confidence            34555 4444667 8888 888888889999999999999999999999888665432222    11112211       


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchhHH
Q 007555          245 SMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTC  324 (598)
Q Consensus       245 ~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~~~  324 (598)
                      +  ...+.++=+++|..+...- +....+- .|+|    +   ++..++++..+....+..++||++++.+.+ +|....
T Consensus       114 S--l~~L~i~R~llGvaEA~~~-A~~syI~-~WfP----~---kER~ratsi~~sg~~vG~~Ia~~L~qll~s-~gWr~y  181 (511)
T TIGR00806       114 S--VWHMQLMEVFYSVTMAARI-AYSSYIF-SLVP----P---SRYQRAAAYSRAAVLLGVFLSSVLGQLLVT-LGWISY  181 (511)
T ss_pred             H--HHHHHHHHHHHHHHHHHHH-HHHHHHH-HHCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchhH
Confidence            1  2456666677888887776 5555443 3665    2   378999999999999999999999999554 565443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccc-cccccccc-------cccCCCCCCCCCC-CccchhhhHHHHHHHHHHHhc
Q 007555          325 LKFAAGLIMWSLPVMIILTWFTNKISSGV-LDRAKCSQ-------SCCRTSNEGPVPD-ADNIVDVGIEAIKLGWKEYMQ  395 (598)
Q Consensus       325 l~~~~~~~~~S~~~~~l~~~li~rv~~~~-l~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~i~eG~~~~~~  395 (598)
                      .-++.+ .+.+....++..+++.+..+.. .++.++.+       +...+..+++..+ .+....+.++.+...++.-++
T Consensus       182 ~~Ln~I-sl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~  260 (511)
T TIGR00806       182 STLNII-SLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYR  260 (511)
T ss_pred             HHHHHH-HHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhc
Confidence            333311 1122221221112222110000 00111000       0000000000000 011122445566666666667


Q ss_pred             CCc-hHHHHHHHHHHHHhhhhhhHHHHHHHHh--cCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007555          396 QPV-LPASLAYVLLCLNVVLTPGSLMTAFLTQ--RGL---NPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (598)
Q Consensus       396 ~pv-ll~~l~~~lL~~~vll~f~~l~~~yl~~--lg~---s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l  469 (598)
                      +|. ++.++-.++...     ...+.+.|...  ..+   .+..=|.+.++.-+.|-++++.++.+..+.  .+.+.+.+
T Consensus       261 n~~vl~WSlWwa~a~~-----g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w--~~~~~l~l  333 (511)
T TIGR00806       261 NPQLLLWSLWWVFNSA-----GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRW--ARWSKLLI  333 (511)
T ss_pred             CcchhhhhHHHHHHhh-----HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCc--hhhHHHHH
Confidence            765 455665543211     11233334331  122   223567888888888888888888875444  33332222


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhh-hhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHH
Q 007555          470 IFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSY-DIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVML  547 (598)
Q Consensus       470 ~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~f-dl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~  547 (598)
                      ..  ..++.+..+++.+...   .+++.-.+-++.+. ...| ....+..+=+...+|.-|-|+|+-+.++.+.. ++..
T Consensus       334 ~v--~s~~~~gll~~m~~t~---~Iw~~Y~~yvlf~~-~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~  407 (511)
T TIGR00806       334 AV--VSAIQAGLVFWMSQSH---DIWVLYVTYVLFRG-IYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITA  407 (511)
T ss_pred             HH--HHHHHHHHhhhhhccc---chHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence            11  1122222233222111   12222223333332 2223 22334455566788888999999988887773 4443


Q ss_pred             Hh----hhhccCcchh
Q 007555          548 GV----AIIANDVSHF  559 (598)
Q Consensus       548 ~~----~i~~~~~~~f  559 (598)
                      ++    ++-.+...||
T Consensus       408 iVvd~~gl~l~i~~Qf  423 (511)
T TIGR00806       408 VVSDKRGLGLQVRKQF  423 (511)
T ss_pred             EEEcccccCCCceeEE
Confidence            33    2323444555

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.79  E-value=4.2e-08  Score=106.48  Aligned_cols=358  Identities=11%  Similarity=-0.011  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          150 YALYACCLAGNLVEQLWNFAWPSAIALL---HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       150 ~~L~~gq~lS~~G~~i~~fAlpL~v~~l---t~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      .+..+=-.+.++=+++-++++|-....+   ++ +...-++.+.+..+.+.+++|+.|.++||+|||++|..+..+=.++
T Consensus        32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A  111 (493)
T KOG1330|consen   32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA  111 (493)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH
Confidence            3334444566777889999998765443   45 8888899999999999999999999999999999998776543333


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~  305 (598)
                      +.++...             -..|.+.+.=.+.|+-+..+.++.+.-| .|    ..+++   +-.+.=++..-.--+..
T Consensus       112 v~~~~fs-------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~I-aD----~f~~~---~Rs~~~~ify~~ipvGs  170 (493)
T KOG1330|consen  112 VFASGFS-------------NHFWQVLLCRGFVGIGEASYSPIAPSLI-AD----SFPDD---KRSRVLGIFYFAIPVGS  170 (493)
T ss_pred             HHHHHHH-------------HHHHHHHHHHHHhccchhhhcccchhHh-hh----cCcch---hhhHHHHHhhhhccccc
Confidence            2222111             0123334444467777888888776544 45    44432   44444444443222223


Q ss_pred             HhhHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHH
Q 007555          306 IAGASLFGILLSKYE-PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIE  384 (598)
Q Consensus       306 i~GP~lgGlL~s~~~-~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (598)
                      .+|=+.|+.+-+..+ ...+.+....+.   ++..++ .+++    .++++|+..+ +..++   ..  . .+...+.|+
T Consensus       171 glG~vvgs~va~~~~~Wr~af~~~avl~---vi~~~L-~~~f----~~eP~rga~~-~~~~~---~~--~-~~~~ts~~k  235 (493)
T KOG1330|consen  171 GLGYVVGSVVASLTFWWRWAFRGSAVLG---VIVGLL-VFLF----VREPERGARD-EVDGE---NK--M-VKPFTSVWK  235 (493)
T ss_pred             ceeEEeeeeeccCccceEEEEEeehHHH---HHHHHH-HHhh----ccCccccccc-ccccC---Cc--C-CCCccchHH
Confidence            333333333333222 222333332222   211111 1111    2223321111 00000   00  0 001134555


Q ss_pred             HHHHHHHHHhcCCchH-HHHHHHHHHHHhhhh--hhH-HHHHHHHh-cC----CChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          385 AIKLGWKEYMQQPVLP-ASLAYVLLCLNVVLT--PGS-LMTAFLTQ-RG----LNPSIIGGFSGLCASMGVAATFLSAYL  455 (598)
Q Consensus       385 ~i~eG~~~~~~~pvll-~~l~~~lL~~~vll~--f~~-l~~~yl~~-lg----~s~~~iG~~~g~gavgGLlGtl~~~~l  455 (598)
                      |+    +...+.|++- .++.+....+-. .+  +.+ ....|..+ .|    .+.-.-|+.-++|.+|.+.|+.+..++
T Consensus       236 Dl----~~l~~~~v~v~~sl~~~a~~fv~-Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~  310 (493)
T KOG1330|consen  236 DL----KVLAKIKVFVLSSLGIIAAQFVI-GSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL  310 (493)
T ss_pred             HH----HHHHccCceeeehHHHHHHHHhc-cccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence            54    4455655543 244444333322 22  222 22223333 23    233334455566666667777777776


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHH---HHH--HHHhhccc--ccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccc
Q 007555          456 VRRLGILKAGAAGLIFQASLLA---MAV--AVYWSGSL--SQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKA  528 (598)
Q Consensus       456 ~rrlg~~r~g~~~l~~q~~~L~---~~v--~~~~~g~~--~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~r  528 (598)
                      .+.+.......   ..|..+..   .++  ...++...  +....+.+++.+...+- ..|.   +..-+.-+.||++.|
T Consensus       311 ~~~~~~~~~~~---~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~-~~~a---~n~~i~l~vV~p~~R  383 (493)
T KOG1330|consen  311 SRIFPNSGTLR---ASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISW-FNWA---TNNPIFLEVVPPSRR  383 (493)
T ss_pred             HHhcccccchh---HHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-cccc---cccceeeEecCcccc
Confidence            66443211111   11111110   011  11111111  00111222222332221 1232   334566778899999


Q ss_pred             hhHHHHHHHHHHHHH--HHHHHhhhhccC
Q 007555          529 NLIGTTEISVASLVE--SVMLGVAIIAND  555 (598)
Q Consensus       529 GRV~sv~~sl~~~~~--ll~~~~~i~~~~  555 (598)
                      -.+.+.+..+...+-  ..++++|++-..
T Consensus       384 t~a~a~~~~~~h~fgd~~~p~ivGilsd~  412 (493)
T KOG1330|consen  384 TTAYALDTVFEHIFGDAASPYIVGILSDK  412 (493)
T ss_pred             cHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence            999999999999882  444566655443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.75  E-value=0.00019  Score=80.05  Aligned_cols=131  Identities=15%  Similarity=0.072  Sum_probs=75.8

Q ss_pred             HHcC-ChhHHHHHHHHHHHHHHHcccccceeec----cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccC-Ccc
Q 007555          176 LLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMD----HSPRIPAYICLNTVQAAAQLLSAAMIIHAHTV----IPT-SSS  245 (598)
Q Consensus       176 ~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvD----R~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~----~~~-~~~  245 (598)
                      +..+ +...++....+..+-.++..|++|.+.|    |++|||.++..-..   ..+++..++.+....    ... +..
T Consensus        32 ~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~---~~~~~l~ll~~~~~~~~~~~~~~~~~  108 (477)
T TIGR01301        32 QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA---LVAFAVILIGFAADIGHLFGDNLDKK  108 (477)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH---HHHHHHHHHHhCchhhhhcccccccc
Confidence            4455 8899999999999999999999999999    59999987754221   111111111121000    000 000


Q ss_pred             chHHH--HHHHH-HHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007555          246 MLLHP--WFFVL-VLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGIL  315 (598)
Q Consensus       246 ~l~~~--l~vv~-~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL  315 (598)
                      ...+.  ++++. .+.......+....     |.+++-+++++ +++...+|++.+....+..++|+.+||.+
T Consensus       109 ~~~~~i~~~~i~~~lld~~~n~~~~p~-----rALiaDl~p~~-~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       109 TKPRAIIVFVVGFWILDVANNMLQGPC-----RAFLADLTGGD-ARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00011  11111 11222222222222     23344477653 22456899999999999999999999986

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.71  E-value=1.3e-06  Score=100.83  Aligned_cols=289  Identities=11%  Similarity=-0.010  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHH
Q 007555          155 CCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMI  233 (598)
Q Consensus       155 gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l  233 (598)
                      ..+.+.+.......+++-+- ..++ +....|+...+..+..++..+++|.+.||++|||++...-++-.+.    +.+.
T Consensus        41 ~~~~~~~~~g~~~~~l~~ie-k~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg----~ll~  115 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIE-RRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLG----SFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhh-hhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHH----HHHH
Confidence            45555555556666665443 3345 7777888888889999999999999999999999887665432222    1111


Q ss_pred             HHHhhh-cc---C-------C-----------------------------c--cchHHHHHHHHHHHHHHHHHHhhhhhh
Q 007555          234 IHAHTV-IP---T-------S-----------------------------S--SMLLHPWFFVLVLAGAVERLTGVALGV  271 (598)
Q Consensus       234 ~~~~~~-~~---~-------~-----------------------------~--~~l~~~l~vv~~llg~i~~l~~~a~~~  271 (598)
                      ...+.. ++   .       +                             .  ...+..+++.-++.|..+....+....
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            111100 00   0       0                             0  101112233344555444444333332


Q ss_pred             hccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhc-h---------------h-HH-HHHHHHHH-
Q 007555          272 AVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE-P---------------V-TC-LKFAAGLI-  332 (598)
Q Consensus       272 aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~-~---------------~-~~-l~~~~~~~-  332 (598)
                       .-.||+    +++   +..++.+.......+...+||+++|.+...+. .               . .+ -+..+.+. 
T Consensus       196 -~i~d~~----~~~---~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g  267 (633)
T TIGR00805       196 -YIDDFA----KSK---NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICG  267 (633)
T ss_pred             -hhhccC----Ccc---ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHH
Confidence             234543    332   67788899998888899999999999886431 0               0 00 01111111 


Q ss_pred             HHHHHHHHHHHHHHHhhcccccccc-cccc-cccCCCCCCCCCCC-ccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 007555          333 MWSLPVMIILTWFTNKISSGVLDRA-KCSQ-SCCRTSNEGPVPDA-DNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLC  409 (598)
Q Consensus       333 ~~S~~~~~l~~~li~rv~~~~l~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~  409 (598)
                      +..++..+    .+..+. +.++++ +..+ +..++......++. +.......++....++.++++|.+........+.
T Consensus       268 ~l~~l~~v----~l~~~p-~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~  342 (633)
T TIGR00805       268 GVALLTSI----PFFFFP-KALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVID  342 (633)
T ss_pred             HHHHHHHH----HHHhCc-cccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            11111111    111111 111110 0000 00000000000000 0000112345666788899999887765554444


Q ss_pred             HHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Q 007555          410 LNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCAS-MGVAATFLSAYLVRRLGI  461 (598)
Q Consensus       410 ~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gav-gGLlGtl~~~~l~rrlg~  461 (598)
                      +..+..+...++.|+. +.|+++...|++.+...+ ++++|.++.+++.+|++.
T Consensus       343 ~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~  396 (633)
T TIGR00805       343 SLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKL  396 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecc
Confidence            4333456667777887 479999999999988776 568899999999998884

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.70  E-value=0.00014  Score=78.40  Aligned_cols=271  Identities=16%  Similarity=0.120  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          157 LAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHA  236 (598)
Q Consensus       157 ~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~  236 (598)
                      ++--+.+.+.+.=+|-+.-..+=|..+.++..++....+.+.+.++|.+++|+.+|+-++..-.+-+    +-|.+ ++.
T Consensus        23 fl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~a----vg~~l-F~p   97 (422)
T COG0738          23 FLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYA----VGAAL-FWP   97 (422)
T ss_pred             HHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHH----HHHHH-Hhh
Confidence            3333445555555666555544599999999999999999999999999999999998876654322    22222 331


Q ss_pred             hhhccCCccchHHHHHHH-HHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007555          237 HTVIPTSSSMLLHPWFFV-LVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGIL  315 (598)
Q Consensus       237 ~~~~~~~~~~l~~~l~vv-~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL  315 (598)
                      ....   .   .+..+++ ++++++--.+-+++..+-     +-.+-+++   .=++--..+|.-+.+..++||.+++.+
T Consensus        98 Aa~~---~---~y~~FL~~lFila~Gi~~LetaaNp~-----v~~lg~~~---~a~~rlnl~q~fn~lGa~~gp~~g~~l  163 (422)
T COG0738          98 AASS---K---SYGFFLVALFILASGIGLLETAANPY-----VTLLGKPE---SAAFRLNLAQAFNGLGAILGPLLGSSL  163 (422)
T ss_pred             hhhh---h---hHHHHHHHHHHHHhhhHHHHhccchH-----HHHhCCch---hHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            1110   1   1233322 233333323333333332     22243321   122222356667788899999999998


Q ss_pred             Hhh-----hchhHHHHHH-HHHHHHH--HH----HHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhH
Q 007555          316 LSK-----YEPVTCLKFA-AGLIMWS--LP----VMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (598)
Q Consensus       316 ~s~-----~~~~~~l~~~-~~~~~~S--~~----~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (598)
                      +-.     .++.  ...+ -..++.+  .+    ..++..+.+.....+.++.++..            ++..+ .++  
T Consensus       164 ils~~~~~~~~~--~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~------------~~~~~-~~~--  226 (422)
T COG0738         164 ILSGVALTMSAA--QILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAA------------PSLGA-SGS--  226 (422)
T ss_pred             HHhhhhhccCHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccc------------ccccc-ccc--
Confidence            762     1111  0000 0101111  10    00000011111111111111100            00000 000  


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007555          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGIL  462 (598)
Q Consensus       384 ~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~  462 (598)
                          .+..+.+|||.++.......+|.-+=-..++.++.|+.+ .|+++.+-....+..-++-.+|-++..++.+|++..
T Consensus       227 ----~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~  302 (422)
T COG0738         227 ----AGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE  302 (422)
T ss_pred             ----chHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence                156778999999887777777743312567788889887 899998888888888888889999999999999998


Q ss_pred             HHHHH
Q 007555          463 KAGAA  467 (598)
Q Consensus       463 r~g~~  467 (598)
                      |....
T Consensus       303 k~Laf  307 (422)
T COG0738         303 KYLAF  307 (422)
T ss_pred             HHHHH
Confidence            87654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.70  E-value=6.1e-06  Score=89.16  Aligned_cols=172  Identities=16%  Similarity=0.119  Sum_probs=110.8

Q ss_pred             hhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          379 VDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVR  457 (598)
Q Consensus       379 ~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~r  457 (598)
                      ..+-++++++-+++.++|+-+..=+..-++|.-.+...-+....|.. ..|++..++.++.....+.+++|++++|+|.+
T Consensus       234 l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~  313 (438)
T COG2270         234 LRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDE  313 (438)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667888888899998886554222222221111122345666887 58999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHH
Q 007555          458 RLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEIS  537 (598)
Q Consensus       458 rlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~s  537 (598)
                      |+|..+....++.+   ....++..+....   ...+++.. ..++...|  ...-...++.=+.+|+++-||.+|..+.
T Consensus       314 rfg~k~vl~~~lvi---~~~~~~~~~~~~~---~~~f~i~g-ll~g~s~G--~~qA~SRSy~~~lvp~~k~~~fFglyal  384 (438)
T COG2270         314 RFGSKPVLMIGLVI---LSIAALYLIFLEG---ELDFWILG-LLVGTSLG--GAQASSRSYLARLVPKGKEGRFFGLYAL  384 (438)
T ss_pred             HhCCceeehHHHHH---HHHHHHHHHHccc---cHHHHHHH-HHHHHhcc--hHHHHHHHHHHHhCCCccccceeehhhh
Confidence            99987665554432   1122222222221   11222221 12212222  2345677899999999999999999998


Q ss_pred             HHHHHH-HHHHHhhhhccCcchh
Q 007555          538 VASLVE-SVMLGVAIIANDVSHF  559 (598)
Q Consensus       538 l~~~~~-ll~~~~~i~~~~~~~f  559 (598)
                      ...... +.++.++++-....+.
T Consensus       385 tgra~S~~gp~lv~v~t~iTg~~  407 (438)
T COG2270         385 TGRAASFLGPFLVAVITQITGSS  407 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcch
Confidence            888886 5556667666555553

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.50  E-value=0.00016  Score=80.42  Aligned_cols=149  Identities=17%  Similarity=0.167  Sum_probs=88.9

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHH------HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007555          389 GWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTA------FLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGIL  462 (598)
Q Consensus       389 G~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~------yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~  462 (598)
                      .++.++++|.+|..+...+..... ..+.+....      .+++.|+++..--++....++..++.+++++++.+|+|..
T Consensus       257 sl~~~~~~~~lR~~~~i~~~v~~~-qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR  335 (485)
T KOG0569|consen  257 SLRQLLKNPTLRRPLLIGIVVSFA-QQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR  335 (485)
T ss_pred             cHHHHhcCcchhHHHHHHHHHHHH-HHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            477889999888864443322211 223332211      3346799998888888888888899999999999999976


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHhhcccccchhHHHHHHH----HHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHH
Q 007555          463 KAGAAGLIFQASL-LAMAVAVYWSGSLSQQNPLLFFLCL----IVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEIS  537 (598)
Q Consensus       463 r~g~~~l~~q~~~-L~~~v~~~~~g~~~~~~~~~~~~~~----i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~s  537 (598)
                      ...+.+......+ +.+.+..+...... .+..+..++.    ++...+|   ..-.-.-+..|.+|++.|..++++..+
T Consensus       336 pLll~~~~~~~~~~~~~~~~~~l~~~~~-~~~~y~~i~~~~~~~~~f~~G---~gpi~~fi~aELf~~~~R~aa~s~~~~  411 (485)
T KOG0569|consen  336 PLLLISLSLMAVALLLMSIALFLSNSFG-SWLSYLCIAAIFLFIISFAIG---PGPIPWFIGAELFPQSARSAAQSVATA  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhhcC---CCchhHHHHHHhCCccchHHHHHHHHH
Confidence            6665544332222 22222222211110 1111111111    1111222   123445678999999999999999999


Q ss_pred             HHHHH
Q 007555          538 VASLV  542 (598)
Q Consensus       538 l~~~~  542 (598)
                      .+++.
T Consensus       412 ~~w~~  416 (485)
T KOG0569|consen  412 VNWLS  416 (485)
T ss_pred             HHHHH
Confidence            99888

>TIGR01272 gluP glucose/galactose transporter

Probab=98.40  E-value=0.00023  Score=74.84  Aligned_cols=153  Identities=11%  Similarity=0.015  Sum_probs=83.7

Q ss_pred             HhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007555          393 YMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ---RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (598)
Q Consensus       393 ~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~---lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l  469 (598)
                      .+++|.+.......++|.-.-.....-++.|+.+   .|+++.+.+...+....+..+|.++.+++.+|+|..|...++.
T Consensus       136 ~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~  215 (310)
T TIGR01272       136 AFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA  215 (310)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            3455555443333333432212455667788874   4899999999999999999999999999999999877665443


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHH-HHHHHHH
Q 007555          470 IFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASL-VESVMLG  548 (598)
Q Consensus       470 ~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~-~~ll~~~  548 (598)
                      .....    +...++...  .....+.+    .+..++....--...+..++..|++ .|+..++.. +... .-..+.+
T Consensus       216 ~l~~~----~~~l~~~~~--~~~~~~~~----~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~-~~~~Gg~i~P~l  283 (310)
T TIGR01272       216 FLAVL----LSIGAALTH--GYVAMWFV----LALGLFNSIMFPTIFSLALNALGRH-TSQGSGILC-LAIVGGAIVPLL  283 (310)
T ss_pred             HHHHH----HHHHHHHcC--CHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHH-HHHhcchHHHHH
Confidence            32211    111111111  01111111    1112222222233345566666653 566666643 3332 2356666


Q ss_pred             hhhhccCcc
Q 007555          549 VAIIANDVS  557 (598)
Q Consensus       549 ~~i~~~~~~  557 (598)
                      +|.+.+..+
T Consensus       284 ~G~lad~~g  292 (310)
T TIGR01272       284 QGSLADCLG  292 (310)
T ss_pred             HHHHHHhcc
Confidence            776665433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=1.7e-05  Score=85.01  Aligned_cols=322  Identities=13%  Similarity=0.017  Sum_probs=166.4

Q ss_pred             ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHH
Q 007555          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAG  259 (598)
Q Consensus       180 S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg  259 (598)
                      +-..+|+.-.+-.+-+++.+|+.|.+.||..+|--|+.--++-    ..+.++  +++.     ++  ++.++++=.+-|
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vm----f~sTil--Fafg-----~s--y~~l~vAR~LQg  170 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVM----FLSTIL--FAFG-----NS--YPMLFVARSLQG  170 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHH----HHHHHH--HHHc-----ch--hHHHHHHHHHhh
Confidence            3445666666777788999999999999999998877554322    233333  2211     11  244555544555


Q ss_pred             HHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchh-HHHHHHHHHHHHHHHH
Q 007555          260 AVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPV-TCLKFAAGLIMWSLPV  338 (598)
Q Consensus       260 ~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~-~~l~~~~~~~~~S~~~  338 (598)
                      .-+.+++++.. ++-.|    ..++|  .+..++-+....--+...++||++||++|.+.|-. +++... ++.+...+.
T Consensus       171 vgsA~~~tsgl-amlAd----~f~~d--~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~-~v~Lld~~L  242 (464)
T KOG3764|consen  171 VGSAFADTSGL-AMLAD----VFPED--NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLA-IVLLLDGAL  242 (464)
T ss_pred             hhHHHHHhhhH-HHHHH----Hcccc--hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHH-HHHHHHHHH
Confidence            55555555443 33344    44543  24567777777777888999999999999998843 333322 111122111


Q ss_pred             HHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchH-HHHHHHHHHHHhhhhhh
Q 007555          339 MIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLP-ASLAYVLLCLNVVLTPG  417 (598)
Q Consensus       339 ~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll-~~l~~~lL~~~vll~f~  417 (598)
                      .    +++.   +|  .  +.+++        +.++.    .        ++..+.++|... ...+....+... ...+
T Consensus       243 ~----l~vi---~p--~--~~~~~--------~~~~~----~--------~~~~Ll~dP~I~~~agai~~~n~~l-afLe  290 (464)
T KOG3764|consen  243 Q----LLVI---EP--T--EMDPD--------STEQG----T--------PMWSLLMDPYILLIAGAITFSNSSL-AFLE  290 (464)
T ss_pred             H----Hhee---Cc--c--ccCcc--------ccccC----c--------cHHHHHhCchHhhhhcchhhccchH-HHhC
Confidence            1    1111   11  1  11100        00010    0        133355666543 233333333332 2334


Q ss_pred             HHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---hhcccccchh
Q 007555          418 SLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVY---WSGSLSQQNP  493 (598)
Q Consensus       418 ~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~---~~g~~~~~~~  493 (598)
                      .....+-.+ ...+.-++|+..=-..+.-.+|+-+++.+++|++..|...   .++ .++..++...   ..++   ...
T Consensus       291 Ptlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~---~~~-gl~~~G~~~~~iP~~~~---~~~  363 (464)
T KOG3764|consen  291 PTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLL---SLG-GLATVGVSSGPIPFATS---IAQ  363 (464)
T ss_pred             cccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHH---HHH-HHHHHHHHhchhHhhhh---HHH
Confidence            444444443 4533338888887788888999999999999999777332   111 1112222211   1111   111


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccch--hHHHHHHHHHHHHHHHHHHh--hhhccCcchhHHHHH
Q 007555          494 LLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKAN--LIGTTEISVASLVESVMLGV--AIIANDVSHFGFLAT  564 (598)
Q Consensus       494 ~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rG--RV~sv~~sl~~~~~ll~~~~--~i~~~~~~~f~~l~l  564 (598)
                      +++-.   ...+++.-..|....-.+|..++..+-.  -|-|...+++...-.+++.+  ++.+...+.+++.+.
T Consensus       364 L~vp~---~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl  435 (464)
T KOG3764|consen  364 LWVPN---FGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWL  435 (464)
T ss_pred             Hhhhh---HHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHH
Confidence            22111   1222333456888888888888765432  02222233333333334443  344445555555543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.37  E-value=1.8e-05  Score=85.70  Aligned_cols=162  Identities=9%  Similarity=-0.057  Sum_probs=98.1

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007555          388 LGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAA  467 (598)
Q Consensus       388 eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~  467 (598)
                      ..++..+++|.++..+....+++..........+.+..+.+.++.+.|++.+...++.++++...+++.+|+|..+....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~   87 (417)
T PRK10489          8 LDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL   87 (417)
T ss_pred             HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence            45666778888877555544443321223334444666778899999999999999999999999999999998765543


Q ss_pred             HHHHHHHHH-HHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHH-
Q 007555          468 GLIFQASLL-AMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESV-  545 (598)
Q Consensus       468 ~l~~q~~~L-~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll-  545 (598)
                      +........ ..+...+. ...    ....+....++.+++...+..+.+.++++.+|+++|+|.++...+..++...+ 
T Consensus        88 ~~~~~~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  162 (417)
T PRK10489         88 ARGTCGLGFIGLALNAFL-PEP----SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVIS  162 (417)
T ss_pred             hHHHHHHHHHHHHHHHHc-CCC----cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhH
Confidence            322211111 11111111 111    11112222222233333445677889999999999999999988776666533 


Q ss_pred             HHHhhhhcc
Q 007555          546 MLGVAIIAN  554 (598)
Q Consensus       546 ~~~~~i~~~  554 (598)
                      +.+.+.+..
T Consensus       163 ~~l~g~l~~  171 (417)
T PRK10489        163 PALGGLLIA  171 (417)
T ss_pred             HHHHHHHHH
Confidence            344454443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.32  E-value=0.00016  Score=79.83  Aligned_cols=380  Identities=18%  Similarity=0.147  Sum_probs=187.6

Q ss_pred             HHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCC-----chHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007555          164 QLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSP-----RIPAYICLNTVQAAAQLLSAAMIIHAH  237 (598)
Q Consensus       164 ~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~-----Rr~vmi~~d~~q~~~v~ls~~~l~~~~  237 (598)
                      ++...+..-++-+-.+ |+...+.+.....+|+.+ -|+.|.+.|.++     ||.-|+.+-++..+.    +.  .+..
T Consensus         6 ~l~~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~----~~--~~~~   78 (433)
T PF03092_consen    6 GLSRLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVS----AL--VLAL   78 (433)
T ss_pred             hhHHHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHH----HH--HHHh
Confidence            3455566666777778 999999999999999954 999999999996     555555444432211    11  1111


Q ss_pred             hhccCCccchHHHHHHHHHHHHHHHHHHhhhhhh-hccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 007555          238 TVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGV-AVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILL  316 (598)
Q Consensus       238 ~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~-aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~  316 (598)
                       .+....+  .....+.+++......+++++... .+|      ...++ ++.-.+..+.......+..++|-.++|.+.
T Consensus        79 -~~~~~~s--~~~~~~~l~la~~g~a~~DV~aDa~vvE------~~~~~-p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~  148 (433)
T PF03092_consen   79 -LPASESS--AAIAVVLLFLASFGYAFADVAADALVVE------LARRE-PESRGDLQSFVWGVRSVGSLVGSLLSGPLL  148 (433)
T ss_pred             -cccccch--hhhHHHHHHHHHHHHHHHHHhhhHHHHH------HhhcC-CchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence             1110111  112222223333334455554432 222      23332 223334456666667778888888899988


Q ss_pred             hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcC
Q 007555          317 SKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQ  396 (598)
Q Consensus       317 s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~  396 (598)
                      ...++...+.+.........+..    +.+.    ++ ++.++..+.. ..  .+ ++.........+.+++-|+ .+++
T Consensus       149 ~~~~~~~~f~i~~~~~~l~~~~~----~~~~----~e-~~~~~~~~~~-~~--~~-~~~~~~~~~~~~~~~~l~~-~~~~  214 (433)
T PF03092_consen  149 DSFGPQGVFLISAALPLLMLIVA----LFLL----EE-RKVRPADEVF-SF--GK-EEVPCLFGSFREQLSELWR-ALQQ  214 (433)
T ss_pred             hcCCCeEEehHHHHHHHHHHHHH----HHhh----hh-ccccccchhh-cc--cc-cccchhhHHHHHHHHHHHH-HHhh
Confidence            87776543333221111111111    1111    11 0001000000 00  00 0000111123344455555 4444


Q ss_pred             C-chHHHHHHHHHHHHhhhhhhHHHHHHH-H-hcC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 007555          397 P-VLPASLAYVLLCLNVVLTPGSLMTAFL-T-QRG---LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (598)
Q Consensus       397 p-vll~~l~~~lL~~~vll~f~~l~~~yl-~-~lg---~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~  470 (598)
                      | ++.+.+.+..+ ++.....+.-...|. . ..+   +++..+|....++++++++|.+++.+.-++.+..+...+...
T Consensus       215 ~~i~~~~~~~~~~-~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~  293 (433)
T PF03092_consen  215 RAIWQPILFFIFF-FNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTL  293 (433)
T ss_pred             hHHHHHHHHHHHH-HHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            5 44443311111 111011111101122 2 256   999999999999999999999999998888876555443221


Q ss_pred             HHHHHHHHHHHHH-h-------hcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH
Q 007555          471 FQASLLAMAVAVY-W-------SGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV  542 (598)
Q Consensus       471 ~q~~~L~~~v~~~-~-------~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~  542 (598)
                      .   .....+... .       .|.+ +.  .+.+...++..-.+- +--++...+.=|.+|+..=|.++|+..++.++.
T Consensus       294 ~---~~~~~l~~~~lv~~~n~~~Gi~-d~--~f~lgd~~l~~~~~~-i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg  366 (433)
T PF03092_consen  294 V---SVLASLFDLLLVTRWNLDLGIP-DQ--WFALGDTILEEVIGM-IAFMPSLVLAARLCPKGSEGTVYALLASFSNLG  366 (433)
T ss_pred             H---HHHHhcccEEEEEEEeeeeCcC-Ce--EEEEEhHHHHHHHHH-HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            1   111111100 0       0111 11  000000111111111 123566777889999999999999999999998


Q ss_pred             HHHHHHhh-----hhc---cCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007555          543 ESVMLGVA-----IIA---NDVSHFGFLATLSLLSVVGAAWMFCHWLLN  583 (598)
Q Consensus       543 ~ll~~~~~-----i~~---~~~~~f~~l~l~S~~~V~~a~~l~~~~l~~  583 (598)
                      .+.+..+|     .+.   .+.++.++++++....-+. .+.+..++.+
T Consensus       367 ~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll-~l~ll~lLp~  414 (433)
T PF03092_consen  367 SSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLL-PLPLLFLLPP  414 (433)
T ss_pred             HHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHH-HHHHHHHcCC
Confidence            64443332     222   2344456666665555533 3444555544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.31  E-value=0.0026  Score=68.05  Aligned_cols=353  Identities=17%  Similarity=0.135  Sum_probs=193.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHH---HcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          150 YALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILI---VGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       150 ~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~l---L~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      ..+..+=.+-.++=|----+++-++-++.+ .-+..+..++.+++|.+   +++|++..+.-|+.-.|.+..+-++    
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Lll----   86 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLL----   86 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHH----
Confidence            455566666666666666666655555544 44456666777777764   5778889898888877766554432    


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~  305 (598)
                        +..+.++-   ..   .  ..+.+|.-.++.|+.-.+.++-...         ++++|-|.+...+.+.....-.++.
T Consensus        87 --i~~G~~iR---~~---~--~~~~L~~gt~l~G~gIav~nVLLPs---------lIK~~Fpk~~~~mtglYs~sl~~~a  147 (395)
T COG2807          87 --IAAGILIR---SL---G--GLPLLFLGTLLAGAGIAVINVLLPS---------LIKRDFPKRVGLMTGLYSTSLGAGA  147 (395)
T ss_pred             --HHHHHHHH---hc---c--cHHHHHHHHHHHHhhHHHHHHhhhH---------HHHhhcccchhhHHhHHHHHHHHHH
Confidence              11112111   10   0  0234555555555544444443333         3333223345444454444444444


Q ss_pred             HhhHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhH
Q 007555          306 IAGASLFGILLSKY-EPVTCLKFAAGLIMWSLPVMI-ILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (598)
Q Consensus       306 i~GP~lgGlL~s~~-~~~~~l~~~~~~~~~S~~~~~-l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (598)
                      -+|+.+.--+-... |...++.      .|..+... +..|+      |...|++....+      .+  .    +++  
T Consensus       148 aLaa~lavpla~~~~gW~~aL~------~WAl~allAl~~Wl------Pq~~r~~~~~~~------~~--~----~~~--  201 (395)
T COG2807         148 ALAAALAVPLAQHSGGWRGALG------FWALLALLALLIWL------PQALREQAASIA------TK--L----VSV--  201 (395)
T ss_pred             HHHhhhhhHHHHhhccHHHHHH------HHHHHHHHHHHHHh------hhcccccccccc------cc--c----ccc--
Confidence            55555555554443 2222222      22222111 11122      211111100000      00  0    000  


Q ss_pred             HHHHHHHHHHhcCCchHHHHHH----HHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007555          384 EAIKLGWKEYMQQPVLPASLAY----VLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (598)
Q Consensus       384 ~~i~eG~~~~~~~pvll~~l~~----~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrl  459 (598)
                             +-+||+|.-.....+    +.+|+.+    -+-++.++.++|+|+.+-|...+...+.++..++..|.+.+|.
T Consensus       202 -------~~vw~~~~aW~vtLfmGlqS~~~Y~~----~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~  270 (395)
T COG2807         202 -------RKVWRSPLAWQVTLFMGLQSLLYYIV----IGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS  270 (395)
T ss_pred             -------cccccCchhHHHHHHHHhhHHHHHHH----HHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   126777743333333    2233332    2456778889999999999999999999999999999999886


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH--HHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHH
Q 007555          460 GILKAGAAGLIFQASLLAMAVA--VYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEIS  537 (598)
Q Consensus       460 g~~r~g~~~l~~q~~~L~~~v~--~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~s  537 (598)
                      +-.|-......   .+...+..  .+++.+.   ...++++.|+.   . --.|-+..+-+.++..+++.-++-+|....
T Consensus       271 ~n~r~~~~~~~---~~~l~G~~G~~~~P~~~---~~lw~~llG~G---~-G~~F~laL~li~~rs~~a~~Aa~LSgmaQg  340 (395)
T COG2807         271 KNQRPLVVLAL---LLMLVGLVGLLLAPGQL---PILWALLLGLG---Q-GGAFPLALTLILLRSSDAAIAAALSGMAQG  340 (395)
T ss_pred             cccchHHHHHH---HHHHHHHHHHHHhhhhH---HHHHHHHHhCc---c-chHHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence            65444332211   11122222  2343321   12222322221   1 235777888889999999999999999999


Q ss_pred             HHHHHH-HHHHHhhhhccCcchhHHHHHHHHHHHHH
Q 007555          538 VASLVE-SVMLGVAIIANDVSHFGFLATLSLLSVVG  572 (598)
Q Consensus       538 l~~~~~-ll~~~~~i~~~~~~~f~~l~l~S~~~V~~  572 (598)
                      +.++.- .+++.+|.+.+....|....+.-+.....
T Consensus       341 ~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~  376 (395)
T COG2807         341 VGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL  376 (395)
T ss_pred             hhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence            998884 88899999988888887765544444333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.29  E-value=0.0007  Score=75.44  Aligned_cols=356  Identities=15%  Similarity=0.092  Sum_probs=191.9

Q ss_pred             hhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHH
Q 007555          181 LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGA  260 (598)
Q Consensus       181 ~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~  260 (598)
                      ..+-+..--+...-+++-.-++|.++||++-|+++..+-++..++    ..+..++...+       .+.+.++=++.|.
T Consensus        72 ~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~----t~l~P~aa~~~-------~~~~~~~R~lqGl  140 (466)
T KOG2532|consen   72 STEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALL----TLLTPLAASIG-------FYLLLVLRFLQGL  140 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHH----HHHHHHHHHhc-------chhhHHHHHHhHH
Confidence            333444444555666777778999999999999988776554333    12222221211       1334444456666


Q ss_pred             HHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh-hchhHH-HHHHHHHHHHHHHH
Q 007555          261 VERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSK-YEPVTC-LKFAAGLIMWSLPV  338 (598)
Q Consensus       261 i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~-~~~~~~-l~~~~~~~~~S~~~  338 (598)
                      .+...-++... +...|.|.       .+-.+.=+.+..-.+++.+++=+++|.|-+. +|.... ........++..  
T Consensus       141 ~~g~~~pa~~~-i~~~W~P~-------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~--  210 (466)
T KOG2532|consen  141 GQGVLFPAIGS-ILAKWAPP-------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFI--  210 (466)
T ss_pred             HHhHHHhhhhc-eeeeECCH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHH--
Confidence            66555555543 34458774       1456777777777788888888889998887 775432 222211111111  


Q ss_pred             HHHHHHHHHhhcccccccccccccc----cCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 007555          339 MIILTWFTNKISSGVLDRAKCSQSC----CRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVL  414 (598)
Q Consensus       339 ~~l~~~li~rv~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll  414 (598)
                          .|...  +.+.+++.+...++    ..+++.++  ..+   ++    .+--|+-++++|.+.+........+..+.
T Consensus       211 ----~w~~~--~~d~P~~h~~is~~El~~I~~~k~~~--~~~---~~----~~vP~~~i~ts~~vwai~~~~f~~~~~~~  275 (466)
T KOG2532|consen  211 ----LWFLF--YSDSPSKHPNISEKELKYIEKGKSEA--HVK---KK----PPVPYKAILTSPPVWAIWISAFGGNWGFY  275 (466)
T ss_pred             ----HHHHH--hcCCcccCCCCCHHHHHHHHhccccc--ccC---CC----CCCCHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence                12111  11222211110000    00000000  000   00    11246678888888876555444333223


Q ss_pred             hhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHhhc
Q 007555          415 TPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI-------LKAGAAGLIFQASLLAMAVAVYWSG  486 (598)
Q Consensus       415 ~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~-------~r~g~~~l~~q~~~L~~~v~~~~~g  486 (598)
                      .+..-++.|+++ +|++-..-|++.+.=-+...+-.++++.+..|+..       .|-..-.+    ...+.++.....+
T Consensus       276 ~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i----~~~~~ai~l~~l~  351 (466)
T KOG2532|consen  276 LLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI----AFGGPAVFLLVLA  351 (466)
T ss_pred             HHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH----HHHHHHHHHHeee
Confidence            444567779886 89999999988887777776666666666555433       11111111    1222333322221


Q ss_pred             ccc--cc-hhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhcc--CcchhH
Q 007555          487 SLS--QQ-NPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAN--DVSHFG  560 (598)
Q Consensus       487 ~~~--~~-~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~--~~~~f~  560 (598)
                      -.+  .. ..+..+...+.+++     ++......=....-+++-|-++|+.+.+..++. ..+.+.+.+.+  ..++..
T Consensus       352 ~~~~~~~~~a~~~l~~~~~~~g-----~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~  426 (466)
T KOG2532|consen  352 FTSDEHRLLAVILLTIAIGLSG-----FNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWR  426 (466)
T ss_pred             ecCCCcchHHHHHHHHHHHHcc-----cchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHH
Confidence            111  11 12222222333333     333333333333377899999999999999986 55566677775  255777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 007555          561 FLATLSLLSVVGAAWMFCHWL  581 (598)
Q Consensus       561 ~l~l~S~~~V~~a~~l~~~~l  581 (598)
                      +..++..+....+...|..+.
T Consensus       427 ~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  427 IVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHHHHHHhchheeEee
Confidence            777777777777777777664

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.26  E-value=7.4e-05  Score=77.71  Aligned_cols=132  Identities=12%  Similarity=0.070  Sum_probs=87.9

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHhhcccccchhHH
Q 007555          417 GSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASL-LAMAVAVYWSGSLSQQNPLL  495 (598)
Q Consensus       417 ~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~-L~~~v~~~~~g~~~~~~~~~  495 (598)
                      ...++.|..+.+.++.++|++.++..++.+++....+++.+|+|..+....+....... +..+.... ...    ....
T Consensus        19 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~   93 (365)
T TIGR00900        19 QVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL-LGG----LNIW   93 (365)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH-cCC----CcHH
Confidence            34555677788999999999999999999999999999999999877766543322111 11111110 010    0122


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHh-hhhc
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGV-AIIA  553 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~-~i~~  553 (598)
                      .+..+.++.+++...++....+++.+.+|+++|||++|..++...+...++..+ +.+.
T Consensus        94 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        94 QVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            222233333444556677888999999999999999999998888776444433 4443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.22  E-value=0.00013  Score=75.54  Aligned_cols=127  Identities=16%  Similarity=0.130  Sum_probs=88.0

Q ss_pred             HHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Q 007555          418 SLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLF  496 (598)
Q Consensus       418 ~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~  496 (598)
                      ..++.++. +.|.++.++|++.++..++..++....+++.+|+|..+....+.......   +....+..+    ..  .
T Consensus        17 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~---~~~~~~~~~----~~--~   87 (352)
T PF07690_consen   17 PALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG---SLLLAFASN----FW--L   87 (352)
T ss_dssp             HHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH---HHHHHHHCC----HH--H
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH---HHHhhhhhh----HH--H
Confidence            34442443 57999999999999999999999999999999999888666554433222   111112111    12  2


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHh-hhhc
Q 007555          497 FLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGV-AIIA  553 (598)
Q Consensus       497 ~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~-~i~~  553 (598)
                      +..+.++.+++...++.....++.+..|+++|+++++...+..+....++... +.+.
T Consensus        88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  145 (352)
T PF07690_consen   88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI  145 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence            33334445555556788999999999999999999999999888887555444 4444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.21  E-value=0.00012  Score=77.18  Aligned_cols=157  Identities=15%  Similarity=0.004  Sum_probs=99.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      ++++++.++...++...+.......+|.++.+..+ +....+..........+...+.+|.+.||++||+++..+.++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~  276 (375)
T TIGR00899       197 ASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGV  276 (375)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHH
Confidence            56778888887777666666777778888877777 87777776666566667778899999999999998876543211


Q ss_pred             HHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHH
Q 007555          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (598)
Q Consensus       224 ~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~  303 (598)
                      .    .  .+......     +  .+.+++..++.+.......+.....+ .|    +.++    +..++++.......+
T Consensus       277 ~----~--~~~~~~~~-----~--~~~~~~~~~~~g~~~g~~~~~~~~~~-~~----~~~~----~~~~~~~~~~~~~~~  334 (375)
T TIGR00899       277 A----F--YTGLAADN-----S--LWALLMLQLLNAIFIGILAGIGMLYF-QD----LMPG----RAGAATTLYTNTGRV  334 (375)
T ss_pred             H----H--HHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----hCcc----hhhHHHHHHHHHHHH
Confidence            1    1  11111111     1  12223333333332222222222212 22    3333    445899999999899


Q ss_pred             HHHhhHHHHHHHHhhhchhH
Q 007555          304 CEIAGASLFGILLSKYEPVT  323 (598)
Q Consensus       304 ~~i~GP~lgGlL~s~~~~~~  323 (598)
                      ...+||.++|.+.+..|...
T Consensus       335 g~~~g~~~~g~~~~~~g~~~  354 (375)
T TIGR00899       335 GWIIAGSVGGILAERWSYHA  354 (375)
T ss_pred             HHHHHHHHHHHHHHhccchh
Confidence            99999999999998777544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.17  E-value=0.00011  Score=77.50  Aligned_cols=126  Identities=17%  Similarity=0.105  Sum_probs=85.9

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHhhcccccchhHHHH
Q 007555          419 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVA-VYWSGSLSQQNPLLFF  497 (598)
Q Consensus       419 l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~-~~~~g~~~~~~~~~~~  497 (598)
                      ..+.+.++.|.++.++|++.++..++.+++.++.+++.+|+|..+....+....    ..+.. .....+      ...+
T Consensus        27 ~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~----~~~~~~~~~~~~------~~~~   96 (385)
T TIGR00710        27 AFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIF----ALSSLGLALSNN------IETL   96 (385)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH----HHHHHHHHHHcc------HHHH
Confidence            444455678999999999999999999999999999999999877665443221    11111 111111      1122


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHH-HHHHhhhhcc
Q 007555          498 LCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVES-VMLGVAIIAN  554 (598)
Q Consensus       498 ~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~l-l~~~~~i~~~  554 (598)
                      ..+.++.+++....+.....++++..|+++||++++...+....... .+.+.+.+.+
T Consensus        97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  154 (385)
T TIGR00710        97 LVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV  154 (385)
T ss_pred             HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22333444555566788889999999999999999999988877653 3344454443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.15  E-value=0.00079  Score=74.93  Aligned_cols=304  Identities=16%  Similarity=0.156  Sum_probs=152.0

Q ss_pred             HHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHH-HHHHHHHHHHHhhh
Q 007555          190 FSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFV-LVLAGAVERLTGVA  268 (598)
Q Consensus       190 ~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv-~~llg~i~~l~~~a  268 (598)
                      ...++.++-+|..|.+.|||.||..+...-+...+-    ..+..+  .      .    .|+.+ .-+.|.....++..
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~----~~~~~~--~------~----~~~~~~~~l~g~~~~~~s~~  133 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILP----ALCLLF--Q------G----YWFFLLLGLSGGFSAIFSVG  133 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHh----HHHHHH--H------H----HHHhhhcccccchhhhhhhh
Confidence            457788999999999999999999876554321111    111111  0      0    12221 11223333332222


Q ss_pred             hhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007555          269 LGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNK  348 (598)
Q Consensus       269 ~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~r  348 (598)
                      .  +...|    ++.+   +.-...=+.+...-.....+||+++|.+.-..|......++.+....+.        .+.+
T Consensus       134 ~--a~vad----is~~---~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~--------~y~~  196 (463)
T KOG2816|consen  134 F--AYVAD----ISSE---EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSL--------LYML  196 (463)
T ss_pred             h--hheee----ccch---hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHH--------HHHh
Confidence            2  22223    4443   2455555666666667889999999999988774333333222111111        1122


Q ss_pred             hcccc-cccccccccccCCCCCCCCCCCccchhhhHHHHHHHHHHHh---cCCchHHH-HHHHHHHHHhhhhhhHHHHHH
Q 007555          349 ISSGV-LDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYM---QQPVLPAS-LAYVLLCLNVVLTPGSLMTAF  423 (598)
Q Consensus       349 v~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~---~~pvll~~-l~~~lL~~~vll~f~~l~~~y  423 (598)
                      +..|+ +++++.+...+++.    .++     +....+..+-++.+.   ++|..+.. +...+++...........+.|
T Consensus       197 ~~l~Esl~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~y  267 (463)
T KOG2816|consen  197 LFLPESLQEKERSDATLREL----TPG-----SLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLY  267 (463)
T ss_pred             hccccccCcccccccccccc----CCC-----cccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEE
Confidence            21122 11111110000000    001     011122233333332   23433332 222233333311111123345


Q ss_pred             HH-hcCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Q 007555          424 LT-QRGLNPSIIGGFSGLCASMGVAATFL-SAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLI  501 (598)
Q Consensus       424 l~-~lg~s~~~iG~~~g~gavgGLlGtl~-~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i  501 (598)
                      ++ ..|.++..++.+.+..+.-+.++-++ .|.+++.+|..+....++..+..    +...+..+..    ...++..++
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~----~~~~~af~~~----~w~~~~~~v  339 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFL----QLLLFAFATE----TWMMFAAGV  339 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHH----HHHHHHHhcc----chhhhHHHH
Confidence            55 36999999998888888888776654 55888888887755555554422    1121111111    111222222


Q ss_pred             HHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHH
Q 007555          502 VLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESV  545 (598)
Q Consensus       502 ~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll  545 (598)
                      ..+-.  ........+..=..++++++|+|++....+..+...+
T Consensus       340 ~~~~~--~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~  381 (463)
T KOG2816|consen  340 VVALA--GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVV  381 (463)
T ss_pred             HHHhh--cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhh
Confidence            21111  1234566778888999999999999999888887533

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.14  E-value=0.007  Score=69.26  Aligned_cols=75  Identities=19%  Similarity=0.043  Sum_probs=53.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFA----WPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fA----lpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~  220 (598)
                      +.+.|.-.+++..+...+..+...+    ++....++.++ -..+.+..+..+...+..|+.|.+.|.++||.+.+...+
T Consensus        38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~  116 (599)
T PF06609_consen   38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSL  116 (599)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Confidence            5567777777777777776555442    34333444444 344566667788888899999999999999999987765

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.13  E-value=0.0016  Score=69.56  Aligned_cols=260  Identities=14%  Similarity=0.067  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHH
Q 007555          152 LYACCLAGNLVEQLWN-FAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS  229 (598)
Q Consensus       152 L~~gq~lS~~G~~i~~-fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls  229 (598)
                      ++.-..+..++|+++. +...+|  ..++ +.-+++.+-.+.....+++|+++|.++||++|||.-+..-+..    .++
T Consensus        39 yl~vY~La~~aDWLQGpY~Y~LY--~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily----~~s  112 (354)
T PF05631_consen   39 YLLVYLLAMAADWLQGPYLYALY--ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILY----SLS  112 (354)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHH--HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH----HHH
Confidence            5566677888888873 233344  5678 8889999999999999999999999999999999765443222    233


Q ss_pred             HHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecC-CC-chhHHHHHHHHHH-HHHHHHHH
Q 007555          230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAG-IN-RPIALAKANAVLN-RIDLLCEI  306 (598)
Q Consensus       230 ~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~-~~-~~~~L~~aNa~l~-~id~~~~i  306 (598)
                      |..    ...    +.  .+.+++-=++.|....+...    +.| +|.+.=-. ++ +++.|.+.=+.+. ..+.+..|
T Consensus       113 cl~----k~~----~~--~~~L~~GRvlgGiaTSLLfS----~FE-sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI  177 (354)
T PF05631_consen  113 CLT----KHS----SN--YPVLLLGRVLGGIATSLLFS----AFE-SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAI  177 (354)
T ss_pred             HHH----Hhc----cc--cHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHH
Confidence            422    111    11  12333333333433333222    222 25422100 00 1234544444444 33444555


Q ss_pred             hhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHH
Q 007555          307 AGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAI  386 (598)
Q Consensus       307 ~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  386 (598)
                      ++-.++-.+....+-.+...+.+     +.+...+...++.+.+.++...  +             .+    ..+..++.
T Consensus       178 ~aGv~a~~l~~~~~~g~vaPF~~-----a~~~l~~~~~~I~~~W~ENyg~--~-------------~~----~~~~~~~~  233 (354)
T PF05631_consen  178 GAGVVANVLADWFGFGPVAPFDA-----AIVLLAVAAVLILKTWPENYGD--T-------------SS----SSSLSGSF  233 (354)
T ss_pred             HHhHHHHHHHHHhCCCCcchHHH-----HHHHHHHHHHHHHhcccccCCC--c-------------cc----ccchHHHH
Confidence            55555555555433211111211     1111111112333332211100  0             00    12456788


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHH-------HHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 007555          387 KLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAF-------LTQRGLNPSIIGGFSGLCASMGVAATFLSAYLV-RR  458 (598)
Q Consensus       387 ~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~y-------l~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~-rr  458 (598)
                      +++++.++++|.+...-..-.       .|.+.|..|       +...+ .+--+|++.+..++...+|+-+++++. ++
T Consensus       234 ~~a~~~i~~d~ril~LG~~qs-------lFE~smy~FVflWtPaL~~~~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~  305 (354)
T PF05631_consen  234 REAWRAILSDPRILLLGLIQS-------LFEGSMYLFVFLWTPALDPDD-EELPLGLIFSSFMVAMMLGSSLFSRLLSKS  305 (354)
T ss_pred             HHHHHHHHcCchhHHHHHHHH-------HHHHHHHHheeeeeceecCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            899999998876543211111       123333332       22111 223489999999999999999998764 45


Q ss_pred             hhhhHH
Q 007555          459 LGILKA  464 (598)
Q Consensus       459 lg~~r~  464 (598)
                      ..+...
T Consensus       306 ~~~e~~  311 (354)
T PF05631_consen  306 LRPESL  311 (354)
T ss_pred             CCHHHH
Confidence            555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.12  E-value=0.015  Score=63.36  Aligned_cols=382  Identities=15%  Similarity=0.086  Sum_probs=195.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAI--ALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v--~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~  221 (598)
                      ++..-+.||.+-..-..+=.+|..--|+-+  .+..+ |.-+.+++...-.+...++=.+-|.+.||++-|++-+.+-++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            334456678887777777777777655544  45566 899999998888888888999999999999888876655432


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHH---
Q 007555          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLN---  298 (598)
Q Consensus       222 q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~---  298 (598)
                            ...+++.......  ..+  ++.+++..+++|..+.-|.+...- +. .|-|    ++   +--.||+...   
T Consensus        89 ------~~IP~~~~~~a~~--~~~--~~~ll~~gll~G~~GasFav~m~~-~s-~~fP----~~---~qG~AlGI~g~GN  149 (417)
T COG2223          89 ------LLIPCLGLAFAVT--YPS--TWQLLVIGLLLGLAGASFAVGMPN-AS-FFFP----KE---KQGLALGIAGAGN  149 (417)
T ss_pred             ------HHHHHHHHHHHcc--CCc--hHHHHHHHHHHhcccceehccccc-cc-ccCC----hh---hhhHHHHHhcccc
Confidence                  1223322222221  122  256777777788777766655422 22 2443    32   4445555554   


Q ss_pred             HHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccc
Q 007555          299 RIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNI  378 (598)
Q Consensus       299 ~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  378 (598)
                      .--.++++++|.+....-.. .......+    ...-.+...+..++..+   +.++. ++..                 
T Consensus       150 ~G~av~q~~~P~v~~~~g~~-~w~~~~~i----~~~~l~v~~v~~~~~~~---d~p~~-r~~~-----------------  203 (417)
T COG2223         150 LGVAVAQLVAPLVAVAFGFL-AWRNVAGI----YVVALAIAAVLAWLGMN---DVPEH-RASV-----------------  203 (417)
T ss_pred             ccHHHHHHHHHHHHHHHhhH-HHHHHHHH----HHHHHHHHHHHHHHHhC---CChhh-hccc-----------------
Confidence            33456689999887765420 01111111    11111111111122221   11111 0000                 


Q ss_pred             hhhhHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          379 VDVGIEAIKLGWKEYMQQP-VLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLV  456 (598)
Q Consensus       379 ~~~~~~~i~eG~~~~~~~p-vll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~  456 (598)
                       +....   +-++-.++++ .++-++.+...+-.+ ..+...++.|+++ -|.++..-|..-..+..-|.+.--+.+++.
T Consensus       204 -~~~~~---~~~~~v~~~~~~W~lsllY~~tFG~F-vgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~Ls  278 (417)
T COG2223         204 -KPQLP---AQLKAVFSNKDTWLLSLLYFATFGGF-VGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLS  278 (417)
T ss_pred             -cccch---hHHHHHhcCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhh
Confidence             00010   2234455554 455444444333222 2455666777774 699988888776776666666666788999


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHhh-cc--cccch-hHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHH
Q 007555          457 RRLGILKAGAAGLIFQASLLAMAVAVYWS-GS--LSQQN-PLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIG  532 (598)
Q Consensus       457 rrlg~~r~g~~~l~~q~~~L~~~v~~~~~-g~--~~~~~-~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~  532 (598)
                      .|+|-.|..++....  .++...+..+.. +.  ..+.. ....++...++..+|    |-.+-+++=..-| ++-|-|.
T Consensus       279 DR~Gg~rv~~~~f~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~G----nGsvfk~Ip~if~-~~~G~v~  351 (417)
T COG2223         279 DRIGGRRVTLAVFVG--MALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLG----NGSVFKMIPVIFP-KETGAVT  351 (417)
T ss_pred             hhccchhHHHHHHHH--HHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccC----cchheeechHHHH-hhhhHHH
Confidence            999988887654332  111111111111 00  00111 112222223333333    2222222222112 2677777


Q ss_pred             HHHHHHHHHHH-HHHHHhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007555          533 TTEISVASLVE-SVMLGVAIIANDVS-HFGFLATLSLLSVVGAAWMFCHWLLN  583 (598)
Q Consensus       533 sv~~sl~~~~~-ll~~~~~i~~~~~~-~f~~l~l~S~~~V~~a~~l~~~~l~~  583 (598)
                      |...++-.+-- .++..++....... ......+.....+.+..++...+.|+
T Consensus       352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77776655431 34444444444433 44444555555555544455444443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.09  E-value=0.00028  Score=76.52  Aligned_cols=127  Identities=15%  Similarity=0.118  Sum_probs=85.6

Q ss_pred             HHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Q 007555          418 SLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLF  496 (598)
Q Consensus       418 ~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~  496 (598)
                      +++..|+. ++|+++..+|+..+...+...+...+.+++.+|+|..+...++........   +......+    ...  
T Consensus        31 ~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~---~~~~~~~~----~~~--  101 (400)
T PRK11646         31 PLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGF---ATMAIAHE----PWL--  101 (400)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHH---HHHHHhcc----HHH--
Confidence            45555654 689999999999999999998889999999999998777665543222111   11111111    111  


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhc
Q 007555          497 FLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIA  553 (598)
Q Consensus       497 ~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~  553 (598)
                      +..+.++..++...++...++++++.+|+|+||+.+|..++..+....++ .+.+.+.
T Consensus       102 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        102 LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122223333345677788899999999999999999999888886444 4446554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.08  E-value=0.00033  Score=74.96  Aligned_cols=130  Identities=16%  Similarity=0.138  Sum_probs=83.5

Q ss_pred             hhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhH
Q 007555          415 TPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPL  494 (598)
Q Consensus       415 ~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~  494 (598)
                      .....++.|..+.|.++.++|++.++..++..++....+++.+|+|..+....+......   ......+..+      .
T Consensus        24 ~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~---~~~~~~~~~~------~   94 (381)
T PRK03633         24 VLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA---GCAGLGLMVG------F   94 (381)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcc------H
Confidence            344567778888999999999999999999999999999999999988766554332111   1111111111      1


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhc
Q 007555          495 LFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIA  553 (598)
Q Consensus       495 ~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~  553 (598)
                      ..+....++.+++...+.....+...+..|+++|||.+|...+..+....++ .+.+.+.
T Consensus        95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         95 WSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            1122222233333333344455666778899999999999888777665333 4444443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.02  E-value=0.00045  Score=74.13  Aligned_cols=126  Identities=10%  Similarity=-0.002  Sum_probs=82.7

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL  495 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~  495 (598)
                      .+...+.+.++.|+++.++|++.+...++.++|.+..+++.+|+|..+....+......   ..+......+      ..
T Consensus        34 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~---~~~~~~~~~~------~~  104 (406)
T PRK11551         34 AGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGL---FSLATAQAWD------FP  104 (406)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH---HHHHHHHhcc------HH
Confidence            33444555567899999999999999999999999999999999988776654322111   1111111111      11


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVA  550 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~~  550 (598)
                      .+....++.+++..........++++..|+++||+.++...........+...++
T Consensus       105 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  159 (406)
T PRK11551        105 SLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG  159 (406)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111222233333344566788899999999999999998887766654444443

>TIGR00895 2A0115 benzoate transport

Probab=98.01  E-value=0.00023  Score=74.96  Aligned_cols=127  Identities=11%  Similarity=0.004  Sum_probs=84.5

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q 007555          420 MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLC  499 (598)
Q Consensus       420 ~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~  499 (598)
                      ++.+.++.|+++.++|++.+...++.+++.++.+++.+|+|..+....+......+   ........+      ...+..
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~  110 (398)
T TIGR00895        40 APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVF---TLLCALATN------VTQLLI  110 (398)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHccc------hHHHHH
Confidence            33344568999999999999999999999999999999999877665543322111   111111111      111222


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHH-HHHHhhhhccC
Q 007555          500 LIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVES-VMLGVAIIAND  555 (598)
Q Consensus       500 ~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~l-l~~~~~i~~~~  555 (598)
                      ..++.+++.........+++.+..|++.||+++|...+...+... .+.+.+.+.+.
T Consensus       111 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  167 (398)
T TIGR00895       111 LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV  167 (398)
T ss_pred             HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence            333344455556778889999999999999999998887776653 34444555443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.01  E-value=0.0002  Score=75.75  Aligned_cols=121  Identities=10%  Similarity=0.038  Sum_probs=82.5

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Q 007555          417 GSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLF  496 (598)
Q Consensus       417 ~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~  496 (598)
                      .+.++.+.++.|+++.+.|.+.++..++..++.+..+++.+|+|..+...++.......   ........+    ...  
T Consensus        11 ~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~---~~~~~~~~~----~~~--   81 (377)
T PRK11102         11 LPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALA---AVACALAQT----IDQ--   81 (377)
T ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHH---HHHHHHHcc----HHH--
Confidence            34566677788999999999999999999999999999999999877665544322111   111111111    111  


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH
Q 007555          497 FLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM  546 (598)
Q Consensus       497 ~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~  546 (598)
                      +..+.++.+++...++....+++++..|+++||+.++.......+...++
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  131 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLA  131 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122233344445677888999999999999999999888777665333

>PRK12382 putative transporter; Provisional

Probab=98.00  E-value=0.00059  Score=73.01  Aligned_cols=136  Identities=7%  Similarity=-0.029  Sum_probs=82.7

Q ss_pred             hhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhH
Q 007555          416 PGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPL  494 (598)
Q Consensus       416 f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~  494 (598)
                      ..+.++.|+. +.|+++.++|++.++..++..++....+++.+|+|..|....+.................... .....
T Consensus        34 ~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  112 (392)
T PRK12382         34 PLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVS-APFKF  112 (392)
T ss_pred             HhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccc-hhHHH
Confidence            3345565665 589999999999999999999999999999999999887665433211110000000000000 00112


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHH-HHHhhhh
Q 007555          495 LFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESV-MLGVAII  552 (598)
Q Consensus       495 ~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll-~~~~~i~  552 (598)
                      ..+..+-++.++|...+.....++.++.+|+++||+.+|...+..++...+ +.+.+.+
T Consensus       113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l  171 (392)
T PRK12382        113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLL  171 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            222222233333433445566678889999999999999877665555433 3333444

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.0039  Score=70.34  Aligned_cols=359  Identities=14%  Similarity=0.067  Sum_probs=181.8

Q ss_pred             ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHH-H
Q 007555          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVL-A  258 (598)
Q Consensus       180 S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~l-l  258 (598)
                      +--..+........-..+.+|+++.+.||++.|++++.-.++.....+++    .|  ..     +  .|.+++..-+ .
T Consensus        79 s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~ls----sF--~~-----~--i~~l~lt~gvi~  145 (509)
T KOG2504|consen   79 SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLS----SF--AT-----S--LWQLYLTFGVIG  145 (509)
T ss_pred             CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHH----HH--Hh-----h--HHHHHHHHHHHh
Confidence            55557777777666778889999999999999999987766533322211    11  11     1  2344443221 2


Q ss_pred             HHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 007555          259 GAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPV  338 (598)
Q Consensus       259 g~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~  338 (598)
                      |+--.+   ..++++      ++++.=-+.+...||+....-..+..++=|.+--.++...|....++.-.+.. .+.  
T Consensus       146 G~G~~~---~~~pai------viv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~-l~~--  213 (509)
T KOG2504|consen  146 GLGLGL---IYLPAV------VILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGIS-LNV--  213 (509)
T ss_pred             hccchh---hhcchh------hhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHH-HHH--
Confidence            211111   112221      12220001267788888888788877777888888888778654443322221 111  


Q ss_pred             HHHHHHHHHhhccccccc-------c----cccccc-cCCCCCCCCCCCc---------cchhhhHH--HHHHHH----H
Q 007555          339 MIILTWFTNKISSGVLDR-------A----KCSQSC-CRTSNEGPVPDAD---------NIVDVGIE--AIKLGW----K  391 (598)
Q Consensus       339 ~~l~~~li~rv~~~~l~~-------~----~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~--~i~eG~----~  391 (598)
                       ++....++.+..+..+.       .    +..... .+...+.+.+..+         ...+.-++  ..+..+    .
T Consensus       214 -~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  292 (509)
T KOG2504|consen  214 -LVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDL  292 (509)
T ss_pred             -HHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhH
Confidence             11111222111000000       0    000000 0000000000000         00000011  111111    2


Q ss_pred             HHhcCCchHHHHHH-HHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 007555          392 EYMQQPVLPASLAY-VLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (598)
Q Consensus       392 ~~~~~pvll~~l~~-~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~  470 (598)
                      -++++|.++..... .+.++.. ..+....+.|..+.|++........++.++..+.|=++.|++..+....+.....+ 
T Consensus       293 ~ll~~~~fl~~~~~~~~~~~g~-~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~-  370 (509)
T KOG2504|consen  293 SLLKDPKFLLLALSNLFAYLGF-NVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLL-  370 (509)
T ss_pred             HHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHH-
Confidence            36777776642222 1112211 12334555677789999999999999999999999999999988776433222111 


Q ss_pred             HHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHH
Q 007555          471 FQASLLAMAVAVYW-SGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLG  548 (598)
Q Consensus       471 ~q~~~L~~~v~~~~-~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~  548 (598)
                         .++..++...+ +...  ....++......  ++....+......+.=+.++.|+..+..|+....+.++. .++.+
T Consensus       371 ---~ll~~gl~~~~~p~~~--~~~~l~~~~~~f--G~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPi  443 (509)
T KOG2504|consen  371 ---TLLIAGLARLFLPFAT--TYVGLIVFSILF--GFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPI  443 (509)
T ss_pred             ---HHHHHHHHHHHHHHhc--cHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccc
Confidence               12223333222 1111  111111111111  111223333344577788999999999999999998886 45566


Q ss_pred             hhhhccCcchhHHHHHHHHHHHHHH
Q 007555          549 VAIIANDVSHFGFLATLSLLSVVGA  573 (598)
Q Consensus       549 ~~i~~~~~~~f~~l~l~S~~~V~~a  573 (598)
                      .|.+-+..+++.......-...+.+
T Consensus       444 ag~~~d~tg~Y~~~f~~~g~~~~~s  468 (509)
T KOG2504|consen  444 AGLLYDITGNYDHAFYFCGLCFLLS  468 (509)
T ss_pred             ceeeeeccCCeeeehhhcChHHHHH
Confidence            6877777776666654444444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.0017  Score=72.95  Aligned_cols=243  Identities=15%  Similarity=0.084  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHH
Q 007555          183 PVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVE  262 (598)
Q Consensus       183 ~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~  262 (598)
                      ..+....+-.+.++++-++.|.+.||+|-.+.|..++++-.+...+.    .+.+.         .+.+.++=+++|.+|
T Consensus        82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~----~~~~s---------~~~~ialr~llGl~e  148 (495)
T KOG2533|consen   82 QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLT----AAVHS---------FPGLIALRFLLGLFE  148 (495)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHH----HHHhh---------hHHHHHHHHHHHHHh
Confidence            45666777788999999999999999997777777765422221111    11111         245566677889999


Q ss_pred             HHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHh------hhchhHHHHHHHHHHHHHH
Q 007555          263 RLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLS------KYEPVTCLKFAAGLIMWSL  336 (598)
Q Consensus       263 ~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s------~~~~~~~l~~~~~~~~~S~  336 (598)
                      ...-|+...-+ ..|-    ++   +++..--+....-.++++++|..++..++.      ..|.....++..   ++++
T Consensus       149 s~~wP~~~~~l-g~wy----~~---~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G---~i~~  217 (495)
T KOG2533|consen  149 SGGWPGVVAIL-GNWY----GK---SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEG---VITL  217 (495)
T ss_pred             cccchHHHHHH-Hhhc----Ch---hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHH---HHHH
Confidence            88877764433 2332    32   367777777777777778888777777643      223222222221   1222


Q ss_pred             HHHHHHHHHHHhhcccc----ccccccc--ccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 007555          337 PVMIILTWFTNKISSGV----LDRAKCS--QSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCL  410 (598)
Q Consensus       337 ~~~~l~~~li~rv~~~~----l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~  410 (598)
                      +..++..+.+..  .|+    +++.++.  .+..+++  ...+..    +. +  =+.+++..+++|.+.+....-+...
T Consensus       218 ~~gi~~f~~lp~--~P~~~~fl~~~ek~~~~~~~~~~--~~~~~~----~~-~--~~~~~~~a~~dp~vw~~~l~~~~~~  286 (495)
T KOG2533|consen  218 VLGIVVFFFLPD--NPSKAWFLTDEEKELVVERLRES--PSGGIE----NK-F--KWKGFKEALKDPGVWPFSLCYFFLK  286 (495)
T ss_pred             HHHheEEEEecC--ChhhccccchHHHHHHHHHHHhc--cCCCcc----cc-c--CHHHHHHHHhchhHHHHHHHHHHHh
Confidence            211110001110  111    1100000  0000000  000000    00 0  1245666778887765332222222


Q ss_pred             HhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007555          411 NVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG  460 (598)
Q Consensus       411 ~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg  460 (598)
                      .+...+....+.|+++ .|++..+-+.+.....++|++|+++++.+..|++
T Consensus       287 lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  287 LVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             hccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence            2212456677778887 6799999999999999999999999999999975

>TIGR00897 2A0118 polyol permease family

Probab=97.95  E-value=0.00093  Score=72.18  Aligned_cols=131  Identities=17%  Similarity=0.106  Sum_probs=82.3

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHH
Q 007555          419 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFL  498 (598)
Q Consensus       419 l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~  498 (598)
                      .+.+|+++.|.++.+.|...+..+++..++....+++.+|+|..|...++........... ..+.....  ....  +.
T Consensus        35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~-~~~~~~~~--~~~~--l~  109 (402)
T TIGR00897        35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAF-IVFGLGHA--NYPL--IL  109 (402)
T ss_pred             hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH-HHHhccCc--cHHH--HH
Confidence            4556777889999999999999999999999999999999999887765543221111110 00011111  1111  11


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HH-HHHhhhhcc
Q 007555          499 CLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SV-MLGVAIIAN  554 (598)
Q Consensus       499 ~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll-~~~~~i~~~  554 (598)
                      ..-.+.++|.............+.+|+++|||.+|...+..++.. .. +.+.+.+.+
T Consensus       110 ~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~  167 (402)
T TIGR00897       110 LFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP  167 (402)
T ss_pred             HHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            122223344433444556677788999999999999988877653 23 333344443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.95  E-value=0.00026  Score=78.14  Aligned_cols=156  Identities=12%  Similarity=0.028  Sum_probs=97.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccC--CchHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS--PRIPAYICLNTV  221 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~--~Rr~vmi~~d~~  221 (598)
                      ++++|+.+..+.++..++......-+|.|..+. + +....+.+..+..+..++..|++|.+.||.  ++|+.....- .
T Consensus       239 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~  316 (455)
T TIGR00892       239 THRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDK-GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSF-A  316 (455)
T ss_pred             cCchHHHHHHHHHHHHHHccchHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHH-H
Confidence            667888888888888887776666778887664 5 888888888888888889999999999984  3333322111 0


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHH
Q 007555          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (598)
Q Consensus       222 q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id  301 (598)
                       ...  .....+.... .    .+  .+.+++..++.|.......+.....+ .|    .+++   ++..++++.+....
T Consensus       317 -~~~--~~l~~ll~~~-~----~~--~~~~~i~~~~~G~~~g~~~~~~~~~~-~~----~~~~---~~~g~~~g~~~~~~  378 (455)
T TIGR00892       317 -LLF--NGLTHLLCAL-A----GD--YTGLVIYCIFFGLSFGSVGALLFEVL-MD----LVGA---QRFSSAVGLVTIVE  378 (455)
T ss_pred             -HHH--HHHHHHHHHH-h----ch--HHHHHHHHHHHHHHhchHHHHHHHHH-HH----HhhH---HHHhhHHhHHHHHH
Confidence             001  0111111111 1    11  13334444444444333333222211 22    4443   37889999999999


Q ss_pred             HHHHHhhHHHHHHHHhhhc
Q 007555          302 LLCEIAGASLFGILLSKYE  320 (598)
Q Consensus       302 ~~~~i~GP~lgGlL~s~~~  320 (598)
                      .++.++||.++|.+....+
T Consensus       379 ~lg~~igp~i~G~l~~~~g  397 (455)
T TIGR00892       379 CCAVLIGPPLAGRLVDATK  397 (455)
T ss_pred             HHHHHccccceeeeehhcC
Confidence            9999999999999987654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.93  E-value=0.00041  Score=74.30  Aligned_cols=136  Identities=12%  Similarity=-0.057  Sum_probs=85.8

Q ss_pred             HHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Q 007555          418 SLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLF  496 (598)
Q Consensus       418 ~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~  496 (598)
                      ..++.|+. +.|.++.++|++.++..++..++....+++.+|+|..|....+..................+. .......
T Consensus        36 ~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  114 (399)
T PRK05122         36 AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAW-PVLSLLL  114 (399)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhcc-chhHHHH
Confidence            45556665 579999999999999999999999999999999999887765543211110111111111110 0111222


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhcc
Q 007555          497 FLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAN  554 (598)
Q Consensus       497 ~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~  554 (598)
                      ++.+-++.++|...++....++..+.+|+++|||+++......++.. +.+.+.+.+..
T Consensus       115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122        115 LLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             HHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            22233334445555667777888899999999999998776655554 33444455544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.93  E-value=0.00084  Score=71.91  Aligned_cols=128  Identities=15%  Similarity=0.079  Sum_probs=80.7

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL  495 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~  495 (598)
                      ..++++.+..+.|+++.++|+..++..++.+++....+++.+|+|..+....+.....    ++........  +   ..
T Consensus        22 ~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~----~~~~l~~~~~--~---~~   92 (382)
T PRK10091         22 IMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCV----IGNAMFTLSS--S---YL   92 (382)
T ss_pred             HHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHH----HHHHHHHHhC--c---HH
Confidence            4456666666789999999999999999999999999999999998776654433211    1111111111  1   11


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHH-HHHhhhh
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESV-MLGVAII  552 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll-~~~~~i~  552 (598)
                      .+...-++.+++..........+.++..|+++|+++++...+...+...+ +.+.+.+
T Consensus        93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l  150 (382)
T PRK10091         93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL  150 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence            11112222333322333455677888899999999999887766665433 3333443

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.93  E-value=0.00065  Score=74.29  Aligned_cols=131  Identities=21%  Similarity=0.087  Sum_probs=83.7

Q ss_pred             hhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhH
Q 007555          415 TPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPL  494 (598)
Q Consensus       415 ~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~  494 (598)
                      .++..++.+..+.|+++.+.|++.+...++..++.+..+++.+|+|..+...++......+   .+......+      .
T Consensus        41 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~---~~~~~~~~~------~  111 (434)
T PRK11663         41 SFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGII---NILFGFSSS------L  111 (434)
T ss_pred             hHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHH---HHHHHHHhH------H
Confidence            3445566676789999999999999999999999999999999999877655443221111   111111111      1


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhcc
Q 007555          495 LFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAN  554 (598)
Q Consensus       495 ~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~  554 (598)
                      ..+....++.+++.-........++++..|+++||+++|...+...+.. +.+.+.+.+.+
T Consensus       112 ~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663        112 WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             HHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111222212235667888999999999999999988887765 34455555544

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.92  E-value=0.00019  Score=74.93  Aligned_cols=125  Identities=17%  Similarity=0.072  Sum_probs=82.6

Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Q 007555          421 TAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCL  500 (598)
Q Consensus       421 ~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~  500 (598)
                      +.+..+.|+++.++|++.++..++..++....+++.+|+|..+....+......   .........+      ...+..+
T Consensus        18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~   88 (399)
T TIGR00893        18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGV---FTGLQAFAGA------YVSLYIL   88 (399)
T ss_pred             HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHH---HHHHHHHHcC------HHHHHHH
Confidence            334446899999999999999999999999999999999987665544321111   1111111111      1112222


Q ss_pred             HHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhcc
Q 007555          501 IVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIAN  554 (598)
Q Consensus       501 i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~~  554 (598)
                      .++.+++...+......+..+..|+++||+.++...+.......+. .+.+.+..
T Consensus        89 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  143 (399)
T TIGR00893        89 RVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI  143 (399)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            2333444445677888999999999999999999998887775444 33344433

>PRK10054 putative transporter; Provisional

Probab=97.91  E-value=0.001  Score=71.94  Aligned_cols=128  Identities=13%  Similarity=0.094  Sum_probs=83.0

Q ss_pred             hhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHhhcccccchh
Q 007555          416 PGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVA-VYWSGSLSQQNP  493 (598)
Q Consensus       416 f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~-~~~~g~~~~~~~  493 (598)
                      ..+.++.|+. +.|+++.++|++.+...++++++....+++.+|+|..+...++.....    .+.. ..+..+    ..
T Consensus        26 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~----~~~~~~~~~~~----~~   97 (395)
T PRK10054         26 TLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFA----SGFIAIPLVNN----VT   97 (395)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHH----HHHHHHHHHhH----HH
Confidence            3456677876 479999999999999999999999999999999998776554433221    1111 111111    11


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHH-HHHHhhhhc
Q 007555          494 LLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVES-VMLGVAIIA  553 (598)
Q Consensus       494 ~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~l-l~~~~~i~~  553 (598)
                      .++..  ..+...+...+.....+...+.+|+++|||.+|..++..++... .+.+.+.+.
T Consensus        98 ~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         98 LVVLF--FALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111  11112223345566778888899999999999999988887753 334444443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.90  E-value=0.0012  Score=70.71  Aligned_cols=120  Identities=12%  Similarity=0.101  Sum_probs=78.2

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHhhcccccchhHHHHH
Q 007555          420 MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVA-VYWSGSLSQQNPLLFFL  498 (598)
Q Consensus       420 ~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~-~~~~g~~~~~~~~~~~~  498 (598)
                      ++.+..+.|.++.++|+..+...++.+++....+++.+|+|..+....+....    ..+.. .....+    ...  +.
T Consensus        26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~----~i~~~~~~~~~~----~~~--~~   95 (392)
T PRK10473         26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALF----IIASLLCSLAET----SSL--FL   95 (392)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHH----HHHHHHHHHhCc----HHH--HH
Confidence            33344578999999999999999999999999999999999876655433211    11111 111111    111  11


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHh
Q 007555          499 CLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGV  549 (598)
Q Consensus       499 ~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~  549 (598)
                      .+..+.+++...+......++-+..|+++|+++.+..+...+....++...
T Consensus        96 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i  146 (392)
T PRK10473         96 AGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVL  146 (392)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122223333334566677888899999999999999988877665444333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.86  E-value=0.00014  Score=75.90  Aligned_cols=122  Identities=13%  Similarity=-0.009  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL  495 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~  495 (598)
                      +...++.+..+.|+++.++|++.++..++..++.+..+++.+|+|..+....+......   ..+......+      ..
T Consensus        14 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~---~~~~~~~~~~------~~   84 (379)
T TIGR00881        14 FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAI---VNLFFGFSTS------LW   84 (379)
T ss_pred             hhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHH---HHHHHHHhhh------HH
Confidence            44444444446799999999999999999999999999999999987766554332211   1111111111      11


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM  546 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~  546 (598)
                      .++.+.++.+++..........++.+..|+++||+.++...+.......+.
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  135 (379)
T TIGR00881        85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLL  135 (379)
T ss_pred             HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHH
Confidence            222223333344445567778899999999999999999888777665333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.86  E-value=0.00069  Score=74.29  Aligned_cols=127  Identities=10%  Similarity=-0.001  Sum_probs=85.0

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHH
Q 007555          419 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFL  498 (598)
Q Consensus       419 l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~  498 (598)
                      ..+.+..+.|.++.++|++.+...++..++..+.+++.+|+|..+....+....    ..+........   .  ...+.
T Consensus        24 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~----~~~~~~~~~~~---~--~~~l~   94 (485)
T TIGR00711        24 AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF----TLGSLLCGVAP---N--LELMI   94 (485)
T ss_pred             HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH----HHHHHHHhCcC---C--HHHHH
Confidence            344455578999999999999999999999999999999999877665543321    11111111111   1  12222


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHH-HHHhhhhcc
Q 007555          499 CLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESV-MLGVAIIAN  554 (598)
Q Consensus       499 ~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll-~~~~~i~~~  554 (598)
                      .+.++.+++..........++.+..|+++||+.++...+.......+ +.+.+.+..
T Consensus        95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  151 (485)
T TIGR00711        95 IFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE  151 (485)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence            23333444544567788899999999999999999988877766533 344454443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=97.83  E-value=0.0016  Score=69.79  Aligned_cols=125  Identities=10%  Similarity=-0.019  Sum_probs=80.2

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q 007555          420 MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLC  499 (598)
Q Consensus       420 ~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~  499 (598)
                      .+.+..+.|.++.++|+..+...++..++....+++.+|+|..+....+......   ..+......+    ...  +..
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~---~~~~~~~~~~----~~~--l~~  102 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA---SHVLSALAWN----FTV--LLI  102 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---HHHHHHHhcc----HHH--HHH
Confidence            4445567899999999999999999999999999999999998776654322111   1111111111    111  111


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhc
Q 007555          500 LIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIA  553 (598)
Q Consensus       500 ~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~  553 (598)
                      +-++.+++...+.....++.-+..|+++|||++|...+.......++ .+.+.+.
T Consensus       103 ~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545        103 SRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            22222233333445667888899999999999999888777765443 4444443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.82  E-value=0.0023  Score=69.21  Aligned_cols=128  Identities=12%  Similarity=0.059  Sum_probs=83.5

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Q 007555          418 SLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFF  497 (598)
Q Consensus       418 ~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~  497 (598)
                      ++++.+..+.|+++.+.|+..++..++..++....+++.+|+|..+....+.......   .+......+    ...  +
T Consensus        41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~---~~~~~~~~~----~~~--l  111 (394)
T PRK10213         41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLS---CLLVSFANS----FSL--L  111 (394)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH---HHHHHHHCh----HHH--H
Confidence            3556666788999999999999999999999999999999999988766554432211   111111111    111  1


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHH-HHHhhhhcc
Q 007555          498 LCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESV-MLGVAIIAN  554 (598)
Q Consensus       498 ~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll-~~~~~i~~~  554 (598)
                      ...-++.+++...+......+..+.+|+++||+.++...+..+....+ +.+.+.+.+
T Consensus       112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~  169 (394)
T PRK10213        112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE  169 (394)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111122222333345567778889999999999999998877766533 344454443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.80  E-value=0.025  Score=62.83  Aligned_cols=410  Identities=12%  Similarity=0.085  Sum_probs=197.5

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------ChhHHHHHHHHHHHHHHHcccccceeeccC-CchHHH
Q 007555          143 PAHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP------SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPAY  215 (598)
Q Consensus       143 ~~r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~------S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~-~Rr~vm  215 (598)
                      ..|||.+..+..-++--.|+-.=-+--+-+|+....+      .....+++++...+.+ +...++|.++||+ .+||.+
T Consensus        17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY-~t~i~GG~laDr~LG~~~tI   95 (498)
T COG3104          17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVY-LTPIIGGWLADRVLGTRRTI   95 (498)
T ss_pred             CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHH
Confidence            3488999999888877777666666666677765544      2334555665555554 3356789999999 666655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHH
Q 007555          216 ICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANA  295 (598)
Q Consensus       216 i~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa  295 (598)
                      .+.-++      ..++-+..  ....   ......+++.++++++-.-++.+.... +--|    +-+++++ ++.+.++
T Consensus        96 ~lGail------~~iGh~~L--~~~~---~~~~~gl~i~L~~I~iG~Gl~K~NiS~-llg~----ly~~~Dp-rrD~gFt  158 (498)
T COG3104          96 VLGAIL------MAIGHLVL--AISS---VSGPGGLYIGLALIIVGTGLFKPNISS-LLGE----LYPKDDP-RRDGGFT  158 (498)
T ss_pred             HHHHHH------HHHHHHHH--hccc---cccccHHHHHHHHHHhccccccccHHH-HHHH----hcCCCCc-ccCCCcc
Confidence            433221      11111111  1110   001134566666655555555543322 2223    3344444 5888888


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCC
Q 007555          296 VLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDA  375 (598)
Q Consensus       296 ~l~~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~  375 (598)
                      ..-..+.+..+++|.+.|.+-...|-..+...+..-....++.+    ++.+|-..+...++++.+   ...+.. .+..
T Consensus       159 ~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f----~~~~r~~~~~~~~~~~~~---~~~~~~-~~~~  230 (498)
T COG3104         159 LFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF----LLGRRHVKGIGGVPDPNP---LSFNFL-LPVL  230 (498)
T ss_pred             EEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH----HHccchhcCCCCCCCccc---hhhhhh-hhhH
Confidence            88888889999999999999998885544443322222222222    223322111110010000   000000 0000


Q ss_pred             ccch-------------hhhHHHHH------HHHHH---HhcCCc----hHHH------HHHHHHHHHhhhhhhHHHHHH
Q 007555          376 DNIV-------------DVGIEAIK------LGWKE---YMQQPV----LPAS------LAYVLLCLNVVLTPGSLMTAF  423 (598)
Q Consensus       376 ~~~~-------------~~~~~~i~------eG~~~---~~~~pv----ll~~------l~~~lL~~~vll~f~~l~~~y  423 (598)
                      ....             .+.++.+.      -...|   .++++.    -++.      +..+.+|.....-.++....|
T Consensus       231 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~  310 (498)
T COG3104         231 GGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLY  310 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            0000             00000000      00100   111111    1111      222233333212222344445


Q ss_pred             HHh---cC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007555          424 LTQ---RG-L-NPSIIGGFSGLCASMGVAATFLSAYLVRRLG--------ILKAGAAGLIFQASLLAMAVAVYWSGSLSQ  490 (598)
Q Consensus       424 l~~---lg-~-s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg--------~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~  490 (598)
                      ..+   ++ + -+---+++++..++.-++.+-+..++-.+++        +.|.++.........+.+.....+.+.++.
T Consensus       311 a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~  390 (498)
T COG3104         311 ADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSG  390 (498)
T ss_pred             HHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            542   23 1 1123467788888887776655555544422        123222111111122222222233332222


Q ss_pred             chhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhh------hccCcchhHHHH
Q 007555          491 QNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAI------IANDVSHFGFLA  563 (598)
Q Consensus       491 ~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i------~~~~~~~f~~l~  563 (598)
                      ..+.+......++..+|=-+.|....++.-+..|+.+.+.++|.-..-+.... +.+.+.+.      ......+-....
T Consensus       391 ~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~  470 (498)
T COG3104         391 LVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFG  470 (498)
T ss_pred             CcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHH
Confidence            23333333344444455556688888999999999999999998775544443 22233221      223334444556


Q ss_pred             HHHHHHHHHHHHHHH
Q 007555          564 TLSLLSVVGAAWMFC  578 (598)
Q Consensus       564 l~S~~~V~~a~~l~~  578 (598)
                      .+++..+..+.+++.
T Consensus       471 ~~g~v~i~~~~~~~~  485 (498)
T COG3104         471 TIGVVAIVIGILLLL  485 (498)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            677777777777665

>PRK03699 putative transporter; Provisional

Probab=97.79  E-value=0.0024  Score=68.75  Aligned_cols=129  Identities=13%  Similarity=0.057  Sum_probs=78.5

Q ss_pred             hhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhH
Q 007555          415 TPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPL  494 (598)
Q Consensus       415 ~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~  494 (598)
                      .++.+++.+..+.|+++.++|.+.+...++..+|.+..+++.+|+|..+...++......   .........+    ...
T Consensus        25 ~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i---~~~l~~~~~~----~~~   97 (394)
T PRK03699         25 VTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL---AVAGLMFSHS----LAL   97 (394)
T ss_pred             HHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHcch----HHH
Confidence            455566666667899999999999999999999999999999999988776554322111   1111111111    111


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhh
Q 007555          495 LFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAII  552 (598)
Q Consensus       495 ~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~  552 (598)
                        +.....+.+++.-........++.+..|+++||+..+...+...... ..+...+.+
T Consensus        98 --~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699         98 --FSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             --HHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11111122222222233456677788899999999987765554432 344444443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.77  E-value=0.0016  Score=68.93  Aligned_cols=128  Identities=9%  Similarity=0.003  Sum_probs=82.6

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Q 007555          418 SLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFF  497 (598)
Q Consensus       418 ~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~  497 (598)
                      ...+.+..+.|+++.++|++.+...++..++....+++.+|+|..+...++......   .........+      ...+
T Consensus        33 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~---~~~~~~~~~~------~~~l  103 (405)
T TIGR00891        33 LVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA---GTLACGFAPG------YITM  103 (405)
T ss_pred             HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH---HHHHHHHhcc------HHHH
Confidence            344445557899999999999999999999999999999999987766544321111   1111111111      1112


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhcc
Q 007555          498 LCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAN  554 (598)
Q Consensus       498 ~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~  554 (598)
                      ..+.++.+++...++....+++-+..|+++||+.++...+...... +.+.+.+.+..
T Consensus       104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891       104 FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222333344445566777888899999999999999887766654 33444444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.76  E-value=0.0022  Score=69.84  Aligned_cols=120  Identities=12%  Similarity=0.060  Sum_probs=77.1

Q ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Q 007555          425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLS  504 (598)
Q Consensus       425 ~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~ls  504 (598)
                      .+.|+++.++|++.++..++..++.+..+++.+|+|..+....++.....   .........+    ...  +..+-++.
T Consensus        36 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~---~~~~~~~~~~----~~~--l~~~r~l~  106 (412)
T TIGR02332        36 KDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI---ASTATMFATG----PES--LYLLRILV  106 (412)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH---HHHHHHHhcC----HHH--HHHHHHHH
Confidence            46899999999999999999999999999999999998776544322111   1111111111    111  11112222


Q ss_pred             hhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHH-HHHhhhhc
Q 007555          505 RLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESV-MLGVAIIA  553 (598)
Q Consensus       505 r~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll-~~~~~i~~  553 (598)
                      +++.-.+-.....+.++..|+++||++.++..+.......+ +.+.+.+.
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332       107 GIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             HHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23333344566678999999999999999998776665433 34434443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.74  E-value=0.0025  Score=65.51  Aligned_cols=130  Identities=17%  Similarity=0.120  Sum_probs=89.1

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL  495 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~  495 (598)
                      .....+.|.++.|.++.+.|...+...++.+++....+++.+|+|..+....+......   ..+......      ...
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~---~~~~~~~~~------~~~   88 (352)
T cd06174          18 LSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL---GSLLLAFAS------SLW   88 (352)
T ss_pred             hHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH---HHHHHHHhc------cHH
Confidence            44556667778899999999999999999999999999999999987765544332211   111111111      112


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhcc
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIAN  554 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~~  554 (598)
                      .+..+..+.+++..........+..+..|+++|+++++............+ .+.+.+.+
T Consensus        89 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          89 LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233344455556678888999999999999999999988887775444 33344443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10504 putative transporter; Provisional

Probab=97.72  E-value=0.003  Score=69.43  Aligned_cols=131  Identities=12%  Similarity=-0.010  Sum_probs=84.2

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL  495 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~  495 (598)
                      +...++.|..+.|.++...|++.+...++..++....+++.+|+|..|....+......+.   +......+    ... 
T Consensus        29 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~---~~~~~~~~----~~~-  100 (471)
T PRK10504         29 VNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS---LFCALSGT----LNE-  100 (471)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---HHHHHhCC----HHH-
Confidence            4445666777899999999999999999989999999999999998777654432211111   11111111    111 


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccC
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAND  555 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~  555 (598)
                       +..+.++.++|...+-.....+.++..|+++||+..|..+...+... ..+.+.+.+...
T Consensus       101 -l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~  160 (471)
T PRK10504        101 -LLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY  160 (471)
T ss_pred             -HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence             11122233334334444567788899999999999999987776664 344444555443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.72  E-value=0.00067  Score=59.99  Aligned_cols=110  Identities=19%  Similarity=0.105  Sum_probs=70.0

Q ss_pred             HHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhh
Q 007555          192 KLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGV  271 (598)
Q Consensus       192 ~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~  271 (598)
                      .+..++.+++.|.+.||++||+.++.+.....+.    ..  .... ..    +  .+.+++..++.+.......+....
T Consensus         8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~----~~--~~~~-~~----~--~~~~~~~~~~~g~~~~~~~~~~~~   74 (141)
T TIGR00880         8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLS----TA--MFAL-SS----N--ITVLIIARFLQGFGAAFALVAGAA   74 (141)
T ss_pred             hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHH----HH--HHHH-hc----c--HHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4556788999999999999999887665432221    11  1111 11    1  123344444555544444443332


Q ss_pred             hccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchh
Q 007555          272 AVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPV  322 (598)
Q Consensus       272 aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~  322 (598)
                      .+ .|    ..++   ++..++++..+....+...+||.++|.+....+..
T Consensus        75 ~~-~~----~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  117 (141)
T TIGR00880        75 LI-AD----IYPP---EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWR  117 (141)
T ss_pred             HH-HH----HCCh---hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchH
Confidence            22 22    4443   36889999999999999999999999998876643

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.71  E-value=0.0037  Score=68.22  Aligned_cols=123  Identities=12%  Similarity=0.080  Sum_probs=86.3

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Q 007555          418 SLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFF  497 (598)
Q Consensus       418 ~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~  497 (598)
                      .+.+.+..+.|+++.+.|++.+...++.++++...+++.+|+|..+....+....    ..+...+.....  ......+
T Consensus        24 ~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~----~~g~~l~~~~~~--~~~~~~~   97 (410)
T TIGR00885        24 PMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLY----ALGAFLFWPAAE--IMNYTLF   97 (410)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH----HHHHHHHHHHHh--hccHHHH
Confidence            3444444468999999999999999999999999999999999887776654322    112111111100  0122333


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH
Q 007555          498 LCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM  546 (598)
Q Consensus       498 ~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~  546 (598)
                      +.+.++.++|.-..+...+.+.++..|+++++|..+..++.+++...++
T Consensus        98 l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g  146 (410)
T TIGR00885        98 LVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIG  146 (410)
T ss_pred             HHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            3344556667778888899999999999999999999888877775333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.71  E-value=0.002  Score=72.88  Aligned_cols=173  Identities=11%  Similarity=0.059  Sum_probs=106.9

Q ss_pred             hcCCchHHHHHHHHHHHHhhhhhhHHHHH-HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 007555          394 MQQPVLPASLAYVLLCLNVVLTPGSLMTA-FLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQ  472 (598)
Q Consensus       394 ~~~pvll~~l~~~lL~~~vll~f~~l~~~-yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q  472 (598)
                      +|||.|+......++. ++-..+..+... |..++.-|+..+|++..+..+-.++-++.+|.+..|+...|..++.-.++
T Consensus         7 lr~~~Fr~lw~a~~iS-~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~   85 (524)
T PF05977_consen    7 LRNRNFRRLWIAQLIS-NLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLR   85 (524)
T ss_pred             ccCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence            5778887644333322 211122233333 44566778999999999999999999999999999999888877654433


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHH-Hhhh
Q 007555          473 ASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVML-GVAI  551 (598)
Q Consensus       473 ~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~-~~~i  551 (598)
                      ..+........+.+..    ..+.++...++..++...++...++++.+.||+|++.+.++......++...++. +.|+
T Consensus        86 ~~~~~~L~~l~~~~~~----~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~  161 (524)
T PF05977_consen   86 ALVALLLAVLAFFGLL----SPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI  161 (524)
T ss_pred             HHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence            2211111111222321    1222222334444556678899999999999999999999999988888865554 4455


Q ss_pred             hccCcchhHHHHHHHHHHHH
Q 007555          552 IANDVSHFGFLATLSLLSVV  571 (598)
Q Consensus       552 ~~~~~~~f~~l~l~S~~~V~  571 (598)
                      +....+.-....+-++..+.
T Consensus       162 Lva~~G~~~~f~inalsfl~  181 (524)
T PF05977_consen  162 LVAFFGAAAAFLINALSFLI  181 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55444433334443443333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.67  E-value=0.0016  Score=71.29  Aligned_cols=126  Identities=13%  Similarity=0.021  Sum_probs=75.8

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q 007555          420 MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLC  499 (598)
Q Consensus       420 ~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~  499 (598)
                      ..+++.+.|+++.++|+..++..++..++....+++.+|+|..+....+........   .........  ......+..
T Consensus        49 ~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~l~~  123 (438)
T TIGR00712        49 AMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM---LLMGFVPWA--TSSIAIMFV  123 (438)
T ss_pred             hhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH---HHHhccccc--cchHHHHHH
Confidence            344666779999999999999999999999999999999998765544332211111   111110000  001111111


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhh
Q 007555          500 LIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVA  550 (598)
Q Consensus       500 ~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~  550 (598)
                      ...+.+++.-.........+.+..|+++||+.+|+.++...... +.+.+.+
T Consensus       124 ~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~  175 (438)
T TIGR00712       124 LLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL  175 (438)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence            12222222222233455666788999999999999988877664 3334433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00889 2A0110 nucleoside transporter

Probab=97.67  E-value=0.0023  Score=69.89  Aligned_cols=159  Identities=11%  Similarity=0.014  Sum_probs=98.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHHHHHHcccccceeeccCCchHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPS--------LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYI  216 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S--------~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi  216 (598)
                      |++.|..+....++..........=.|.++.+...+        .-.+++...+..+..++...++|.+.||++||++++
T Consensus       206 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~  285 (418)
T TIGR00889       206 KNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVML  285 (418)
T ss_pred             cCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            667787787777776555444444446666554323        245566667777788888899999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHH
Q 007555          217 CLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV  296 (598)
Q Consensus       217 ~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~  296 (598)
                      .+-++..+.    ..  .+... ..  .....+.+++..++.+....+..+.....+ .+    ..++   ++..++.+.
T Consensus       286 ~~~~~~~v~----~~--l~~~~-~~--~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i-~~----~~p~---~~~g~~~g~  348 (418)
T TIGR00889       286 LSLVAWALR----FG--FFAYG-DP--EYFGYALLFLSMIVYGCAFDFFNISGSVFV-EK----EVPV---HIRASAQGL  348 (418)
T ss_pred             HHHHHHHHH----HH--HHHHc-Cc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HCCH---HHHHHHHHH
Confidence            775432211    11  11111 10  010112334444555555555554443322 23    3443   378899999


Q ss_pred             HH-HHHHHHHHhhHHHHHHHHhhhc
Q 007555          297 LN-RIDLLCEIAGASLFGILLSKYE  320 (598)
Q Consensus       297 l~-~id~~~~i~GP~lgGlL~s~~~  320 (598)
                      .+ ....+..++||.++|.++...+
T Consensus       349 ~~~~~~~lg~~iGp~l~G~l~~~~g  373 (418)
T TIGR00889       349 FTLMCNGFGSLLGYILSGVMVEKMF  373 (418)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            97 5678899999999999998754

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.67  E-value=0.0021  Score=69.70  Aligned_cols=77  Identities=14%  Similarity=0.094  Sum_probs=60.5

Q ss_pred             HHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007555          392 EYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG  468 (598)
Q Consensus       392 ~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~  468 (598)
                      +++++|.+.......++++.....+.+.++.|+.+ .|+++.++|++.+..+++..++....+++.+|+|..|...++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~   82 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWI   82 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            46788877765544444443323456778888886 899999999999999999999999999999999988776543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.66  E-value=0.0042  Score=73.04  Aligned_cols=115  Identities=13%  Similarity=-0.039  Sum_probs=77.1

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q 007555          420 MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLC  499 (598)
Q Consensus       420 ~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~  499 (598)
                      ++.+..+.|+++...|++.++..+|.++|+++.+++..|+|..+..++++....+   .++......+      ...++.
T Consensus       190 lp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i---~~ll~afa~s------~~~llv  260 (742)
T TIGR01299       190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGF---FAFFSSFVQG------YGFFLF  260 (742)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH---HHHHHHHHhh------HHHHHH
Confidence            3333346899999999999999999999999999999999988776655432211   1111111111      111222


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          500 LIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       500 ~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      +-++.++|..........++-|..|++.||++.+...+...+..
T Consensus       261 ~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~  304 (742)
T TIGR01299       261 CRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGG  304 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            22333344444456778899999999999999998877665543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.64  E-value=0.0039  Score=67.15  Aligned_cols=127  Identities=20%  Similarity=0.117  Sum_probs=78.7

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHH
Q 007555          419 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFL  498 (598)
Q Consensus       419 l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~  498 (598)
                      .++.+..+.|.++.++|+..+...++..++.+..+++.+|+|..|....+......+   ........+    ...  +.
T Consensus        35 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~---~~~~~~~~~----~~~--l~  105 (406)
T PRK15402         35 GMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILT---CLAILLAQS----IEQ--FT  105 (406)
T ss_pred             chHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH---HHHHHHHcc----HHH--HH
Confidence            344455678999999999999999999999999999999999887766543221111   111111111    111  11


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHH-HHHHhhhhcc
Q 007555          499 CLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVES-VMLGVAIIAN  554 (598)
Q Consensus       499 ~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~l-l~~~~~i~~~  554 (598)
                      ..-.+.+++...........+++..|+++++|.++........... .+.+.+.+.+
T Consensus       106 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  162 (406)
T PRK15402        106 LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH  162 (406)
T ss_pred             HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122222222233455677888999999999999988776655533 3333344433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.60  E-value=0.0012  Score=69.29  Aligned_cols=156  Identities=14%  Similarity=0.129  Sum_probs=94.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHH
Q 007555          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (598)
Q Consensus       148 ~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v  226 (598)
                      .+.......++...+......-+|.|.....+ +....+.......+..++..++.|.+.||++||+.++..-.+.... 
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~-  298 (394)
T TIGR00883       220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALL-  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH-
Confidence            36666667777777777777778888877777 7777888877788888999999999999999999776443321111 


Q ss_pred             HHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHH-HHHHHHHH
Q 007555          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVL-NRIDLLCE  305 (598)
Q Consensus       227 ~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l-~~id~~~~  305 (598)
                        .... ..... ..  ..  .+..++..++.+.......+..+..+ .|    +.+++   +..++++.. .....+..
T Consensus       299 --~~~~-~~~~~-~~--~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~----~~p~~---~~~~~~~~~~~~~~~~g~  362 (394)
T TIGR00883       299 --AVPL-LMALL-DS--GS--FTLFFFLVLGLALIGGMYTGPMGSFL-PE----LFPTE---VRYTGASLAYNLAGAIFG  362 (394)
T ss_pred             --HHHH-HHHHh-cC--Cc--hHHHHHHHHHHHHHHHHHhhhHHHHH-HH----hCCcc---ceeeEeeehhHhHHHHHh
Confidence              1111 11111 11  11  12222333334443333333333222 23    45542   445666653 34455678


Q ss_pred             HhhHHHHHHHHhhhc
Q 007555          306 IAGASLFGILLSKYE  320 (598)
Q Consensus       306 i~GP~lgGlL~s~~~  320 (598)
                      .+||.++|.++...|
T Consensus       363 ~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       363 GFAPYIAAALVAMTG  377 (394)
T ss_pred             hHHHHHHHHHHHHcC
Confidence            899999999998777

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.60  E-value=0.0056  Score=66.02  Aligned_cols=129  Identities=12%  Similarity=0.080  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL  495 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~  495 (598)
                      ++..++....+.|.+..++|+..+...++..++....+++.+|+|..+....+.........  ...+. .+    ...+
T Consensus        28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~--~~~~a-~~----~~~l  100 (393)
T PRK09705         28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGAL--MRELY-PQ----SALL  100 (393)
T ss_pred             cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHH--HHHHC-cc----hHHH
Confidence            34455555567899999999999999999999999999999999998887766543211111  11111 11    1122


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhcc
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAN  554 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~  554 (598)
                        +.+-++.++|.-........++++..| ++||++++...+...... ..+.+...+.+
T Consensus       101 --l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~  157 (393)
T PRK09705        101 --LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ  157 (393)
T ss_pred             --HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              222333444444556677778888776 789999999887655543 33344444433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.59  E-value=0.0037  Score=66.98  Aligned_cols=163  Identities=13%  Similarity=0.061  Sum_probs=95.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHH-HcccccceeeccCCchHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILI-VGGPLVGKLMDHSPRIPAYICLNTVQ  222 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~l-L~gp~aGvlvDR~~Rr~vmi~~d~~q  222 (598)
                      |++.++.+....++...++....--.+.|+.+. + |...+++.......... +...++|.++||++|||+++.+-++.
T Consensus       206 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~  284 (390)
T TIGR02718       206 RRPLAWSLLALALLSAMTAVSGFGLSKLYLVDA-GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA  284 (390)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhc-CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            556677777777888777766666667788774 6 88888887766554444 44678999999999999887654432


Q ss_pred             HHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHH
Q 007555          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (598)
Q Consensus       223 ~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~  302 (598)
                      ...    ... .+..........  .+.++....+.+....+..++....+.+     .++++  ++-.+..+..+.+..
T Consensus       285 ~~~----~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~--~~~g~~~~~~~~~~~  350 (390)
T TIGR02718       285 GSL----ALL-WFAQAAFWLAPG--IAVAWSCSAFGSLITGITSVAIYTAFMR-----FAGDG--DQAGTDVTAVQSTRD  350 (390)
T ss_pred             HHH----HHH-HHHHHHcccCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCcc--cchHHHHHHHHHHHH
Confidence            211    111 111111000001  1111222222122222222222222222     12221  245677888888889


Q ss_pred             HHHHhhHHHHHHHHhhhchh
Q 007555          303 LCEIAGASLFGILLSKYEPV  322 (598)
Q Consensus       303 ~~~i~GP~lgGlL~s~~~~~  322 (598)
                      +...+||.++|.++...|..
T Consensus       351 lg~~~g~~~~G~l~~~~G~~  370 (390)
T TIGR02718       351 LGELIASSIAGYLTDRFGYA  370 (390)
T ss_pred             HHHHHHHHHHHHHHHHHccH
Confidence            99999999999999987743

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.58  E-value=0.0058  Score=65.79  Aligned_cols=154  Identities=14%  Similarity=-0.044  Sum_probs=85.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       147 r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      ++...+....++.......+..-.|.|+.+..+ +....+.+.....+..++..++.|.+.||++||+++...-+.-   
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~---  292 (393)
T PRK15011        216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAG---  292 (393)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH---
Confidence            333444344444444455566668888877667 7777777665555666777899999999999999776443211   


Q ss_pred             HHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCE  305 (598)
Q Consensus       226 v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~  305 (598)
                       ++.+.  .... ..    +  .+.+.+..++.++...+....... ...|    +.++    +..++++..+....+..
T Consensus       293 -~~~~~--~~~~-~~----~--~~~~l~~~~l~~~~~g~~~~~~~~-~~~~----~~p~----~~g~~~~~~~~~~~lg~  353 (393)
T PRK15011        293 -VCFYA--GMLM-AH----S--PAILLGLQLLNAIYIGILGGIGML-YFQD----LMPG----QAGSATTLYTNTSRVGW  353 (393)
T ss_pred             -HHHHH--HHHH-Hh----h--HHHHHHHHHHHHHHHHHHHHHHHH-HHHH----hCCC----CcchHHHHHHHHHHHHH
Confidence             11111  1111 11    1  111222222111111111111111 1123    3332    34578888888888899


Q ss_pred             HhhHHHHHHHHhhhchh
Q 007555          306 IAGASLFGILLSKYEPV  322 (598)
Q Consensus       306 i~GP~lgGlL~s~~~~~  322 (598)
                      .+||.++|.+....+..
T Consensus       354 ~~g~~l~G~i~~~~g~~  370 (393)
T PRK15011        354 IIAGSLAGIVAEIWNYH  370 (393)
T ss_pred             HHHHHHHHHHHHHhhhH
Confidence            99999999999876643

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.57  E-value=0.0063  Score=65.14  Aligned_cols=127  Identities=6%  Similarity=-0.005  Sum_probs=77.4

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHH
Q 007555          419 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFL  498 (598)
Q Consensus       419 l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~  498 (598)
                      .++.+.++.|+++.++|++.+...++.+++....+++.+|+|..+....+....    ..+........   ....  +.
T Consensus        30 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~----~~~~~~~~~~~---~~~~--l~  100 (394)
T PRK11652         30 AIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF----ILGTLVALFAH---SLTV--LI  100 (394)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH----HHHHHHHHHHc---cHHH--HH
Confidence            344556678999999999999999999999999999999999877665443221    11111111111   1111  11


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhcc
Q 007555          499 CLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIAN  554 (598)
Q Consensus       499 ~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~~  554 (598)
                      ..-++.+++..........+..+..|++++++.++..+........++ .+.+.+.+
T Consensus       101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  157 (394)
T PRK11652        101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT  157 (394)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            112222222223344555666777888999999888776666554333 33344433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.57  E-value=0.0053  Score=65.78  Aligned_cols=155  Identities=6%  Similarity=-0.063  Sum_probs=100.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      +++.++.+....++..++......-.|.|+.+...|....+.+..+..+..++...+.|.+.||+++|+++..+-++..+
T Consensus       203 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~  282 (382)
T PRK11128        203 KEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVV  282 (382)
T ss_pred             cChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            67778888777777777766566666778765333887888888888888888999999999999999998766443211


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHH-HH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID-LL  303 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id-~~  303 (598)
                      .      .+.... .    ++  .+.+++..++.+....++.+....-+.+     . +   +++..++.+.....+ ..
T Consensus       283 ~------~~~~~~-~----~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~-----~-~---~~~~~~~~~~~~~~~~~~  340 (382)
T PRK11128        283 R------WGLMGS-T----TA--LPWLIVIQILHCGTFTVCHLAAMRYIAA-----R-P---GSEVIRLQALYSALAMGG  340 (382)
T ss_pred             H------HHHHHh-h----hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----C-C---HhhhHHHHHHHHHHHHHH
Confidence            1      111111 1    11  1334444555666556555555433322     2 2   224566677665443 44


Q ss_pred             HHHhhHHHHHHHHhhhch
Q 007555          304 CEIAGASLFGILLSKYEP  321 (598)
Q Consensus       304 ~~i~GP~lgGlL~s~~~~  321 (598)
                      ...+||.++|.++..+|.
T Consensus       341 g~~ig~~i~G~l~~~~g~  358 (382)
T PRK11128        341 SIAIMTVLSGFLYQHLGA  358 (382)
T ss_pred             HHHHHHHHHHHHHHhccH
Confidence            568999999999998774

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.56  E-value=0.005  Score=67.96  Aligned_cols=126  Identities=13%  Similarity=0.009  Sum_probs=82.2

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q 007555          420 MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLC  499 (598)
Q Consensus       420 ~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~  499 (598)
                      .+.+..+.|+++.+.|.+.+...++..++.+..+++.+|+|..+....+.....   ...+......+    ..  .+..
T Consensus        43 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~---~~~~~~~~~~~----~~--~l~~  113 (496)
T PRK03893         43 LTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS---VGTLACGFAPG----YW--TLFI  113 (496)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH---HHHHHHHHHhH----HH--HHHH
Confidence            333445689999999999999999999999999999999998776654432211   11111111111    11  1122


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhcc
Q 007555          500 LIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIAN  554 (598)
Q Consensus       500 ~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~~  554 (598)
                      +.++.+++..........++++..|+++||+.++...+..++...++ .+.+.+.+
T Consensus       114 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  169 (496)
T PRK03893        114 ARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP  169 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22233334445567778899999999999999999988777665333 34454444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.52  E-value=0.21  Score=54.78  Aligned_cols=309  Identities=12%  Similarity=0.050  Sum_probs=145.8

Q ss_pred             cccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Q 007555          198 GGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDW  277 (598)
Q Consensus       198 ~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdw  277 (598)
                      +-.+++-+.|..+.|++++..-+...+    .-.++++..       +  ...+-+.-+.-|.. .-+.+++-.     |
T Consensus        57 ~l~~vflltd~l~Ykpviil~~~~~i~----t~~lll~~~-------s--v~~mq~~q~~yg~~-~a~evay~s-----Y  117 (412)
T PF01770_consen   57 FLLPVFLLTDYLRYKPVIILQALSYII----TWLLLLFGT-------S--VLAMQLMQFFYGLA-TAAEVAYYS-----Y  117 (412)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHC-------c--HHHHHHHHHHHHHH-HHHHHHHHH-----H
Confidence            344566678999999998865433211    222223321       1  12223333322221 112333322     2


Q ss_pred             eeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccc
Q 007555          278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSG-VLDR  356 (598)
Q Consensus       278 vp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~-~l~~  356 (598)
                      +=..+++   ++-+|+-+..|..-++++.+|-++|=++++..+..- .-.+.. .+.+....++..+++.+..+. ..++
T Consensus       118 iys~v~~---~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy-~~L~~i-sl~~~~~a~~~~~fLP~~~~S~~f~r  192 (412)
T PF01770_consen  118 IYSVVDK---EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSY-FQLNYI-SLASVSLALLIALFLPMPKRSLFFHR  192 (412)
T ss_pred             heeecCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHH-HHHHHHHHHHHHHHcCCCCcccceec
Confidence            2235554   489999999999999999999999999998654321 112111 111111112111233322100 0111


Q ss_pred             cccc-------c-cccCCCCC------CCCCCCccchhhhHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhhhhhhHHHH
Q 007555          357 AKCS-------Q-SCCRTSNE------GPVPDADNIVDVGIEAIKLGWKEYMQQPVL-PASLAYVLLCLNVVLTPGSLMT  421 (598)
Q Consensus       357 ~~~~-------~-~~~~~~~~------~~~~~~~~~~~~~~~~i~eG~~~~~~~pvl-l~~l~~~lL~~~vll~f~~l~~  421 (598)
                      .++.       + +..++.++      .+.+.......+.++.+...++.-+++|.+ +.++-.++...     ...+..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atc-----gy~qv~  267 (412)
T PF01770_consen  193 KPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATC-----GYYQVI  267 (412)
T ss_pred             cCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-----HHHHHH
Confidence            1100       0 00000000      000111122344556666666667777765 44554433211     111222


Q ss_pred             HHHH----h---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhH
Q 007555          422 AFLT----Q---RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPL  494 (598)
Q Consensus       422 ~yl~----~---lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~  494 (598)
                      .|..    +   .+-....-|.+.++..+.|-++++..+.+..+.....-..++..    .+..+..++..+...   .+
T Consensus       268 nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~----S~l~a~~L~lm~~t~---~I  340 (412)
T PF01770_consen  268 NYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVF----SLLQAGLLFLMSFTG---NI  340 (412)
T ss_pred             HHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHH----HHHHHHHHHHHHHhh---HH
Confidence            2322    1   23345567999999999999999999998655543221111111    111122222211110   11


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH
Q 007555          495 LFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV  542 (598)
Q Consensus       495 ~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~  542 (598)
                      ++...+-++.+..-.......+.-+-+...+|.-|-|+|+...++...
T Consensus       341 wv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~L  388 (412)
T PF01770_consen  341 WVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVL  388 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHH
Confidence            111112222221111223334456777888999999999988777666

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.52  E-value=0.0045  Score=75.71  Aligned_cols=119  Identities=8%  Similarity=0.037  Sum_probs=79.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhh
Q 007555          430 NPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHM  509 (598)
Q Consensus       430 s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~  509 (598)
                      +...+|++.++..++.++++..+|++..|+|..+...++.....+...+........+      +..++.+.++.+++..
T Consensus        45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~  118 (1146)
T PRK08633         45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGW------FWLAFAVTFLLGAQSA  118 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHHHHH
Confidence            3455789899999999999999999999999888776655433222222111111111      2222223333444555


Q ss_pred             hhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHh-hhhcc
Q 007555          510 SYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGV-AIIAN  554 (598)
Q Consensus       510 ~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~-~i~~~  554 (598)
                      .+......++.+.+|+++||+++|...+..++...++..+ +.+..
T Consensus       119 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633        119 IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677888899999999999999999999888776554444 44443

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.52  E-value=0.0058  Score=65.96  Aligned_cols=110  Identities=7%  Similarity=-0.086  Sum_probs=74.1

Q ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Q 007555          425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLS  504 (598)
Q Consensus       425 ~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~ls  504 (598)
                      .+.|.++.+.|+..++..++.++|....+++.+|+|..+...++........   .......      ....+..+-.+.
T Consensus        46 ~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~---~~~~~~~------~~~~l~~~r~l~  116 (426)
T PRK12307         46 ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGT---GLSGLAS------GVIMLTLSRFIV  116 (426)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH---HHHHHHh------HHHHHHHHHHHH
Confidence            4689999999999999999999999999999999998777665543221111   1111111      111122222233


Q ss_pred             hhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          505 RLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       505 r~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      ++|..........++.+..|+++|||.++...+...+..
T Consensus       117 G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~  155 (426)
T PRK12307        117 GMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGN  155 (426)
T ss_pred             HHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHH
Confidence            334334566778889999999999999998776655554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.51  E-value=0.0067  Score=65.55  Aligned_cols=122  Identities=11%  Similarity=-0.054  Sum_probs=85.4

Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Q 007555          421 TAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCL  500 (598)
Q Consensus       421 ~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~  500 (598)
                      +.+..+.|.++..+|++.++..++..++...++++.+|+|..|...++.......   ++......+     ..+    .
T Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~---~~~~~~~~~-----~~~----~   94 (393)
T PRK11195         27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLG---CLLMLFGIH-----PLL----A   94 (393)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHH---HHHHHHHHH-----HHH----H
Confidence            3445678889999999999999999999999999999999988877665433221   111111111     111    1


Q ss_pred             HHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHH-HHHHhhhhcc
Q 007555          501 IVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVES-VMLGVAIIAN  554 (598)
Q Consensus       501 i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~l-l~~~~~i~~~  554 (598)
                      -++.+++...+....++++-+.+|+++|+|++|...+..+.... ++.+.|++.+
T Consensus        95 r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~  149 (393)
T PRK11195         95 YGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD  149 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11223444567788899999999999999999999988887754 4444465554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.51  E-value=0.0057  Score=63.69  Aligned_cols=117  Identities=14%  Similarity=-0.040  Sum_probs=71.0

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL  495 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~  495 (598)
                      ++.+.+.+..+.|+++.++|+..++..++..++....+++.+|+|..+....+......   ..+......+      ..
T Consensus        22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~---~~~~~~~~~~------~~   92 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL---GFTFYAIADS------LA   92 (377)
T ss_pred             hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH---HHHHHHHHHH------HH
Confidence            34455555557899999999999999999999999999999999987766544322111   1111111111      11


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV  542 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~  542 (598)
                      .+..+-.+.+++............++..| ++||+..+...+.....
T Consensus        93 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g  138 (377)
T TIGR00890        93 ALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLG  138 (377)
T ss_pred             HHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchh
Confidence            11111112222222222344455666666 56999999988776554

>PRK11043 putative transporter; Provisional

Probab=97.51  E-value=0.0095  Score=63.92  Aligned_cols=123  Identities=20%  Similarity=0.164  Sum_probs=77.1

Q ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Q 007555          423 FLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIV  502 (598)
Q Consensus       423 yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~  502 (598)
                      +..+.|.++.+.|+..++..++..++.+..+++.+|+|..+....+.....   ..........+    ...  +..+..
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~---~~~~~~~~~~~----~~~--l~~~~~  102 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFA---LGSLGMLWVES----AAQ--LLVLRF  102 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHH---HHHHHHHHhcC----HHH--HHHHHH
Confidence            345689999999999999999999999999999999998877654432211   11111111111    111  111222


Q ss_pred             HHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhcc
Q 007555          503 LSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAN  554 (598)
Q Consensus       503 lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~  554 (598)
                      +.++|.........++..+..|+++++++++...+...... ..+.+.+.+.+
T Consensus       103 l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  155 (401)
T PRK11043        103 VQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN  155 (401)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22333323345566778889999999999988876665543 34444454443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.49  E-value=0.0064  Score=65.49  Aligned_cols=138  Identities=14%  Similarity=0.019  Sum_probs=83.1

Q ss_pred             hhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhH
Q 007555          415 TPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPL  494 (598)
Q Consensus       415 ~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~  494 (598)
                      .++..++.+.++.|+++.++|++.+...++..++.+..+++.+|+|..+.....+.+    ...+........     ..
T Consensus         9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~----~~~~~~~~~~~~-----~~   79 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLAT----FAAAAGRLLDPF-----NY   79 (368)
T ss_pred             HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH----HHHHHHHHHHhc-----cH
Confidence            345566667678899999999999999999999999999999999965443322111    111111111110     11


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHh-hhhccCcchhHHHHHH
Q 007555          495 LFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGV-AIIANDVSHFGFLATL  565 (598)
Q Consensus       495 ~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~-~i~~~~~~~f~~l~l~  565 (598)
                      ..++.+-++.++|...+ ........+..|+++|||..++..+-..+...++... ..+.+   +++|-...
T Consensus        80 ~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---~~gWr~~f  147 (368)
T TIGR00903        80 EWLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---AGGLQLLI  147 (368)
T ss_pred             HHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHH
Confidence            12222222223333322 3445556889999999999999887776665444433 44433   34555433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.47  E-value=0.0094  Score=64.30  Aligned_cols=77  Identities=16%  Similarity=0.044  Sum_probs=52.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHH-HHHHHHHcccccceeeccCCchHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFF-SKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~-~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~  221 (598)
                      +|+.++.+...-++-..+......-.+.++.+..+ +...++++... ..+..++.++.+|.+.||++||+.++.+-++
T Consensus       207 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~  285 (402)
T PRK11902        207 SRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVL  285 (402)
T ss_pred             hCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            67778877777677666655443222334455566 88878877543 4456778889999999999999987655443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.46  E-value=0.0095  Score=63.63  Aligned_cols=128  Identities=13%  Similarity=0.033  Sum_probs=77.0

Q ss_pred             hhHHHHHHHHhcCCChhH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-hhcccc
Q 007555          416 PGSLMTAFLTQRGLNPSI-----IGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVY-WSGSLS  489 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~-----iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~-~~g~~~  489 (598)
                      ....++.|.++.|+++.+     .|.+.++..+++.++....+++.+|+|..+....+.....    .+.... ...+  
T Consensus        33 ~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~----~~~~~~~~~~~--  106 (408)
T PRK09874         33 VMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG----IVMVLMGLAQN--  106 (408)
T ss_pred             hhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH----HHHHHHHHHhh--
Confidence            344667777788887543     5899999999999999999999999998776554332211    111111 1111  


Q ss_pred             cchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHH-HHHhhhhcc
Q 007555          490 QQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESV-MLGVAIIAN  554 (598)
Q Consensus       490 ~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll-~~~~~i~~~  554 (598)
                        ...+..  ..++.+++.. +......+..+.+|+++||+.+|...+.......+ +.+.+.+..
T Consensus       107 --~~~~~~--~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  167 (408)
T PRK09874        107 --IWQFLI--LRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD  167 (408)
T ss_pred             --HHHHHH--HHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              111111  1111112211 22345667888899999999999988776665433 344454443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.44  E-value=0.018  Score=64.32  Aligned_cols=127  Identities=13%  Similarity=-0.009  Sum_probs=77.9

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q 007555          420 MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLC  499 (598)
Q Consensus       420 ~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~  499 (598)
                      ++.+..+.|.++.+++++.++..++..++....+++.+|+|..+....+.......   .+......+    ...  ++.
T Consensus        29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~---~~~~~~a~~----~~~--li~   99 (495)
T PRK14995         29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA---SLAAAFSPT----ASW--LIA   99 (495)
T ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---HHHHHHcCC----HHH--HHH
Confidence            34455578999999999999999998888899999999999988776554322111   111111111    111  111


Q ss_pred             HHHHHhhhhhhhhhhhhh-hhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccC
Q 007555          500 LIVLSRLGHMSYDIVGAQ-ILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAND  555 (598)
Q Consensus       500 ~i~lsr~Gl~~fdl~~~~-l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~  555 (598)
                      +-++.++|.-.+...... +.+...|+++|||.+|+..+...+.. .++.+.+.+.+.
T Consensus       100 ~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995        100 TRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            212222222222233333 44666788999999999988887775 444545666554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.43  E-value=0.0084  Score=65.95  Aligned_cols=118  Identities=11%  Similarity=-0.007  Sum_probs=71.8

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q 007555          420 MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLC  499 (598)
Q Consensus       420 ~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~  499 (598)
                      ..+|+.+.|+++.++|++.+...++..++....+++.+|+|..+...++......   ............  .....+..
T Consensus        51 ~~p~l~~~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i---~~~~~~~~~~~~--~~~~~~~~  125 (452)
T PRK11273         51 AMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA---VMLFMGFVPWAT--SSIAVMFV  125 (452)
T ss_pred             hhHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH---HHHHHHhhhccc--ccHHHHHH
Confidence            3445654599999999999999999999999999999999998766554322111   111111110000  01111111


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH
Q 007555          500 LIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV  542 (598)
Q Consensus       500 ~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~  542 (598)
                      +..+.+++.............+..|+++||+..|+.++.....
T Consensus       126 ~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  168 (452)
T PRK11273        126 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  168 (452)
T ss_pred             HHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhh
Confidence            1122222222233345566778899999999999977666554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.42  E-value=0.013  Score=61.37  Aligned_cols=120  Identities=12%  Similarity=0.116  Sum_probs=75.2

Q ss_pred             hhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Q 007555          415 TPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNP  493 (598)
Q Consensus       415 ~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~  493 (598)
                      .+.++.+.++. +.|+++.+.|++.+...++..++.+..+++.+|+|..+...++......   ..........   ...
T Consensus        19 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i---~~~~~~~~~~---~~~   92 (366)
T TIGR00886        19 AFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAI---PCLWAGLAVQ---SYS   92 (366)
T ss_pred             HhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH---HHHHHHHHhh---hHH
Confidence            34455554454 6899999999999999999999999999999999988776654332211   1111111110   011


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          494 LLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       494 ~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      .  +..+-++.+++...+ ...+.++-+..|+++||+.++...+..+...
T Consensus        93 ~--~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  139 (366)
T TIGR00886        93 V--LLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGG  139 (366)
T ss_pred             H--HHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHH
Confidence            1  111111122222223 3456778888999999999999886655553

>PRK10133 L-fucose transporter; Provisional

Probab=97.40  E-value=0.023  Score=62.62  Aligned_cols=125  Identities=13%  Similarity=0.025  Sum_probs=81.0

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHH
Q 007555          419 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFL  498 (598)
Q Consensus       419 l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~  498 (598)
                      +++.+-.+.|+++.+.|+..+...++..++....+++.+|+|..+...+++........+... ....+     ....++
T Consensus        48 ~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~-~~~a~-----~~~~ll  121 (438)
T PRK10133         48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP-AAEIM-----NYTLFL  121 (438)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-HHhcC-----CHHHHH
Confidence            344443468999999999999999999999999999999999988877655432221111100 01111     122333


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHh
Q 007555          499 CLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGV  549 (598)
Q Consensus       499 ~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~  549 (598)
                      .+.++.++|.-..++..+.++.+..|++++++..+...+.......++.+.
T Consensus       122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~  172 (438)
T PRK10133        122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF  172 (438)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445556667788888888877677777667777666665554444333

>TIGR00901 2A0125 AmpG-related permease

Probab=97.39  E-value=0.01  Score=62.51  Aligned_cols=132  Identities=16%  Similarity=0.041  Sum_probs=74.3

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHH-HHhhcccc
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL-----GILKAGAAGLIFQASLLAMAVA-VYWSGSLS  489 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrl-----g~~r~g~~~l~~q~~~L~~~v~-~~~~g~~~  489 (598)
                      .....+.+.++.|++.+++|+.... ++...+ .++.+++..|+     |..|..+.  ..+......... .+....  
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~--~~~~~~~~~~~~l~~~~~~--   80 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLV--LTQVLLLSLLLILSFLVPS--   80 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHH--HHHHHHHHHHHHHHcCCcc--
Confidence            3346677788899999999999655 333333 66777787776     54443221  112111111111 111110  


Q ss_pred             cchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHH-HHHHhhhhccC
Q 007555          490 QQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVES-VMLGVAIIAND  555 (598)
Q Consensus       490 ~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~l-l~~~~~i~~~~  555 (598)
                      ... ..++...+. ..++....|++..+++-|.+|+++||+++|...+-.....+ .+.+.+.+.+.
T Consensus        81 ~~l-~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~  145 (356)
T TIGR00901        81 TDL-PLLAGLAFL-IAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP  145 (356)
T ss_pred             hhH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            111 111111111 12334466899999999999999999999998876666654 33444444333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.36  E-value=0.0077  Score=64.74  Aligned_cols=116  Identities=13%  Similarity=0.059  Sum_probs=76.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhh
Q 007555          429 LNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGH  508 (598)
Q Consensus       429 ~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl  508 (598)
                      .+..++|++.++..++..++....+++.+|+|..+....+......   ...........   .....++.+-.+.++|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~r~l~G~~~  141 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVI---GAILMGLAAFA---LSVEMLIVGRVLLGIGV  141 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHH---HHHHHHHhccc---cchHHHHHHHHHHHhhh
Confidence            4489999999999999999999999999999987766544332111   11111111111   11112222333344444


Q ss_pred             hhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 007555          509 MSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVA  550 (598)
Q Consensus       509 ~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~~  550 (598)
                      -.+......++.+..|+++||+.++..++.......++..++
T Consensus       142 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       142 GIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             hHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            456677788999999999999999998877766655555544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.36  E-value=0.0025  Score=56.23  Aligned_cols=107  Identities=15%  Similarity=0.044  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 007555          439 GLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQI  518 (598)
Q Consensus       439 g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l  518 (598)
                      ...+++.+++....+++.+|+|..+....+......   .........+      ...+.....+..++....+.....+
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~   75 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVL---STAMFALSSN------ITVLIIARFLQGFGAAFALVAGAAL   75 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHH---HHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            345677888899999999999887765543322111   1111111111      1111112222333334456677888


Q ss_pred             hhccCCCccchhHHHHHHHHHHHHHH-HHHHhhhhcc
Q 007555          519 LQTGIPSSKANLIGTTEISVASLVES-VMLGVAIIAN  554 (598)
Q Consensus       519 ~Q~~VP~~~rGRV~sv~~sl~~~~~l-l~~~~~i~~~  554 (598)
                      .++..|+++||++++..++....... .+.+.+.+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  112 (141)
T TIGR00880        76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ  112 (141)
T ss_pred             HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence            99999999999999999988888753 4444455543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.34  E-value=0.0035  Score=69.22  Aligned_cols=123  Identities=12%  Similarity=0.004  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHhhcccccchhH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQ-ASLLAMAVAVYWSGSLSQQNPL  494 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q-~~~L~~~v~~~~~g~~~~~~~~  494 (598)
                      ++..++.+..+.|+++.++|++.++..++..++....+++.+|+|..+....++... ..++..+..  ..+.. .  ..
T Consensus        48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~-~--~~  122 (467)
T PRK09556         48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGAS--LGSGS-V--SL  122 (467)
T ss_pred             hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHH--Hhccc-c--hH
Confidence            444455555678999999999999999999999999999999999887765443221 111122211  11100 0  11


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          495 LFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       495 ~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      ..+...-++.+++..........++-+..|+++||+.+|+..+..+...
T Consensus       123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~  171 (467)
T PRK09556        123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGG  171 (467)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhh
Confidence            1122222222233223335666789999999999999998877555553

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.32  E-value=0.019  Score=61.61  Aligned_cols=154  Identities=10%  Similarity=-0.071  Sum_probs=101.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      |+|+++.+....++-..+...+.--.|.|+.+ .+ |....+..-....+..++..+..|.+.||+++|++++.+-+...
T Consensus       203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~  281 (382)
T TIGR00902       203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACV  281 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHH
Confidence            77889888888888888877777777888876 56 98888988888899999999999999999999998875543321


Q ss_pred             HHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHH-HHHH
Q 007555          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLN-RIDL  302 (598)
Q Consensus       224 ~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~-~id~  302 (598)
                      +.      .+.+.. .    ++  .+.+++..++-++...++.++...-+. +    . ++   ++..++=+... ....
T Consensus       282 ~~------~~~~~~-~----~~--~~~~~~~q~l~g~~~~~~~~~~~~~i~-~----~-~~---~~~~~~q~~~~~~~~g  339 (382)
T TIGR00902       282 GR------WAIIGA-I----EA--FPLIFLLQILHCGTFAVCHLAAMRYIA-A----Q-PG---SEIAKLQALYNALAMG  339 (382)
T ss_pred             HH------HHHHHh-H----hh--HHHHHHHHHHHHHHHHHHHHHHHHHHH-h----C-CH---hhHHHHHHHHHHHHHH
Confidence            11      111111 1    11  234455555566555555555433222 1    2 22   13333333333 2345


Q ss_pred             HHHHhhHHHHHHHHhhhch
Q 007555          303 LCEIAGASLFGILLSKYEP  321 (598)
Q Consensus       303 ~~~i~GP~lgGlL~s~~~~  321 (598)
                      +...+||.++|.++...|.
T Consensus       340 ~g~~~g~~~~G~l~~~~g~  358 (382)
T TIGR00902       340 GLIAIFTAFAGFIYPTLGA  358 (382)
T ss_pred             HHHHHHHHHHHHHHHhccH
Confidence            7788999999999998875

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.29  E-value=0.015  Score=64.89  Aligned_cols=130  Identities=12%  Similarity=0.011  Sum_probs=79.8

Q ss_pred             hhHHHHHHHHh---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007555          416 PGSLMTAFLTQ---RGLNPSIIGGFSGLCASMGVAATFLSAYLVRR-LGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQ  491 (598)
Q Consensus       416 f~~l~~~yl~~---lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rr-lg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~  491 (598)
                      ..+.++.|+.+   +|+++.+.|.+.+..++++.++.+..+++..| +|..|+..++.....    .+...+....   .
T Consensus        29 ~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~----~g~~~~~~~~---~  101 (475)
T TIGR00924        29 MQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM----LGHFMLAMSI---Y  101 (475)
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH----HHHHHHHhcc---c
Confidence            44567778874   79999999999999999999999999999988 899888776543221    1111111111   1


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCc---cchhHHHHHHHHHHHHHH-HHHHhhhhcc
Q 007555          492 NPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSS---KANLIGTTEISVASLVES-VMLGVAIIAN  554 (598)
Q Consensus       492 ~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~---~rGRV~sv~~sl~~~~~l-l~~~~~i~~~  554 (598)
                      ...  +..+..+.++|.-.+..+...+.=+..|++   .|++.++...+..+.... .+.+.+.+.+
T Consensus       102 ~~~--~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~  166 (475)
T TIGR00924       102 PDL--IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE  166 (475)
T ss_pred             HhH--HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence            111  111222233343344444455544445544   488899988877777653 4444465544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00896 CynX cyanate transporter

Probab=97.27  E-value=0.013  Score=61.81  Aligned_cols=117  Identities=18%  Similarity=0.230  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL  495 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~  495 (598)
                      ++..++.+..+.|+++.++|+..+...++..++.+..+++.+|+|..+...++....    ..+.......+    ... 
T Consensus        19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~----~~~~~~~~~~~----~~~-   89 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLI----AAGILIRSAPG----TAL-   89 (355)
T ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHH----HHHHHHHHhcc----HHH-
Confidence            445666677789999999999999999999999999999999999888766554321    11111111111    111 


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                       +....++..+|....+.....+..+..| ++||+.++...+.+....
T Consensus        90 -l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~  135 (355)
T TIGR00896        90 -LFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGA  135 (355)
T ss_pred             -HHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHH
Confidence             1112222223333334445555666665 589999999887776654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.26  E-value=0.0028  Score=68.52  Aligned_cols=159  Identities=15%  Similarity=0.057  Sum_probs=98.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAA  224 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~  224 (598)
                      ++|.|+.+....++..++...+..-.+.|.....++....+.+.....++.++..++.|.++||++||+++..+-++..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       220 KNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVL  299 (437)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            67888888888888888877765555555544445555666676777888999999999999999999988766443221


Q ss_pred             HHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCC----chhHHHHHHHHHHHH
Q 007555          225 AQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGIN----RPIALAKANAVLNRI  300 (598)
Q Consensus       225 ~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~----~~~~L~~aNa~l~~i  300 (598)
                          .... .+ . ..   ..  .+.+++..++.+.......+.... +-.|    +++.+    .+++-..+++..+..
T Consensus       300 ----~~~~-~~-~-~~---~~--~~~~~~~~~~~g~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~G~~~~~~~~~  362 (437)
T TIGR00792       300 ----GYLI-FF-F-AG---SN--LPLILVLIILAGFGQNFVTGLVWA-LVAD----TVDYGEWKTGVRAEGLVYSVRTFV  362 (437)
T ss_pred             ----HHHH-HH-H-cc---hh--HHHHHHHHHHHHHHHHHHHHHHHH-HHhh----hhhhhhhhcCccchHHHHHHHHHH
Confidence                1111 11 1 11   01  122233333333333322222222 2223    33211    012456788999999


Q ss_pred             HHHHHHhhHHHHHHHHhhhc
Q 007555          301 DLLCEIAGASLFGILLSKYE  320 (598)
Q Consensus       301 d~~~~i~GP~lgGlL~s~~~  320 (598)
                      +.++..+||.++|.+++..|
T Consensus       363 ~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       363 RKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999987655

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.26  E-value=0.026  Score=62.80  Aligned_cols=114  Identities=12%  Similarity=0.038  Sum_probs=69.7

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHH
Q 007555          419 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFL  498 (598)
Q Consensus       419 l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~  498 (598)
                      .++.+..+.|++..++|.+.+...++.++|.++.+++.+|+|..+....+......  . .+...+..+    ...+...
T Consensus        58 ~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~--~-~~~~~~~~s----~~~l~~~  130 (476)
T PLN00028         58 LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP--A-VFCMSLVSS----ATGFIAV  130 (476)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH--H-HHHHHHhcC----HHHHHHH
Confidence            33444456899999999999999999999999999999999987765543322111  1 111111111    1111111


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH
Q 007555          499 CLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV  542 (598)
Q Consensus       499 ~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~  542 (598)
                        -++.+++...+ .+...++-+..|+++||+++|+.++..+..
T Consensus       131 --r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g  171 (476)
T PLN00028        131 --RFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLG  171 (476)
T ss_pred             --HHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHH
Confidence              11112222222 234456778899999999999988765544

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.17  E-value=0.038  Score=61.68  Aligned_cols=160  Identities=14%  Similarity=0.115  Sum_probs=99.4

Q ss_pred             HHHHHHHH-hcCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHhhcccccchhH
Q 007555          418 SLMTAFLT-QRGLNPSI-IGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI-FQASLLAMAVAVYWSGSLSQQNPL  494 (598)
Q Consensus       418 ~l~~~yl~-~lg~s~~~-iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~-~q~~~L~~~v~~~~~g~~~~~~~~  494 (598)
                      ++..+|+. +.|+++.+ +|.+.++...+=.+.-+..+++..|+|..+...++.. +....+..+.+    .      ++
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa----~------Sl  115 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG----T------SV  115 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----H------HH
Confidence            35555665 68999999 9999999999999999999999999998876655432 22222222211    1      11


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhh-hccCcchhHHHHHHHHHHHHH
Q 007555          495 LFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAI-IANDVSHFGFLATLSLLSVVG  572 (598)
Q Consensus       495 ~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i-~~~~~~~f~~l~l~S~~~V~~  572 (598)
                      ..+...-++.+++-- .......++-..+|+++|||++|..++-..+...++ .+.+. ..-.-..+..+-.+|.+.+..
T Consensus       116 ~~L~i~R~llGvaEA-~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~  194 (511)
T TIGR00806       116 WHMQLMEVFYSVTMA-ARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTF  194 (511)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            111111111111111 123788899999999999999999988877764333 22222 222344566667788888877


Q ss_pred             HHHHHHHHhcCCcccCCccc
Q 007555          573 AAWMFCHWLLNPTDEQRSLF  592 (598)
Q Consensus       573 a~~l~~~~l~~~~~~~~~l~  592 (598)
                      +...-+ .+.++   +|++|
T Consensus       195 a~~~a~-~LP~~---~~sl~  210 (511)
T TIGR00806       195 SVFLAL-FLKRP---KRSLF  210 (511)
T ss_pred             HHHHHH-hCCCC---chhhh
Confidence            644433 22344   55554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.16  E-value=0.0046  Score=67.45  Aligned_cols=78  Identities=18%  Similarity=0.130  Sum_probs=70.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q  222 (598)
                      +||.|+.++..+++..++..+..-..+.|.....++.-..+.+.....++.++..|+.+.++||++|||++..+-++.
T Consensus       223 ~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~  300 (428)
T PF13347_consen  223 RNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLA  300 (428)
T ss_pred             ccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHH
Confidence            789999999999999999999998899999888885577788888999999999999999999999999998776543

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.16  E-value=0.027  Score=63.02  Aligned_cols=164  Identities=13%  Similarity=0.047  Sum_probs=88.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHH-HHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMG-FFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       146 ~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~-~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      ++.++.+....++-.+++.....-.+-|+.+..+ |...++.+. ....+..++.++.+|.++||++|||.++..-+++.
T Consensus       221 ~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~  300 (491)
T PRK11010        221 RNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQG  300 (491)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4445555555566666766655445556655667 988888886 56667889999999999999999887665443333


Q ss_pred             HHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHH
Q 007555          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (598)
Q Consensus       224 ~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~  303 (598)
                      +.    ... .+......  .+  .+.+++..++......+...+. .+.-.+    +++++   .-.+.=+..+....+
T Consensus       301 l~----~l~-~~~l~~~~--~~--~~~l~~~~~l~~~~~g~~~~~~-~a~~~~----l~~~~---~~~t~~gl~~s~~~l  363 (491)
T PRK11010        301 VS----NAG-YWLLSITD--KN--LYSMGAAVFFENLCGGMGTAAF-VALLMT----LCNKS---FSATQFALLSALSAV  363 (491)
T ss_pred             HH----HHH-HHHHHhcc--cc--HHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HcCCC---CcHHHHHHHHHHHHH
Confidence            22    111 11111110  11  1122222222111111122222 112122    33332   112333455555677


Q ss_pred             HHHhhHHHHHHHHhhhchhHHHH
Q 007555          304 CEIAGASLFGILLSKYEPVTCLK  326 (598)
Q Consensus       304 ~~i~GP~lgGlL~s~~~~~~~l~  326 (598)
                      ..+++|.++|.++...|......
T Consensus       364 g~~~~~~~~G~l~~~~G~~~~f~  386 (491)
T PRK11010        364 GRVYVGPVAGWFVEAHGWPTFYL  386 (491)
T ss_pred             HHHHHHHHHHHHHHHhChHHHHH
Confidence            77777778999988777544333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.11  E-value=0.038  Score=61.70  Aligned_cols=118  Identities=14%  Similarity=0.012  Sum_probs=75.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhh
Q 007555          428 GLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLG  507 (598)
Q Consensus       428 g~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~G  507 (598)
                      ..++...|.+.+...+|.++|.+..+++.+|+|..+...++.....+.   ..................+..+-++.+++
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  128 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIA---TVASGLSPGSSPKSVMATLCFWRFWLGVG  128 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH---HHHHHHccCcccchHHHHHHHHHHHHHHH
Confidence            455667899999999999999999999999999877765543322111   11111111100001122333333344445


Q ss_pred             hhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHH
Q 007555          508 HMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLG  548 (598)
Q Consensus       508 l~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~  548 (598)
                      .-........+.+|..|+++||+..++......+...++..
T Consensus       129 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~  169 (502)
T TIGR00887       129 IGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI  169 (502)
T ss_pred             HhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55556778899999999999999999988776665444433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.11  E-value=0.036  Score=60.39  Aligned_cols=120  Identities=16%  Similarity=0.088  Sum_probs=75.3

Q ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Q 007555          425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLS  504 (598)
Q Consensus       425 ~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~ls  504 (598)
                      .+.|.+....+...++..++..+|.+..+++.+|+|..+...++......   ..+......+    ...  ++.+-++.
T Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~---~~~~~~~a~~----~~~--l~~~r~l~  114 (413)
T PRK15403         44 RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL---ACAATLFTTS----MTQ--FLIARFIQ  114 (413)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH---HHHHHHHcCC----HHH--HHHHHHHH
Confidence            45799999999999999999999999999999999988876654332111   1111111111    111  11111122


Q ss_pred             hhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHh-hhhc
Q 007555          505 RLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGV-AIIA  553 (598)
Q Consensus       505 r~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~-~i~~  553 (598)
                      +++..........+.++..|+++++|..+...+.......++..+ +.+.
T Consensus       115 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~  164 (413)
T PRK15403        115 GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM  164 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222212233445678889999999999999888877776444444 4443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.08  E-value=0.0091  Score=65.66  Aligned_cols=121  Identities=10%  Similarity=0.060  Sum_probs=77.8

Q ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Q 007555          426 QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSR  505 (598)
Q Consensus       426 ~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr  505 (598)
                      +.++++.+.|.+.++..++.+++.+..+++.+|+|..+....+......   ......+....    ....+...-++.+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~---~~~~~~~~~~~----~~~~l~~~r~~~G  142 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSV---ISIVIPWAAGG----GIALVVFCRVIQG  142 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHH---HHHHHHHHHHc----CchHHHHHHHHHH
Confidence            4688999999999999999999999999999999987766544322111   11111010000    0111111222233


Q ss_pred             hhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHH-HHHHhhhhc
Q 007555          506 LGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVES-VMLGVAIIA  553 (598)
Q Consensus       506 ~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~l-l~~~~~i~~  553 (598)
                      ++..........++.+..|+++||+++|...+...+... .+.+.+.+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~  191 (465)
T TIGR00894       143 LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC  191 (465)
T ss_pred             HhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455667788999999999999999999887666643 344445443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.04  E-value=0.037  Score=60.67  Aligned_cols=122  Identities=10%  Similarity=0.001  Sum_probs=75.7

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHhhcc--cccchhHHHHHHHHHH
Q 007555          427 RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLL-AMAVAVYWSGS--LSQQNPLLFFLCLIVL  503 (598)
Q Consensus       427 lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L-~~~v~~~~~g~--~~~~~~~~~~~~~i~l  503 (598)
                      .+.++.+.|++.+...+|..+|+++.+++.+|+|..+....+........ ..+...+....  .........++.+=++
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l  129 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII  129 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence            48889999999999999999999999999999999887765543221111 11111000000  0011111222222223


Q ss_pred             HhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHH
Q 007555          504 SRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLG  548 (598)
Q Consensus       504 sr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~  548 (598)
                      .+++.-........++.|..|+++||+..+...........+..+
T Consensus       130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~  174 (479)
T PRK10077        130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYF  174 (479)
T ss_pred             HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence            334444556677889999999999999999877654444433333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.03  E-value=0.057  Score=60.52  Aligned_cols=170  Identities=13%  Similarity=0.010  Sum_probs=112.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCch--HHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRI--PAYICLNTV  221 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr--~vmi~~d~~  221 (598)
                      +.|+..++.++.++-.=|-....--..+|.....+ |.....++.++..+..++.+...|.+.||++-|  ++++.+.++
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLIL  358 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            56778888899888776666666666778888888 999999999999999999999999999999877  666655443


Q ss_pred             HHHHHHHHHHHH-HHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHH
Q 007555          222 QAAAQLLSAAMI-IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI  300 (598)
Q Consensus       222 q~~~v~ls~~~l-~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~i  300 (598)
                      -.+. . ..+++ ++....+. .+   .+..+++.++.|....-.+...+.     +.-.+.|++   +-.+.-+.-...
T Consensus       359 ~~~i-~-~~g~~G~~~~~~g~-~~---~~~f~~~a~~~G~~~G~~qs~sRs-----~~~~LiP~g---~e~efFgly~i~  424 (477)
T PF11700_consen  359 WIII-P-LYGLFGFWPSFFGL-KS---PWEFWVLAVLIGLFMGGIQSASRS-----LFSRLIPPG---REAEFFGLYAIT  424 (477)
T ss_pred             HHHH-H-HHHHHHhhhcccCc-cc---HHHHHHHHHHHHHHhhhHHHHHHH-----HHHHhCCCc---hhhHHHHHHHHH
Confidence            2111 0 00110 00001111 01   133444444444443333333332     233366764   568999999999


Q ss_pred             HHHHHHhhHHHHHHHHhhhc-hhHHHHHH
Q 007555          301 DLLCEIAGASLFGILLSKYE-PVTCLKFA  328 (598)
Q Consensus       301 d~~~~i~GP~lgGlL~s~~~-~~~~l~~~  328 (598)
                      +..+.++||.+.|++....| ...++...
T Consensus       425 gk~ss~lGPll~g~i~~~tg~~r~g~~~l  453 (477)
T PF11700_consen  425 GKASSWLGPLLFGLITDATGSQRYGFLFL  453 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            99999999999999999877 33444443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.01  E-value=0.041  Score=67.69  Aligned_cols=118  Identities=8%  Similarity=-0.014  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhh
Q 007555          432 SIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSY  511 (598)
Q Consensus       432 ~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~f  511 (598)
                      ..+++..++..+..++.+.++|++..|+|..+...+.......+...+...+...+      ++.++.+.++.+++...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s------~~~l~~~~~l~gi~~a~~  125 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNS------VPLLFAALFLMGIHSALF  125 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHhh
Confidence            56788889999999999999999999999877543322222222222222222111      222222334444455567


Q ss_pred             hhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhccC
Q 007555          512 DIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIAND  555 (598)
Q Consensus       512 dl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~~~  555 (598)
                      .....+++-+.+|++++++.+|...+..++..+++ .+.|++...
T Consensus       126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~  170 (1140)
T PRK06814        126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS  170 (1140)
T ss_pred             chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            78889999999999999999999999998886554 444665553

>PRK09669 putative symporter YagG; Provisional

Probab=96.98  E-value=0.0081  Score=65.83  Aligned_cols=161  Identities=11%  Similarity=-0.008  Sum_probs=95.5

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          144 AHPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       144 ~r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      .+|+.|+.+....++..++..+..-..+.|.....+..-..+.+.....++.++..++.|.++||++||+.++...++..
T Consensus       226 ~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~  305 (444)
T PRK09669        226 LGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFV  305 (444)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            37888999999988888888766544443433344444444555566678888888999999999999998876643321


Q ss_pred             HHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCch----hHHHHHHHHHHH
Q 007555          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRP----IALAKANAVLNR  299 (598)
Q Consensus       224 ~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~----~~L~~aNa~l~~  299 (598)
                      +.     ....+.  ..+  ++  .+.+++..++.+.......+... ++-.|    +++.++.    ..-....+....
T Consensus       306 ~~-----~~~~~~--~~~--~~--~~~~~~~~~i~g~~~~~~~~~~~-am~ad----~~d~~e~~~G~r~~g~~~s~~~~  369 (444)
T PRK09669        306 IL-----SALIFF--IPP--SN--VWLIFALNILFNFIQNLTTPLQW-SMFSD----VVDYEEKRSGRRLDGLVFSTNLF  369 (444)
T ss_pred             HH-----HHHHHH--hCc--ch--HHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhhhhhhhcCcCcchHHHHHHHH
Confidence            11     111111  111  11  12233333444444444443332 23334    5442200    011234677777


Q ss_pred             HHHHHHHhhHHHHHHHHhhhc
Q 007555          300 IDLLCEIAGASLFGILLSKYE  320 (598)
Q Consensus       300 id~~~~i~GP~lgGlL~s~~~  320 (598)
                      .+.++..+||.++|.+++..|
T Consensus       370 ~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        370 AIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            788999999999999988765

>PRK09848 glucuronide transporter; Provisional

Probab=96.97  E-value=0.0081  Score=65.84  Aligned_cols=160  Identities=11%  Similarity=0.025  Sum_probs=100.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      +||.|..+....++...+-..+....|.|.....+ +....+++.....+..++.+|+.|.+.||+++|++++.+-++..
T Consensus       226 ~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~  305 (448)
T PRK09848        226 RNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGT  305 (448)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            78889999999988888887777777777766667 55554454554566778889999999999999998876654322


Q ss_pred             HHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCc----hhHHHHHHHHHHH
Q 007555          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINR----PIALAKANAVLNR  299 (598)
Q Consensus       224 ~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~----~~~L~~aNa~l~~  299 (598)
                      +    .+.+ .+ .. ..  .+  .+.+++..++.+.......+... ++..|    +++.++    +++-...++..+.
T Consensus       306 i----~~~~-~~-~~-~~--~~--~~~~~~~~~l~g~G~~~~~~~~~-al~~~----~~~~~~~~~g~r~~G~~~~~~~~  369 (448)
T PRK09848        306 C----GYLL-FF-WV-SV--WS--LPVALVALAIASIGQGVTMTVMW-ALEAD----TVEYGEYLTGVRIEGLTYSLFSF  369 (448)
T ss_pred             H----HHHH-HH-Hc-Cc--hh--HHHHHHHHHHHHHHHHHHHHHHH-HHHHH----hhhhhHHhhCccchhHHHHHHHH
Confidence            1    1212 11 11 11  11  12233333444444444443332 22233    443220    0123567888888


Q ss_pred             HHHHHHHhhHHHHHHHHhhhc
Q 007555          300 IDLLCEIAGASLFGILLSKYE  320 (598)
Q Consensus       300 id~~~~i~GP~lgGlL~s~~~  320 (598)
                      .+.++..+||.+.|.+++..|
T Consensus       370 ~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        370 TRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            888999999999999887654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.96  E-value=0.99  Score=50.73  Aligned_cols=40  Identities=20%  Similarity=0.195  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHH
Q 007555          183 PVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (598)
Q Consensus       183 ~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q  222 (598)
                      ..+.+.....+...+.+++.|.++|+++||+.|+.+.+.-
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~  129 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLF  129 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4478888889999999999999999999999999888653

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=96.91  E-value=0.11  Score=56.81  Aligned_cols=145  Identities=17%  Similarity=0.132  Sum_probs=91.7

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL  495 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~  495 (598)
                      ..++++....+.|.+....|...+..+.+..+|+.....+.+|+...+..++.+.    ++..+-......+     .+.
T Consensus        32 ~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~----lFi~~n~l~alAp-----~f~  102 (394)
T COG2814          32 PVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA----LFIVSNLLSALAP-----SFA  102 (394)
T ss_pred             HHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH----HHHHHHHHHHHhc-----cHH
Confidence            4456777777899999999999999999999999999999999988776654322    1111111111110     122


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhccCcchhHHHHHHHHHHHHH
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIANDVSHFGFLATLSLLSVVG  572 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~~~~~~f~~l~l~S~~~V~~  572 (598)
                      +++.+=++..+.+-.|-.....+.=+.+|+++|||..++..+=.+++..++ .+.+.++   +.|+|-....+.++..
T Consensus       103 ~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig---~~~GWR~~F~~ia~l~  177 (394)
T COG2814         103 VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG---QLFGWRATFLAIAVLA  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH---HHhhHHHHHHHHHHHH
Confidence            233332223333445556677888899999999999999988777775333 3334443   3444544433333333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.88  E-value=0.051  Score=58.35  Aligned_cols=54  Identities=15%  Similarity=0.076  Sum_probs=46.4

Q ss_pred             hhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007555          415 TPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG  468 (598)
Q Consensus       415 ~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~  468 (598)
                      .+.+.++.|+.+ .|+++.+.|++.+...++..++....+++.+|+|..+....+
T Consensus        20 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~   74 (396)
T TIGR00882        20 AYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI   74 (396)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            455677778875 799999999999999999999999999999999987776544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=96.81  E-value=0.11  Score=56.74  Aligned_cols=117  Identities=9%  Similarity=-0.026  Sum_probs=66.2

Q ss_pred             CCChhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccc--chhHHHHHHHHH
Q 007555          428 GLNPSI---IGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQ--QNPLLFFLCLIV  502 (598)
Q Consensus       428 g~s~~~---iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~--~~~~~~~~~~i~  502 (598)
                      +.++..   .+.+.+.+-++..+|+++.+++.+|+|..|...+++.....   ..+......+...  ......++.+=+
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~R~  132 (432)
T PRK10406         56 GNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCF---GSLVIACLPGYETIGTWAPALLLLARL  132 (432)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---HHHHHhhcCCchhHHHHHHHHHHHHHH
Confidence            344543   44555666677779999999999999998877665432211   1111111011000  011112222222


Q ss_pred             HHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHH
Q 007555          503 LSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVML  547 (598)
Q Consensus       503 lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~  547 (598)
                      +.++|.-..-....+++-|..|+++||+..+...........++.
T Consensus       133 l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~  177 (432)
T PRK10406        133 FQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL  177 (432)
T ss_pred             HHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            333343344556778999999999999998887665554433333

>PRK09952 shikimate transporter; Provisional

Probab=96.79  E-value=0.11  Score=56.85  Aligned_cols=148  Identities=14%  Similarity=0.017  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHH
Q 007555          155 CCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMI  233 (598)
Q Consensus       155 gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l  233 (598)
                      ..+...++-.....-.|.|+....+ +...+........+..++..+..|.+.||++|||+++.+-+...+    ....+
T Consensus       258 ~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~----~~~~~  333 (438)
T PRK09952        258 LRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTL----SAFPF  333 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH----HHHHH
Confidence            3444444444444445556655556 655444455555566677788999999999999988765433211    11111


Q ss_pred             HHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHH-HHHHHHhhHHHH
Q 007555          234 IHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI-DLLCEIAGASLF  312 (598)
Q Consensus       234 ~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~i-d~~~~i~GP~lg  312 (598)
                      .......   +.  .+.+++..++.+........... ++..|    +.|.+   ....+++....+ ..+...++|.++
T Consensus       334 ~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~~~-~~~~e----~~p~~---~r~tg~g~~~~~~~~lgg~~~p~i~  400 (438)
T PRK09952        334 FMALEAQ---SI--FWIVFFSIMLANIAHDMVVCVQQ-PMFTE----MFGAS---YRYSGAGVGYQVASVVGGGFTPFIA  400 (438)
T ss_pred             HHHHHcC---Ch--HHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HCCcc---hhHHHHhHHHHHHHHHHHHHHHHHH
Confidence            1111110   11  11111122222222222122221 22223    55542   445567765444 346788999999


Q ss_pred             HHHHhhh
Q 007555          313 GILLSKY  319 (598)
Q Consensus       313 GlL~s~~  319 (598)
                      |.++...
T Consensus       401 g~l~~~~  407 (438)
T PRK09952        401 AALVTYF  407 (438)
T ss_pred             HHHHHhc
Confidence            9998744

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.75  E-value=0.16  Score=56.66  Aligned_cols=120  Identities=6%  Similarity=-0.047  Sum_probs=72.2

Q ss_pred             hhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhH
Q 007555          416 PGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPL  494 (598)
Q Consensus       416 f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~  494 (598)
                      ++.+.+.+.. +.|+++.++|++.++..+++-++-+..+++.+|+|..+...++.....  +......+...+..+....
T Consensus        53 ~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~--i~~~~~~~a~~~~~~s~~~  130 (462)
T PRK15034         53 FSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI--IPCVWLGIAVQNPNTPFGI  130 (462)
T ss_pred             HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH--HHHHHHHHHHcccCCCHHH
Confidence            3344444444 589999999999999998888888889999999999877665443211  1111111111100011112


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHH
Q 007555          495 LFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVAS  540 (598)
Q Consensus       495 ~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~  540 (598)
                      ++.+  -++.+++. ..-...+..+.+..|+++||+.+|+.....+
T Consensus       131 lli~--r~l~Gigg-~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~  173 (462)
T PRK15034        131 FIVI--ALLCGFAG-ANFASSMGNISFFFPKAKQGSALGINGGLGN  173 (462)
T ss_pred             HHHH--HHHHHHHH-HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHh
Confidence            2111  11222222 2335677788899999999999999864443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.73  E-value=0.066  Score=59.99  Aligned_cols=162  Identities=10%  Similarity=0.066  Sum_probs=98.7

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHHH-hhccc--
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVR----RLGILKAGAAGLIFQASLLAMAVAVY-WSGSL--  488 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~r----rlg~~r~g~~~l~~q~~~L~~~v~~~-~~g~~--  488 (598)
                      ..+.+++|+.++|+++...|.+..++.+.+++...+.+++..    |+|..|..+++....   ...+...+ +..+.  
T Consensus        23 ~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~---~~~~l~ll~~~~~~~~   99 (477)
T TIGR01301        23 QLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL---VAFAVILIGFAADIGH   99 (477)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH---HHHHHHHHHhCchhhh
Confidence            345677788889999999999999999999999999999987    588877655421111   11111111 11110  


Q ss_pred             ---------ccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccc--hhHHHHHHHHHHHHHHHHHHhhhhc----
Q 007555          489 ---------SQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKA--NLIGTTEISVASLVESVMLGVAIIA----  553 (598)
Q Consensus       489 ---------~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~r--GRV~sv~~sl~~~~~ll~~~~~i~~----  553 (598)
                               ......+.++.++.+..++.-.+..+..+++=+.+|+++|  ++.++.+.....+-..++++++-+.    
T Consensus       100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~  179 (477)
T TIGR01301       100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYK  179 (477)
T ss_pred             hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                     0011122333333334444445566778899999999865  6888888777777666666665332    


Q ss_pred             --c---------CcchhHHHHHHHHHHHHHHHHHHHHH
Q 007555          554 --N---------DVSHFGFLATLSLLSVVGAAWMFCHW  580 (598)
Q Consensus       554 --~---------~~~~f~~l~l~S~~~V~~a~~l~~~~  580 (598)
                        +         .+.++.+..+++...+......-+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~  217 (477)
T TIGR01301       180 IFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSA  217 (477)
T ss_pred             hcccccccccccccchHHHHHHHHHHHHHHHHHHHeee
Confidence              1         12355666666555555544444333

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.71  E-value=1.5  Score=49.13  Aligned_cols=116  Identities=13%  Similarity=0.018  Sum_probs=65.3

Q ss_pred             ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHH
Q 007555          180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAG  259 (598)
Q Consensus       180 S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg  259 (598)
                      +.....+...+..+-.++-+.+.|.+.||++||++++.+-+++.+...+.    .+  ..     +  ++...+.=++.|
T Consensus       116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~----a~--a~-----~--~~~~~~~Rfl~G  182 (521)
T KOG0255|consen  116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT----AF--AP-----N--YWMFLIFRFLSG  182 (521)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH----HH--hC-----c--HHHHHHHHHHHH
Confidence            44455555556666667777778999999999999999887655442111    11  11     1  122222222333


Q ss_pred             HHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 007555          260 AVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLS  317 (598)
Q Consensus       260 ~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s  317 (598)
                      ....-....... .--|    +++++   +...+-.. ...--...+.+|+.++.+..
T Consensus       183 ~~~~~~~~~~~~-~~~E----~~~~~---~R~~~~~~-~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  183 FFGSGPLTVGFG-LVAE----IVSPK---QRGLALTL-GGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             hhccchhHHhHh-hhee----ecCcc---hhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            222211111111 1123    55543   55666666 66667778888888888887

>TIGR00898 2A0119 cation transport protein

Probab=96.70  E-value=0.043  Score=60.90  Aligned_cols=117  Identities=19%  Similarity=0.125  Sum_probs=76.5

Q ss_pred             HhcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Q 007555          425 TQRGLN---PSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLI  501 (598)
Q Consensus       425 ~~lg~s---~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i  501 (598)
                      .+.+++   +.+.|+..++..+|.++|+++.+++.+|+|..+...++.....+   .++......+      ...++..-
T Consensus       117 ~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i---~~~~~~~~~~------~~~~~~~r  187 (505)
T TIGR00898       117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAV---SGVLTAFSPN------YTVFLVFR  187 (505)
T ss_pred             EEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHH---HHHHHHHccc------HHHHHHHH
Confidence            356887   88999999999999999999999999999987766554332211   1111111111      12222223


Q ss_pred             HHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 007555          502 VLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVA  550 (598)
Q Consensus       502 ~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~~  550 (598)
                      ++.+++..........++.|.+|+++||++.+.......+...+..+++
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  236 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA  236 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455677888999999999999999987555444444443333

>PTZ00207 hypothetical protein; Provisional

Probab=96.65  E-value=0.2  Score=57.61  Aligned_cols=122  Identities=12%  Similarity=0.111  Sum_probs=72.6

Q ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHhhcccccchhHHHHHHHHHH
Q 007555          425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQAS-LLAMAVAVYWSGSLSQQNPLLFFLCLIVL  503 (598)
Q Consensus       425 ~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~-~L~~~v~~~~~g~~~~~~~~~~~~~~i~l  503 (598)
                      .+.|++..+++.+.+.+...|. +.+.++++..|+|+.+...++.....+ .+..+..  ..+..  ..+.+.+....++
T Consensus        55 ~~lgls~~~l~~i~svg~~~g~-~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala--~~~~i--~~s~~~l~l~r~l  129 (591)
T PTZ00207         55 ARYNLTQRDLSTITTVGIAVGY-FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALT--FQEVI--EGSVVRLSVYNGL  129 (591)
T ss_pred             HHhCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hcccc--cCcHHHHHHHHHH
Confidence            3589999999998887665554 455679999999988776655432211 1111111  01100  0122222222333


Q ss_pred             HhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHh-hhh
Q 007555          504 SRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGV-AII  552 (598)
Q Consensus       504 sr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~-~i~  552 (598)
                      .++|...++........+..| ++||++.|+..+...+.. +.+.+. +++
T Consensus       130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555567777777888876 678999999988877764 334333 444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.63  E-value=0.14  Score=57.67  Aligned_cols=131  Identities=11%  Similarity=0.097  Sum_probs=81.8

Q ss_pred             hhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Q 007555          416 PGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL-GILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNP  493 (598)
Q Consensus       416 f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrl-g~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~  493 (598)
                      ....++.|+.+ +|+++...+.+.+...++..++.++.+++.+|+ |..|...++......    +.........  ...
T Consensus        28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l----g~lll~~~~~--~~~  101 (493)
T PRK15462         28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI----GHVVLGASEI--HPS  101 (493)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH----HHHHHHHhhc--chh
Confidence            44567778764 799999999999999999999999999999998 988877665443221    1111111100  011


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCc--cchhHHHHHHHHHHHHH-HHHHHhhhhcc
Q 007555          494 LLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSS--KANLIGTTEISVASLVE-SVMLGVAIIAN  554 (598)
Q Consensus       494 ~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~--~rGRV~sv~~sl~~~~~-ll~~~~~i~~~  554 (598)
                      .+......+.  +|...+.....+++.+..|++  +|++.++...+..++.. ..+.+.+.+..
T Consensus       102 ~~~l~l~li~--iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~  163 (493)
T PRK15462        102 FLYLSLAIIV--CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE  163 (493)
T ss_pred             HHHHHHHHHH--HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence            1111111111  233233344567778888875  79999999998888764 34444455543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=96.54  E-value=0.14  Score=57.03  Aligned_cols=61  Identities=18%  Similarity=0.046  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHH
Q 007555          159 GNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLN  219 (598)
Q Consensus       159 S~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d  219 (598)
                      ..++......-+|.|+....+ +....+++.....+..++..+..|.+.||++||++++..-
T Consensus       262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~  323 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGS  323 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            334444455567777766666 6666666666666777788899999999999999877554

>PRK15075 citrate-proton symporter; Provisional

Probab=96.54  E-value=0.094  Score=57.28  Aligned_cols=54  Identities=17%  Similarity=0.115  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHH
Q 007555          166 WNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLN  219 (598)
Q Consensus       166 ~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d  219 (598)
                      ...-.|.|+.+..+ +....+.+.....+..++..+..|.+.||++||++++..-
T Consensus       257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~  311 (434)
T PRK15075        257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFT  311 (434)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            33346777766667 7777777777777778888999999999999999877653

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.52  E-value=0.23  Score=55.75  Aligned_cols=132  Identities=14%  Similarity=0.117  Sum_probs=71.3

Q ss_pred             hhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Q 007555          416 PGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRR-LGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNP  493 (598)
Q Consensus       416 f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rr-lg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~  493 (598)
                      ....++.|+. ++|+++...+.+.+...........+.+++.+| +|..+...++.....    .+........  ....
T Consensus        40 ~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~----ig~~l~~~~~--~~~~  113 (500)
T PRK09584         40 LQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLA----IGYALVAWSG--HDAG  113 (500)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----HHHHHHHHhc--ccHH
Confidence            4456777875 589999888777766554444445678999999 598777665543221    1111111110  0111


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCcc--chhHHHHHHHHHHHHH-HHHHHhhhhccC
Q 007555          494 LLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSK--ANLIGTTEISVASLVE-SVMLGVAIIAND  555 (598)
Q Consensus       494 ~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~--rGRV~sv~~sl~~~~~-ll~~~~~i~~~~  555 (598)
                      .+.  .+.++..+|.-.+.....+++.+..|++.  +++.++...+..+... +.+.+.+.+.+.
T Consensus       114 ~l~--~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~  176 (500)
T PRK09584        114 IVY--MGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK  176 (500)
T ss_pred             HHH--HHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111  11222223333344455677777777653  4557776666555554 344555666443

>PTZ00207 hypothetical protein; Provisional

Probab=96.48  E-value=2.3  Score=49.02  Aligned_cols=157  Identities=11%  Similarity=-0.017  Sum_probs=90.4

Q ss_pred             CCC-CCchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHH
Q 007555          142 TPA-HPEGLYALYACCLAGNLVEQLWNFAW--PSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYIC  217 (598)
Q Consensus       142 ~~~-r~r~f~~L~~gq~lS~~G~~i~~fAl--pL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~  217 (598)
                      .|. +.+.+..+.++-++...+...+.|.+  |- +....+ |...++....+. ...-.+.+++|.+.||++||+++..
T Consensus        19 ~~~~e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~-L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vlli   96 (591)
T PTZ00207         19 KPINEPRRFALLVLGAFCSICTSFMYAFNLISGA-MQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVL   96 (591)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            344 44556667777666666665555554  32 345556 777777766543 2334567788999999999999987


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHH
Q 007555          218 LNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVL  297 (598)
Q Consensus       218 ~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l  297 (598)
                      +-+.-.+.    ..+ .+ +.... .-....+.+++..++.|..+..+.++....+. +|.|    +    +-.++.+..
T Consensus        97 g~ll~~iG----~ll-~a-la~~~-~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~-~~Fp----~----~RG~a~Gi~  160 (591)
T PTZ00207         97 SMTVFCLG----TLL-FA-LTFQE-VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVL-SVFP----S----NRGAVVAIM  160 (591)
T ss_pred             HHHHHHHH----HHH-HH-HHhcc-cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCh----h----hhHHHHHHH
Confidence            76543222    111 11 11100 00001244455555666666666665555443 3654    2    346788888


Q ss_pred             HHHHHHHH-HhhHHHHHHHH
Q 007555          298 NRIDLLCE-IAGASLFGILL  316 (598)
Q Consensus       298 ~~id~~~~-i~GP~lgGlL~  316 (598)
                      .....++. +++|+..+++.
T Consensus       161 ~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        161 KTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88777776 45666666554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.48  E-value=0.11  Score=58.33  Aligned_cols=129  Identities=13%  Similarity=0.040  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhh
Q 007555          434 IGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDI  513 (598)
Q Consensus       434 iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl  513 (598)
                      .+.+.++..+||++|++..+.+.+|+|...........+..   .++.......   ..+.-++..|=.+.++.......
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~---~~~~~~~s~~---~~~~e~li~GR~i~Gl~~gl~~~  135 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVL---AALLMGLSKS---APSFEMLILGRLIVGLACGLSTG  135 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH---HHHHHHHHHH---hhhHHHHHHHHHHHHHHhHHHHH
Confidence            45556778899999999999999999987554433322211   1111111100   01122222232222222223455


Q ss_pred             hhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHhh--hhccCcchhHHHHHHHHH
Q 007555          514 VGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVA--IIANDVSHFGFLATLSLL  568 (598)
Q Consensus       514 ~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~~--i~~~~~~~f~~l~l~S~~  568 (598)
                      ...-++||.-|++.||.+.......-.+..++++..+  -++...+..+++.....+
T Consensus       136 ~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i  192 (485)
T KOG0569|consen  136 LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLI  192 (485)
T ss_pred             HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHH
Confidence            6666799999999999999888877777767775554  344455555555444444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.24  E-value=0.32  Score=54.56  Aligned_cols=132  Identities=16%  Similarity=0.090  Sum_probs=77.6

Q ss_pred             hhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Q 007555          416 PGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRR-LGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNP  493 (598)
Q Consensus       416 f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rr-lg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~  493 (598)
                      ..+.++.|+. ++|++....+.+.+.......+...+.+++.+| +|..|+..++.....+.   .+........   ..
T Consensus        33 ~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g---~~~~~~~~~~---~~  106 (489)
T PRK10207         33 VQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG---YFMTGMSLLK---PD  106 (489)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH---HHHHHHhccc---hh
Confidence            3456677876 489999888888877776666677789999998 99998887765432211   1111111111   11


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCc--cchhHHHHHHHHHHHHHHH-HHHhhhhccC
Q 007555          494 LLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSS--KANLIGTTEISVASLVESV-MLGVAIIAND  555 (598)
Q Consensus       494 ~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~--~rGRV~sv~~sl~~~~~ll-~~~~~i~~~~  555 (598)
                      . ++ .+.++..+|.-.+......++-+..|++  +|++.++......++...+ +.+.+.+...
T Consensus       107 l-l~-~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~  169 (489)
T PRK10207        107 L-IF-IALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK  169 (489)
T ss_pred             H-HH-HHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1 11 1222233444344445566777777776  5577777777666666433 3444555443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=96.01  E-value=0.21  Score=55.50  Aligned_cols=121  Identities=13%  Similarity=0.126  Sum_probs=73.5

Q ss_pred             HHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHH-HHHHHHHHHHHHHHHH-HHhhccccc
Q 007555          418 SLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRR----LGILKAG-AAGLIFQASLLAMAVA-VYWSGSLSQ  490 (598)
Q Consensus       418 ~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rr----lg~~r~g-~~~l~~q~~~L~~~v~-~~~~g~~~~  490 (598)
                      ..+..|.++ .|+++..+|.+..+..+...+...+.|.+..|    +|..|-. +++..    ...++.. .+.....+.
T Consensus        27 ~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i----~~~i~~~llf~~p~~~~  102 (473)
T PRK10429         27 MYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTL----ANSVVLFLLFSAHLFEG  102 (473)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhH----HHHHHHHHHHcCCCCCc
Confidence            344555554 79999999999999888887777777887774    4653322 22211    1122212 222211111


Q ss_pred             chhHHHHHHHHHHHhhhhhhhhhhhhhhhhccC-CCccchhHHHHHHHHHHHH
Q 007555          491 QNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGI-PSSKANLIGTTEISVASLV  542 (598)
Q Consensus       491 ~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~V-P~~~rGRV~sv~~sl~~~~  542 (598)
                      ....+.++...++..++..++|++..++.=+.+ ++++|.++++..+...+..
T Consensus       103 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig  155 (473)
T PRK10429        103 TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLA  155 (473)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            111222222333445666788999999999988 6899999999876666544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.97  E-value=0.21  Score=51.86  Aligned_cols=60  Identities=13%  Similarity=-0.038  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHH
Q 007555          156 CLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYI  216 (598)
Q Consensus       156 q~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi  216 (598)
                      ..+-.-||+... -..-|+++.++ .--.++..-+++.-+.++||.++|.++|+.+||+.-+
T Consensus        46 yslmmAgDWLQg-PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracv  106 (454)
T KOG4332|consen   46 YSLMMAGDWLQG-PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV  106 (454)
T ss_pred             HHHHHhhhhhcC-ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhcccccee
Confidence            344455555432 11123455556 5667888888889999999999999999999999644

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.70  E-value=4.5  Score=44.95  Aligned_cols=285  Identities=12%  Similarity=0.001  Sum_probs=134.0

Q ss_pred             CCchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLV--EQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G--~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q  222 (598)
                      .+|+...|.+=.+++.-+  .++..-++.=++-..++|.-..-....+..+-.+.++-++=.+.|++.=|......-+..
T Consensus        40 y~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln  119 (480)
T KOG2563|consen   40 YPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN  119 (480)
T ss_pred             chhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence            444444444444443333  333333333445555666666677777777788888889999999999888776655443


Q ss_pred             HHHHHHHHHHHHHHhhhccCCccchHH-HHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHH
Q 007555          223 AAAQLLSAAMIIHAHTVIPTSSSMLLH-PWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (598)
Q Consensus       223 ~~~v~ls~~~l~~~~~~~~~~~~~l~~-~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id  301 (598)
                      .+...+.+..  ..-..+    ..... ....--.+.+..+.+....- .-+..-|-|    +   ++...||+.--..+
T Consensus       120 ~iGa~Ir~is--s~p~v~----~~f~~~l~~~Gq~iaa~Aq~Fim~lP-skiA~~WF~----~---~qra~A~~~~v~~n  185 (480)
T KOG2563|consen  120 GIGAWIRLIS--SLPFVP----PLFRRPLTHTGQSIAAAAQPFILGLP-SKIAAVWFP----P---DQRAIATVLGVMGN  185 (480)
T ss_pred             HHHHHHhhhc--cCcccc----ccchhhhhHHhHHHHHHhhhHhhccc-cHHHHhhCC----c---chhhhhhhHHHhcc
Confidence            3321222110  000010    11111 11122223333333333220 011122543    2   26777887766555


Q ss_pred             HHHHHhhHHHHHHHHhhh-c--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccc
Q 007555          302 LLCEIAGASLFGILLSKY-E--PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNI  378 (598)
Q Consensus       302 ~~~~i~GP~lgGlL~s~~-~--~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  378 (598)
                      ++.-.+|-++.-++...- +  ...+....+......+.+..+.+..+.+  ++   +++.++..+.    .+       
T Consensus       186 ~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~--~~---~P~tPps~s~----~~-------  249 (480)
T KOG2563|consen  186 PLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVF--TK---KPPTPPSASQ----AA-------  249 (480)
T ss_pred             hHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc--CC---CCCCCCchhH----hh-------
Confidence            554444444444444322 0  1112221111111111111111112221  11   1111111000    00       


Q ss_pred             hhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHH---HhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          379 VDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFL---TQRGLNPSIIGGFSGLCASMGVAATFLSAYL  455 (598)
Q Consensus       379 ~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl---~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l  455 (598)
                      .+  =.+..++.+-.++++-+...+....+.+   ..|.++.+..-   .-.|++...-|..-..+.++|.+|+.+++.+
T Consensus       250 ~~--~~~f~~si~~~~~n~~F~il~~~ygi~~---g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii  324 (480)
T KOG2563|consen  250 LQ--DASFPKSIKSCFKNRQFIILAICYGIGL---GLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGII  324 (480)
T ss_pred             hh--cCcHHHHHHHHHcCccHHHHHHHHhhhH---HHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhh
Confidence            00  0135667777888877654322222222   34555555543   2368877777888888889999999999999


Q ss_pred             HHhhhhhHH
Q 007555          456 VRRLGILKA  464 (598)
Q Consensus       456 ~rrlg~~r~  464 (598)
                      ..|.+-.+.
T Consensus       325 ~Dktk~fk~  333 (480)
T KOG2563|consen  325 ADKTKKFKL  333 (480)
T ss_pred             hhhhhhHHH
Confidence            887765544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.62  E-value=0.2  Score=54.94  Aligned_cols=183  Identities=15%  Similarity=0.110  Sum_probs=107.1

Q ss_pred             HHHHHHHHHhcCCchHHH-HHHHHHHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007555          385 AIKLGWKEYMQQPVLPAS-LAYVLLCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (598)
Q Consensus       385 ~i~eG~~~~~~~pvll~~-l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r  463 (598)
                      ++.+-++.+ |-+++... +.++..|++= -.|+..++....+.|+|.+++|++.++..+.=-++=++.+.+..|.++.+
T Consensus        18 ~~~~~y~~~-r~qif~~~fiGYa~fYl~R-knF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~   95 (448)
T COG2271          18 EIDKTYKRW-RIQIFLSIFIGYAAFYLTR-KNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY   95 (448)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce
Confidence            334444433 33344432 3345555543 35554455544456799999999999999988889999999999999876


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHhhcccccchhHHHHHHHHHHHhhhh-hhhhhhhhhhhhccCCCccchhHHHHHHHHHHH
Q 007555          464 AGAAGLIFQAS-LLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGH-MSYDIVGAQILQTGIPSSKANLIGTTEISVASL  541 (598)
Q Consensus       464 ~g~~~l~~q~~-~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl-~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~  541 (598)
                      ....++....+ ++.++..          .++.++....++.++.= |. --+....+-..-|.++|||..|+-++-.+.
T Consensus        96 fm~~gLilsai~nil~Gfs----------~s~~~~~~l~~lng~fQg~G-wpp~~~~i~~Wfsr~eRG~~~siWn~shNi  164 (448)
T COG2271          96 FMAFGLILSAIVNILFGFS----------PSLFLFAVLWVLNGWFQGMG-WPPCARTITHWFSRKERGTWWSIWNTSHNI  164 (448)
T ss_pred             eehHHHHHHHHHHHHHhhh----------hHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHcCccccCceEEEehhhhhc
Confidence            65555433221 1122211          12223332222222110 11 123445666788999999999998877776


Q ss_pred             HH-HHHHHh--hhhccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007555          542 VE-SVMLGV--AIIANDVSHFGFLATLSLLSVVGAAWMFCHW  580 (598)
Q Consensus       542 ~~-ll~~~~--~i~~~~~~~f~~l~l~S~~~V~~a~~l~~~~  580 (598)
                      -. +.+.+.  +.+...-+-......-++.++..+.+++..-
T Consensus       165 GGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~  206 (448)
T COG2271         165 GGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL  206 (448)
T ss_pred             ccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            53 444444  5555555555555666777777766665544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.53  E-value=5.5  Score=44.75  Aligned_cols=192  Identities=17%  Similarity=0.151  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007555          385 AIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSI----IGGFSGLCASMGVAATFLSAYLVRRLG  460 (598)
Q Consensus       385 ~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~----iG~~~g~gavgGLlGtl~~~~l~rrlg  460 (598)
                      .+.||+++.+++|.++....+.++|...........-..+++..-++..    .|-+...-++..++--+..+++.||.|
T Consensus       252 ~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~G  331 (472)
T TIGR00769       252 STMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYG  331 (472)
T ss_pred             CHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5789999999999998765555555332111222222333443334433    344444444444444455589999998


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh---hccc-c------cchh--HHHHHH--HHHHHhhhhhhhhhhhhhhhhccCCCc
Q 007555          461 ILKAGAAGLIFQASLLAMAVAVYW---SGSL-S------QQNP--LLFFLC--LIVLSRLGHMSYDIVGAQILQTGIPSS  526 (598)
Q Consensus       461 ~~r~g~~~l~~q~~~L~~~v~~~~---~g~~-~------~~~~--~~~~~~--~i~lsr~Gl~~fdl~~~~l~Q~~VP~~  526 (598)
                      ...+....-.   .++..++..+.   .+.. .      ...+  +..+.+  ..++.|.+=..+.=+...+.-.-+++|
T Consensus       332 w~~~a~i~Pi---i~lit~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~~g~~~~v~~k~~kYsl~dp~kEmly~pld~e  408 (472)
T TIGR00769       332 WLTAALITPL---VMLLTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVYVGAIQNILSKSTKYSLFDATKEMAYIPLDEE  408 (472)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHhcccchhhhhhhccChHHHHHHHHHHHHHHHHHhhhccccHHHHHhcccCCHH
Confidence            7654432211   11111111110   0000 0      0001  112222  234455443333333445555667888


Q ss_pred             cchhHHHHHHHHHHHH-H-HHHH---HhhhhccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007555          527 KANLIGTTEISVASLV-E-SVML---GVAIIANDVSHFGFLATLSLLSVVGAAWMFCHW  580 (598)
Q Consensus       527 ~rGRV~sv~~sl~~~~-~-ll~~---~~~i~~~~~~~f~~l~l~S~~~V~~a~~l~~~~  580 (598)
                      .|.+.=+..-.+..=. . .++.   ++...+... ......+..+..+.+..|++..+
T Consensus       409 ~K~K~Ka~iD~v~~r~Gks~gs~i~~~l~~~~~~~-~~~~~~~~~i~~~i~~~Wi~~v~  466 (472)
T TIGR00769       409 QKVKGKAAIDVVAARLGKSGGALIQQGLLVIFGSL-AASTPYLAVILLIIVTAWLAAAK  466 (472)
T ss_pred             HHHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence            8877766665554422 2 1111   111111111 13455566666666666776543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.49  E-value=0.11  Score=60.17  Aligned_cols=127  Identities=16%  Similarity=0.103  Sum_probs=86.3

Q ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHhhccc------------c
Q 007555          423 FLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI-FQASLLAMAVAVYWSGSL------------S  489 (598)
Q Consensus       423 yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~-~q~~~L~~~v~~~~~g~~------------~  489 (598)
                      .-++.++++.+.|++.+..-++.+++.+..+++.+|.|..|...++.. ....++..++.-+..+..            +
T Consensus        59 iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        59 IERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             hhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            334579999999999999999999999999999999887665444322 111222222221111100            0


Q ss_pred             ---------------------------c--chhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHH
Q 007555          490 ---------------------------Q--QNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVAS  540 (598)
Q Consensus       490 ---------------------------~--~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~  540 (598)
                                                 .  ...+.+++.+-++.++|...+.....+++-+.+|++.||+..|+..+...
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence                                       0  01233444456666677767778888999999999999999999998888


Q ss_pred             HHHHHHHHh
Q 007555          541 LVESVMLGV  549 (598)
Q Consensus       541 ~~~ll~~~~  549 (598)
                      +...+++++
T Consensus       219 iG~~lG~ll  227 (633)
T TIGR00805       219 FGPAFGYLL  227 (633)
T ss_pred             hhhHHHHHH
Confidence            776666555

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.42  E-value=0.76  Score=51.52  Aligned_cols=153  Identities=15%  Similarity=0.096  Sum_probs=84.9

Q ss_pred             CchhHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HcCChhHHHHHHHHHHHHHHHcccccceeeccCC--chHHHHHH
Q 007555          146 PEGLYALYACCLAGNL---VEQLWNFAWPSAIAL--LHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSP--RIPAYICL  218 (598)
Q Consensus       146 ~r~f~~L~~gq~lS~~---G~~i~~fAlpL~v~~--lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~--Rr~vmi~~  218 (598)
                      ..+++.+|+.-..|.+   +..++.-..==|+-.  .+.+....|+...+..+...+++|.-|.|--|..  ||+++..+
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~  109 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF  109 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence            3345555555544444   333333322234433  5567788899999999999999999999999998  67776655


Q ss_pred             HHHHHHHHHHHHHHHHH-HhhhccCCccchHHHHHHHHHHHHHHHHHHhhh-hhhhccccceeeecCCCchhHHHHHHHH
Q 007555          219 NTVQAAAQLLSAAMIIH-AHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVA-LGVAVERDWAVLLAGINRPIALAKANAV  296 (598)
Q Consensus       219 d~~q~~~v~ls~~~l~~-~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a-~~~aIerdwvp~Iv~~~~~~~L~~aNa~  296 (598)
                      .+ +    .+.+.  ++ .....+  +..    .|+.++    .+.+.+.+ ...++-|.|+---   ...++-.||-+.
T Consensus       110 ii-~----~~g~l--lY~~l~~~~--~~~----~y~mL~----~R~l~Gvg~~n~a~lR~Y~a~~---s~~~dR~rA~a~  169 (488)
T KOG2325|consen  110 LI-A----IIGNL--LYLALAYVP--NGV----KYLMLV----ARILTGVGVGNFAVLRAYIADA---STVEDRPRAFAA  169 (488)
T ss_pred             HH-H----HHHHH--HHHHHHhcc--cch----HHHHHH----HHHHcCcCcccHHHHHHHHHhc---cCccchHHHHHH
Confidence            32 1    12222  23 222222  111    122211    12222222 1233445443321   122356677777


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhh
Q 007555          297 LNRIDLLCEIAGASLFGILLSK  318 (598)
Q Consensus       297 l~~id~~~~i~GP~lgGlL~s~  318 (598)
                      ......++.++||.++-++-+.
T Consensus       170 ~~~~~vlg~ilGp~~q~~f~~L  191 (488)
T KOG2325|consen  170 TSGGFVLGIILGPTIQLAFTPL  191 (488)
T ss_pred             hhhHHHHHHHHhHHHHHHHhhh
Confidence            7777788899999888766543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=95.38  E-value=0.66  Score=50.77  Aligned_cols=157  Identities=16%  Similarity=0.116  Sum_probs=97.0

Q ss_pred             CCchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHH
Q 007555          145 HPEGLYA---LYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (598)
Q Consensus       145 r~r~f~~---L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~  220 (598)
                      ++++.++   +|...+=+..|   ....+|.|..+.++ |....+.+++...++..+.=|.+|.+.||++.+|++...-.
T Consensus       216 ~~~~~W~lsllY~~tFG~Fvg---fs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~  292 (417)
T COG2223         216 SNKDTWLLSLLYFATFGGFVG---FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFV  292 (417)
T ss_pred             cCcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHH
Confidence            4555444   55554444433   56778999999999 99999999999999999999999999999998887664433


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCccchHHHHHHH-HHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHH
Q 007555          221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFV-LVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNR  299 (598)
Q Consensus       221 ~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv-~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~  299 (598)
                      +-++    ...++.+. ....+ .... ...+++ .+.+.   .+....+. ++-| ++|.+-++    +...+++....
T Consensus       293 ~~~~----~~~~l~~~-~~~~~-~~~~-~~~~~~~~l~l~---~~~G~GnG-svfk-~Ip~if~~----~~G~v~G~vga  356 (417)
T COG2223         293 GMAL----AAALLSLF-LTGFG-HGGS-FVVFVAVFLALF---VFAGLGNG-SVFK-MIPVIFPK----ETGAVTGIVGA  356 (417)
T ss_pred             HHHH----HHHHHHcc-ccccc-cCcc-hHHHHHHHHHHH---HHhccCcc-hhee-echHHHHh----hhhHHHHHHHH
Confidence            2111    11111111 10000 0011 112222 22232   33333343 2333 56766542    67778888887


Q ss_pred             HHHHHHHhhHHHHHHHHhhhc
Q 007555          300 IDLLCEIAGASLFGILLSKYE  320 (598)
Q Consensus       300 id~~~~i~GP~lgGlL~s~~~  320 (598)
                      +-.+....=|..-|..+...|
T Consensus       357 ~G~lGGf~lp~~~g~~~~~tg  377 (417)
T COG2223         357 IGGLGGFFLPLAFGVSLDLTG  377 (417)
T ss_pred             hccccccchhHHHHHHHHhcc
Confidence            777777777888888888777

>TIGR01272 gluP glucose/galactose transporter

Probab=95.34  E-value=0.96  Score=47.48  Aligned_cols=154  Identities=10%  Similarity=-0.078  Sum_probs=87.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALL--HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~l--t~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~  221 (598)
                      +++.+.....+.++-.-++.-..--.+.|+.+.  .+ +....+.+........++-....+.++||+++||+++.+-+.
T Consensus       138 ~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l  217 (310)
T TIGR01272       138 QFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL  217 (310)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            555666655666665545544444467777644  46 888888888888888888889999999999999987765433


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHH-HhhhhhhhccccceeeecCCCchhHHHHHHHHHHHH
Q 007555          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERL-TGVALGVAVERDWAVLLAGINRPIALAKANAVLNRI  300 (598)
Q Consensus       222 q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l-~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~i  300 (598)
                      ..+.    . + +.....    ..   ..++ ..++.+..... +-.....+.+.      .+    ++-.++.+.+ ..
T Consensus       218 ~~~~----~-~-l~~~~~----~~---~~~~-~~~l~g~~~s~i~P~~~s~a~~~------~~----~~~~~asai~-~~  272 (310)
T TIGR01272       218 AVLL----S-I-GAALTH----GY---VAMW-FVLALGLFNSIMFPTIFSLALNA------LG----RHTSQGSGIL-CL  272 (310)
T ss_pred             HHHH----H-H-HHHHcC----CH---HHHH-HHHHHHHHHHHHHHHHHHHHHhh------hh----hhhhhhHHHH-HH
Confidence            2211    1 1 111111    11   1122 22233333222 22223222221      12    1333555554 55


Q ss_pred             HHHHHHhhHHHHHHHHhhhchhH
Q 007555          301 DLLCEIAGASLFGILLSKYEPVT  323 (598)
Q Consensus       301 d~~~~i~GP~lgGlL~s~~~~~~  323 (598)
                      ..+...++|.+.|.+....|...
T Consensus       273 ~~~Gg~i~P~l~G~lad~~g~~~  295 (310)
T TIGR01272       273 AIVGGAIVPLLQGSLADCLGIQL  295 (310)
T ss_pred             HHhcchHHHHHHHHHHHhccchH
Confidence            66678899999999988777443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=95.25  E-value=2.5  Score=46.31  Aligned_cols=56  Identities=16%  Similarity=0.177  Sum_probs=45.8

Q ss_pred             HHHHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007555          408 LCLNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILK  463 (598)
Q Consensus       408 L~~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r  463 (598)
                      +++.+...+.+.+..|+++.|+++.++|.+.+.+.+..+++....+.+.+|.+..+
T Consensus        13 ~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~   68 (400)
T PF03825_consen   13 LYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAK   68 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH
Confidence            33443355666777899999999999999999999999999999999999876443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=95.21  E-value=0.6  Score=52.49  Aligned_cols=123  Identities=11%  Similarity=0.072  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhh
Q 007555          432 SIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSY  511 (598)
Q Consensus       432 ~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~f  511 (598)
                      ...+++.+...+|+.+|++.++++.+++|..++...+....   ....+......      ....+..|=++.++|.-..
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~---~iG~ii~~~a~------~~~~l~~GR~l~G~g~G~~  159 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLF---LIGAIIIALAP------SWYQLIVGRILTGLGVGGA  159 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHhh------hHHHHHHHHHHhccchhhh
Confidence            35589999999999999999999999999887766543321   11111111111      2333444545555666677


Q ss_pred             hhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHhhhhccCcchhHHHHH
Q 007555          512 DIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLAT  564 (598)
Q Consensus       512 dl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~~i~~~~~~~f~~l~l  564 (598)
                      +...-.+.=|..|++.||+..+.......+..+.++..+...+... .+|-..
T Consensus       160 ~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~-~~Wr~~  211 (513)
T KOG0254|consen  160 SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVY-AGWRIP  211 (513)
T ss_pred             hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCC-ccHHHH
Confidence            7788888888889999999999888777766777888877776652 444433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.98  E-value=0.42  Score=53.47  Aligned_cols=127  Identities=13%  Similarity=0.059  Sum_probs=80.1

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhh
Q 007555          427 RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRL  506 (598)
Q Consensus       427 lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~  506 (598)
                      ..+++.+-|++.+....|.+++.+-.+++.+|+|..+...++.......  -.+.+....     ...+.++..=++.++
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~--t~l~P~aa~-----~~~~~~~~~R~lqGl  140 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALL--TLLTPLAAS-----IGFYLLLVLRFLQGL  140 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHH--HHHHHHHHH-----hcchhhHHHHHHhHH
Confidence            4678889999999999999999999999999999887766544322111  011111111     001111111111222


Q ss_pred             hhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhccCcchhHHH
Q 007555          507 GHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIANDVSHFGFL  562 (598)
Q Consensus       507 Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~~~~~~f~~l  562 (598)
                      +....--+...+..+..|+.+|+|..++..+-..+..... .+.|.+-..  .+||.
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~  195 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWP  195 (466)
T ss_pred             HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCc
Confidence            2223345677899999999999999999998887765444 355655444  45555

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=94.81  E-value=1.3  Score=45.62  Aligned_cols=132  Identities=15%  Similarity=0.185  Sum_probs=76.3

Q ss_pred             HH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh---hcccccchhHHHHHH
Q 007555          424 LT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW---SGSLSQQNPLLFFLC  499 (598)
Q Consensus       424 l~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~---~g~~~~~~~~~~~~~  499 (598)
                      ++ ++|++.+++..+-.++-+|+-+| +..|.+-.+.|+.....++....    ..|-...|   .+..+ ..+.+.+..
T Consensus        28 Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~----~~GY~~~~l~~~~~i~-~~~~~~~~~  101 (250)
T PF06813_consen   28 LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLG----FVGYGLLWLAVSGRIP-SLPVWLMCL  101 (250)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHH----HHHHHHHHHHHhCccC-ccchHHHHH
Confidence            44 57999999999999988888775 77888889998765544433211    11111112   22211 012222222


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHh-hhhccCcchhHHH
Q 007555          500 LIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGV-AIIANDVSHFGFL  562 (598)
Q Consensus       500 ~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~-~i~~~~~~~f~~l  562 (598)
                      ...+...|...+|......--++-|+ .||.|.|+.-+..-+.. +.+.+- +++.++++.|-.+
T Consensus       102 ~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~  165 (250)
T PF06813_consen  102 FLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLF  165 (250)
T ss_pred             HHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHH
Confidence            22233334434565544444466675 79999999888776663 455555 5565656666444

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=94.77  E-value=1.7  Score=42.18  Aligned_cols=149  Identities=21%  Similarity=0.099  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHH
Q 007555          152 LYACCLAGNLVEQLWNFAWPSAIALLHPSL--LPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS  229 (598)
Q Consensus       152 L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~--l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls  229 (598)
                      +..+.+.+.++...+....+.+......+.  ...+.......+...+.+++.|.+.||++||+.+......  .  ...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--~--~~~   82 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLL--F--LLG   82 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHH--H--HHH
Confidence            677778888899999999999998888755  4667777777788888889999999999988766655432  1  111


Q ss_pred             HHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHH-HHHHHHHhh
Q 007555          230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNR-IDLLCEIAG  308 (598)
Q Consensus       230 ~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~-id~~~~i~G  308 (598)
                      ..  ......    . ...+.+.+..+..|.......+.....+ .++.|.  .    .+....++.... ......++|
T Consensus        83 ~~--~~~~~~----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~  148 (338)
T COG0477          83 TL--LLALAP----N-VGLALLLILRLLQGLGGGGLLPVASALL-SEWFPE--A----TERGLAVGLVTLGAGALGLALG  148 (338)
T ss_pred             HH--HHHhCc----c-chHHHHHHHHHHHHhhhHHHHHHHHHHH-HHhcCc--h----hHHHHHHHHHHHHHHHHHHHHH
Confidence            11  111111    0 0012222222223444433333333322 333332  0    145566666666 566778888


Q ss_pred             HHHHHHHHhh
Q 007555          309 ASLFGILLSK  318 (598)
Q Consensus       309 P~lgGlL~s~  318 (598)
                      |.+++.+...
T Consensus       149 ~~~~~~~~~~  158 (338)
T COG0477         149 PLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHH
Confidence            8888877765

>PF12832 MFS_1_like: MFS_1 like family

Probab=94.72  E-value=0.3  Score=40.88  Aligned_cols=52  Identities=27%  Similarity=0.316  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAA  467 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~  467 (598)
                      +.+.++.|++++|+++.++|++.++..+..++++.+.+++.+|.+..|....
T Consensus        19 ~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~   70 (77)
T PF12832_consen   19 LYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL   70 (77)
T ss_pred             HHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence            3334555778899999999999999999999999999999999998776553

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=94.70  E-value=9.5e-06  Score=88.43  Aligned_cols=40  Identities=28%  Similarity=0.233  Sum_probs=33.9

Q ss_pred             hHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHH
Q 007555          182 LPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (598)
Q Consensus       182 l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~  221 (598)
                      ...+....+..+..++-+++.|.+.||++||++++.+.+.
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3567777777888899999999999999999999887754

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=94.58  E-value=1.8  Score=48.08  Aligned_cols=115  Identities=12%  Similarity=0.063  Sum_probs=68.1

Q ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Q 007555          426 QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRR----LGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLI  501 (598)
Q Consensus       426 ~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rr----lg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i  501 (598)
                      ..|+++...|.+..++-+--.+---+.|.+..|    .|..|-  |.++....+.+..+..+.....+.......+....
T Consensus        39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp--~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~  116 (460)
T PRK11462         39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRP--WVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITY  116 (460)
T ss_pred             hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcch--hHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence            489999999998887776665555566666554    444332  22221111111222222222111111122233333


Q ss_pred             HHHhhhhhhhhhhhhhhhhccCC-CccchhHHHHHHHHHHHH
Q 007555          502 VLSRLGHMSYDIVGAQILQTGIP-SSKANLIGTTEISVASLV  542 (598)
Q Consensus       502 ~lsr~Gl~~fdl~~~~l~Q~~VP-~~~rGRV~sv~~sl~~~~  542 (598)
                      ++..++..++|++..++.=+.++ +++|++.++......+..
T Consensus       117 ~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG  158 (460)
T PRK11462        117 TLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAG  158 (460)
T ss_pred             HHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            34466778899999999999987 589999999888777654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.45  E-value=0.33  Score=50.89  Aligned_cols=128  Identities=16%  Similarity=0.084  Sum_probs=83.5

Q ss_pred             HHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHH
Q 007555          171 PSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLH  249 (598)
Q Consensus       171 pL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~  249 (598)
                      |.+..+.+| |+...+-.-........+.+|+-|.++|+++|+-..+.+-..   ..+++=.++.+.  .        +.
T Consensus       288 ~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~---~tl~~H~~l~Ft--~--------ls  354 (459)
T KOG4686|consen  288 PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI---LTLLGHSGLFFT--F--------LS  354 (459)
T ss_pred             HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH---HHHHHhhhHHhh--h--------cc
Confidence            455667788 888777776666777789999999999999999877655432   111111122221  1        01


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhc
Q 007555          250 PWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE  320 (598)
Q Consensus       250 ~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~  320 (598)
                      + |+.+.++|....+-.-+.=+     .|+.++++   +||..+-+.++.|+.+.--+-|.++|++...-|
T Consensus       355 P-y~~m~~lGLsysllAcslWP-----~va~~vpE---~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  355 P-YTSMTFLGLSYSLLACSLWP-----CVASLVPE---EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             H-HHHHHHHhhhHHHHHHHHhh-----hhhhhCCH---HHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            2 33333344333322222222     24557775   499999999999999999999999999977544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=94.24  E-value=0.3  Score=53.72  Aligned_cols=56  Identities=20%  Similarity=0.148  Sum_probs=45.6

Q ss_pred             hhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007555          414 LTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (598)
Q Consensus       414 l~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l  469 (598)
                      ..+.+..+.++.+ .|++++++|.+.+++++..++...++|.+..|+|..|..++.+
T Consensus        24 gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i   80 (412)
T PF01306_consen   24 GIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI   80 (412)
T ss_dssp             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred             HHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence            5566677778875 8999999999999999999999999999999999888776554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=93.61  E-value=5.3  Score=43.31  Aligned_cols=135  Identities=18%  Similarity=0.190  Sum_probs=89.3

Q ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Q 007555          426 QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSR  505 (598)
Q Consensus       426 ~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr  505 (598)
                      +.|++.+..|+..+.=.+.--+.+...+++.||+|..|...+++.    ++..+..  +- +.   .+...++.+..+.+
T Consensus        41 ~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Ll----li~~G~~--iR-~~---~~~~~L~~gt~l~G  110 (395)
T COG2807          41 DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALL----LIAAGIL--IR-SL---GGLPLLFLGTLLAG  110 (395)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHH----HHHHHHH--HH-hc---ccHHHHHHHHHHHH
Confidence            589999999999888777766778899999999999998765432    2222222  11 10   01222333555666


Q ss_pred             hhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHhhhhccCcchh-HHHHHHHHHHHHHH
Q 007555          506 LGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHF-GFLATLSLLSVVGA  573 (598)
Q Consensus       506 ~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~~i~~~~~~~f-~~l~l~S~~~V~~a  573 (598)
                      .|.-+.|+..-.++++.-|++ .|.++|++.+--.+.  .....++..|..+++ +|-.-+..-++.+.
T Consensus       111 ~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~--aaLaa~lavpla~~~~gW~~aL~~WAl~al  176 (395)
T COG2807         111 AGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAG--AALAAALAVPLAQHSGGWRGALGFWALLAL  176 (395)
T ss_pred             hhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHH--HHHHhhhhhHHHHhhccHHHHHHHHHHHHH
Confidence            677788999999999999864 688888877655544  344445666666666 56555555554443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.53  E-value=3.2  Score=43.78  Aligned_cols=154  Identities=12%  Similarity=0.024  Sum_probs=79.4

Q ss_pred             CchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 007555          397 PVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASL  475 (598)
Q Consensus       397 pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~  475 (598)
                      |.+......+.+|+-+..+|-++.+.++.+ -|+|+..-|-+.+.--.-...-+-+++.+..|.|..-  +|....-.. 
T Consensus       264 ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~--~wv~~a~~~-  340 (459)
T KOG4686|consen  264 PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL--WWVASACIL-  340 (459)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee--hhHHHHHHH-
Confidence            444444555666655446777888887775 6998876554443222111122334556677776431  221111000 


Q ss_pred             HHHHHH-HHhh-cccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH-HHHHHHhhhh
Q 007555          476 LAMAVA-VYWS-GSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV-ESVMLGVAII  552 (598)
Q Consensus       476 L~~~v~-~~~~-g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~-~ll~~~~~i~  552 (598)
                      ...+=. .++. -+|   +....++ |.  +   -.+.--..-..+-..||||.+|...|...+++++. ...+.+.|++
T Consensus       341 tl~~H~~l~Ft~lsP---y~~m~~l-GL--s---ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  341 TLLGHSGLFFTFLSP---YTSMTFL-GL--S---YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             HHHHhhhHHhhhccH---HHHHHHH-hh--h---HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence            011111 1111 111   1111111 11  1   01111112344667799999999999999999988 4677777888


Q ss_pred             ccCcchhHHH
Q 007555          553 ANDVSHFGFL  562 (598)
Q Consensus       553 ~~~~~~f~~l  562 (598)
                      .+.-....++
T Consensus       412 ~d~~g~y~~l  421 (459)
T KOG4686|consen  412 ADGDGSYDNL  421 (459)
T ss_pred             ecCCCchhhH
Confidence            7766655555

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=93.28  E-value=5.4  Score=43.79  Aligned_cols=119  Identities=14%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             HHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Q 007555          419 LMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFF  497 (598)
Q Consensus       419 l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~  497 (598)
                      .+++.++ .-+++..+.+.+.-+.-.|=.++++.++++.||+|..+....++.    ....+...+|+...  .....+|
T Consensus        34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~----l~avg~~lF~pAa~--~~~y~~F  107 (422)
T COG0738          34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLL----LYAVGAALFWPAAS--SKSYGFF  107 (422)
T ss_pred             hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHH----HHHHHHHHHhhhhh--hhhHHHH
Confidence            4555555 479999999999988888888999999999999998776665543    22344445564422  1234456


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          498 LCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       498 ~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      +++......|+...+...+.++=..=|++.-.+=.....+.+.+..
T Consensus       108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa  153 (422)
T COG0738         108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGA  153 (422)
T ss_pred             HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHH
Confidence            6655566667778899999999888888665555555555665554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=93.18  E-value=3.9  Score=47.27  Aligned_cols=132  Identities=18%  Similarity=0.166  Sum_probs=70.5

Q ss_pred             HhcCCchHHHHHHHHHHH----HhhhhhhHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007555          393 YMQQPVLPASLAYVLLCL----NVVLTPGSLMTAFLT-QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAA  467 (598)
Q Consensus       393 ~~~~pvll~~l~~~lL~~----~vll~f~~l~~~yl~-~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~  467 (598)
                      |++.|.+...++...+++    .++....+++ +++. +.|-+ ....++.++-.++.-++..+.+++...+|.....+.
T Consensus        36 ~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l-~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~  113 (599)
T PF06609_consen   36 YYRSPRFIASFAAFSLAVIAAYFVLVLPASIL-PYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFII  113 (599)
T ss_pred             ceeCHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHH
Confidence            446666666554332221    1111222333 3444 45644 466677777777777777788899888886543332


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHH
Q 007555          468 GLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEI  536 (598)
Q Consensus       468 ~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~  536 (598)
                      +..    +...|..+-...     ...-.++++.++.++|. ..+......++|.+|...|+...+...
T Consensus       114 g~~----l~vvG~Iv~atA-----~~~~~~iag~~l~Gvga-G~~~~~~~~isEl~p~k~R~~~~~~~~  172 (599)
T PF06609_consen  114 GSL----LGVVGSIVCATA-----QNMNTFIAGMVLYGVGA-GVQELAALAISELVPNKWRGLGLAIAS  172 (599)
T ss_pred             HHH----HHHhHHHHhhcC-----CcHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcccchhhhHhHHHH
Confidence            221    112221111111     12333455666666663 445555667899999988877655443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=93.01  E-value=2.6  Score=47.74  Aligned_cols=155  Identities=16%  Similarity=0.080  Sum_probs=99.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCc-hH-HHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPR-IP-AYICLNTVQ  222 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~R-r~-vmi~~d~~q  222 (598)
                      +++.|..+-.|-.+..+|--+-.+=+|-+.....-+--..+....+....-++.=+..|.++|+... ++ +-..+.++.
T Consensus       296 ~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  296 KDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIA  375 (509)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence            7788999999999999999999999999987443355555555555555556666778889999873 33 333333221


Q ss_pred             HHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHH
Q 007555          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (598)
Q Consensus       223 ~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~  302 (598)
                          +++..  ......     +  +..+....++.|.....+..... .+-.|    +++.   ++++++=+.....+.
T Consensus       376 ----gl~~~--~~p~~~-----~--~~~l~~~~~~fG~~~g~~~~l~~-~i~~~----~~g~---~~l~~a~Gl~l~~~g  434 (509)
T KOG2504|consen  376 ----GLARL--FLPFAT-----T--YVGLIVFSILFGFCVGSFSSLTP-VILVD----LVGL---EKLSNAYGLLLLFQG  434 (509)
T ss_pred             ----HHHHH--HHHHhc-----c--HHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HcCh---hhcchHHHHHHHHhH
Confidence                11111  111111     1  13344444444544333332222 22234    6665   489999999999999


Q ss_pred             HHHHhhHHHHHHHHhhhc
Q 007555          303 LCEIAGASLFGILLSKYE  320 (598)
Q Consensus       303 ~~~i~GP~lgGlL~s~~~  320 (598)
                      +..++||+++|.++...+
T Consensus       435 i~~l~gpPiag~~~d~tg  452 (509)
T KOG2504|consen  435 IGALVGPPIAGLLYDITG  452 (509)
T ss_pred             HHHHcCcccceeeeeccC
Confidence            999999999998887666

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=92.48  E-value=20  Score=39.46  Aligned_cols=136  Identities=15%  Similarity=0.097  Sum_probs=80.7

Q ss_pred             ccccchhhhccCCCCCCCCCcceeecchhhhhhhhhhcccccccccccCcccCcccccCCCCChhhhhhhccCCC-CCch
Q 007555           70 HVAADDEVREDMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNALAATPA-HPEG  148 (598)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~r~  148 (598)
                      ...+|-+++||.+.++.  ..|+-.-+..+.      -+.++.++.+|+++.|+  ++.-.    ++++.++-+- |-.-
T Consensus        12 ~~~~~~~~~~~~~e~~~--V~~~~~~~~s~~------~~~~~~~~~~~~~~~~~--~k~~t----v~ea~~aigfgrfq~   77 (528)
T KOG0253|consen   12 MSPTESKKQEDVSETEL--VYPVELADATIQ------PSKSDDDLFDSNDFSDT--AKSFT----VDEAMNAIGFGRFQW   77 (528)
T ss_pred             cCcchhhHHHhhhhhcc--ccchhhcccccC------CCccccCCccccccccc--cceee----ehhhhhhcCcccchh
Confidence            34566777777765554  345533333332      23345777888888777  22222    2222333333 2111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHH
Q 007555          149 LYALYACCLAGNLVEQLWNFAWPS---AIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV  221 (598)
Q Consensus       149 f~~L~~gq~lS~~G~~i~~fAlpL---~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~  221 (598)
                      +...+.|  ..-..|.|+..-..+   .+...++ +..+.++.+.+..+-.++-+-.-|...|++.||+....+-++
T Consensus        78 yl~~~ag--~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~  152 (528)
T KOG0253|consen   78 YLFFVAG--MGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLV  152 (528)
T ss_pred             hHHHHhh--hHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHH
Confidence            2223333  233344444444433   3455677 888889999999999999999999999999999987766543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=92.47  E-value=3.1  Score=46.60  Aligned_cols=118  Identities=14%  Similarity=0.034  Sum_probs=75.6

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhh
Q 007555          427 RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRL  506 (598)
Q Consensus       427 lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~  506 (598)
                      .+.+.....+..+...+|-++|+++++.+..|+|..+...+++..+.++-   +......+      ...++..=+++++
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~---~~~a~a~~------~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFG---ILTAFAPN------YWMFLIFRFLSGF  183 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHH---HHHHHhCc------HHHHHHHHHHHHh
Confidence            35566777888899999999999999999999999888777665443322   11111111      1122222222222


Q ss_pred             hhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhcc
Q 007555          507 GHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAN  554 (598)
Q Consensus       507 Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~  554 (598)
                      +..........+.=|.+++++||++.+. ........ ++..+.+.+.+
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            3333455667788899999999999999 65665554 34444455555

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.98  E-value=7.3  Score=45.90  Aligned_cols=82  Identities=11%  Similarity=0.219  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 007555          381 VGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGV-AATFLSAYLVRR  458 (598)
Q Consensus       381 ~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGL-lGtl~~~~l~rr  458 (598)
                      ...+|+..-++-++++|++.-.++...+....+.++.+.++-|+.+ .|.+++.--.+.|..++.+. +|.++.|++.||
T Consensus       376 ~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikk  455 (735)
T KOG3626|consen  376 KKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKK  455 (735)
T ss_pred             hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeee
Confidence            3567777788889999998876666666555545676777779874 69999988888888877775 688899999998


Q ss_pred             hhhh
Q 007555          459 LGIL  462 (598)
Q Consensus       459 lg~~  462 (598)
                      +++.
T Consensus       456 fkl~  459 (735)
T KOG3626|consen  456 FKLS  459 (735)
T ss_pred             eccc
Confidence            8754

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=91.85  E-value=0.15  Score=56.31  Aligned_cols=113  Identities=16%  Similarity=0.165  Sum_probs=79.1

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Q 007555          427 RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQA-SLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSR  505 (598)
Q Consensus       427 lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~-~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr  505 (598)
                      .+.+++..|++.....+.=.+++-+++.+.+|.+..+....++.... +.++.+..          .-++.++.+=.+-+
T Consensus        63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs----------~~Fwq~~l~R~~vG  132 (493)
T KOG1330|consen   63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS----------NHFWQVLLCRGFVG  132 (493)
T ss_pred             cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhc
Confidence            58899999999999999999999999999999987665544432211 11111111          12333444444556


Q ss_pred             hhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHh
Q 007555          506 LGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGV  549 (598)
Q Consensus       506 ~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~  549 (598)
                      +|..+++...++++-...|+++|||++++.+..-..-.-++++.
T Consensus       133 iGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vv  176 (493)
T KOG1330|consen  133 IGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVV  176 (493)
T ss_pred             cchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEe
Confidence            78889999999999999999999999998875544433334443

>TIGR00788 fbt folate/biopterin transporter

Probab=90.95  E-value=0.91  Score=50.58  Aligned_cols=131  Identities=13%  Similarity=0.015  Sum_probs=82.0

Q ss_pred             cC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHHHHH-HHHhhhccCCccchHHHHHHHH
Q 007555          178 HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMI-IHAHTVIPTSSSMLLHPWFFVL  255 (598)
Q Consensus       178 t~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l-~~~~~~~~~~~~~l~~~l~vv~  255 (598)
                      .| |+...|+......+..++.....|.+.+|++.|+++..+.++..+.......+. -+....+.  ...  +.+....
T Consensus       283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi--~~~--~~~~~~~  358 (468)
T TIGR00788       283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGI--SDE--VFVLGDS  358 (468)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCC--CCe--eeeeehh
Confidence            45 777888888888889999999999999999999998877765443311100000 00000000  010  1122223


Q ss_pred             HHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhc
Q 007555          256 VLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE  320 (598)
Q Consensus       256 ~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~  320 (598)
                      ++.+....+...+....+.+     +++++   +-...-+.+..++.++..+|+.+||.+...+|
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~-----~~p~~---~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLAR-----LCPSG---CESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHH-----hCCCC---ceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33444444444444333322     56653   56788889999999999999999999999887

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF12832 MFS_1_like: MFS_1 like family

Probab=90.63  E-value=0.32  Score=40.70  Aligned_cols=46  Identities=20%  Similarity=0.222  Sum_probs=39.1

Q ss_pred             HHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHH
Q 007555          171 PSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYIC  217 (598)
Q Consensus       171 pL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~  217 (598)
                      |+|.-+ .| |..++++...+..+..++..|+.|.++||++|+|.+..
T Consensus        24 ~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~   70 (77)
T PF12832_consen   24 PLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL   70 (77)
T ss_pred             hHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence            344443 56 99999999999999999999999999999999987653

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=89.64  E-value=4.1  Score=44.91  Aligned_cols=154  Identities=14%  Similarity=0.064  Sum_probs=97.3

Q ss_pred             CCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQ-LWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ  222 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~-i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q  222 (598)
                      ++++..++.++.++=+=|-. +..++ ..|.....+ |-..+.++++...+-.++.+.++|.+.||++-|+++....+. 
T Consensus       250 ~~~~i~~FLiA~~~~~DGv~til~~~-~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi-  327 (438)
T COG2270         250 GRKNLVLFLIARFFYIDGVNTILAMG-GVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVI-  327 (438)
T ss_pred             cccchHHHHHHHHHHHhhHHHHHHHH-HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHH-
Confidence            55678888777766444433 33333 345555677 999999999999999999999999999999988766554332 


Q ss_pred             HHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHH
Q 007555          223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDL  302 (598)
Q Consensus       223 ~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~  302 (598)
                           .+.+. ++.....   ....  .| +..++.|.   ..++++  +.-|.|.-.++|++   +=.+.=+.....+.
T Consensus       328 -----~~~~~-~~~~~~~---~~~~--f~-i~gll~g~---s~G~~q--A~SRSy~~~lvp~~---k~~~fFglyaltgr  387 (438)
T COG2270         328 -----LSIAA-LYLIFLE---GELD--FW-ILGLLVGT---SLGGAQ--ASSRSYLARLVPKG---KEGRFFGLYALTGR  387 (438)
T ss_pred             -----HHHHH-HHHHHcc---ccHH--HH-HHHHHHHH---hcchHH--HHHHHHHHHhCCCc---cccceeehhhhhhh
Confidence                 12222 1211221   1111  11 11122221   122222  22366666688875   44566777888889


Q ss_pred             HHHHhhHHHHHHHHhhhc
Q 007555          303 LCEIAGASLFGILLSKYE  320 (598)
Q Consensus       303 ~~~i~GP~lgGlL~s~~~  320 (598)
                      .+.+.||.+.|++....|
T Consensus       388 a~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         388 AASFLGPFLVAVITQITG  405 (438)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999988766

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=88.67  E-value=3.6  Score=35.29  Aligned_cols=55  Identities=20%  Similarity=0.132  Sum_probs=44.4

Q ss_pred             hhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007555          415 TPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (598)
Q Consensus       415 ~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l  469 (598)
                      .|..+++....+.+++..+-|++-++.-+|=++|++...++.++.+..+....++
T Consensus        10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l   64 (85)
T PF06779_consen   10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGL   64 (85)
T ss_pred             HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            3556777777789999999999999999999999999999988766555544443

Note that many members are hypothetical proteins.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=87.92  E-value=48  Score=36.63  Aligned_cols=149  Identities=10%  Similarity=0.040  Sum_probs=68.2

Q ss_pred             HhcCCchHHHHHHHHHH-HHhhhhhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 007555          393 YMQQPVLPASLAYVLLC-LNVVLTPGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIF  471 (598)
Q Consensus       393 ~~~~pvll~~l~~~lL~-~~vll~f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~  471 (598)
                      ..+-|-.+....+-+.+ +.+ ..-+++...-+.++|++...+++.--..-..++++.+..+++...-.+...-.-++..
T Consensus       261 vLklk~v~~la~i~lt~K~gf-~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~  339 (510)
T KOG3574|consen  261 VLKLKSVRWLAGILLTGKLGF-QAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPY  339 (510)
T ss_pred             HHcCccHHHHHHHHHHHHHHh-hhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhH
Confidence            44555555433333322 222 2344555556678999999988766444445555555555443321111111111111


Q ss_pred             HHHHHHHHHH-HHhhccccc---ch--hHHH-HHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH
Q 007555          472 QASLLAMAVA-VYWSGSLSQ---QN--PLLF-FLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV  542 (598)
Q Consensus       472 q~~~L~~~v~-~~~~g~~~~---~~--~~~~-~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~  542 (598)
                      -......... +++.+....   ..  ..++ .+..-.+-.......-+..+..--+.-|++.-|.=+...++++++-
T Consensus       340 R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLG  417 (510)
T KOG3574|consen  340 RLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLG  417 (510)
T ss_pred             HHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhc
Confidence            1111122222 333221111   00  1111 1111111111112223445555666778889999999999988876

>PRK03612 spermidine synthase; Provisional

Probab=87.42  E-value=55  Score=37.27  Aligned_cols=53  Identities=15%  Similarity=0.103  Sum_probs=36.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccce
Q 007555          148 GLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGK  204 (598)
Q Consensus       148 ~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGv  204 (598)
                      .-+.++..-++|-+..-++|..+.=++....|+    +++.....+...++|.-.|.
T Consensus        15 ~~~~l~~~~f~sg~~~L~yEv~~~r~l~~~~G~----s~~~~~~ii~~fl~glalGs   67 (521)
T PRK03612         15 DRALLLAAVFVCAACGLVYELLLGTLASYLLGD----SVTQFSTVIGLMLFAMGVGA   67 (521)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----hHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999994    33333334444444444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=87.08  E-value=0.19  Score=57.31  Aligned_cols=175  Identities=14%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 007555          382 GIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCAS-MGVAATFLSAYLVRRL  459 (598)
Q Consensus       382 ~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gav-gGLlGtl~~~~l~rrl  459 (598)
                      ..+|+...++.+.++|++.-..........++..+.+.++-|+.+ -+.+++.-..+.|+..+ ++.+|.++.+.+.||+
T Consensus       290 ~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~  369 (539)
T PF03137_consen  290 SIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKF  369 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEe
Confidence            456676777888999988764443333333335677778888874 58888887777776666 4467888888898888


Q ss_pred             hhhHHH--HHHHHHHHHHHHHHHHHHhh--------c--ccc---------------------------------cc--h
Q 007555          460 GILKAG--AAGLIFQASLLAMAVAVYWS--------G--SLS---------------------------------QQ--N  492 (598)
Q Consensus       460 g~~r~g--~~~l~~q~~~L~~~v~~~~~--------g--~~~---------------------------------~~--~  492 (598)
                      ++...+  .+.+....+.+......++.        |  .++                                 ..  .
T Consensus       370 kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~  449 (539)
T PF03137_consen  370 KLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCN  449 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCccccc
Confidence            754222  22222111111110011100        0  000                                 00  0


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH--HHHHHHhhhhccCc
Q 007555          493 PLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV--ESVMLGVAIIANDV  556 (598)
Q Consensus       493 ~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~--~ll~~~~~i~~~~~  556 (598)
                      .+..|+.+++...+..-+-.++...+.=+-||+|+|.-..|++..+..++  .+.+.+.|.+.+..
T Consensus       450 ~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  450 KLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            12333333222222222335677777889999999999999999888877  36666666665544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.77  E-value=4  Score=44.83  Aligned_cols=119  Identities=19%  Similarity=0.213  Sum_probs=76.7

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhh
Q 007555          427 RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRL  506 (598)
Q Consensus       427 lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~  506 (598)
                      .+-..+++|++.+.-++..++..-..|.+..|+|..--...++..    +.....+|..+.   ..+.++ + .=.+-++
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~v----mf~sTilFafg~---sy~~l~-v-AR~LQgv  171 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFV----MFLSTILFAFGN---SYPMLF-V-ARSLQGV  171 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHH----HHHHHHHHHHcc---hhHHHH-H-HHHHhhh
Confidence            455678999999999999999999999999999965434434321    222233443342   122222 2 2334455


Q ss_pred             hhhhhhhhhhhhhhccCCCc-cchhHHHHHHHHHHHHHHHHHHh-hhhcc
Q 007555          507 GHMSYDIVGAQILQTGIPSS-KANLIGTTEISVASLVESVMLGV-AIIAN  554 (598)
Q Consensus       507 Gl~~fdl~~~~l~Q~~VP~~-~rGRV~sv~~sl~~~~~ll~~~~-~i~~~  554 (598)
                      |-...|++...++-+..|+| +||+|+|+.-.-..+-.+++... |++.+
T Consensus       172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe  221 (464)
T KOG3764|consen  172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE  221 (464)
T ss_pred             hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh
Confidence            66677888888887777665 57999998776666555555444 44433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=86.60  E-value=11  Score=42.14  Aligned_cols=152  Identities=14%  Similarity=0.154  Sum_probs=86.0

Q ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchh-HHHHHHH
Q 007555          426 QRGLNPSIIGGFSGLCASMGVAATFLSAYL----VRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNP-LLFFLCL  500 (598)
Q Consensus       426 ~lg~s~~~iG~~~g~gavgGLlGtl~~~~l----~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~-~~~~~~~  500 (598)
                      ..|+++...|.+..+.=+-=.+.--+.|.+    .+|.|..|=  |.++......+.++..++....+.... .+.+. -
T Consensus        42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP--~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v-t  118 (467)
T COG2211          42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRP--WLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV-T  118 (467)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccH--HHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH-H
Confidence            479999888877766554443333333433    334444332  222222222233333343332111111 11111 1


Q ss_pred             HHHHhhhhhhhhhhhhhhhhccCCC-ccchhHHHHHHHHHHHHH-----HHHHHhhhhccCcchhHHHHHHHHHHHHHHH
Q 007555          501 IVLSRLGHMSYDIVGAQILQTGIPS-SKANLIGTTEISVASLVE-----SVMLGVAIIANDVSHFGFLATLSLLSVVGAA  574 (598)
Q Consensus       501 i~lsr~Gl~~fdl~~~~l~Q~~VP~-~~rGRV~sv~~sl~~~~~-----ll~~~~~i~~~~~~~f~~l~l~S~~~V~~a~  574 (598)
                      -++..++..+.|++..++.=+.+++ ++|-+.++..+..+++..     ..++.+..+++...++++.....+..+....
T Consensus       119 Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i  198 (467)
T COG2211         119 YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVI  198 (467)
T ss_pred             HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Confidence            1222345567799999999998855 899999999988888773     2234456777777788988777766666554


Q ss_pred             HHHHHH
Q 007555          575 WMFCHW  580 (598)
Q Consensus       575 ~l~~~~  580 (598)
                      .+++.+
T Consensus       199 ~~l~~~  204 (467)
T COG2211         199 LLLFCF  204 (467)
T ss_pred             HHHHHH
Confidence            544443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=86.44  E-value=11  Score=42.91  Aligned_cols=153  Identities=14%  Similarity=0.058  Sum_probs=92.1

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHH--
Q 007555          420 MTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVY-WSGSLSQQNPLLF--  496 (598)
Q Consensus       420 ~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~-~~g~~~~~~~~~~--  496 (598)
                      |.-++++.|-.+...|..-..+=+|.+..=+...++.+++|..+....++..    ...=...+ ...++   |.++-  
T Consensus       394 LfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~----~~~Rf~~~S~L~n~---W~vLPie  466 (618)
T KOG3762|consen  394 LFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLAC----NVGRFLYYSYLQNP---WMVLPIE  466 (618)
T ss_pred             HHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhH----HHHHHHHHHHhcCc---hheeeHH
Confidence            3335556788888999888888888899989999999999987765544321    11111100 01111   11111  


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH--HHHHHHhhhhccCcchhHHHHHHHHHHHHH-H
Q 007555          497 FLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV--ESVMLGVAIIANDVSHFGFLATLSLLSVVG-A  573 (598)
Q Consensus       497 ~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~--~ll~~~~~i~~~~~~~f~~l~l~S~~~V~~-a  573 (598)
                      ++-++...  -+|   .+..+++-...|++++-.+.++...+-.+.  .+++++.|.+...........+.+++.+.. +
T Consensus       467 ilqgit~a--liW---aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~  541 (618)
T KOG3762|consen  467 ILQGITHA--LIW---AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA  541 (618)
T ss_pred             HHHHHHHH--HHH---HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence            11122111  123   466778888899999998888877776665  367777777777766655555555544433 3


Q ss_pred             HHHHHHHhcCC
Q 007555          574 AWMFCHWLLNP  584 (598)
Q Consensus       574 ~~l~~~~l~~~  584 (598)
                      +-....+++++
T Consensus       542 ~~~~iq~~l~~  552 (618)
T KOG3762|consen  542 LFISIQLLLKR  552 (618)
T ss_pred             HHHHhhhhhcc
Confidence            33334554444

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=85.81  E-value=58  Score=35.51  Aligned_cols=244  Identities=14%  Similarity=0.059  Sum_probs=113.2

Q ss_pred             eeeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH---HHHHHhhccccc
Q 007555          278 AVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIIL---TWFTNKISSGVL  354 (598)
Q Consensus       278 vp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~---~~li~rv~~~~l  354 (598)
                      +=..|++   ++..++-+..|..-...+.+|-.++=++++.-.. ....    +|..|+....+.   .+.+.+..+...
T Consensus       119 IYs~Vd~---~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~-sy~~----LN~ISL~~~~ia~~~A~fLP~v~rSl~  190 (433)
T KOG3810|consen  119 IYSKVDP---EMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETL-SYTT----LNYISLAEVTIAVLLALFLPRVKRSLY  190 (433)
T ss_pred             eeeecCH---HHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhccc-chhh----hchhhHHHHHHHHHHHhhCCCCchhhh
Confidence            3335553   5999999999999999999999999999885432 1112    222332222111   111111100000


Q ss_pred             ccccccccccCCCCCCCCC--CCccchhhhHHHHHHHHHHHhcCCch-HHHHHHHHH---HHHhhhhhhHHHHHHHHhc-
Q 007555          355 DRAKCSQSCCRTSNEGPVP--DADNIVDVGIEAIKLGWKEYMQQPVL-PASLAYVLL---CLNVVLTPGSLMTAFLTQR-  427 (598)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~eG~~~~~~~pvl-l~~l~~~lL---~~~vll~f~~l~~~yl~~l-  427 (598)
                      .+.++.+....+. |+..+  +..+..+..+..+.+.++..+++|.+ ..++-.++-   |+-| ..+  .-+ .-++. 
T Consensus       191 f~~~~~~~~v~~~-e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV-~nY--~Q~-LW~~~~  265 (433)
T KOG3810|consen  191 FHRLEDKISVGDL-EEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQV-TNY--TQI-LWKEVA  265 (433)
T ss_pred             hhcccccceeccc-hhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHH-HHH--HHH-HHHhhC
Confidence            0011111000000 00000  00111223455555666666777754 446554432   2222 011  111 11121 


Q ss_pred             -CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhh
Q 007555          428 -GLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRL  506 (598)
Q Consensus       428 -g~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~  506 (598)
                       .-....=|...++.-+.|.++++.++.+.-+....+-.+.++.    -+..+..+++.... ..  +++.-.+-++.| 
T Consensus       266 ~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~----s~~~agllf~m~~t-~~--Iw~~Ya~yvlfr-  337 (433)
T KOG3810|consen  266 PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVG----SAVQAGLLFIMAQT-QH--IWVCYAGYVLFR-  337 (433)
T ss_pred             CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHH----HHHhhhhhhhhhcc-cc--eehhhhhHHHHH-
Confidence             1122245788888888888899988887544333222222211    11222233333211 11  111111222233 


Q ss_pred             hhhhhhhh-hhhhhhccCCCccchhHHHHHHHHHHHH
Q 007555          507 GHMSYDIV-GAQILQTGIPSSKANLIGTTEISVASLV  542 (598)
Q Consensus       507 Gl~~fdl~-~~~l~Q~~VP~~~rGRV~sv~~sl~~~~  542 (598)
                      +...+-++ .+..+-+...+|.-|-|||+..-++-+.
T Consensus       338 ~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~l  374 (433)
T KOG3810|consen  338 VIYQLTITIATFQIARNLSSELFGLVFGINTFVALIL  374 (433)
T ss_pred             hhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHH
Confidence            12222222 2344557778899999999988777766

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=83.86  E-value=63  Score=35.04  Aligned_cols=149  Identities=16%  Similarity=0.015  Sum_probs=74.6

Q ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHH---HHHHHH
Q 007555          426 QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLF---FLCLIV  502 (598)
Q Consensus       426 ~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~---~~~~i~  502 (598)
                      +.|++..+++.+..+|-+.+.+-+-..+.+..|+|..|.-+....   .....|+   +...  +....++   +++|+.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~ci---ly~~scl---~k~~--~~~~~L~~GRvlgGia  134 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCI---LYSLSCL---TKHS--SNYPVLLLGRVLGGIA  134 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH---HHHHHHH---HHhc--cccHHHHHHHHHHHHH
Confidence            569999999999988888777666666778999998665432211   1111221   1111  1112211   112222


Q ss_pred             HHhhhhhhh-hhhhhhhhhccCCCccchhHHHHHHHHHHHH-HHHHHHhh-hhccCcch-hHHHHHHHHHHHHHH-HHHH
Q 007555          503 LSRLGHMSY-DIVGAQILQTGIPSSKANLIGTTEISVASLV-ESVMLGVA-IIANDVSH-FGFLATLSLLSVVGA-AWMF  577 (598)
Q Consensus       503 lsr~Gl~~f-dl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~-~ll~~~~~-i~~~~~~~-f~~l~l~S~~~V~~a-~~l~  577 (598)
                      .+-+.- .| .=.+...-++..|+|.+++.++....+.+.. -+++-+.+ .+.+..+. ...+...++.....+ ....
T Consensus       135 TSLLfS-~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  135 TSLLFS-AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             HHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence            221111 11 1123344677899999999998666443333 22222221 22222221 233444444444443 3444


Q ss_pred             HHHhcC
Q 007555          578 CHWLLN  583 (598)
Q Consensus       578 ~~~l~~  583 (598)
                      ..|--|
T Consensus       214 ~~W~EN  219 (354)
T PF05631_consen  214 KTWPEN  219 (354)
T ss_pred             hccccc
Confidence            566444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=83.74  E-value=0.028  Score=61.20  Aligned_cols=119  Identities=11%  Similarity=0.036  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhh
Q 007555          431 PSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMS  510 (598)
Q Consensus       431 ~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~  510 (598)
                      +...+...+...+|.++|+++++.+.+|+|..+....+....    ..+.......+ .. .....+..+-++.++|.-.
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~----~i~~~~~~~~~-~~-~~~~~~~~~R~~~G~~~g~  118 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM----IIGSILIAFAP-SY-NNFWMLLIGRFLIGFGIGG  118 (451)
T ss_pred             HHHHHHHHHHHHhhhccccccccccccccccccccccccccc----ccccccccccc-cc-ccccccccccccccccccc
Confidence            346788889999999999999999999999876655432211    11111111010 00 0122222222223333334


Q ss_pred             hhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHhhhhccC
Q 007555          511 YDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIAND  555 (598)
Q Consensus       511 fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~~i~~~~  555 (598)
                      .......++.|.+|+++||+..+........-.+++.+++.....
T Consensus       119 ~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~  163 (451)
T PF00083_consen  119 AYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY  163 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456778899999999999999888876654444455555443333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=83.62  E-value=45  Score=39.15  Aligned_cols=50  Identities=16%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             hHHHHHHHHh-cCCChh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007555          417 GSLMTAFLTQ-RGLNPS----IIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGL  469 (598)
Q Consensus       417 ~~l~~~yl~~-lg~s~~----~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l  469 (598)
                      .++++.|+.+ +|+++.    .++.+.+..-+.+++|++++-   +++|..++..++.
T Consensus         7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD---~~lG~~~tIl~~~   61 (654)
T TIGR00926         7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIAD---GWLGKFKTILYLS   61 (654)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHH
Confidence            4556666654 677655    466777777888888888876   4566666655443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=83.28  E-value=65  Score=35.54  Aligned_cols=82  Identities=10%  Similarity=0.025  Sum_probs=52.0

Q ss_pred             HHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccCcchhHHHHH-HHHHHHHHHHHHHHHH
Q 007555          503 LSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIANDVSHFGFLAT-LSLLSVVGAAWMFCHW  580 (598)
Q Consensus       503 lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~~~~f~~l~l-~S~~~V~~a~~l~~~~  580 (598)
                      +.++|+-.-..+...+.=+.+|||+|+|+-++.-++-..-. ..+...+.+.++.++-...-+ -.+..+.....+...|
T Consensus        98 l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~w  177 (403)
T PF03209_consen   98 LYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALW  177 (403)
T ss_pred             HHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445545566777899999999999999988776654443 344555767777666665533 3444444455555666


Q ss_pred             hcCC
Q 007555          581 LLNP  584 (598)
Q Consensus       581 l~~~  584 (598)
                      -..+
T Consensus       178 g~E~  181 (403)
T PF03209_consen  178 GQEP  181 (403)
T ss_pred             hccc
Confidence            4433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=83.09  E-value=11  Score=41.39  Aligned_cols=139  Identities=11%  Similarity=0.030  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHH-------HHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCC--chHHHHHHHHHHHHHHHHH
Q 007555          160 NLVEQLWNFAWPSAIA-------LLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSP--RIPAYICLNTVQAAAQLLS  229 (598)
Q Consensus       160 ~~G~~i~~fAlpL~v~-------~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~--Rr~vmi~~d~~q~~~v~ls  229 (598)
                      .+-.-++.+-.+.|..       .-.+ |..+.|-+-....+-..++....+..+||..  -+-.....       +.+.
T Consensus       267 ~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~-------l~~~  339 (451)
T KOG2615|consen  267 GLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFS-------LLLI  339 (451)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHH-------HHHH
Confidence            3444455555554432       2234 5666665555555555555555555566554  22111111       1122


Q ss_pred             HHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhH
Q 007555          230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA  309 (598)
Q Consensus       230 ~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP  309 (598)
                      ++.++. .....   .  ...+++...+.+..+....+..+..+.+     ..++   ++--.+|+..+.+..+++.+||
T Consensus       340 vP~~ll-ls~~~---~--~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~-----~~~~---~qrG~~~Gi~~Sl~alaRaiGP  405 (451)
T KOG2615|consen  340 VPAFLL-LSLAR---T--PVVLYLGSTLKSFSTASVVTCLTSLVHK-----YGPQ---SQRGTLNGIFRSLGALARAIGP  405 (451)
T ss_pred             HHHHHH-Hhccc---c--chhhhHHHHHHHHHHHHhhHHHHHHHHh-----cCCc---ccchHHHHHHHHHHHHHHHhhh
Confidence            232222 12111   0  1245555555555555555555544433     3333   3778999999999999999999


Q ss_pred             HHHHHHHhhh
Q 007555          310 SLFGILLSKY  319 (598)
Q Consensus       310 ~lgGlL~s~~  319 (598)
                      +++|.++.+.
T Consensus       406 lv~g~i~~Ws  415 (451)
T KOG2615|consen  406 LVSGVIFSWS  415 (451)
T ss_pred             hhhheeEEEe
Confidence            9999998864

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=81.21  E-value=90  Score=35.38  Aligned_cols=83  Identities=20%  Similarity=0.222  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007555          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQRGLNPSI----IGGFSGLCASMGVAATFLSAYLVRRL  459 (598)
Q Consensus       384 ~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~lg~s~~~----iG~~~g~gavgGLlGtl~~~~l~rrl  459 (598)
                      -.++||+++..++|.++....+.+.|....-..+...-..++++--++..    .|-+....++..++-.++.+++.||.
T Consensus       267 ~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~  346 (491)
T PF03219_consen  267 MSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRF  346 (491)
T ss_pred             ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35789999999999998866666655332122333333344443333333    34444444444444447788888998


Q ss_pred             hhhHHHH
Q 007555          460 GILKAGA  466 (598)
Q Consensus       460 g~~r~g~  466 (598)
                      |...+..
T Consensus       347 GW~~~Al  353 (491)
T PF03219_consen  347 GWRTAAL  353 (491)
T ss_pred             hHHHHHH
Confidence            8654443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=80.64  E-value=9.5  Score=41.76  Aligned_cols=93  Identities=12%  Similarity=-0.020  Sum_probs=49.9

Q ss_pred             ccccceeeccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccce
Q 007555          199 GPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWA  278 (598)
Q Consensus       199 gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwv  278 (598)
                      .++.|+++||.+||+.|-.+-++-.+.        .+++..-.+ .       ++..+++-..+.+.+.+.|++.  .|.
T Consensus       398 lLIt~~iverlGRKkTMal~l~~f~if--------lfll~~c~~-r-------n~~tvllf~arafisg~fqvaY--vYt  459 (528)
T KOG0253|consen  398 LLITGVIVERLGRKKTMALSLILFGIF--------LFLLTTCKT-R-------NAYTVLLFTARAFISGAFQVAY--VYT  459 (528)
T ss_pred             hhHHHHHHHHhcchhHHHHHHHHHHHH--------HHHHHHhcC-c-------chhHHHHHHHHHHHhchheEEE--Eec
Confidence            346799999999999998776532211        111111110 1       1111222233444455555543  366


Q ss_pred             eeecCCCchhHHHHHHHHHHHHHHHHHHhhHHHH
Q 007555          279 VLLAGINRPIALAKANAVLNRIDLLCEIAGASLF  312 (598)
Q Consensus       279 p~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~lg  312 (598)
                      |.+-|..   --+.+-+.-....-+..|+.|.++
T Consensus       460 PEVyPTa---vRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  460 PEVYPTA---VRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             Ccccchh---hhhcchhhhhhHHhhhhhhhhHHH
Confidence            7776642   333344444455557788888888

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	598
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 83/561 (14%), Positives = 150/561 (26%), Gaps = 187/561 (33%)

Query: 80  DMSTNEMECPVSVVQLNSEMLQINSEMLQMDSLTLLTEGTFVDSLLTTIPVLSEEEQNAL 139
           D  T E +          ++L +  +    +           D       +LS+EE + +
Sbjct: 8   DFETGEHQ------YQYKDILSVFEDAFVDNF-------DCKDVQDMPKSILSKEEIDHI 54

Query: 140 AATPAHPEGLYALYACCLA--GNLVEQLW------NFAW-PSAIA--LLHPSLLPVAVMG 188
             +     G   L+   L+    +V++        N+ +  S I      PS++    + 
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 189 FFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLL 248
              +  L     +  K   +  R+  Y+ L   QA  +L  A  ++             +
Sbjct: 115 QRDR--LYNDNQVFAKY--NVSRLQPYLKLR--QALLELRPAKNVL-------------I 155

Query: 249 HPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAK---ANAVLNRIDLLCE 305
                            GV  G           +G        K   A  V     + C+
Sbjct: 156 D----------------GVL-G-----------SG--------KTWVALDVCLSYKVQCK 179

Query: 306 IAGASLFGILLSKY-EPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCC 364
           +    +F + L     P T L+     ++  L                        Q   
Sbjct: 180 MDFK-IFWLNLKNCNSPETVLE-----MLQKL----------------------LYQI-- 209

Query: 365 RTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCL-NVVLTPGSLMTAF 423
              N     D  + + + I +I+   +  ++           LL L NV           
Sbjct: 210 -DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC----LLVLLNV----------- 253

Query: 424 LTQRGLNPSIIGGFSGLC------ASMGVAATFLSAYLVRRLGILKAGAAGLIFQAS--L 475
                 N      F+  C          V   FLSA     +  L   +  L       L
Sbjct: 254 -----QNAKAWNAFNLSCKILLTTRFKQV-TDFLSAATTTHI-SLDHHSMTLTPDEVKSL 306

Query: 476 LAMAVAVYWSGSLSQQ----NPLLFFLCLIVLS-RLGHMSYDIVGAQILQTGIPSSKANL 530
           L   +       L ++    NP    L +I  S R G  ++D                 +
Sbjct: 307 LLKYLDCR-PQDLPREVLTTNPRR--LSIIAESIRDGLATWD----NWKHVNC-DKLTTI 358

Query: 531 IGTTEISVASLVESVM----LGVAIIANDVSHFGFLATLSLLSVVGAAWMFCHWLLNPTD 586
           I   E S+  L  +        +++               LLS++        W      
Sbjct: 359 I---ESSLNVLEPAEYRKMFDRLSVFPPSA-----HIPTILLSLI--------WFDVIKS 402

Query: 587 E---------QRSLFSFDPQS 598
           +         + SL    P+ 
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKE 423

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	598
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.84
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.77
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.71
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.69
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.44
2xut_A	524	Proton/peptide symporter family protein; transport	99.42
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.87
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.31
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.07
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.03
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.01
2xut_A	524	Proton/peptide symporter family protein; transport	97.91
2cfq_A	417	Lactose permease; transport, transport mechanism,	96.98
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.75

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.84  E-value=1.3e-18  Score=184.88  Aligned_cols=377  Identities=11%  Similarity=-0.003  Sum_probs=229.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHH
Q 007555          146 PEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA  225 (598)
Q Consensus       146 ~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~  225 (598)
                      .+.+..++.+.++..++..++...+|.+..+. -|....++...+..++.++.+|+.|.+.||++||++++.+.++..+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~  105 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV  105 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence            45677788899999999999999999998877 88888999999999999999999999999999999999887654333


Q ss_pred             HHHHHHHHHHHhh-hccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHH
Q 007555          226 QLLSAAMIIHAHT-VIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLC  304 (598)
Q Consensus       226 v~ls~~~l~~~~~-~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~  304 (598)
                      .+    +..+... ..    +  .+.+++.-++.|.......++....+ .|    ..++   ++..++++..+....+.
T Consensus       106 ~~----~~~~~~~~~~----~--~~~l~~~~~l~G~~~~~~~~~~~~~i-~~----~~~~---~~r~~~~~~~~~~~~~g  167 (451)
T 1pw4_A          106 ML----FMGFVPWATS----S--IAVMFVLLFLCGWFQGMGWPPCGRTM-VH----WWSQ---KERGGIVSVWNCAHNVG  167 (451)
T ss_dssp             HH----HHHHCHHHHS----S--SSHHHHHHHHHHHHHHHTHHHHHHHH-HT----TCTT---THHHHHHHHHHHHHHHH
T ss_pred             HH----HHHhhhhccc----c--HHHHHHHHHHHHHHhhhccchHHHHH-HH----HCCc---hhhhHHHHHHHHHHHHH
Confidence            11    1111000 11    1  13345555566666666666655433 34    4443   37899999999999999


Q ss_pred             HHhhHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc-cccCCCCCCCCCCCccchhhh
Q 007555          305 EIAGASLFGILLSKYE-PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQ-SCCRTSNEGPVPDADNIVDVG  382 (598)
Q Consensus       305 ~i~GP~lgGlL~s~~~-~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  382 (598)
                      .++||.++|.++...+ ....+.+.....+...   ++   ....+ ++.+++.+..+ ++.++.++.+.++..+ .+..
T Consensus       168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~---~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  239 (451)
T 1pw4_A          168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA---LF---AFAMM-RDTPQSCGLPPIEEYKNDYPDDYNEKAE-QELT  239 (451)
T ss_dssp             HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHH---HH---HHHHC-CCSSTTTCCCSCTTTCCC--------------C
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---HH---HHhhc-cCCHhhcCCCChhhhcccccccchhhhh-cccc
Confidence            9999999999988777 5443333322221111   11   11111 11111100000 0000000000000000 0000


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 007555          383 IEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL--  459 (598)
Q Consensus       383 ~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrl--  459 (598)
                      .++.  .++..+++|.++.......++......+....+.|+.+ .|+++...|.+.+..++++++|.++.+++.+|+  
T Consensus       240 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~  317 (451)
T 1pw4_A          240 AKQI--FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR  317 (451)
T ss_dssp             CTHH--HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             cccc--hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            0111  14556778877654444333332223455566777776 799999999999999999999999999999998  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHH
Q 007555          460 GILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVA  539 (598)
Q Consensus       460 g~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~  539 (598)
                      |..+....+...   ....+...+....  . .....+.....+.+++..........+.++.+|++.||+++|+.++..
T Consensus       318 ~~~~~~~~~~~~---~~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  391 (451)
T 1pw4_A          318 GNRGATGVFFMT---LVTIATIVYWMNP--A-GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG  391 (451)
T ss_dssp             TCHHHHHHHHHH---HHHHHHHHTTSCC--T-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHH---HHHHHHHHHHHhc--c-cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence            766554433221   1112222221111  0 011112222333344444556677889999999999999999999999


Q ss_pred             HH-HH-HHHHHhhhhccCcc
Q 007555          540 SL-VE-SVMLGVAIIANDVS  557 (598)
Q Consensus       540 ~~-~~-ll~~~~~i~~~~~~  557 (598)
                      ++ .. +.+++.+.+.+..+
T Consensus       392 ~~~g~~~~~~~~g~l~~~~g  411 (451)
T 1pw4_A          392 YLGGSVAASAIVGYTVDFFG  411 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            88 64 55566677766544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.77  E-value=2e-15  Score=159.80  Aligned_cols=355  Identities=10%  Similarity=-0.018  Sum_probs=216.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHH
Q 007555          147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ  226 (598)
Q Consensus       147 r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v  226 (598)
                      +.+..+....++..+...+....+|.+.-+..-|....++...+..+..++.+|+.|.++||++||++++.+.++..+. 
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~-  104 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG-  104 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH-
Confidence            3456677777888888888888888865554339999999999999999999999999999999999998887654332 


Q ss_pred             HHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHH
Q 007555          227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI  306 (598)
Q Consensus       227 ~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i  306 (598)
                         ..+.... ...   .+  .+.+++..++.|.......++....+ .|    ..+++   +..++++..+....+..+
T Consensus       105 ---~~~~~~~-~~~---~~--~~~l~~~~~l~G~~~~~~~~~~~~~~-~~----~~~~~---~r~~~~~~~~~~~~~g~~  167 (438)
T 3o7q_A          105 ---AALFWPA-AEI---MN--YTLFLVGLFIIAAGLGCLETAANPFV-TV----LGPES---SGHFRLNLAQTFNSFGAI  167 (438)
T ss_dssp             ---HHHHHHH-HHT---TC--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----SSCST---THHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHhc-ccc---cc--HHHHHHHHHHHHhhHHHhhhhHHHHH-HH----HcCch---hHHHHHHHHHHHHHHHHH
Confidence               1111110 111   11  24455556667776666666554433 34    44443   678899999999999999


Q ss_pred             hhHHHHHHHH-hhhch-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 007555          307 AGASLFGILL-SKYEP-------------------------VTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCS  360 (598)
Q Consensus       307 ~GP~lgGlL~-s~~~~-------------------------~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~  360 (598)
                      +||.+++.+. ...+.                         ........   ........    .......|+.  +++.
T Consensus       168 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~----~~~~~~~p~~--~~~~  238 (438)
T 3o7q_A          168 IAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIV---AIVLLVAL----LIMLTKFPAL--QSDN  238 (438)
T ss_dssp             HHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHCCCCCC--TTTC
T ss_pred             HHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHH---HHHHHHHH----HHHHHcCCcc--cccc
Confidence            9999999998 54432                         11111111   11111111    1111111211  1100


Q ss_pred             ccccCCCCCCCCCCCccchhhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHH-HHhc-CCChhHHHHHH
Q 007555          361 QSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAF-LTQR-GLNPSIIGGFS  438 (598)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~y-l~~l-g~s~~~iG~~~  438 (598)
                      +        ++ ++.        ++.++.++..+++|.++..+....+++.....+...++.| +.+. |+++...|...
T Consensus       239 ~--------~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  301 (438)
T 3o7q_A          239 H--------SD-AKQ--------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYL  301 (438)
T ss_dssp             C--------CC-SST--------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred             c--------cc-ccc--------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHH
Confidence            0        00 000        1234567778899987765554444433323445567778 7764 99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 007555          439 GLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQI  518 (598)
Q Consensus       439 g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l  518 (598)
                      +...+++++|.++.+++.+|+|..+....+.....    .+........  .....+ .+   .+..++.........++
T Consensus       302 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~-~~---~~~g~~~~~~~~~~~~~  371 (438)
T 3o7q_A          302 TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM----ALCLISAFAG--GHVGLI-AL---TLCSAFMSIQYPTIFSL  371 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH----HHHHHHHHCC--HHHHHH-HH---HHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----HHHHHHHHcC--CcHHHH-HH---HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998776654433221    1111111111  111111 11   11222333344566777


Q ss_pred             hhccCCCccchhHHHHHHHHHHHH-HHHHHHhhhhccCcc
Q 007555          519 LQTGIPSSKANLIGTTEISVASLV-ESVMLGVAIIANDVS  557 (598)
Q Consensus       519 ~Q~~VP~~~rGRV~sv~~sl~~~~-~ll~~~~~i~~~~~~  557 (598)
                      .++..|++ +++..+... .+.+. .+.+++.+.+.+...
T Consensus       372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            78889877 888888776 44443 355666666655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.71  E-value=1.1e-14  Score=157.29  Aligned_cols=375  Identities=14%  Similarity=0.050  Sum_probs=207.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cC-ChhHHHHHHHHHHHHHHHcccccceeecc-CCchHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALL-----HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDH-SPRIPAYIC  217 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~l-----t~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR-~~Rr~vmi~  217 (598)
                      +++.++.++...+...++-.....-++.|+...     .+ |....+....+..+...+.+++.|.++|| ++||++++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~   90 (491)
T 4aps_A           11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW   90 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            557889999999999999999988999999887     78 99999999999999999999999999999 899999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHH
Q 007555          218 LNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVL  297 (598)
Q Consensus       218 ~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l  297 (598)
                      +.++..+.      .+......     +  .+.+++..++.|.......++....+ .|    +.+++ +....++.+..
T Consensus        91 ~~~~~~~~------~~~~~~~~-----~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~~-~~~r~~~~~~~  151 (491)
T 4aps_A           91 GGVLIMLG------HIVLALPF-----G--ASALFGSIILIIIGTGFLKPNVSTLV-GT----LYDEH-DRRRDAGFSIF  151 (491)
T ss_dssp             HHHHHHHH------HHHHHSCC-----S--TTHHHHHHHHHHHHHHHHHHHHHHHH-HH----HSSSC-TTHHHHHHHHH
T ss_pred             HHHHHHHH------HHHHHHhh-----h--HHHHHHHHHHHHHHHHhccchHHHHH-HH----HcCcc-cccceeeehHH
Confidence            76543222      11121111     1  13445555556665555555554433 34    33433 12467788888


Q ss_pred             HHHHHHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCcc
Q 007555          298 NRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADN  377 (598)
Q Consensus       298 ~~id~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~  377 (598)
                      +....+..++||.++|.+....|......+.....+...+..    +...+-..+  ++.++++        +  +..++
T Consensus       152 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~--------~--~~~~~  215 (491)
T 4aps_A          152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY----YFGGKKTLD--PHYLRPT--------D--PLAPE  215 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----HHHHHTTCC--SCCSCCS--------C--CCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHhCccccc--ccccCCC--------C--ccccc
Confidence            999999999999999999987775543333322222211111    111111100  0000000        0  00000


Q ss_pred             chhhhHHH----------------------------------HHH-------HHHH-----HhcCC--chHHHHHHHHHH
Q 007555          378 IVDVGIEA----------------------------------IKL-------GWKE-----YMQQP--VLPASLAYVLLC  409 (598)
Q Consensus       378 ~~~~~~~~----------------------------------i~e-------G~~~-----~~~~p--vll~~l~~~lL~  409 (598)
                      ..++..+.                                  +..       .|+.     ..+.+  .+........++
T Consensus       216 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (491)
T 4aps_A          216 EVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLF  295 (491)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            00000000                                  000       0000     01111  122222222222


Q ss_pred             HHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHHH-HHHHHHHH
Q 007555          410 LNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGA-----AGLIFQAS-LLAMAVAV  482 (598)
Q Consensus       410 ~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~-----~~l~~q~~-~L~~~v~~  482 (598)
                      +.........++.|..+ .+.+....|...+..+++.++++.+.+++.+|+|..+...     .+...... ++.++...
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (491)
T 4aps_A          296 WAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPG  375 (491)
T ss_dssp             HHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             HHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            22212334455667665 5666566777778888888888888888888887532211     11111100 00011110


Q ss_pred             HhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH-HHHHHhhhhccC
Q 007555          483 YWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE-SVMLGVAIIAND  555 (598)
Q Consensus       483 ~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~-ll~~~~~i~~~~  555 (598)
                      ...+..... ....+....++..+|...+......+.++..|+++||++.|+.++...+.. +.+.+.+.+.+.
T Consensus       376 ~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~  448 (491)
T 4aps_A          376 ALYGTSGKV-SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK  448 (491)
T ss_dssp             HHCCCCTTC-CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred             HhcCCCCCc-cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            010100000 111111223333344445566778899999999999999999998888775 444444555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.69  E-value=9.3e-17  Score=167.38  Aligned_cols=334  Identities=14%  Similarity=0.056  Sum_probs=201.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHH
Q 007555          150 YALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS  229 (598)
Q Consensus       150 ~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls  229 (598)
                      ..++.+.+++.++..++...+|.+..+..-|....+....+..++.++.+|+.|.+.||++||++++.+.++..+.    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~----   78 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA----   78 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH----
Confidence            4578899999999999999999876655449999999999999999999999999999999999998877654333    


Q ss_pred             HHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhH
Q 007555          230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA  309 (598)
Q Consensus       230 ~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP  309 (598)
                      ..+..+.  .     +  .+.+++..++.|.......++....+ .|    ..+++   +..++++..+....+..++||
T Consensus        79 ~~~~~~~--~-----~--~~~l~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~~---~~~~~~~~~~~~~~~g~~~~~  141 (375)
T 2gfp_A           79 TLVAVTT--S-----S--LTVLIAASAMQGMGTGVGGVMARTLP-RD----LYERT---QLRHANSLLNMGILVSPLLAP  141 (375)
T ss_dssp             HHHHHHH--H-----H--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHTS---SCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--c-----c--HHHHHHHHHHHHHHHHhhhhhHHHHH-HH----HCCHH---HHHHHHHHHHHHHHHHHHhhH
Confidence            1111111  1     1  23445555566666666666554433 33    33332   567899999999999999999


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHH
Q 007555          310 SLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLG  389 (598)
Q Consensus       310 ~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG  389 (598)
                      .++|.+....+......+....   ..+..     .......|+.   ++.++       ++ ++           .+++
T Consensus       142 ~~~~~l~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~---~~~~~-------~~-~~-----------~~~~  191 (375)
T 2gfp_A          142 LIGGLLDTMWNWRACYLFLLVL---CAGVT-----FSMARWMPET---RPVDA-------PR-TR-----------LLTS  191 (375)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHH---HHHHH-----CCCCCSSCCC---STTTC-------CC-CC-----------TTTC
T ss_pred             HHHHHHHHhccHHHHHHHHHHH---HHHHH-----HHHHHHCccc---CCCCc-------cc-cc-----------HHHH
Confidence            9999998766543322221111   11100     1011111211   11000       00 00           0112


Q ss_pred             HHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007555          390 WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG  468 (598)
Q Consensus       390 ~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~  468 (598)
                      ++..+++|.++.......+++.....+....+.|+.+ .|+++...|.+.+..++++++|.++.+++.||.+. +. ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~-~~~  269 (375)
T 2gfp_A          192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-LM-WQS  269 (375)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-HH-HHH
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHH
Confidence            3334555655543333333222212333344446655 78899999999999999999999999999999876 22 111


Q ss_pred             HHHHHHHHHHHHH--HHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          469 LIFQASLLAMAVA--VYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       469 l~~q~~~L~~~v~--~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      ...   +...+..  .+....   ......+....++..++.........++.|+.+| ++||+++|+.++..+...
T Consensus       270 ~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~  339 (375)
T 2gfp_A          270 VIC---CLLAGLLMWIPDWFG---VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGS  339 (375)
T ss_dssp             HHH---HHHTSSSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHH---HHHHHHHHHHHhhhc---cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHH
Confidence            110   0011111  000000   0011112222233334444567788899999999 899999999998877664

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.44  E-value=1.1e-12  Score=140.06  Aligned_cols=361  Identities=11%  Similarity=0.014  Sum_probs=181.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      ++|+|+.+....++...+..+...-+|.|+.+..+ |....+....+..+..++.+|+.|.+.||++|||+++..-++-.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~   84 (417)
T 2cfq_A            5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTT
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            67889988888888887877777778888877777 88889999988899999999999999999999998876543321


Q ss_pred             HHHHHHHHHHH--HHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHH
Q 007555          224 AAQLLSAAMII--HAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (598)
Q Consensus       224 ~~v~ls~~~l~--~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id  301 (598)
                      +.   ......  +......   .     .+....+.+....+...+....+ .+|++..     +++-..+.+..+...
T Consensus        85 ~~---~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~-----~~~~~~~~g~~~~~~  147 (417)
T 2cfq_A           85 VM---FAPFFIFIFGPLLQY---N-----ILVGSIVGGIYLGFCFNAGAPAV-EAFIEKV-----SRRSNFEFGRARMFG  147 (417)
T ss_dssp             SC---HHHHHHHTHHHHHHT---T-----CCHHHHGGGSSTTHHHHTTHHHH-HHHHHHH-----HHHHTCCHHHHSSST
T ss_pred             HH---HHHHHHHHHHHHHHH---H-----HHHHHHHHHHHHHHHHhhhHHHH-HHHHHHh-----hhhcccchHHHHHHH
Confidence            11   001100  0000000   0     00111111111111111111111 1122111     001112234444455


Q ss_pred             HHHHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhh
Q 007555          302 LLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDV  381 (598)
Q Consensus       302 ~~~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (598)
                      .+...+||.++|.+... +......+...   ..+. .    .......+|+.++ + .+++.++   ++  +.+   +.
T Consensus       148 ~~g~~~~~~l~~~l~~~-~~~~~f~~~~~---~~~~-~----~~~~~~~~~~~~~-~-~~~~~~~---~~--~~~---~~  208 (417)
T 2cfq_A          148 CVGWALGASIVGIMFTI-NNQFVFWLGSG---CALI-L----AVLLFFAKTDAPS-S-ATVANAV---GA--NHS---AF  208 (417)
T ss_dssp             TTHHHHHHHHHHHHHHH-CSHHHHTTTTT---TTTT-H----HHHSCSSCCCCSC-S-SCSSSSS---SS--CCC---CC
T ss_pred             HHHHHHHHHHHHHHHHh-chhHHHHHHHH---HHHH-H----HHHHHHcCccccc-c-ccccccc---cc--ccc---cc
Confidence            66778999999999873 32221111110   0010 0    0111111121100 0 0000000   00  000   01


Q ss_pred             hHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cC---CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007555          382 GIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RG---LNPSIIGGFSGLCASMGVAATFLSAYLVR  457 (598)
Q Consensus       382 ~~~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg---~s~~~iG~~~g~gavgGLlGtl~~~~l~r  457 (598)
                      ..+    .++..+++|.++..+............+...++.|+.+ .+   .+...+|...+..++++++|.++.+++.+
T Consensus       209 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d  284 (417)
T 2cfq_A          209 SLK----LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN  284 (417)
T ss_dssp             CHH----HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHH----HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112    34456677766543333222211111232334556543 22   33567788889999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHH-H
Q 007555          458 RLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTE-I  536 (598)
Q Consensus       458 rlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~-~  536 (598)
                      |+|..+....+....    ..+...+....  +....+ .  ...+..++...+......+..|..|++.||+..+.. +
T Consensus       285 r~g~~~~l~~~~~~~----~~~~~~~~~~~--~~~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  355 (417)
T 2cfq_A          285 RIGGKNALLLAGTIM----SVRIIGSSFAT--SALEVV-I--LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC  355 (417)
T ss_dssp             HHCHHHHHHHHHHHH----HHHHHHHTTCC--SHHHHH-H--HTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred             HhcHHHHHHHHHHHH----HHHHHHHHHhc--cHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            999877654433211    11111111111  111111 1  111111222234445567899999999999998884 5


Q ss_pred             HHHHHHH-HHHHHhhhhcc
Q 007555          537 SVASLVE-SVMLGVAIIAN  554 (598)
Q Consensus       537 sl~~~~~-ll~~~~~i~~~  554 (598)
                      +...+.. ..+.+.|.+.+
T Consensus       356 ~~~~lg~~~gp~l~G~l~~  374 (417)
T 2cfq_A          356 FFKQLAMIFMSVLAGNMYE  374 (417)
T ss_dssp             TTHHHHHHHHTHHHHTHHH
T ss_pred             HHHhHHHHHhhhhHHHHHH
Confidence            5554442 45566665554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.42  E-value=1.3e-11  Score=134.45  Aligned_cols=162  Identities=10%  Similarity=-0.068  Sum_probs=112.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHHcccccceeeccC-CchHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-------SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPAYI  216 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-------S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~-~Rr~vmi  216 (598)
                      +++.++.++...++..++.......+|.|+....+       |....+....+..+..++.++++|.++||+ +||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            56789999999999999999999999999877555       788889999999999999999999999999 9999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHH
Q 007555          217 CLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV  296 (598)
Q Consensus       217 ~~d~~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~  296 (598)
                      .+.++..+.    ..  ......    .+  .+.+++..++.|.......++....+ .|    ..++++........+.
T Consensus        90 ~~~~~~~~~----~~--~~~~~~----~~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~~~r~~~~~~~~~  152 (524)
T 2xut_A           90 WLSLIYCVG----HA--FLAIFE----HS--VQGFYTGLFLIALGSGGIKPLVSSFM-GD----QFDQSNKSLAQKAFDM  152 (524)
T ss_dssp             HHHHHHHHH----HH--HHHHTS----SC--HHHHHHHHHHHHHHHHTTHHHHHHHH-HH----TCSTTTTTHHHHHHHH
T ss_pred             HHHHHHHHH----HH--HHHHhc----cc--HHHHHHHHHHHHHhccccchhHHHHH-HH----HcCccchHHHHHHHHH
Confidence            776543221    11  111111    01  24455556666766666665554433 34    3343311123455555


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhhhchhH
Q 007555          297 LNRIDLLCEIAGASLFGILLSKYEPVT  323 (598)
Q Consensus       297 l~~id~~~~i~GP~lgGlL~s~~~~~~  323 (598)
                      ......+..++||.++|.+....|...
T Consensus       153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~  179 (524)
T 2xut_A          153 FYFTINFGSFFASLSMPLLLKNFGAAV  179 (524)
T ss_dssp             HHHHHHHHHHHHHHTSTHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            888888999999999999988766543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.87  E-value=5.6e-06  Score=88.69  Aligned_cols=114  Identities=16%  Similarity=0.118  Sum_probs=67.8

Q ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHhhcccccchhHHHHHHHHHH
Q 007555          425 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLL-AMAVAVYWSGSLSQQNPLLFFLCLIVL  503 (598)
Q Consensus       425 ~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L-~~~v~~~~~g~~~~~~~~~~~~~~i~l  503 (598)
                      ...+.+...........++.++.+++++.++.+|+|..+....+......++ .++... ..... ..............
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~-~~~~~-~~~~~~~~~~~~~~  382 (491)
T 4gc0_A          305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF-YTQAP-GIVALLSMLFYVAA  382 (491)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH-HTTCC-HHHHHHHHHHHHHH
T ss_pred             HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH-hcccc-hHHHHHHHHHHHHH
Confidence            3567777777777777888899999999999999998776655433222211 111111 11111 01111111111111


Q ss_pred             HhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          504 SRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       504 sr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      .  + ..+......+..|..|.+.||...|+..+.+++..
T Consensus       383 ~--~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~  419 (491)
T 4gc0_A          383 F--A-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLAN  419 (491)
T ss_dssp             H--H-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHH
T ss_pred             H--H-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence            1  1 12233445678899999999999999998888773

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.31  E-value=7.5e-05  Score=78.33  Aligned_cols=135  Identities=13%  Similarity=0.023  Sum_probs=92.1

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Q 007555          417 GSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLF  496 (598)
Q Consensus       417 ~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~  496 (598)
                      ...++.+..+.|+++.++|++.++..++..++.+..+++.+|+|..+...++.........+........      ....
T Consensus        46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------~~~~  119 (438)
T 3o7q_A           46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM------NYTL  119 (438)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT------CHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc------cHHH
Confidence            3344555567899999999999999999999999999999999998876655432211111110001111      1222


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHH-HHhhhhc-cCcc
Q 007555          497 FLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVM-LGVAIIA-NDVS  557 (598)
Q Consensus       497 ~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~-~~~~i~~-~~~~  557 (598)
                      ++.+.++.++|...++.....++.+..|+++||+.++..++...+...++ .+.+.+. ....
T Consensus       120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            33334445556667788899999999999999999999998888876444 4445555 4433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.07  E-value=9.8e-05  Score=77.63  Aligned_cols=163  Identities=13%  Similarity=0.048  Sum_probs=111.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccC--CchHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS--PRIPAYICLNTV  221 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~--~Rr~vmi~~d~~  221 (598)
                      +++.++.+....++..++......-+|.|+.+..+ |....+.+.....+..++.+++.|.+.||+  +||+++...-++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  329 (451)
T 1pw4_A          250 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT  329 (451)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence            67889999999999999998888889999888777 998899988888999999999999999999  898877654332


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHH
Q 007555          222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID  301 (598)
Q Consensus       222 q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id  301 (598)
                      ...   +.  ++.+  ...+ ...  .+.+.+..++.|.......+.....+ .|    .+++   ++..++++......
T Consensus       330 ~~~---~~--~~~~--~~~~-~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~----~~~~---~~~g~~~~~~~~~~  391 (451)
T 1pw4_A          330 LVT---IA--TIVY--WMNP-AGN--PTVDMICMIVIGFLIYGPVMLIGLHA-LE----LAPK---KAAGTAAGFTGLFG  391 (451)
T ss_dssp             HHH---HH--HHHT--TSCC-TTC--HHHHHHHHHHHHHHHTHHHHHHHHHH-HH----TSCT---THHHHHHHHHHHHH
T ss_pred             HHH---HH--HHHH--HHhc-ccC--HHHHHHHHHHHHHHHhchHHHHHHHH-HH----Hhch---hhhhhHHHHHHHHH
Confidence            110   11  1111  1111 011  12233333444443222222221211 12    4554   37889999999999


Q ss_pred             HH-HHHhhHHHHHHHHhhhchhHHH
Q 007555          302 LL-CEIAGASLFGILLSKYEPVTCL  325 (598)
Q Consensus       302 ~~-~~i~GP~lgGlL~s~~~~~~~l  325 (598)
                      .+ +..+||.++|.++...|.....
T Consensus       392 ~~~g~~~~~~~~g~l~~~~g~~~~~  416 (451)
T 1pw4_A          392 YLGGSVAASAIVGYTVDFFGWDGGF  416 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            99 9999999999999987754433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.03  E-value=0.00025  Score=75.86  Aligned_cols=130  Identities=12%  Similarity=0.010  Sum_probs=85.6

Q ss_pred             hhHHHHHHHHh------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007555          416 PGSLMTAFLTQ------RGLNPSIIGGFSGLCASMGVAATFLSAYLVRR-LGILKAGAAGLIFQASLLAMAVAVYWSGSL  488 (598)
Q Consensus       416 f~~l~~~yl~~------lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rr-lg~~r~g~~~l~~q~~~L~~~v~~~~~g~~  488 (598)
                      ....++.|+.+      .|+++.+.|++.+...++..++.+..+++.+| +|..+...++....    ..+........ 
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~----~~~~~~~~~~~-  106 (491)
T 4aps_A           32 MRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI----MLGHIVLALPF-  106 (491)
T ss_dssp             HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----HHHHHHHHSCC-
T ss_pred             HHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH----HHHHHHHHHhh-
Confidence            44566677764      79999999999999999999999999999999 89888766554322    11211111111 


Q ss_pred             ccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCcc--chhHHHHHHHHHHHHH-HHHHHhhhhcc
Q 007555          489 SQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSK--ANLIGTTEISVASLVE-SVMLGVAIIAN  554 (598)
Q Consensus       489 ~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~--rGRV~sv~~sl~~~~~-ll~~~~~i~~~  554 (598)
                        ....  +..+.++.++|...+......++.+..|+++  ||+.++..++..++.. +.+.+.+.+.+
T Consensus       107 --~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  171 (491)
T 4aps_A          107 --GASA--LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE  171 (491)
T ss_dssp             --STTH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hHHH--HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence              1112  1122333344555667788899999999999  6667776666666654 34444455543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.01  E-value=4.8e-05  Score=78.48  Aligned_cols=128  Identities=5%  Similarity=-0.013  Sum_probs=87.7

Q ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Q 007555          416 PGSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLL  495 (598)
Q Consensus       416 f~~l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~  495 (598)
                      +...++.+..+.|.++.++|++.++..++..++....+++.+|+|..+...++.......   ........      ...
T Consensus        19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~---~~~~~~~~------~~~   89 (375)
T 2gfp_A           19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA---TLVAVTTS------SLT   89 (375)
T ss_dssp             HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH---HHHHHHHH------HHH
T ss_pred             HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH---HHHHHHhc------cHH
Confidence            444555566678999999999999999999999999999999999877655543322111   11111111      112


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHh-hhh
Q 007555          496 FFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGV-AII  552 (598)
Q Consensus       496 ~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~-~i~  552 (598)
                      .+..+.++.+++...+......+..+..|+++||+.++...........++... +.+
T Consensus        90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  147 (375)
T 2gfp_A           90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL  147 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            222233334445556778889999999999999999999998888776444444 444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.91  E-value=0.00042  Score=74.88  Aligned_cols=130  Identities=12%  Similarity=0.027  Sum_probs=83.0

Q ss_pred             hhHHHHHHHH-hcC------CChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007555          416 PGSLMTAFLT-QRG------LNPSIIGGFSGLCASMGVAATFLSAYLVRRL-GILKAGAAGLIFQASLLAMAVAVYWSGS  487 (598)
Q Consensus       416 f~~l~~~yl~-~lg------~s~~~iG~~~g~gavgGLlGtl~~~~l~rrl-g~~r~g~~~l~~q~~~L~~~v~~~~~g~  487 (598)
                      ....++.|+. +.|      +++.+.|++.++..++.+++.+..+++.+|+ |..+...++....    ..+........
T Consensus        31 ~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~----~~~~~~~~~~~  106 (524)
T 2xut_A           31 MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY----CVGHAFLAIFE  106 (524)
T ss_dssp             HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH----HHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH----HHHHHHHHHhc
Confidence            3455666776 478      9999999999999999999999999999999 9877765543321    11111111111


Q ss_pred             cccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHH---HHHHHHHHH-HHHHHhhhhc
Q 007555          488 LSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTT---EISVASLVE-SVMLGVAIIA  553 (598)
Q Consensus       488 ~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv---~~sl~~~~~-ll~~~~~i~~  553 (598)
                      .  .  ...+..+.++.++|...+.....+++.+.+|+++||+..+.   ..+..++.. +.+.+.+.+.
T Consensus       107 ~--~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  172 (524)
T 2xut_A          107 H--S--VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL  172 (524)
T ss_dssp             S--C--HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred             c--c--HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0  1  11122223334445556678889999999999999887766   555554443 3333334443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=96.98  E-value=0.0059  Score=64.33  Aligned_cols=156  Identities=10%  Similarity=-0.020  Sum_probs=81.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----hhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHPS----LLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNT  220 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~S----~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~  220 (598)
                      +++.++.++...+....+-..+...+|.|.....+.    ....+.......+..++..++.|.+.||++||++++..-+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~  297 (417)
T 2cfq_A          218 RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGT  297 (417)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence            566676666654444444444444578777655442    2233455555555667778899999999999998765432


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHH-HHH
Q 007555          221 VQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV-LNR  299 (598)
Q Consensus       221 ~q~~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~-l~~  299 (598)
                      +..    +  ..+..  ...   .+  .+.+++..++.+.....+......     +++...++   +....+.+. ...
T Consensus       298 ~~~----~--~~~~~--~~~---~~--~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~p~---~~~g~~~g~~~~~  356 (417)
T 2cfq_A          298 IMS----V--RIIGS--SFA---TS--ALEVVILKTLHMFEVPFLLVGCFK-----YITSQFEV---RFSATIYLVCFCF  356 (417)
T ss_dssp             HHH----H--HHHHH--TTC---CS--HHHHHHHTTHHHHHHHHHHHHHHH-----HHHHHSCH---HHHHHHHHHHHTT
T ss_pred             HHH----H--HHHHH--HHh---cc--HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCH---HHHHHHHHHHHHH
Confidence            211    1  11111  111   11  122222222222221122211111     11224442   234455555 366


Q ss_pred             HHHHHHHhhHHHHHHHHhhhch
Q 007555          300 IDLLCEIAGASLFGILLSKYEP  321 (598)
Q Consensus       300 id~~~~i~GP~lgGlL~s~~~~  321 (598)
                      ...+..++||.++|.+++..|.
T Consensus       357 ~~~lg~~~gp~l~G~l~~~~g~  378 (417)
T 2cfq_A          357 FKQLAMIFMSVLAGNMYESIGF  378 (417)
T ss_dssp             THHHHHHHHTHHHHTHHHHSHH
T ss_pred             HHhHHHHHhhhhHHHHHHhcCc
Confidence            6778899999999999886663

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.75  E-value=0.035  Score=58.88  Aligned_cols=119  Identities=10%  Similarity=0.062  Sum_probs=75.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc------------cccchhHHHH
Q 007555          430 NPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGS------------LSQQNPLLFF  497 (598)
Q Consensus       430 s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L~~~v~~~~~g~------------~~~~~~~~~~  497 (598)
                      ++...|++.++..+|.++|+++++++.+|+|..+...++.....+   .++...+...            .........+
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i---~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l  129 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI---SGVGSAWPELGFTSINPDNTVPVYLAGYVPEF  129 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HHHHHHHHhhhhhhhcchhHHHHHHhhhHHHH
Confidence            345788999999999999999999999999998877655432211   1111111000            0000112233


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHHHhhh
Q 007555          498 LCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAI  551 (598)
Q Consensus       498 ~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~ll~~~~~i  551 (598)
                      +.+=++.++|.-........++.|..|+++||+..+..........+...+.+.
T Consensus       130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~  183 (491)
T 4gc0_A          130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY  183 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcch
Confidence            333333444444556677889999999999999999888776666555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	598
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.79
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.78
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.28
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.71

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=4.6e-17  Score=169.01  Aligned_cols=394  Identities=13%  Similarity=0.027  Sum_probs=212.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHHHHHHHHH
Q 007555          152 LYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSA  230 (598)
Q Consensus       152 L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~~~v~ls~  230 (598)
                      ++.+.++..+....+.++.|.. .+ .+ |..+.++...+..+...+.+++.|.++||++||++++.+.++..+..++. 
T Consensus        30 ~~~~~~~~~~~~~~~~~~~p~~-~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~-  106 (447)
T d1pw4a_          30 IFFGYAAYYLVRKNFALAMPYL-VE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM-  106 (447)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHT-TS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhc-
Confidence            4444444444444566666743 33 46 99999999999999999999999999999999999988876544332211 


Q ss_pred             HHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHHHHHhhHH
Q 007555          231 AMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGAS  310 (598)
Q Consensus       231 ~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~~~i~GP~  310 (598)
                         .+.....   .+  .+.+++.-++.|.......++....+ .||    .++   ++..++++..+....+..++||.
T Consensus       107 ---~~~~~~~---~~--~~~~~~~~~~~g~~~~~~~~~~~~~i-~~~----~~~---~~r~~~~~~~~~~~~~g~~i~~~  170 (447)
T d1pw4a_         107 ---GFVPWAT---SS--IAVMFVLLFLCGWFQGMGWPPCGRTM-VHW----WSQ---KERGGIVSVWNCAHNVGGGIPPL  170 (447)
T ss_dssp             ---HHCHHHH---SS--SSHHHHHHHHHHHHHHHTHHHHHHHH-HTT----CTT---THHHHHHHHHHHHHHHHHTSHHH
T ss_pred             ---cccchhh---hh--HHHHHHHHHHHHHhhhhhhhHHHHHH-HHH----HHh---hcccccccccccccchhhhhhhh
Confidence               1110010   01  12344555556665555555444333 343    333   27889999999999999999999


Q ss_pred             HHHHHHhhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhHHHHHHH
Q 007555          311 LFGILLSKYEP-VTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLG  389 (598)
Q Consensus       311 lgGlL~s~~~~-~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG  389 (598)
                      +++.+....+. .....+.......   ..++. +...+- .|+..+.+..++  .+.  +..++..+..+......+..
T Consensus       171 ~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~-~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~  241 (447)
T d1pw4a_         171 LFLLGMAWFNDWHAALYMPAFCAIL---VALFA-FAMMRD-TPQSCGLPPIEE--YKN--DYPDDYNEKAEQELTAKQIF  241 (447)
T ss_dssp             HHHHHHHHTCCSTTCTHHHHHHHHH---HHHHH-HHHCCC-SSTTTCCCSCTT--TCC--C-------------CCTHHH
T ss_pred             hhhhHhhhhhcccccchhhhhhHHH---HHHHH-HHhccc-chhhcccchhhh--hhh--hcccchhhccccccchhhHH
Confidence            99998876542 2222222111111   11111 111110 111000000000  000  00000000000011111234


Q ss_pred             HHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007555          390 WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAG  468 (598)
Q Consensus       390 ~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~  468 (598)
                      +++.+++|.+........++......+....+.|+.+ .+++....+...+...+++++|.++.+++.+|.+..+.....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  321 (447)
T d1pw4a_         242 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  321 (447)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence            5666777766554333333322212344456667765 799999999999999999999999999999988754332222


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHH-HH-HH
Q 007555          469 LIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLV-ES-VM  546 (598)
Q Consensus       469 l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~-~l-l~  546 (598)
                      .... .+...+...+... ....  ..+.....+...++..........+.++..|++.||++.|+.++..+.. .. .+
T Consensus       322 ~~~~-~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~  397 (447)
T d1pw4a_         322 VFFM-TLVTIATIVYWMN-PAGN--PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS  397 (447)
T ss_dssp             HHHH-HHHHHHHHHTTSC-CTTC--HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhH-HHHHHHHHHHHhc-cccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 1111111111111 1111  1111112222333444556677788999999999999999998887764 33 34


Q ss_pred             HHhhhhccCcchhHHHHHHHHHHHHHHHHHH
Q 007555          547 LGVAIIANDVSHFGFLATLSLLSVVGAAWMF  577 (598)
Q Consensus       547 ~~~~i~~~~~~~f~~l~l~S~~~V~~a~~l~  577 (598)
                      .+.+.+.+..+......+.....+.....++
T Consensus       398 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         398 AIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            5567766665544444444333343333333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.6e-17  Score=167.77  Aligned_cols=365  Identities=11%  Similarity=-0.011  Sum_probs=198.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcccccceeeccCCchHHHHHHHHHHH
Q 007555          145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA  223 (598)
Q Consensus       145 r~r~f~~L~~gq~lS~~G~~i~~fAlpL~v~~lt~-S~l~~av~~~~~~Lp~lL~gp~aGvlvDR~~Rr~vmi~~d~~q~  223 (598)
                      +||+|+.+...+++..++..++.-.+|+|+.+..+ |..++|+...+..++.++.+|+.|.++||++|||+++.+..+..
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            68899999999999999999998889999999888 99999999999999999999999999999999999988776543


Q ss_pred             HHHHHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHHHHHHhhhhhhhccccceeeecCCCchhHHHHHHHHHHHHHHH
Q 007555          224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL  303 (598)
Q Consensus       224 ~~v~ls~~~l~~~~~~~~~~~~~l~~~l~vv~~llg~i~~l~~~a~~~aIerdwvp~Iv~~~~~~~L~~aNa~l~~id~~  303 (598)
                      +...    ........     .......++...+.+........+......     ....+ ++.+..++++........
T Consensus        85 ~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~  149 (417)
T d1pv7a_          85 VMFA----PFFIFIFG-----PLLQYNILVGSIVGGIYLGFCFNAGAPAVE-----AFIEK-VSRRSNFEFGRARMFGCV  149 (417)
T ss_dssp             HTHH----HHHHHTHH-----HHHHTTCHHHHHHTTTTGGGGGTTHHHHHH-----HHHHH-HHHHHSCCHHHHHHHHHH
T ss_pred             HHHH----HHHHhhhh-----hhHHHHHHHHHHHhhhcccccccchhhccc-----ccccc-hhhhhHHHHHHHhhhhcc
Confidence            3311    11111000     000000111111111111111111111110     01111 112344567777778888


Q ss_pred             HHHhhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCccchhhhH
Q 007555          304 CEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGI  383 (598)
Q Consensus       304 ~~i~GP~lgGlL~s~~~~~~~l~~~~~~~~~S~~~~~l~~~li~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (598)
                      ..++||.++|.+....+..........    ......   ...... .+.+...++.+++ ++   ..  +.     .. 
T Consensus       150 ~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~---~~~~~~-~~~~~~~~~~~~~-~~---~~--~~-----~~-  209 (417)
T d1pv7a_         150 GWALGASIVGIMFTINNQFVFWLGSGC----ALILAV---LLFFAK-TDAPSSATVANAV-GA---NH--SA-----FS-  209 (417)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH----HHHHHH---HHHSSC-CCSCSSSCSSHHH-HS---CC--CC-----CC-
T ss_pred             ccccccccccccccccccccccchhhH----HHHHHH---HHHHHh-cccccchhhhhhh-hh---hc--cc-----cc-
Confidence            899999999999886543322221111    111111   111111 1111111100000 00   00  00     00 


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHH----hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007555          384 EAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLT----QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL  459 (598)
Q Consensus       384 ~~i~eG~~~~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~----~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrl  459 (598)
                         ....+...+++..+...............+......+..    +.+.+....+...+..+++++++....+++.+|.
T Consensus       210 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~  286 (417)
T d1pv7a_         210 ---LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI  286 (417)
T ss_dssp             ---HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             ---ccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccc
Confidence               111222344444333222222211110112222222222    2355666788888999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHH
Q 007555          460 GILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVA  539 (598)
Q Consensus       460 g~~r~g~~~l~~q~~~L~~~v~~~~~g~~~~~~~~~~~~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~  539 (598)
                      +..+....+....    ..+...+....  +...   .....++..++...+.....+++|+.+|++.||++.|...++.
T Consensus       287 ~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~---~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (417)
T d1pv7a_         287 GGKNALLLAGTIM----SVRIIGSSFAT--SALE---VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFF  357 (417)
T ss_dssp             CHHHHHHHHHHHH----HHHHHHHHTCC--CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTT
T ss_pred             ccccchhhhHHHH----HHhhhcccccc--ccch---hhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHH
Confidence            9877665443211    11111111111  1111   1122233334445667888999999999999999999866544


Q ss_pred             H-HH-HHHHHHhhhhccCc
Q 007555          540 S-LV-ESVMLGVAIIANDV  556 (598)
Q Consensus       540 ~-~~-~ll~~~~~i~~~~~  556 (598)
                      . +. .+.+.+.|.+.+..
T Consensus       358 ~~~g~~i~~~~~G~l~~~~  376 (417)
T d1pv7a_         358 KQLAMIFMSVLAGNMYESI  376 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3 33 34556667665443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=7.8e-06  Score=82.87  Aligned_cols=119  Identities=13%  Similarity=0.034  Sum_probs=81.5

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHhhcccccchhHHHH
Q 007555          419 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLL-AMAVAVYWSGSLSQQNPLLFF  497 (598)
Q Consensus       419 l~~~yl~~lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~~q~~~L-~~~v~~~~~g~~~~~~~~~~~  497 (598)
                      ...+++.+.|++++++|++.++..++..++.+..+++.+|+|..+....+........ ..+.......+    ...+  
T Consensus        46 ~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--  119 (447)
T d1pw4a_          46 LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS----IAVM--  119 (447)
T ss_dssp             HHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS----SSHH--
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhh----HHHH--
Confidence            4556777899999999999999999999999999999999999887766544322211 11111111111    1111  


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccCCCccchhHHHHHHHHHHHHH
Q 007555          498 LCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVE  543 (598)
Q Consensus       498 ~~~i~lsr~Gl~~fdl~~~~l~Q~~VP~~~rGRV~sv~~sl~~~~~  543 (598)
                      ..+-++.+++..........++.+..|+++||+.+|..++...+..
T Consensus       120 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  165 (447)
T d1pw4a_         120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG  165 (447)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhh
Confidence            1122223334344566778899999999999999999887777664

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=0.00015  Score=70.92  Aligned_cols=78  Identities=12%  Similarity=0.053  Sum_probs=56.9

Q ss_pred             HhcCCchHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 007555          393 YMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI  470 (598)
Q Consensus       393 ~~~~pvll~~l~~~lL~~~vll~f~~l~~~yl~~-lg~s~~~iG~~~g~gavgGLlGtl~~~~l~rrlg~~r~g~~~l~  470 (598)
                      +.|||-+.......++++.......+.++.|+++ .|+++.++|++.++..++.+++....+++.+|+|..|...++..
T Consensus         3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~   81 (417)
T d1pv7a_           3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT   81 (417)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHH
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            5667765543333333322213445566777775 79999999999999999999999999999999999887665543