Citrus Sinensis ID: 007563

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------60
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
ccccccccccHHHHcccccEEEEcccccEEEEEcccccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHcccEEEEEEEccccEEEEEEccccccccccEEEcccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcEEccccccccEEEEEEccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHcccHHHHHHHHccEEEEcccccccccHHHHHHHHHHHccccccccEEEcccccccccccEEEcEEEEccccccccccccHHHHHHHccccccccccccccccccEEEEEccc
cccccccccHHHHHHHcccEEEEcccccEEEEEEcccccccccccEEEEEccccccccHHHHHHHHcccccccHHHHHHccHHHHHHccHcHHHHHHccccccccccccccccccccccccEEHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEcHHHHHccccccEEEEcccccEEEEEccccccHHcHHHHHHHHHHHHHHHccccHHHHccccEEEEccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEccccccHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEcHHHHHcccccccccEccccccccccccccHHcccccccccccccccccccHHHcccEcccccEEEEcccccccHcccccHHHccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHcEEEcccccccccHHHHHHHHHHHHcccccEEEEEccccccccccEEEEEcHHHHHHHHHHHHHHEcHHHHHHccccEEEcccccccHHHHHHHHHHHcc
mdylktvvpsqliaergsnlvvinpgsaniriglaqhdtplniphciarrtsqvpkrnvVDQMLNSQVTTSQHVERERAYDVIASLMkipfldeevannsfprkmgrvdafnqqnsrkdvafswtnvyekepmpstalessssmnhgiikesmgqhrntdikELNSSERKFREFicgeealrvsptepycihrpirrghlnisqhypmQQVLEDLYAIWDWILTeklhiprserNLYSAILVlpesfdnrEIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVedgvalpntektlpfggevqILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHsyedgmppgshktrlialnvppmglfypkllvpdvypppprswfndyedmledtwhtdfprrsdisdnfypginvglpmwesypvlttkpkkeekigLAEAVTSSILSTGRIDLQRKLFCSIQLIGgvaltgglipaveervlhaipsneaIDMVEVLQsrtnptyvswkggavLGILDFGRDAWIHREDwirngihigsgrkykdsYFLQAQAMCYINS
mdylktvvpsqliaergsNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMlnsqvttsqhvereRAYDVIASLMKIPFLDEEVANNSFPRKMGrvdafnqqnsrkdVAFSWTNVYEKEPMPSTALESSSSMNHGIIKesmgqhrntdIKELNSSERKFREFIcgeealrvsptepyCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIrngihigsgrkYKDSYFLQAQAMCYINS
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
*****TVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQV***NVVD************VERERAYDVIASLMKIPFLDEEVA**********************VAFSWTNV*******************************************FREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYI**
******V*******ERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRT********************************************************************************P***T**ESSS*************************ERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDIS*****************************IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNE***MVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN*
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKE***********SMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
*DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANN********************VAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDI*******RKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
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MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query598 2.2.26 [Sep-21-2011]
Q9LSW2596 Actin-related protein 9 O yes no 0.971 0.974 0.626 0.0
A2XQX0586 Actin-related protein 9 O N/A no 0.969 0.989 0.619 0.0
Q0JF03586 Actin-related protein 9 O yes no 0.969 0.989 0.619 0.0
P59679623 Actin-related protein 8 O yes no 0.854 0.820 0.256 6e-49
Q8R2S9624 Actin-related protein 8 O yes no 0.590 0.565 0.316 5e-43
D2I1E3624 Actin-related protein 8 O yes no 0.590 0.565 0.323 9e-43
Q1LZF2624 Actin-related protein 8 O yes no 0.590 0.565 0.321 1e-42
Q9H981624 Actin-related protein 8 O yes no 0.590 0.565 0.316 6e-42
Q5RDA1624 Actin-related protein 8 O yes no 0.590 0.565 0.316 3e-41
B5X2S3632 Actin-related protein 8 O N/A no 0.591 0.560 0.313 3e-41
>sp|Q9LSW2|ARP9_ARATH Actin-related protein 9 OS=Arabidopsis thaliana GN=ARP9 PE=2 SV=1 Back     alignment and function desciption
 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/597 (62%), Positives = 464/597 (77%), Gaps = 16/597 (2%)

Query: 2   DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVD 61
           DYLKTV P+Q+++ERG+NLVVIN GSAN+R+GLA  + P N+P+CIAR  +Q  K  VVD
Sbjct: 14  DYLKTVAPTQILSERGANLVVINLGSANVRVGLAMDEKPFNVPNCIARYITQSGKPTVVD 73

Query: 62  QMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS-RKDV 120
           QMLN++VTT+QHV+RERAY+  ASL+KI FLDE  ++ S  RKMGR+D +NQ ++ +KD 
Sbjct: 74  QMLNTEVTTNQHVDRERAYNSAASLLKILFLDESSSSGSASRKMGRIDGYNQASTIKKDS 133

Query: 121 AFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEA 180
            F+WT+VYE E + S A  + +S + G    S      TD K+ + S+RK+R+ I GEEA
Sbjct: 134 VFTWTDVYEDEKI-SLASPAETSPDKGDASASEAVPDVTDSKDTSESKRKYRKMIFGEEA 192

Query: 181 LRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAI 240
           L++SP EPYC++ PIRRGH N+S HY  Q+V EDL AI DWIL EKLHI   ER  + A+
Sbjct: 193 LKISPKEPYCLYHPIRRGHFNVSPHYSAQRVCEDLTAILDWILLEKLHITHKERFSFHAV 252

Query: 241 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVIC 300
           +V+PE+FD REIKEML+IVL +L F SAVVHQEGL+AVFGNGL+TAC+VN+GAQ ++V+C
Sbjct: 253 IVVPETFDTREIKEMLTIVLGELYFNSAVVHQEGLSAVFGNGLTTACIVNIGAQTSTVVC 312

Query: 301 VEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIK 360
           VEDGV+LPNTEK LPFGGE    DI RCLLW QRH+Q WPQI TD+L K +D+LMLN++K
Sbjct: 313 VEDGVSLPNTEKILPFGGE----DICRCLLWIQRHYQKWPQINTDVLAKPIDMLMLNQLK 368

Query: 361 ESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRS 420
           ES+CEI+ GE++ VA VHSYE+GMP   HKT L +LNVPPMGLFYP LLVP+++P PPR 
Sbjct: 369 ESFCEIRAGELETVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPRQ 428

Query: 421 WFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAV 480
           WF DYE+MLEDTW+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+
Sbjct: 429 WFQDYENMLEDTWNMDFGG----------GGNMGLPMWDSFAFSPSKPKKEEKIGLAEAI 478

Query: 481 TSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRT 540
           TSSILS GRIDL+RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAID V+VL SRT
Sbjct: 479 TSSILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRT 538

Query: 541 NPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN 597
            P +V+WKGGA+LGILDFGR+AWI R  W+ NG++ G  +KYKDSY LQ QAM +IN
Sbjct: 539 EPQFVTWKGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595

Arabidopsis thaliana (taxid: 3702)
>sp|A2XQX0|ARP9_ORYSI Actin-related protein 9 OS=Oryza sativa subsp. indica GN=ARP9 PE=2 SV=2 Back     alignment and function description
>sp|Q0JF03|ARP9_ORYSJ Actin-related protein 9 OS=Oryza sativa subsp. japonica GN=ARP9 PE=2 SV=1 Back     alignment and function description
>sp|P59679|ARP8_DANRE Actin-related protein 8 OS=Danio rerio GN=actr8 PE=2 SV=1 Back     alignment and function description
>sp|Q8R2S9|ARP8_MOUSE Actin-related protein 8 OS=Mus musculus GN=Actr8 PE=2 SV=1 Back     alignment and function description
>sp|D2I1E3|ARP8_AILME Actin-related protein 8 OS=Ailuropoda melanoleuca GN=ACTR8 PE=3 SV=1 Back     alignment and function description
>sp|Q1LZF2|ARP8_BOVIN Actin-related protein 8 OS=Bos taurus GN=ACTR8 PE=2 SV=1 Back     alignment and function description
>sp|Q9H981|ARP8_HUMAN Actin-related protein 8 OS=Homo sapiens GN=ACTR8 PE=1 SV=2 Back     alignment and function description
>sp|Q5RDA1|ARP8_PONAB Actin-related protein 8 OS=Pongo abelii GN=ACTR8 PE=2 SV=1 Back     alignment and function description
>sp|B5X2S3|ARP8_SALSA Actin-related protein 8 OS=Salmo salar GN=actr8 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query598
255576846589 conserved hypothetical protein [Ricinus 0.984 1.0 0.809 0.0
296083596632 unnamed protein product [Vitis vinifera] 0.989 0.936 0.793 0.0
225433003602 PREDICTED: actin-related protein 9-like 0.988 0.981 0.793 0.0
449432582599 PREDICTED: actin-related protein 9-like 0.986 0.984 0.777 0.0
356533797591 PREDICTED: actin-related protein 9-like 0.988 1.0 0.742 0.0
356576460589 PREDICTED: actin-related protein 9-like 0.984 1.0 0.734 0.0
449526595512 PREDICTED: actin-related protein 9-like, 0.852 0.996 0.778 0.0
224107879480 actin related protein [Populus trichocar 0.802 1.0 0.774 0.0
297795073596 hypothetical protein ARALYDRAFT_494650 [ 0.971 0.974 0.636 0.0
26450570584 putative actin [Arabidopsis thaliana] 0.973 0.996 0.627 0.0
>gi|255576846|ref|XP_002529309.1| conserved hypothetical protein [Ricinus communis] gi|223531233|gb|EEF33078.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/598 (80%), Positives = 540/598 (90%), Gaps = 9/598 (1%)

Query: 1   MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVV 60
           MDYLKTVVPSQL+AERGSNLVVINPGSA++RIGLA  DTP N+PHCIAR +SQ PK NV 
Sbjct: 1   MDYLKTVVPSQLVAERGSNLVVINPGSASVRIGLAPQDTPFNVPHCIARYSSQSPKLNVR 60

Query: 61  DQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDV 120
           DQMLNSQVTT+QH+ERE+AYD+IAS +KIPFLDEEVANNSFPRK+GRVD FN Q+ RKDV
Sbjct: 61  DQMLNSQVTTAQHMEREKAYDIIASYLKIPFLDEEVANNSFPRKIGRVDGFNPQSGRKDV 120

Query: 121 AFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEA 180
           AF+WTNVYE++   S++L S    N G I  S+ +  +TD K    S  K+R FICGEEA
Sbjct: 121 AFTWTNVYEQDT--SSSLASERPTNEGQIGGSLEKLESTDAK--GPSTSKYRGFICGEEA 176

Query: 181 LRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAI 240
           L++SPTEPYC+HRPIRRGHLNISQHYPMQQVLEDL+AIWDWIL EKLHIP+SERN+Y+AI
Sbjct: 177 LQISPTEPYCLHRPIRRGHLNISQHYPMQQVLEDLHAIWDWILIEKLHIPQSERNMYAAI 236

Query: 241 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVIC 300
           LVLPE+FDNREIKEM+SIVLRDLRF+SAVVHQEGLAAVFGNGLSTACV+N+GAQVTSVIC
Sbjct: 237 LVLPETFDNREIKEMISIVLRDLRFSSAVVHQEGLAAVFGNGLSTACVINIGAQVTSVIC 296

Query: 301 VEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIK 360
           +EDGVALPNTEKTLPFGGE    D+SRCLLWTQRHHQTWPQIRTDILTK +DLLMLNR++
Sbjct: 297 IEDGVALPNTEKTLPFGGE----DLSRCLLWTQRHHQTWPQIRTDILTKPLDLLMLNRLR 352

Query: 361 ESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRS 420
           ESYCEIKEGE+DAVAVV SYEDGMP GSHKTRL ALNVPPMGLFYP LLVPDVYPPPPRS
Sbjct: 353 ESYCEIKEGEVDAVAVVQSYEDGMPAGSHKTRLNALNVPPMGLFYPMLLVPDVYPPPPRS 412

Query: 421 WFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAV 480
           WF+DYEDMLEDTWH ++PRR D+SD  +P  + GLPMW+SYPV  +KPKKEEK+GLAEA+
Sbjct: 413 WFHDYEDMLEDTWHVEYPRRPDMSDGLFPAFS-GLPMWDSYPVFASKPKKEEKVGLAEAI 471

Query: 481 TSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRT 540
           TSSILSTGRIDL+RKLFCSIQLIGGVALT GLIP VE+RVLHAIPSNE ID VEVLQSR 
Sbjct: 472 TSSILSTGRIDLKRKLFCSIQLIGGVALTPGLIPVVEDRVLHAIPSNEVIDTVEVLQSRI 531

Query: 541 NPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS 598
           NPT+V+WKGGA+LG+LDFGRDAWIHREDWIRNGIHIGSGRKYKDSY+LQAQAMCYINS
Sbjct: 532 NPTFVTWKGGAILGVLDFGRDAWIHREDWIRNGIHIGSGRKYKDSYYLQAQAMCYINS 589

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296083596|emb|CBI23585.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433003|ref|XP_002280839.1| PREDICTED: actin-related protein 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432582|ref|XP_004134078.1| PREDICTED: actin-related protein 9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356533797|ref|XP_003535445.1| PREDICTED: actin-related protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356576460|ref|XP_003556349.1| PREDICTED: actin-related protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|449526595|ref|XP_004170299.1| PREDICTED: actin-related protein 9-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224107879|ref|XP_002314638.1| actin related protein [Populus trichocarpa] gi|222863678|gb|EEF00809.1| actin related protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297795073|ref|XP_002865421.1| hypothetical protein ARALYDRAFT_494650 [Arabidopsis lyrata subsp. lyrata] gi|297311256|gb|EFH41680.1| hypothetical protein ARALYDRAFT_494650 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|26450570|dbj|BAC42397.1| putative actin [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query598
TAIR|locus:2176516596 ARP9 "actin-related protein 9" 0.971 0.974 0.626 1.2e-202
UNIPROTKB|F1NXV7621 ACTR8 "Uncharacterized protein 0.431 0.415 0.358 1.5e-56
UNIPROTKB|F1SH80624 ACTR8 "Uncharacterized protein 0.377 0.362 0.387 4.7e-55
MGI|MGI:1860775624 Actr8 "ARP8 actin-related prot 0.392 0.376 0.382 2.3e-54
UNIPROTKB|Q1LZF2624 ACTR8 "Actin-related protein 8 0.377 0.362 0.383 9.1e-54
UNIPROTKB|Q9H981624 ACTR8 "Actin-related protein 8 0.377 0.362 0.375 2.9e-53
ZFIN|ZDB-GENE-030131-5065623 actr8 "ARP8 actin-related prot 0.399 0.383 0.349 2e-50
POMBASE|SPAC664.02c662 arp8 "actin-like protein, Ino8 0.530 0.478 0.299 2.1e-39
UNIPROTKB|Q0IEG8562 Arp8 "Actin-related protein 8" 0.381 0.405 0.325 1.4e-38
FB|FBgn0030877607 Arp8 "Actin-related protein 8" 0.289 0.285 0.316 2.7e-33
TAIR|locus:2176516 ARP9 "actin-related protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1961 (695.4 bits), Expect = 1.2e-202, P = 1.2e-202
 Identities = 374/597 (62%), Positives = 464/597 (77%)

Query:     2 DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVD 61
             DYLKTV P+Q+++ERG+NLVVIN GSAN+R+GLA  + P N+P+CIAR  +Q  K  VVD
Sbjct:    14 DYLKTVAPTQILSERGANLVVINLGSANVRVGLAMDEKPFNVPNCIARYITQSGKPTVVD 73

Query:    62 QMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS-RKDV 120
             QMLN++VTT+QHV+RERAY+  ASL+KI FLDE  ++ S  RKMGR+D +NQ ++ +KD 
Sbjct:    74 QMLNTEVTTNQHVDRERAYNSAASLLKILFLDESSSSGSASRKMGRIDGYNQASTIKKDS 133

Query:   121 AFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEA 180
              F+WT+VYE E + S A  + +S + G    S      TD K+ + S+RK+R+ I GEEA
Sbjct:   134 VFTWTDVYEDEKI-SLASPAETSPDKGDASASEAVPDVTDSKDTSESKRKYRKMIFGEEA 192

Query:   181 LRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAI 240
             L++SP EPYC++ PIRRGH N+S HY  Q+V EDL AI DWIL EKLHI   ER  + A+
Sbjct:   193 LKISPKEPYCLYHPIRRGHFNVSPHYSAQRVCEDLTAILDWILLEKLHITHKERFSFHAV 252

Query:   241 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVIC 300
             +V+PE+FD REIKEML+IVL +L F SAVVHQEGL+AVFGNGL+TAC+VN+GAQ ++V+C
Sbjct:   253 IVVPETFDTREIKEMLTIVLGELYFNSAVVHQEGLSAVFGNGLTTACIVNIGAQTSTVVC 312

Query:   301 VEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIK 360
             VEDGV+LPNTEK LPFGGE    DI RCLLW QRH+Q WPQI TD+L K +D+LMLN++K
Sbjct:   313 VEDGVSLPNTEKILPFGGE----DICRCLLWIQRHYQKWPQINTDVLAKPIDMLMLNQLK 368

Query:   361 ESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRS 420
             ES+CEI+ GE++ VA VHSYE+GMP   HKT L +LNVPPMGLFYP LLVP+++P PPR 
Sbjct:   369 ESFCEIRAGELETVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPRQ 428

Query:   421 WFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAV 480
             WF DYE+MLEDTW+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+
Sbjct:   429 WFQDYENMLEDTWNMDFGG----------GGNMGLPMWDSFAFSPSKPKKEEKIGLAEAI 478

Query:   481 TSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRT 540
             TSSILS GRIDL+RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAID V+VL SRT
Sbjct:   479 TSSILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRT 538

Query:   541 NPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN 597
              P +V+WKGGA+LGILDFGR+AWI R  W+ NG++ G  +KYKDSY LQ QAM +IN
Sbjct:   539 EPQFVTWKGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595
GO:0005737 "cytoplasm" evidence=ISM
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
UNIPROTKB|F1NXV7 ACTR8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH80 ACTR8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1860775 Actr8 "ARP8 actin-related protein 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q1LZF2 ACTR8 "Actin-related protein 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H981 ACTR8 "Actin-related protein 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5065 actr8 "ARP8 actin-related protein 8 homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPAC664.02c arp8 "actin-like protein, Ino80 complex subunit Arp8" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IEG8 Arp8 "Actin-related protein 8" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
FB|FBgn0030877 Arp8 "Actin-related protein 8" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LSW2ARP9_ARATHNo assigned EC number0.62640.97150.9748yesno
Q0JF03ARP9_ORYSJNo assigned EC number0.61920.96980.9897yesno
A2XQX0ARP9_ORYSINo assigned EC number0.61920.96980.9897N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query598
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 5e-17
pfam00022367 pfam00022, Actin, Actin 1e-14
smart00268373 smart00268, ACTIN, Actin 8e-11
smart00268373 smart00268, ACTIN, Actin 4e-05
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 4e-04
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 0.001
pfam00022367 pfam00022, Actin, Actin 0.002
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information 
 Score = 83.6 bits (207), Expect = 5e-17
 Identities = 86/432 (19%), Positives = 148/432 (34%), Gaps = 57/432 (13%)

Query: 157 RNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLY 216
           R  D   +     +   ++ G EA          +  PI  G   I  ++   +      
Sbjct: 38  RRRDEDSVMEDTEEKDTYV-GNEAQNDRDNSLLELRYPIENG---IILNWDAME------ 87

Query: 217 AIWDWILTEKLHIPRSERNLYSAILVLPESFDN-REIKE-MLSIVLRDLRFASAVVHQEG 274
            IWD+    K          +   L+L E   N    +E +  ++   L   +  +  + 
Sbjct: 88  QIWDYTFFNKGD-LLPSPEEHP--LLLTEPPLNPPSNREKITELLFETLNVPALYLAIQA 144

Query: 275 LAAVFGNGLS--TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWT 332
           + +++ +G S  T  V++ G  VT VI V DG+ LP   K +  GG   I D  + LL  
Sbjct: 145 VLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGR-DITDYLKKLL-- 201

Query: 333 QRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEI----DAVAVVHSYEDGMPPGS 388
           +  +                  ++N IKE  CE  +       DA       E+   P  
Sbjct: 202 REKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEK--PAE 259

Query: 389 HKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDF----------P 438
             T           +      +PD             E    +     F           
Sbjct: 260 KSTESTFQLSKETSIAKESKELPD-----------GEEIEFGN--EERFKAPEILFKPEL 306

Query: 439 RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFC 498
             S + +      +    + E+Y +  T    +   GL E V  SI      D+++ L+ 
Sbjct: 307 PISGLEEAGKIDESKQELVAENYEISPTNLGNDI-AGLPELVYQSIQI-CDEDVRKSLYS 364

Query: 499 SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDM-VEVLQSRTNPTYVSWKGGAVLGILD 557
           +I L GG       IP   ER+   + S       V V+    +P+  +W G ++L  L+
Sbjct: 365 NIVLTGGT----SKIPGFAERLQKELTSLAPSIWKVSVIPPP-DPSLDAWLGASILASLE 419

Query: 558 FGRDAWIHREDW 569
             +  WI +E++
Sbjct: 420 TFQQLWITKEEY 431

Length = 444
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 598
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 99.96
PRK13930335 rod shape-determining protein MreB; Provisional 99.95
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.93
PRK13929335 rod-share determining protein MreBH; Provisional 99.9
PRK13928336 rod shape-determining protein Mbl; Provisional 99.88
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.85
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.57
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.38
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.17
CHL00094 621 dnaK heat shock protein 70 98.74
PRK09472420 ftsA cell division protein FtsA; Reviewed 98.71
PTZ00400 663 DnaK-type molecular chaperone; Provisional 98.7
TIGR02350595 prok_dnaK chaperone protein DnaK. Members of this 98.67
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 98.67
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 98.65
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 98.65
PLN03184 673 chloroplast Hsp70; Provisional 98.63
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 98.61
PRK13411 653 molecular chaperone DnaK; Provisional 98.56
PRK13410 668 molecular chaperone DnaK; Provisional 98.55
PTZ00009 653 heat shock 70 kDa protein; Provisional 98.53
PRK05183 616 hscA chaperone protein HscA; Provisional 98.49
PRK01433595 hscA chaperone protein HscA; Provisional 98.45
PRK11678450 putative chaperone; Provisional 98.27
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 98.23
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 98.22
COG0443579 DnaK Molecular chaperone [Posttranslational modifi 98.02
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 98.0
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 97.23
PRK13917344 plasmid segregation protein ParM; Provisional 97.12
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 96.77
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 95.37
COG4820277 EutJ Ethanolamine utilization protein, possible ch 95.05
PRK10719475 eutA reactivating factor for ethanolamine ammonia 94.86
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 94.25
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 94.13
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 90.54
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 90.54
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 85.04
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 83.75
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 83.24
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 82.72
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 82.4
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 82.21
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1e-92  Score=736.09  Aligned_cols=533  Identities=41%  Similarity=0.695  Sum_probs=400.5

Q ss_pred             CCcccccCchhhhhhcCCCEEEEcCCCCeeeeecCCCCCCCccceeeEEecCCCCccccccccccccccchhh-------
Q 007563            1 MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQH-------   73 (598)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~iVihpGS~~lriG~asd~~P~~ip~~iA~~~~~~~~~~~~~~~~~~~~~~~~~-------   73 (598)
                      ++|.+.+-++|...+++.|+||||+||+|+|||+|+|.+|.++||||||+.++.    +.+++++....+.++       
T Consensus        16 ~p~~~g~ee~q~~e~ed~k~ivih~gsqnlrig~a~d~np~tv~~~iar~~rap----~sdr~~~~p~l~p~~~e~~n~~   91 (618)
T KOG0797|consen   16 QPYLKGVEETQILEEEDAKLIVIHLGSQNLRIGLAMDENPFTVPNCIARYIRAP----VSDRMLNTPVLTPQHVEERNYN   91 (618)
T ss_pred             CCcccCCCccccccccCCCeeEecCCcchhhccccccCCCcccccceeecccCc----hhhhcccCcCCCcccccccccc
Confidence            478999999999999999999999999999999999999999999999998762    222222211111111       


Q ss_pred             --hhHHHHHHHHHhhcCCCcchHhhhcCCCCcccccccccccccccccccccccccccCCCCCCCcccccccccccCccc
Q 007563           74 --VERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKE  151 (598)
Q Consensus        74 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~pe  151 (598)
                        .++++.....++.++..          +.+++                        .|+.-.|.+.++++||+-.++|
T Consensus        92 ~~~ef~~~lll~~s~lss~----------~~~kk------------------------~ri~v~~~~q~lkn~n~~S~ae  137 (618)
T KOG0797|consen   92 SAAEFLKILLLDESSLSSS----------ASRKK------------------------GRIDVYNQAQTLKNDNVASPAE  137 (618)
T ss_pred             chhhhhHHHHHhhhhhhhH----------HHhhc------------------------CcccccCchHHhhcccccCccc
Confidence              22222222112222211          11122                        2333346778888999999999


Q ss_pred             ccCCCC-Ccccccccccc------ccCCceEEccccccCCCCCCceEecceecCeeeec-CCCCccccHHHHHHHHHHHh
Q 007563          152 SMGQHR-NTDIKELNSSE------RKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHYPMQQVLEDLYAIWDWIL  223 (598)
Q Consensus       152 ~~~~~~-~~~~~~~~~~~------~~~~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~-~~~s~~~~~~dle~i~~~~l  223 (598)
                      .+|..+ +.-+.+|.+.+      ...++..+|++|..++   +|.|++||++|.||++ +|+|+|+.++|+++||+|+|
T Consensus       138 tvP~ps~~~a~~~wld~e~~~hv~v~c~kr~~~ee~n~i~---~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL  214 (618)
T KOG0797|consen  138 TVPDPSASEAVPDWLDSEDTSHVKVKCRKRIFGEEANKIS---PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYAL  214 (618)
T ss_pred             cCCCCCCCcCCCCccccccchHHHHHHHHHHhhhhhhcCC---cceeecccccceeccCCcchhHHHHHHHHHHHHHHHH
Confidence            998433 22222332211      1334556777777774   8999999999999997 78899999999999999999


Q ss_pred             hhhcCCCCCCCCccceEEecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeC
Q 007563          224 TEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVED  303 (598)
Q Consensus       224 ~~~L~i~~~~~~~y~~VLvip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~d  303 (598)
                      .++|+|+++.+.+|++|||+||.|+++++++++.++|.+|+|.++.++|||+||+||+|++++||||||||+|+|+||+|
T Consensus       215 ~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEd  294 (618)
T KOG0797|consen  215 LEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVED  294 (618)
T ss_pred             HHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeccCcEEeccccccChHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccc-cccccC
Q 007563          304 GVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAV-VHSYED  382 (598)
Q Consensus       304 G~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~-~~~~~~  382 (598)
                      |.++++++++|+|||+    |||++|.|+|++. .|| |+++++...+||.++++|||+||++..+++.++.. +..+++
T Consensus       295 Gvs~~ntri~L~YGGd----Ditr~f~~ll~rs-~FP-y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~p  368 (618)
T KOG0797|consen  295 GVSLPNTRIILPYGGD----DITRCFLWLLRRS-GFP-YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREP  368 (618)
T ss_pred             CccccCceEEeccCCc----hHHHHHHHHHHhc-CCC-cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCC
Confidence            9999999999999999    9999999999775 476 57788888999999999999999999887665422 223333


Q ss_pred             CCCCCCcceeee---eccCCCCCCCCCcccCCCC--------CCCCCCCCCCCcccccCCCccccCCC----CCCCCCCC
Q 007563          383 GMPPGSHKTRLI---ALNVPPMGLFYPKLLVPDV--------YPPPPRSWFNDYEDMLEDTWHTDFPR----RSDISDNF  447 (598)
Q Consensus       383 ~~p~~~~k~~~~---~~~~aP~~lF~P~~~~~~~--------~~~p~~~~~~d~~d~~~d~~~~~~~e----r~~~~E~l  447 (598)
                      ..|  +.+|+|+   ++++|||++|+|.+|..+.        +++|.+.+..|++-++.+++....+.    +..+...+
T Consensus       369 n~~--~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i  446 (618)
T KOG0797|consen  369 NPP--TLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSI  446 (618)
T ss_pred             CCc--ceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhcccccccccccccccccccc
Confidence            333  5677775   5789999999999997654        22333322222222222222221110    00000000


Q ss_pred             -CCCCCCC-CC-----------CCCCCCc----------cC--------CCCCcccCCCHHHHHHHHHhcCCChhhHHHh
Q 007563          448 -YPGINVG-LP-----------MWESYPV----------LT--------TKPKKEEKIGLAEAVTSSILSTGRIDLQRKL  496 (598)
Q Consensus       448 -fp~~~~~-~~-----------~~~~~~~----------~~--------~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L  496 (598)
                       |.+.+++ +|           ..+.+..          .+        ...+..-..+|+++|+.||..|...|.+++|
T Consensus       447 ~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl  526 (618)
T KOG0797|consen  447 GFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKL  526 (618)
T ss_pred             cccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhh
Confidence             0000000 00           0000000          00        0001112346889999999999889999999


Q ss_pred             hcCeEEecCCCCCCChHHHHHHHHHhhCCC-CCCcceEEEcCCC--CCCccceEeceeeeccccCccceeeeHHHHHhcC
Q 007563          497 FCSIQLIGGVALTGGLIPAVEERVLHAIPS-NEAIDMVEVLQSR--TNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNG  573 (598)
Q Consensus       497 ~~nIvLvGG~S~ipG~~~rL~~eL~~~~p~-~~~i~~V~v~~~~--~dp~~~aWkGgSIla~L~s~~~~wItk~eyee~G  573 (598)
                      |++|+++||+.++|||.+.||+|+...+|+ ...++.|.|++++  |||++.+||||+|||.|+..+|+||++.||..+|
T Consensus       527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G  606 (618)
T KOG0797|consen  527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHG  606 (618)
T ss_pred             hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhh
Confidence            999999999999999999999999998887 4457889999976  9999999999999999999999999999999999


Q ss_pred             cceeeeccc
Q 007563          574 IHIGSGRKY  582 (598)
Q Consensus       574 ~~i~~~K~~  582 (598)
                      .|++..||+
T Consensus       607 ~RvL~~k~~  615 (618)
T KOG0797|consen  607 VRVLQYKKY  615 (618)
T ss_pred             hhhhhhccc
Confidence            999999997

>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query598
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 5e-43
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 2e-09
4am6_A655 C-terminal Domain Of Actin-related Protein Arp8 Fro 7e-27
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 4e-04
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure 
Iteration: 1

 Score =  172 bits (436), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 130/410 (31%), Positives = 200/410 (48%), Gaps = 58/410 (14%)
Query: 7   VVPSQLIAERGSN-LVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLN 65
           +VP  L  +  SN ++VI+PGS  +RIG A    P +IPH IARR  Q  +    D  L 
Sbjct: 3   LVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLL 62
Query: 66  SQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWT 125
            +         +R          +  +D+ +    + +KM         N  + +  S  
Sbjct: 63  REGLNKPESNEQRQNG-------LKMVDQAI----WSKKMS--------NGTRRIPVS-- 101
Query: 126 NVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSP 185
                   P  A   +  M   I+    G       K  N+S     E++ GEEAL V+P
Sbjct: 102 --------PEQARSYNKQMRPAILDHCSGN------KWTNTSHHP--EYLVGEEALYVNP 145
Query: 186 TEPYCIHRPIRRGHLNISQHYP-----MQQVLEDLYAIWDWILTEKLHIPRSERNLYSAI 240
            + Y IH PIRRG LNI   +P     +  VL D+  IW   + + L IP  +   Y  I
Sbjct: 146 LDCYNIHWPIRRGQLNI---HPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCI 202
Query: 241 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVIC 300
           L++P+ ++ + +KE+++++L  + F+  VVHQE + A +G+GLS+ C+V++G Q TSV C
Sbjct: 203 LLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCC 262
Query: 301 VEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIK 360
           VEDGV+  NT   L +GG     D+SRC  W  +    +P  R   LT  MD L+L  +K
Sbjct: 263 VEDGVSHRNTRLCLAYGGS----DVSRCFYWLMQ-RAGFP-YRECQLTNKMDCLLLQHLK 316
Query: 361 ESYCEIKEGEIDAVAVVHSYEDGMPPGS---HKTRLIALNV-PPMGLFYP 406
           E++C + + +I  +   H ++   P      ++ RL    +  PM LFYP
Sbjct: 317 ETFCHLDQ-DISGLQ-DHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYP 364
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure
>pdb|4AM6|A Chain A, C-terminal Domain Of Actin-related Protein Arp8 From S. Cerevisiae Length = 655 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query598
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 3e-18
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 7e-08
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-04
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 7e-08
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 3e-07
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 7e-05
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
 Score = 86.6 bits (214), Expect = 3e-18
 Identities = 74/458 (16%), Positives = 140/458 (30%), Gaps = 96/458 (20%)

Query: 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPR 231
           ++    +      P + Y +   I  G         +    +     W W L  +L++  
Sbjct: 63  KKIFSEQSIG--IPRKDYELKPIIENG---------LVIDWDTAQEQWQWALQNELYLNS 111

Query: 232 SERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVN 290
           +        L+    +++ E ++  L ++L  ++F +  +        F  G     VV+
Sbjct: 112 NS---GIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVD 168

Query: 291 MGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCL--LWTQR-------------- 334
           +G    SV  + DG+ L  + +     G+     I+  +      +              
Sbjct: 169 IGHDTCSVSPIVDGMTLSKSTRRNFIAGK----FINHLIKKALEPKEIIPLFAIKQRKPE 224

Query: 335 --HHQTWPQIRTDILTKAMDLLMLNRIKESYCEI-----KEGEIDAV--AVVHSYEDGMP 385
                   ++   +   A +       KE+ C I      E     +      S E   P
Sbjct: 225 FIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIE--SP 282

Query: 386 PGSHKT-----RLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRR 440
                      R          LF PK          P +W      +++   +   P +
Sbjct: 283 WNEEIVFDNETRYGF----AEELFLPK------EDDIPANWPRSNSGVVKTWRNDYVPLK 332

Query: 441 SDISDNFYPGINVGLPMWESYPVLTTKPK--------------------------KEEKI 474
                          P  E      +K                              E I
Sbjct: 333 RTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELI 392

Query: 475 GLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERV---LHAIPSNEAID 531
           GLA+ V SSI+S+  +DL+  L  ++ L GG +   GL     +R+   L+ I  +    
Sbjct: 393 GLADLVYSSIMSS-DVDLRATLAHNVVLTGGTSSIPGL----SDRLMTELNKILPSLKFR 447

Query: 532 MVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDW 569
            +          Y SW GG++L  L      W+ ++++
Sbjct: 448 -ILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEY 484
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query598
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.94
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.62
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.54
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.44
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.42
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.39
1yuw_A554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.03
2kho_A605 Heat shock protein 70; molecular chaperone, HSP70, 98.95
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 98.9
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 98.87
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 98.85
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 98.61
4b9q_A605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 98.56
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 98.34
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 97.46
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 97.42
3js6_A355 Uncharacterized PARM protein; partition, segregati 96.95
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 96.48
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 96.37
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 84.45
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.1e-94  Score=811.72  Aligned_cols=528  Identities=30%  Similarity=0.518  Sum_probs=379.9

Q ss_pred             cCchhhhhhcCCC-EEEEcCCCCeeeeecCCCCCCCccceeeEEecCCCCccccccccccccc--cchhhhhHHHHHHHH
Q 007563            7 VVPSQLIAERGSN-LVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQV--TTSQHVERERAYDVI   83 (598)
Q Consensus         7 ~~~~~~~~~~~~~-~iVihpGS~~lriG~asd~~P~~ip~~iA~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   83 (598)
                      ++|++..++++++ ||||||||+|||||||+|.+|++||||||||+++.......+..+....  ..+..+++......+
T Consensus         3 ~~~~~~~~~~~~~~iIVIdpGS~~~riG~A~d~~P~~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (593)
T 4fo0_A            3 LVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMV   82 (593)
T ss_dssp             CCCGGGTTTSGGGGEEEEECCSSEEEEEETTCSSCEEEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHH
T ss_pred             CCCCccccccCCCCEEEEeCCCCCeEeeecCCCCCCeeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHH
Confidence            6899988777655 9999999999999999999999999999999876433333333222111  112222232222222


Q ss_pred             HhhcCCCcchHhhhcCCCCcccccccccccccccccccccccccccCCCCCCCcccccccccccCcccccCCCCCccccc
Q 007563           84 ASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKE  163 (598)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~pe~~~~~~~~~~~~  163 (598)
                      .+.++..                                  +..+++|+. +|++|++++||++.+||.+++|+++.+.+
T Consensus        83 ~~~~~~~----------------------------------~~~~~~r~~-~~s~~~~~~~n~~~~p~~i~~~~~~~~~~  127 (593)
T 4fo0_A           83 DQAIWSK----------------------------------KMSNGTRRI-PVSPEQARSYNKQMRPAILDHCSGNKWTN  127 (593)
T ss_dssp             HHHHHHS----------------------------------CCTTSCCCC-CCCHHHHHHHHTTCCCEEEESSCSCCCCC
T ss_pred             HHHHHHH----------------------------------hhhcccccC-CCcHHHhhhhhccCCCcccCCCCcccccc
Confidence            2222110                                  112334444 49999999999999999998886654322


Q ss_pred             cccccccCCceEEccccccCCCCCCceEecceecCeeeec--CCCCccccHHHHHHHHHHHhhhhcCCCCCCCCccceEE
Q 007563          164 LNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS--QHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAIL  241 (598)
Q Consensus       164 ~~~~~~~~~~~~vGeeAl~~~~~~~~~l~~Pi~~G~~n~~--~~~s~~~~~~dle~i~~~~l~~~L~i~~~~~~~y~~VL  241 (598)
                          ....+++|||+||+++++.+.|.|+|||+||.||++  +|.|++.+|+|+|+||+|+|+++|+|++++.+.|++||
T Consensus       128 ----~~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~pvll  203 (593)
T 4fo0_A          128 ----TSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCIL  203 (593)
T ss_dssp             ----CTTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHHHHHHHHHHHHHHHHTSCCCGGGGGGCEEEE
T ss_pred             ----ccccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcCHHHHHHHHHHHHHHhcCCCchhccCCcEEE
Confidence                224478999999999988889999999999999997  56699999999999999999999999999877776666


Q ss_pred             ecCCCCCcHHHHHHHHHHHHhcCCCeEeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccC
Q 007563          242 VLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQ  321 (598)
Q Consensus       242 vip~~~~~~~vr~l~ellfe~~~f~~v~~~qesv~a~fgaG~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~  321 (598)
                      +.|+.+++.+.++|+++|||.|+||+++++++++||+||+|++||||||||+++|+|+||+||+++.++++++++||+  
T Consensus       204 tep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~--  281 (593)
T 4fo0_A          204 LIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGS--  281 (593)
T ss_dssp             EECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCHH--
T ss_pred             EeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEeCCCceeeeeeECCEEehhheEEecccHH--
Confidence            666667777777799999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHHceeccCCccccccccccccCCCCCC-Ccceeee---ecc
Q 007563          322 ILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLI---ALN  397 (598)
Q Consensus       322 ~~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~---~~~  397 (598)
                        +||++|.+||+.++ +| +.+.++.++.|+.++++|||++||++.+.......  .+....|.+ +.++.++   +..
T Consensus       282 --~lt~~L~~lL~~~~-~~-~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~~--~~~~~~p~~~~~~~~~~~~~E~~  355 (593)
T 4fo0_A          282 --DVSRCFYWLMQRAG-FP-YRECQLTNKMDCLLLQHLKETFCHLDQDISGLQDH--EFQIRHPDSPALLYQFRLGDEKL  355 (593)
T ss_dssp             --HHHHHHHHHHHHTT-CS-CTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEEE--EEEECCTTSCEEEEEEEECTHHH
T ss_pred             --HHHHHHHHHHHhcC-CC-ccccccccchhHHHHHHHHHHhcccccchHHhhhh--hhhcccCCCCceeeEEeccchhh
Confidence              99999999998775 44 45567778899999999999999999764332111  111123332 3444443   456


Q ss_pred             CCCCCCCCCcccCCCCCCCC---CCCCCCCc---------------------------ccccCCCccccCC-CCCCCCCC
Q 007563          398 VPPMGLFYPKLLVPDVYPPP---PRSWFNDY---------------------------EDMLEDTWHTDFP-RRSDISDN  446 (598)
Q Consensus       398 ~aP~~lF~P~~~~~~~~~~p---~~~~~~d~---------------------------~d~~~d~~~~~~~-er~~~~E~  446 (598)
                      .+|+++|+|.++........   .+. ..++                           .-..+++....++ +|+.++|.
T Consensus       356 ~~p~~lf~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~  434 (593)
T 4fo0_A          356 QAPMALFYPATFGIVGQKMTTLQHRS-QGDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPER  434 (593)
T ss_dssp             HHHHTTTSGGGGCCCSSCCEEECC--------------------------------------------------------
T ss_pred             cCchhhcChhhhcccccccchhhhhc-ccCcccchhhhhhhhcccchhhhhhcccccccccCCCCcccccccccccCchh
Confidence            89999999988753321000   000 0000                           0123344444444 78999999


Q ss_pred             CC-CCCCCCCCCC-------CCCCcc--------CCCCCcccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCC
Q 007563          447 FY-PGINVGLPMW-------ESYPVL--------TTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTG  510 (598)
Q Consensus       447 lf-p~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ip  510 (598)
                      +| |....+....       ...+..        .......+..||++||.+||.+|+..|+|++||+||+||||+|++|
T Consensus       435 lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~p  514 (593)
T 4fo0_A          435 LHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFH  514 (593)
T ss_dssp             ------------------------------------CHHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCB
T ss_pred             ccCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchh
Confidence            99 4332111000       000000        0001113467999999999999944799999999999999999999


Q ss_pred             ChHHHHHHHHHhhCCCCCC--cceEEEcCC--CCCCccceEeceeeeccccCccceeeeHHHHHhcCcceeeeccc
Q 007563          511 GLIPAVEERVLHAIPSNEA--IDMVEVLQS--RTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY  582 (598)
Q Consensus       511 G~~~rL~~eL~~~~p~~~~--i~~V~v~~~--~~dp~~~aWkGgSIla~L~s~~~~wItk~eyee~G~~i~~~K~~  582 (598)
                      ||.+||++||..++|...+  +.+|+|++.  .+||++++|+||||||+|++|+++||||+||+|+|++||++||.
T Consensus       515 Gf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~  590 (593)
T 4fo0_A          515 KAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA  590 (593)
T ss_dssp             THHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred             cHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence            9999999999999986532  235677764  36999999999999999999999999999999999999999995
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 598
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 4e-18
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 1e-13
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 8e-05
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.3 bits (200), Expect = 4e-18
 Identities = 50/293 (17%), Positives = 94/293 (32%), Gaps = 71/293 (24%)

Query: 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIR 343
           +T  V++ G  VT  + + +G ALP+    L   G     D++  L+            R
Sbjct: 2   TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR----DLTDYLMKILTE-------R 50

Query: 344 TDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGL 403
                   +  ++  IKE  C +             +E+ M   +  + L      P G 
Sbjct: 51  GYSFVTTAEREIVRDIKEKLCYV----------ALDFENEMATAASSSSLEKSYELPDG- 99

Query: 404 FYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPV 463
                                          T    R    +  +    +G+        
Sbjct: 100 ----------------------------QVITIGNERFRCPETLFQPSFIGM-------- 123

Query: 464 LTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHA 523
                   E  G+ E   +SI     ID+++ L+ +  + GG  +     P + +R+   
Sbjct: 124 --------ESAGIHETTYNSI-MKCDIDIRKDLYANNVMSGGTTM----YPGIADRMQKE 170

Query: 524 IPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHI 576
           I +     M   + +     Y  W GG++L  L   +  WI ++++   G  I
Sbjct: 171 ITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 223
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query598
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 99.95
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.9
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.85
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 98.71
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 98.35
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 97.52
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 96.97
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 96.33
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 91.63
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 90.09
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 88.02
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 85.11
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 82.7
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 81.25
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-43  Score=347.82  Aligned_cols=223  Identities=21%  Similarity=0.356  Sum_probs=181.0

Q ss_pred             CceEEEEEeCCCcEEEEEeeCCeeeccCcEEeccccccChHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHH
Q 007563          283 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEVQILDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES  362 (598)
Q Consensus       283 ~~sa~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~~~~~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~  362 (598)
                      ++||||||+|++.|+|+||+||+++.++++++++||+    +||++|.++|..++.       ++....+..+++++|+.
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~----~lt~~l~~~L~~~~~-------~~~~~~~~~~~~~~ke~   69 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR----DLTDYLMKILTERGY-------SFVTTAEREIVRDIKEK   69 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHH----HHHHHHHHHHHHHTC-------CCCSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHH----HHHHHHHHHHhhccC-------CcCCHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999    999999999987652       34456788999999999


Q ss_pred             ceeccCCccccccccccccCCCCCCCcceeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCcccccCCCccccCC-CCC
Q 007563          363 YCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRS  441 (598)
Q Consensus       363 ~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~P~~~~~~~~~~p~~~~~~d~~d~~~d~~~~~~~-er~  441 (598)
                      +|+++.+......   .... .+.....                                    -.+||+..+.++ +|+
T Consensus        70 ~~~~~~d~~~e~~---~~~~-~~~~~~~------------------------------------~~lpdg~~i~i~~er~  109 (225)
T d2fxua2          70 LCYVALDFENEMA---TAAS-SSSLEKS------------------------------------YELPDGQVITIGNERF  109 (225)
T ss_dssp             HCCCCSSHHHHHH---HHHH-CSTTCEE------------------------------------EECTTSCEEEESTHHH
T ss_pred             HhhcccchhHHHh---hccc-Cccccee------------------------------------EECCCCCEEEEchHhc
Confidence            9999865221100   0000 0000000                                    023445555544 788


Q ss_pred             CCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCCCCCChHHHHHHHH
Q 007563          442 DISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERV  520 (598)
Q Consensus       442 ~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~ipG~~~rL~~eL  520 (598)
                      .++|.|| |...+                 .+..||+++|.+||.+| |.|+|+.|++||+|+||+|++|||.+||++||
T Consensus       110 ~~~E~lF~p~~~~-----------------~~~~gl~~~i~~sI~~~-~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El  171 (225)
T d2fxua2         110 RCPETLFQPSFIG-----------------MESAGIHETTYNSIMKC-DIDIRKDLYANNVMSGGTTMYPGIADRMQKEI  171 (225)
T ss_dssp             HHHHTTTCGGGGT-----------------CCSCCHHHHHHHHHHTS-CHHHHHHHHTCEEEESGGGCSTTHHHHHHHHH
T ss_pred             cccHhhcCccccC-----------------CccCChhHHHHHHhhcC-CcchhhhhhcCEEEeCCcccCCchhHHHHhHH
Confidence            9999999 55443                 35679999999999999 99999999999999999999999999999999


Q ss_pred             HhhCCCCCCcceEEEcCCCCCCccceEeceeeeccccCccceeeeHHHHHhcCcceee
Q 007563          521 LHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGS  578 (598)
Q Consensus       521 ~~~~p~~~~i~~V~v~~~~~dp~~~aWkGgSIla~L~s~~~~wItk~eyee~G~~i~~  578 (598)
                      ..+.|...++   ++.. +.+|++++|+||||+|+|++|+++||||+||+|+|++|+|
T Consensus       172 ~~~~~~~~~~---~v~~-~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         172 TALAPSTMKI---KIIA-PPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             HHHSCTTCCC---CEEC-CTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             HHhhccccce---EEec-CCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            9998876544   5554 3589999999999999999999999999999999999986
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure