Citrus Sinensis ID: 007568

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------60

MEAANNTNGNGYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILDYFVGNGAALSQFKTPRCTSNQVLVRILNDWTIKRFHSTAYC

cccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccHHHHHHccccccccccHHHHHHHHccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccHHHHHHcccccccccHHHHHccccHHHHHHHHHHHcccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccEEEEEEcccHHHHHHHHHHHHcccccccccccccccEEEEEccccccccccEEEEcccccEEEEEEccccccccccccccccccccccccccccccEEEEEEccccEEEccccccEEEEcEEEccccEEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHcccccHHHHcccccccccEEEEccccHHHHHHHHHHHcccccccccccEEcccHHHHHHHHHcccccccccccc

ccccccccccccccHHcHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccHHHHHHcccEEEHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccccccccHHHcccccccccccccccHEEEcccHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHcccccEEcHcHcccccEEEEEcccccccccEEEEEEcccEEEEEEEccccccccccccccccccccEcEEEEEEccEEEEEEEEcccEEEEEcccEEEEEcccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccEEEEEEEcccccHHHHHHHHHHHHHHHccHHHHHcccccccccEEEEEEcccHHHHHHHHHHHccccccccccccEcccHHHHHHHHHccHHHccccccc

meaanntngngygnnyecDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRlgdtkiqdmDACEMETLYTSLvplashadlepyiqriadgdtaslltqepitklslssgttegrqkyvpftkhssqTTLQIFRLAAAYrsrvypireggRILEFIYSSkqfktkggltagtatthyyaseefkikqektksftcspeevissgeykqsTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDvregslsssritlPKMRKAVLdtispkpylaSKIEVACKKLesldwfglvpklwpnakYVYSIMTGSMQHYLKKLRHYAgdlplvsadygsteswigvnvdpslppedvtfaviptfsyfefipihrrkqdcnsaiddfiedepvplsqvklgqEYEIVLTSFtglyryrlgdvvevagfhkgtpklnfVCRRKLILTVNIDKNTEKDLQLVVDRGSQllnktgaelvdftshadivnqpghYIIYWEIKGDVEEGVLNQcchemdvsfvdpgyvvsrrtnsigplelCIVKRGAFRMILDYFVgngaalsqfktprctsnQVLVRILNDwtikrfhstayc

meaanntngngygnnyECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKkrlgdtkiqDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPitklslssgttegRQKYvpftkhssqttLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEefkikqektksfTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVRegslsssritlpKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVAGfhkgtpklnfvcRRKLILTvnidkntekDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRrtnsigplelCIVKRGAFRMILDYFVGNGAALsqfktprctsnqVLVRilndwtikrfhstayc

MEAAnntngngygnnyECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFktkggltagtattHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILDYFVGNGAALSQFKTPRCTSNQVLVRILNDWTIKRFHSTAYC

**********GYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLT*******************YVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIK******FTCS*EEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILDYFVGNGAALSQFKTPRCTSNQVLVRILNDWTIKRFHS****

***********YGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSG**EGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQ******LTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNS****FIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILD***********F*TPRCTSNQVLVRILNDWTIKRFHSTAYC

********GNGYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILDYFVGNGAALSQFKTPRCTSNQVLVRILNDWTIKRFHSTAYC

*************NNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHR*******AIDD**EDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILDYFVGNGAALSQFKTPRCTSNQVLVRILNDWTIKRFHSTAYC

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		598	2.2.26 [Sep-21-2011]
Q6I581		581	Probable indole-3-acetic	yes	no	0.949	0.977	0.500	1e-172
Q9SKE2		575	Jasmonic acid-amido synth	no	no	0.938	0.975	0.479	1e-166
Q53P49		613	Probable indole-3-acetic	no	no	0.946	0.923	0.462	1e-159
Q5NAZ7		462	Probable indole-3-acetic	no	no	0.692	0.896	0.476	1e-111
O81829		612	Indole-3-acetic acid-amid	no	no	0.939	0.918	0.357	1e-105
Q9LSQ4		612	Indole-3-acetic acid-amid	no	no	0.939	0.918	0.345	1e-102
O22190		595	Indole-3-acetic acid-amid	no	no	0.929	0.934	0.341	1e-100
Q9FZ87		609	Indole-3-acetic acid-amid	no	no	0.938	0.921	0.338	1e-99
Q9LYU4		575	4-substituted benzoates-g	no	no	0.911	0.947	0.351	2e-99
Q0D4Z6		605	Probable indole-3-acetic	no	no	0.961	0.950	0.336	8e-99

>sp\|Q6I581\|GH35_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1	Back alignment and function desciption

 Score =  604 bits (1557), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 292/583 (50%), Positives = 411/583 (70%), Gaps = 15/583 (2%)

Query: 19  DIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVP 78
           + I  FE ++ +A  VQ++TL++ILE N   EYL+   G     D ++      Y S +P
Sbjct: 8   ETINEFEMLTRDAARVQKDTLKKILEINASAEYLQN-FGLGGRTDAES------YKSCIP 60

Query: 79  LASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFR 138
           L  H D+EPYIQRI DGDT+ ++T EPIT LSLSSGTT G+ K++PF     +TTLQI+R
Sbjct: 61  LCVHNDIEPYIQRIVDGDTSPVVTGEPITNLSLSSGTTHGKPKFIPFNDELLETTLQIYR 120

Query: 139 LAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFT 198
            + A+R+R YPI +G + L+F+Y SKQ  TKGG+ A TATT+ Y  + +K   +  +S  
Sbjct: 121 TSYAFRNREYPIGQG-KALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQC 179

Query: 199 CSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVR 258
           CSP+EVI   ++ QS YCHLL GL +S++V  + STFA+S+V AF  FEE W+D+C D+R
Sbjct: 180 CSPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIR 239

Query: 259 EGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYS 318
           +G LS  ++T P +R+AV   + P P LA  I   C  L   +W+G++P LWPNAKYVY 
Sbjct: 240 DGVLSK-KVTAPSIREAVSKILKPNPELADSIYKKCIGLS--NWYGVIPALWPNAKYVYG 296

Query: 319 IMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEF 378
           IMTGSM+ YLKKLRHYAG+LPL+SADYG++E W+G N+DP++PPE VT+AV+P   YFEF
Sbjct: 297 IMTGSMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEF 356

Query: 379 IPIHRR--KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVAGF 436
           IP+ +   ++  NSA   +IE +PV L++V++G+ YE+V+T+F GLYRYRLGDVV++A F
Sbjct: 357 IPLEKPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFAGLYRYRLGDVVKIARF 416

Query: 437 HKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQP 496
           H  TP+L F+CRR L+L++NIDKNTEKDLQL V+  S+ L     E++DFTS  +  + P
Sbjct: 417 HNSTPELQFICRRSLVLSINIDKNTEKDLQLAVEEASKFLEGEKLEVMDFTSFVERSSDP 476

Query: 497 GHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMIL 556
           G Y+I+WE+ GD  + VL+ C + +D++F+D GY  SR+  +IGPLEL I+++G F+ IL
Sbjct: 477 GRYVIFWELSGDASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGTFKEIL 536

Query: 557 DYFVGNGAALSQFKTPRCT--SNQVLVRILNDWTIKRFHSTAY 597
           D+F+  G A+SQFKTPR    SN  +++IL+    + + STAY
Sbjct: 537 DHFLSLGGAVSQFKTPRFVNPSNSKVLQILSRNVTQSYFSTAY 579

May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q9SKE2\|JAR1_ARATH Jasmonic acid-amido synthetase JAR1 OS=Arabidopsis thaliana GN=JAR1 PE=1 SV=2	Back alignment and function description

>sp\|Q53P49\|GH312_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1	Back alignment and function description

>sp\|Q5NAZ7\|GH33_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2	Back alignment and function description

>sp\|O81829\|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1	Back alignment and function description

>sp\|Q9LSQ4\|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1	Back alignment and function description

>sp\|O22190\|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1	Back alignment and function description

>sp\|Q9FZ87\|GH317_ARATH Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1	Back alignment and function description

>sp\|Q9LYU4\|GH312_ARATH 4-substituted benzoates-glutamate ligase GH3.12 OS=Arabidopsis thaliana GN=GH3.12 PE=1 SV=1	Back alignment and function description

>sp\|Q0D4Z6\|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		598
255553847		600	Indole-3-acetic acid-amido synthetase GH	0.996	0.993	0.828	0.0
346680625		590	indole-3-acetic acid-amido synthetase GH	0.974	0.988	0.801	0.0
224127132		595	GH3 family protein [Populus trichocarpa]	0.988	0.993	0.794	0.0
225447231		592	PREDICTED: probable indole-3-acetic acid	0.988	0.998	0.792	0.0
118487591		595	unknown [Populus trichocarpa]	0.984	0.989	0.795	0.0
224124584		595	GH3 family protein [Populus trichocarpa]	0.984	0.989	0.791	0.0
356544912		613	PREDICTED: probable indole-3-acetic acid	0.966	0.942	0.774	0.0
356515202		611	PREDICTED: probable indole-3-acetic acid	0.966	0.945	0.762	0.0
356542133		653	PREDICTED: probable indole-3-acetic acid	0.984	0.901	0.748	0.0
356547024		599	PREDICTED: probable indole-3-acetic acid	0.979	0.978	0.735	0.0

>gi\|255553847\|ref\|XP_002517964.1\| Indole-3-acetic acid-amido synthetase GH3.5, putative [Ricinus communis] gi\|223542946\|gb\|EEF44482.1\| Indole-3-acetic acid-amido synthetase GH3.5, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1027 bits (2656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/600 (82%), Positives = 545/600 (90%), Gaps = 4/600 (0%)

Query: 1   MEAANNTNGNGYGNNYEC---DIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLG 57
           ME+ ++ + NG GNN  C   DIIRWF+ +SENAG+VQ  TLRRILE N  VEYLKK LG
Sbjct: 1   MESTSSPSSNGNGNNGHCSSYDIIRWFDDVSENAGKVQTGTLRRILELNCGVEYLKKWLG 60

Query: 58  DTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTE 117
           D KIQ+MDAC +E+LYTSLVPLASHADL+PYIQRIADGDT  LLTQ+PI  LSLSSGTTE
Sbjct: 61  DIKIQEMDACALESLYTSLVPLASHADLDPYIQRIADGDTTPLLTQQPIATLSLSSGTTE 120

Query: 118 GRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTA 177
           GRQKYVPFT+HSSQTTLQIF LAAAYRSRVYPI+EGG+ILE IYSSKQFKTKGGLT GTA
Sbjct: 121 GRQKYVPFTRHSSQTTLQIFSLAAAYRSRVYPIKEGGKILELIYSSKQFKTKGGLTVGTA 180

Query: 178 TTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAY 237
           TTHYYASEEFKIKQEKTKSFTCSP EVIS G+YKQ+TYCHLLLGLFF DQVEFITSTFAY
Sbjct: 181 TTHYYASEEFKIKQEKTKSFTCSPPEVISGGDYKQTTYCHLLLGLFFYDQVEFITSTFAY 240

Query: 238 SIVQAFTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKL 297
           SIVQAF +FEE W++IC D+REGSLSS RITLPKMRKAVLD ISP P LAS+IE  CKKL
Sbjct: 241 SIVQAFISFEELWKEICDDIREGSLSS-RITLPKMRKAVLDIISPSPCLASRIEDNCKKL 299

Query: 298 ESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVD 357
           E+LDW GL+PKLWPNAKYVYSIMTGSMQ YL+KLRHYA  L LVSADYGSTESWIGVNVD
Sbjct: 300 ENLDWLGLIPKLWPNAKYVYSIMTGSMQPYLRKLRHYACGLALVSADYGSTESWIGVNVD 359

Query: 358 PSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLT 417
           PSLPPE+VTFAV+PTFSYFEF+P++R+ +D +SAIDDFIEDEPVPLS+VKLGQEYEIVLT
Sbjct: 360 PSLPPENVTFAVVPTFSYFEFMPLYRQNKDFSSAIDDFIEDEPVPLSKVKLGQEYEIVLT 419

Query: 418 SFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLN 477
           +FTGLYRYRLGDVVEVAGFHKGTPKLNF+CRRKLILTVNIDKNTEKDLQLVV+RGSQLL+
Sbjct: 420 TFTGLYRYRLGDVVEVAGFHKGTPKLNFICRRKLILTVNIDKNTEKDLQLVVERGSQLLS 479

Query: 478 KTGAELVDFTSHADIVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTN 537
           KT AELVDFTSHAD+ NQPGHYIIYWEIKG+VEEGVL +CC EMD SFVD GYVVSR+ +
Sbjct: 480 KTRAELVDFTSHADVGNQPGHYIIYWEIKGEVEEGVLGECCREMDESFVDHGYVVSRKAH 539

Query: 538 SIGPLELCIVKRGAFRMILDYFVGNGAALSQFKTPRCTSNQVLVRILNDWTIKRFHSTAY 597
           SIGPLELCIV+RG F+ ILD+F+GNGAALSQFKTPRCTSNQVL+RILN  TIKRFHSTAY
Sbjct: 540 SIGPLELCIVERGTFKKILDHFIGNGAALSQFKTPRCTSNQVLLRILNVCTIKRFHSTAY 599

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|346680625\|gb\|AEO45116.1\| indole-3-acetic acid-amido synthetase GH3.5 [Betula platyphylla]	Back alignment and taxonomy information

>gi\|224127132\|ref\|XP_002329408.1\| GH3 family protein [Populus trichocarpa] gi\|222870458\|gb\|EEF07589.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225447231\|ref\|XP_002272560.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Vitis vinifera] gi\|297739258\|emb\|CBI28909.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|118487591\|gb\|ABK95621.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224124584\|ref\|XP_002319368.1\| GH3 family protein [Populus trichocarpa] gi\|222857744\|gb\|EEE95291.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356544912\|ref\|XP_003540891.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max]	Back alignment and taxonomy information

>gi\|356515202\|ref\|XP_003526290.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max]	Back alignment and taxonomy information

>gi\|356542133\|ref\|XP_003539525.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max]	Back alignment and taxonomy information

>gi\|356547024\|ref\|XP_003541918.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		598
TAIR\|locus:2125571		591	DFL2 "DWARF IN LIGHT 2" [Arabi	0.966	0.978	0.706	2e-223
UNIPROTKB\|Q6I581		581	GH3.5 "Probable indole-3-aceti	0.948	0.975	0.489	4.5e-153
UNIPROTKB\|Q53P49		613	GH3.12 "Probable indole-3-acet	0.802	0.783	0.449	6e-119
UNIPROTKB\|Q5NAZ7		462	GH3.3 "Probable indole-3-aceti	0.692	0.896	0.453	9.1e-100
TAIR\|locus:2131739		612	WES1 [Arabidopsis thaliana (ta	0.938	0.916	0.348	4.8e-94
TAIR\|locus:2043308		585	GH3.9 "AT2G47750" [Arabidopsis	0.936	0.957	0.350	9e-93
TAIR\|locus:2147314		612	DFL1 "DWARF IN LIGHT 1" [Arabi	0.939	0.918	0.339	8.1e-92
TAIR\|locus:2010484		609	GH3.17 [Arabidopsis thaliana (	0.941	0.924	0.335	1.5e-90
UNIPROTKB\|P0C0M3		591	GH3.11 "Probable indole-3-acet	0.923	0.934	0.347	2e-88
TAIR\|locus:2008134		573	AT1G48660 "AT1G48660" [Arabido	0.861	0.898	0.346	2.3e-87

TAIR\|locus:2125571 DFL2 "DWARF IN LIGHT 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2157 (764.4 bits), Expect = 2.0e-223, P = 2.0e-223
 Identities = 411/582 (70%), Positives = 482/582 (82%)

Query:    19 DIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVP 78
             D+I WFE++SENA +VQ ETLRRILE N  VEYL+K LG   ++ MD   +ETL+TSLVP
Sbjct:    10 DVIGWFEHVSENACKVQSETLRRILELNSGVEYLRKWLGTVDVEKMDDYTLETLFTSLVP 69

Query:    79 LASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFR 138
             + SHADL+PYIQRIADG+T+ LLTQEPIT LSLSSGTTEGRQKYVPFT+HS+QTTLQIFR
Sbjct:    70 IVSHADLDPYIQRIADGETSPLLTQEPITVLSLSSGTTEGRQKYVPFTRHSAQTTLQIFR 129

Query:   139 LAAAYRSRVYPIREGGRILEFIYSSKQFXXXXXXXXXXXXXHYYASEEFKIKQEKTKSFT 198
             L+AAYRSR YPIREGGRILEFIY+ K+F             HYYASEEFK KQE TKSFT
Sbjct:   130 LSAAYRSRFYPIREGGRILEFIYAGKEFKTLGGLTVGTATTHYYASEEFKTKQETTKSFT 189

Query:   199 CSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVR 258
             CSP+EVIS G++ Q TYCHLLLGL +S QVEF+ S F+Y+IVQAF+ FEE W++IC D++
Sbjct:   190 CSPQEVISGGDFGQCTYCHLLLGLHYSSQVEFVASAFSYTIVQAFSFFEEIWREICADIK 249

Query:   259 EGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLES-LDWFGLVPKLWPNAKYVY 317
             EG+LSS RITLPKMRKAVL  I P P LAS IE  C +LE+ L WFGL+ KLWPNAK++ 
Sbjct:   250 EGNLSS-RITLPKMRKAVLALIRPNPSLASHIEEICLELETNLGWFGLISKLWPNAKFIS 308

Query:   318 SIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFE 377
             SIMTGSM  YL KLRHYAG LPLVSADYGSTESWIGVNVDP LPPEDV+FAVIPTFSYFE
Sbjct:   309 SIMTGSMLPYLNKLRHYAGGLPLVSADYGSTESWIGVNVDPHLPPEDVSFAVIPTFSYFE 368

Query:   378 FIPIHRRKQDCNSAID-DFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVAGF 436
             FIP++RR+   +  ID DF+ED+PVPLSQVKLGQEYE+VLT+FTGLYRYRLGDVVEV  F
Sbjct:   369 FIPLYRRQNQSDICIDGDFVEDKPVPLSQVKLGQEYELVLTTFTGLYRYRLGDVVEVTSF 428

Query:   437 HKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNK-TGAELVDFTSHADIVNQ 495
             HKGTPKL+F+ RRKLILT+NIDKNTEKDLQ VVD+ SQLL++ T AE+VDFTSHAD++ +
Sbjct:   429 HKGTPKLSFIYRRKLILTINIDKNTEKDLQRVVDKASQLLSRSTRAEVVDFTSHADVIAR 488

Query:   496 PGHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMI 555
             PGHY+IYWEI+G+ ++  L +CC EMD +FVD GYVVSRR NSIGPLEL +V+RG F  +
Sbjct:   489 PGHYVIYWEIRGEADDKALEECCREMDTAFVDYGYVVSRRMNSIGPLELRVVERGTFGKV 548

Query:   556 LDYFVGNGAALSQFKTPRCTSNQVLVRILNDWTIKRFHSTAY 597
              +  VG    L+QFKTPRCT+N V++ ILND TIKRF S+AY
Sbjct:   549 AERCVGKCGGLNQFKTPRCTTNSVMLDILNDSTIKRFRSSAY 590

GO:0005737 "cytoplasm" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=IEP;ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

UNIPROTKB\|Q6I581 GH3.5 "Probable indole-3-acetic acid-amido synthetase GH3.5" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53P49 GH3.12 "Probable indole-3-acetic acid-amido synthetase GH3.12" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5NAZ7 GH3.3 "Probable indole-3-acetic acid-amido synthetase GH3.3" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2043308 GH3.9 "AT2G47750" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2010484 GH3.17 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M3 GH3.11 "Probable indole-3-acetic acid-amido synthetase GH3.11" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2008134 AT1G48660 "AT1G48660" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6I581	GH35_ORYSJ	6, ., 3, ., 2, ., -	0.5008	0.9498	0.9776	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		598
pfam03321		513	pfam03321, GH3, GH3 auxin-responsive promoter	1e-172
PLN02620		612	PLN02620, PLN02620, indole-3-acetic acid-amido syn	1e-133
PLN02247		606	PLN02247, PLN02247, indole-3-acetic acid-amido syn	1e-129
PLN02249		597	PLN02249, PLN02249, indole-3-acetic acid-amido syn	1e-118

>gnl\|CDD\|217492 pfam03321, GH3, GH3 auxin-responsive promoter	Back alignment and domain information

 Score =  498 bits (1285), Expect = e-172
 Identities = 201/568 (35%), Positives = 296/568 (52%), Gaps = 70/568 (12%)

Query: 19  DIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVP 78
            +++  E  + NA EVQ E LR ILE+N D EY KK  G + I   D       +   VP
Sbjct: 1   KVLKEIELFTSNAVEVQEEVLREILERNADTEYGKK-YGFSGITSYDD------FKKRVP 53

Query: 79  LASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFR 138
           + ++ DL+PYI+RIA+G+  S+L   PIT  +LSSGTT G+ K++P T    +    +  
Sbjct: 54  VVTYEDLKPYIERIANGEP-SILWPGPITYFALSSGTTGGKSKFIPVTDELLERFHFLGA 112

Query: 139 LAAA--YRSRVYPIRE---GGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEK 193
           LA    Y +   P          L   +   + KT GG+ AG  +T  Y +  F  K   
Sbjct: 113 LAVLLLYLNNNPPGLFFEGKSLGLGGSFVKPELKTPGGIPAGDLSTILYRNLPFWFK--- 169

Query: 194 TKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDI 253
                 SP+EVI   +  QS YC LL GL   + V  I+   A+ +V      E+ W+++
Sbjct: 170 ---LYTSPDEVILCIDDWQSKYCALLCGLI-REDVGRISGVPAWMLVLLIRFLEKHWKEL 225

Query: 254 CIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNA 313
           C D+R G+L                   P P LA  IE  C K+        + +LWPN 
Sbjct: 226 CTDIRTGTLR------------------PNPELADLIEQECSKI--------IKELWPNL 259

Query: 314 KYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTF 373
           KYV+    GSM+ Y  KL    G LPL S  Y ++E + G+N+DP    EDV++ ++P  
Sbjct: 260 KYVFVWGGGSMEPYRPKLEKLLGGLPLYSETYAASEGFFGINLDP----EDVSYTLMPNS 315

Query: 374 SYFEFIPIHRRKQDCNSAIDDFIEDEP--VPLSQVKLGQEYEIVLTSFTGLYRYRLGDVV 431
            +FEFIP+           D+  +++P  V L +V+LG+ YE+V+T+F GLYRYR+GDVV
Sbjct: 316 GFFEFIPV-----------DEDGDEDPKIVDLVEVELGKNYELVITTFAGLYRYRIGDVV 364

Query: 432 EVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHAD 491
            V GF+  TP+  FV R K +L++  +K TE++L+  V      L  TG E+V++TS  D
Sbjct: 365 RVTGFYNYTPQFEFVGRTKHVLSLFGEKLTEEELEKAVKN---ALESTGLEIVEYTSAPD 421

Query: 492 IVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDVSF-VDPGYVVSRRTNSIGPLELCIVKRG 550
              +PGHY+ YWE++   E  VL +C   +D +   +  Y  +R   S+GPLE+ +V  G
Sbjct: 422 TSTEPGHYVHYWELEFKPE--VLEECARALDEALQENSDYRRAREKGSLGPLEIRVVPPG 479

Query: 551 AFRMILDYFVG-NGAALSQFKTPRCTSN 577
            F   +  F G  G ++ Q+K PR +  
Sbjct: 480 TFYEWMKAFKGKLGGSIGQYKVPRLSKE 507

Length = 513

>gnl\|CDD\|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		598
PLN02620		612	indole-3-acetic acid-amido synthetase	100.0
PLN02247		606	indole-3-acetic acid-amido synthetase	100.0
PLN02249		597	indole-3-acetic acid-amido synthetase	100.0
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.96
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.95
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.93
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.87
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	99.5
PRK00174		637	acetyl-CoA synthetase; Provisional	99.48
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	99.47
PRK09274		552	peptide synthase; Provisional	99.46
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.46
PRK07529		632	AMP-binding domain protein; Validated	99.45
PTZ00237		647	acetyl-CoA synthetase; Provisional	99.42
PRK06060		705	acyl-CoA synthetase; Validated	99.41
PLN02574		560	4-coumarate--CoA ligase-like	99.41
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.4
PRK07514		504	malonyl-CoA synthase; Validated	99.39
PRK04319		570	acetyl-CoA synthetase; Provisional	99.39
PLN02654		666	acetate-CoA ligase	99.38
PRK07788		549	acyl-CoA synthetase; Validated	99.38
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	99.37
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.37
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	99.36
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.36
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	99.36
PRK06164		540	acyl-CoA synthetase; Validated	99.35
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	99.35
PLN03051		499	acyl-activating enzyme; Provisional	99.34
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	99.33
PLN02860		563	o-succinylbenzoate-CoA ligase	99.33
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	99.33
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	99.33
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	99.33
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	99.32
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	99.32
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.32
PRK06145		497	acyl-CoA synthetase; Validated	99.32
PRK09088		488	acyl-CoA synthetase; Validated	99.32
PRK05852		534	acyl-CoA synthetase; Validated	99.31
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.31
PRK08316		523	acyl-CoA synthetase; Validated	99.31
PRK07638		487	acyl-CoA synthetase; Validated	99.31
PLN02246		537	4-coumarate--CoA ligase	99.29
PRK12583		558	acyl-CoA synthetase; Provisional	99.28
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.28
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	99.28
PRK13382		537	acyl-CoA synthetase; Provisional	99.28
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	99.27
PLN02614		666	long-chain acyl-CoA synthetase	99.27
PRK07867		529	acyl-CoA synthetase; Validated	99.27
PRK06839		496	acyl-CoA synthetase; Validated	99.27
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.27
PRK10946		536	entE enterobactin synthase subunit E; Provisional	99.26
PLN02736		651	long-chain acyl-CoA synthetase	99.26
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.26
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	99.26
PRK12467		3956	peptide synthase; Provisional	99.25
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	99.25
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	99.25
PRK07787		471	acyl-CoA synthetase; Validated	99.25
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.25
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.24
PRK07470		528	acyl-CoA synthetase; Validated	99.24
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	99.23
PRK13383		516	acyl-CoA synthetase; Provisional	99.22
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.22
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	99.22
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.22
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	99.21
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	99.21
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	99.21
PRK08315		559	AMP-binding domain protein; Validated	99.21
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.2
PLN02330		546	4-coumarate--CoA ligase-like 1	99.2
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.2
PLN02861		660	long-chain-fatty-acid-CoA ligase	99.2
PRK12467		3956	peptide synthase; Provisional	99.19
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	99.19
PRK12316		5163	peptide synthase; Provisional	99.18
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	99.18
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	99.17
PRK13388		540	acyl-CoA synthetase; Provisional	99.16
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	99.15
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	99.15
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	99.14
PTZ00342		746	acyl-CoA synthetase; Provisional	99.14
PLN03052		728	acetate--CoA ligase; Provisional	99.13
PRK12316		5163	peptide synthase; Provisional	99.13
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	99.13
PRK08308		414	acyl-CoA synthetase; Validated	99.12
PRK06188		524	acyl-CoA synthetase; Validated	99.12
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	99.11
PRK05691		4334	peptide synthase; Validated	99.1
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	99.1
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	99.09
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.08
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.08
PRK05857		540	acyl-CoA synthetase; Validated	99.08
PRK05691		4334	peptide synthase; Validated	99.08
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	99.08
PTZ00216		700	acyl-CoA synthetase; Provisional	99.07
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.07
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	99.06
PRK05850		578	acyl-CoA synthetase; Validated	99.05
PRK08180		614	feruloyl-CoA synthase; Reviewed	99.05
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	99.05
PLN02430		660	long-chain-fatty-acid-CoA ligase	99.04
PRK06018		542	putative acyl-CoA synthetase; Provisional	99.03
PRK12582		624	acyl-CoA synthetase; Provisional	99.03
PRK09192		579	acyl-CoA synthetase; Validated	99.02
PRK06178		567	acyl-CoA synthetase; Validated	99.02
PRK07798		533	acyl-CoA synthetase; Validated	99.01
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.0
PLN03102		579	acyl-activating enzyme; Provisional	99.0
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	98.92
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	98.92
PRK08162		545	acyl-CoA synthetase; Validated	98.87
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	98.84
PRK13390		501	acyl-CoA synthetase; Provisional	98.74
PRK13391		511	acyl-CoA synthetase; Provisional	98.71
PLN02479		567	acetate-CoA ligase	98.69
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	98.65
PRK07868		994	acyl-CoA synthetase; Validated	98.63
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	98.59
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	98.56
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	98.49
PF04443		365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.19
PTZ00297		1452	pantothenate kinase; Provisional	96.37
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	96.18
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.08
PRK09188		365	serine/threonine protein kinase; Provisional	92.28

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

Probab=100.00  E-value=2.4e-128  Score=1064.31  Aligned_cols=573  Identities=36%  Similarity=0.689  Sum_probs=534.0

Q ss_pred             CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHhHhhhcCccCCCCCCCcChHHHhhcCCCCCcccchHHHHHH
Q 007568           13 GNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRI   92 (598)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~g~~~i~~~edF~~~vPl~~Yed~~p~ieR~   92 (598)
                      +++.+.+.++.++..++||.++|+++|++||++|++|+|||+|       ||++|+++++||++|||++|||++|||+||
T Consensus        17 ~~~~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~-------~f~~i~~~~~F~~~VPv~~Yedl~pyI~Ri   89 (612)
T PLN02620         17 LAEKNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRH-------GLNGRTDRETFKKVMPVITYEDIQPDINRI   89 (612)
T ss_pred             cccchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhc-------CCCCCCCHHHHHHhCCCccHHHhHHHHHHH
Confidence            3444467789999999999999999999999999999999999       999999999999999999999999999999


Q ss_pred             hcCCCCCCccccccceeecccccCCCcccccccChhhHHHHHHHHHHHHHHHHhcCC-CCCCCceEEEeccCCccccCCC
Q 007568           93 ADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTKGG  171 (598)
Q Consensus        93 ~~Ge~~~ll~~~~i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~P-~~~~gk~l~~~~~~~~~~t~~G  171 (598)
                      ++||.++|||++||.+|++|||||+|++|+||+|+++++.++.++.+|..++++++| +. .||.|++++.+.+.+|++|
T Consensus        90 ~~Ge~s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~-~Gk~~~~~~~~~~~~T~~G  168 (612)
T PLN02620         90 ANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLE-KGKGMYFLFIKSEAKTPGG  168 (612)
T ss_pred             HcCCCCCccCCCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcc-cCcEEEEEecccCccCCCC
Confidence            999977999999999999999999889999999999999888889999999999888 77 8999999999999999999


Q ss_pred             ceEeccccccccchhHhhhhhhhhcccCChhhhhccCChHHHHHHHHHhcccCCCCceEEEecchhHHHHHHHHHHHhHH
Q 007568          172 LTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQ  251 (598)
Q Consensus       172 ip~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~l~~~~~~le~~w~  251 (598)
                      ||+|++|+.++++.+|+.++......|++|.++++++|..++|||||||+|.++++|..++++|+++|+.++++|+++|+
T Consensus       169 ip~g~~st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~  248 (612)
T PLN02620        169 LVARPVLTSYYKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWT  248 (612)
T ss_pred             cccccccchhhhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHH
Confidence            99999999999999998888777778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccccCCCCceeEEEEccChHHHHHHH
Q 007568          252 DICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKL  331 (598)
Q Consensus       252 el~~dI~~g~~~~~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lwP~l~~i~~~~~g~~~~y~~~l  331 (598)
                      +||+||++|+++ .+++++++|+++.+.|+|||++|+.|+.+|.+ +  +|.|++++|||||++|+||++|+|++|.+.|
T Consensus       249 ~L~~DI~~G~ls-~~itd~~~R~av~~~L~p~pelA~~i~~~c~~-~--~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L  324 (612)
T PLN02620        249 LLCRDIRTGTID-SQITDPSVREAVMKILKPDPKLADFVEAECRK-E--SWQGIITRLWPNTKYVDVIVTGTMSQYIPTL  324 (612)
T ss_pred             HHHHHHhcCCCC-ccCCCHHHHHHHHhhcCCCHHHHHHHHHHhcc-c--cccCcHHHhCCCCcEEEEECCCCHHHHHHHH
Confidence            999999999999 88999999999999999999999999999998 5  8999999999999999999999999999999


Q ss_pred             HHHhCCCCeecCcccCCCcceeecCCCCCCCCCcceeeecCceEEEEEecCCcccCCC-----CCCCCCCCCccccCCCC
Q 007568          332 RHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCN-----SAIDDFIEDEPVPLSQV  406 (598)
Q Consensus       332 ~~~~g~~~i~~~~ygaSE~~i~~~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~-----~~~~~~~~~~~l~~~ev  406 (598)
                      +.|+||+|+++.+|+||||++|+|++|.|+++...|.+.|+.+||||||+++.+....     ...+..+++++|+++||
T Consensus       325 ~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev  404 (612)
T PLN02620        325 DYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDV  404 (612)
T ss_pred             HHHcCCCccccccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHHHc
Confidence            9999999999999999999999999999988888999999999999999875321000     00011245778999999


Q ss_pred             CCCCeEEEEEcccCceeccccCCEEEEccccCCCCEEEEEeecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeee
Q 007568          407 KLGQEYEIVLTSFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDF  486 (598)
Q Consensus       407 e~G~~yeLVvTt~~Gl~RYr~GDvv~v~g~~~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f  486 (598)
                      +.|++|||||||++||||||+||||+|+||||++|+|+|+||.+.+++++|||++|++|..||.++...|...+++|+||
T Consensus       405 ~~G~~YelvvTt~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dy  484 (612)
T PLN02620        405 KLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDASLTEY  484 (612)
T ss_pred             cCCCeEEEEEEecCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcccCceeeeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999998775568999999


Q ss_pred             EEeeccCCCCceEEEEEEec--CC--CccchHHHHHHHHHhhcCCchhHhhhhcC-CcCCeEEEEeccchHHHHHHHHhc
Q 007568          487 TSHADIVNQPGHYIIYWEIK--GD--VEEGVLNQCCHEMDVSFVDPGYVVSRRTN-SIGPLELCIVKRGAFRMILDYFVG  561 (598)
Q Consensus       487 ~~~~~~~~~~~~Y~~~vE~~--~~--~~~~~l~~~~~~ld~~l~n~~Y~~~R~~g-~l~p~~v~~v~~g~f~~~~~~~~~  561 (598)
                      ++++|.+..||||++|||+.  ++  ++...+++||..||++| |.+|+.+|..+ +|+|++|++|++|||+.+++++++
T Consensus       485 ts~~d~~~~PghYvl~~El~~~~~~~~~~~~l~~cc~~lE~~L-n~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~  563 (612)
T PLN02620        485 TSYADTSTIPGHYVLFWELCLNGSTPIPPSVFEDCCLTIEESL-NSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAIS  563 (612)
T ss_pred             EeccccCCCCCceEEEEEEecCCCCCCCHHHHHHHHHHHHHHh-CHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHH
Confidence            99999888999999999983  22  35668999999999998 99999999986 599999999999999999999999


Q ss_pred             CCCCCCCCCCCcccCCHHHHHHHhhccccccccccCC
Q 007568          562 NGAALSQFKTPRCTSNQVLVRILNDWTIKRFHSTAYC  598 (598)
Q Consensus       562 ~G~~~~Q~K~Pr~~~~~~~~~~l~~~~~~~~~~~~~~  598 (598)
                      +|++.+|||+|||+++++++++|+++|+++|+|++++
T Consensus       564 ~G~s~~QyK~Pr~v~~~~~~~~l~~~v~~~~~s~~~~  600 (612)
T PLN02620        564 LGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCP  600 (612)
T ss_pred             cCCccccccCceEecCHHHHHHHHhhhheeeccccCC
Confidence            9999999999999999999999999999999999864

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria	Back alignment and domain information

>PTZ00297 pantothenate kinase; Provisional	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>PRK09188 serine/threonine protein kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		598
4epl_A		581	Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J		1e-162
4b2g_A		609	Crystal Structure Of An Indole-3-acetic Acid Amido		5e-98
4ewv_A		581	Crystal Structure Of Gh3.12 In Complex With Ampcpp		2e-96
4eq4_A		581	Crystal Structure Of Seleno-Methionine Derivatized		9e-93

>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581

Back alignment and structure

Iteration: 1

Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust. Identities = 271/580 (46%), Positives = 393/580 (67%), Gaps = 19/580 (3%) Query: 20 IIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPL 79 +I F+ ++ NA +VQ++TL+ IL +N YL+ G + +A + E + S+VPL Sbjct: 19 VIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQN-CG----LNGNATDPEEAFKSMVPL 73 Query: 80 ASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRL 139 + +LEPYI+R+ DGDT+ +LT P+ +SLSSGT++GR K++PFT + TLQ+FR Sbjct: 74 VTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRT 133 Query: 140 AAAYRSRVYPIREGGRILEFIYSSKQFXXXXXXXXXXXXXHYYASEEFKIKQEKTKSFTC 199 A A+R+R +PI + G+ L+FI+SSKQ+ + Y + FK + S +C Sbjct: 134 AFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSC 193 Query: 200 SPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVRE 259 SP+EVI S + Q+ YCHLL G+ F DQV+++ + FA+ +V AF FE+ W++I D+++ Sbjct: 194 SPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKD 253 Query: 260 GSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSI 319 G LS+ RIT+P +R A+ ++P P LA I C L +W+GL+P L+PNAKYVY I Sbjct: 254 GVLSN-RITVPSVRTAMSKLLTPNPELAETIRTKCMSLS--NWYGLIPALFPNAKYVYGI 310 Query: 320 MTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFI 379 MTGSM+ Y+ KLRHYAGDLPLVS DYGS+E WI NV P L PE+ TFAVIP YFEF+ Sbjct: 311 MTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFL 370 Query: 380 PIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVAGFHKG 439 P+ + E++PV L+QVK+G+EYE+V+T++ GLYRYRLGDVV+V GF+ Sbjct: 371 PVSETGEG---------EEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNN 421 Query: 440 TPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGHY 499 TP+L F+CRR LIL++NIDKNTE+DLQL V+ ++ L++ E++DF+S+ D+ PGHY Sbjct: 422 TPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHY 481 Query: 500 IIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILDYF 559 I+WEI G+ E VL CC+ +D +F+D GYV SR+ +IG LEL +V +G FR I ++F Sbjct: 482 AIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHF 541 Query: 560 VGNGAALSQFKTPRCT--SNQVLVRILNDWTIKRFHSTAY 597 +G G++ QFK PRC SN +++IL + + + STA+ Sbjct: 542 LGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581

PyMOL of 4epl

>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609

Back alignment and structure

>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581

Back alignment and structure

>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		598
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	1e-141
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	1e-127
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581	Back alignment and structure

 Score =  422 bits (1084), Expect = e-141
 Identities = 276/581 (47%), Positives = 398/581 (68%), Gaps = 21/581 (3%)

Query: 20  IIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKR-LGDTKIQDMDACEMETLYTSLVP 78
           +I  F+ ++ NA +VQ++TL+ IL +N    YL+   L        +A      + S+VP
Sbjct: 19  VIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEA------FKSMVP 72

Query: 79  LASHADLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFR 138
           L +  +LEPYI+R+ DGDT+ +LT  P+  +SLSSGT++GR K++PFT    + TLQ+FR
Sbjct: 73  LVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFR 132

Query: 139 LAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFT 198
            A A+R+R +PI + G+ L+FI+SSKQ+ + GG+  GTATT+ Y +  FK   +   S +
Sbjct: 133 TAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPS 192

Query: 199 CSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVR 258
           CSP+EVI S +  Q+ YCHLL G+ F DQV+++ + FA+ +V AF  FE+ W++I  D++
Sbjct: 193 CSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIK 252

Query: 259 EGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYS 318
           +G LS+ RIT+P +R A+   ++P P LA  I   C  +   +W+GL+P L+PNAKYVY 
Sbjct: 253 DGVLSN-RITVPSVRTAMSKLLTPNPELAETIRTKC--MSLSNWYGLIPALFPNAKYVYG 309

Query: 319 IMTGSMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEF 378
           IMTGSM+ Y+ KLRHYAGDLPLVS DYGS+E WI  NV P L PE+ TFAVIP   YFEF
Sbjct: 310 IMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEF 369

Query: 379 IPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGLYRYRLGDVVEVAGFHK 438
           +P+               E++PV L+QVK+G+EYE+V+T++ GLYRYRLGDVV+V GF+ 
Sbjct: 370 LPVSE---------TGEGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYN 420

Query: 439 GTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHADIVNQPGH 498
            TP+L F+CRR LIL++NIDKNTE+DLQL V+  ++ L++   E++DF+S+ D+   PGH
Sbjct: 421 NTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH 480

Query: 499 YIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILDY 558
           Y I+WEI G+  E VL  CC+ +D +F+D GYV SR+  +IG LEL +V +G FR I ++
Sbjct: 481 YAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEH 540

Query: 559 FVGNGAALSQFKTPRC--TSNQVLVRILNDWTIKRFHSTAY 597
           F+G G++  QFK PRC   SN  +++IL +  +  + STA+
Sbjct: 541 FLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581

PyMOL of 4epl

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		598
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	100.0
4b2g_A		609	GH3-1 auxin conjugating enzyme; signaling protein,	100.0
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	100.0
3qov_A		436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.9
2y27_A		437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.89
2y4o_A		443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.89
3hgu_A		369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.63
3etc_A		580	AMP-binding protein; adenylate-forming acyl-COA sy	99.58
2d1s_A		548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.57
4fuq_A		503	Malonyl COA synthetase; ANL superfamily, methylma	99.56
3ni2_A		536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.55
3fce_A		512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.54
3e7w_A		511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.53
3nyq_A		505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.52
1mdb_A		539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.51
1t5h_X		504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.5
3g7s_A		549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.5
3l8c_A		521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.5
3kxw_A		590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.48
3ivr_A		509	Putative long-chain-fatty-acid COA ligase; structu	99.47
2v7b_A		529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.47
1pg4_A		652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.46
3rg2_A		617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.46
3r44_A		517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.46
3c5e_A		570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.45
3gqw_A		576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.44
3rix_A		550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.44
1ry2_A		663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.43
3o83_A		544	Peptide arylation enzyme; ligase, adenylation of 2	99.42
3ite_A		562	SIDN siderophore synthetase; ligase, non-ribosomal	99.42
3ipl_A		501	2-succinylbenzoate--COA ligase; structural genomic	99.42
1amu_A		563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.41
4gr5_A		570	Non-ribosomal peptide synthetase; MBTH-like domain	99.36
4dg8_A		620	PA1221; ANL superfamily, adenylation domain, pepti	99.36
4gs5_A		358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.35
3tsy_A		979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.34
1v25_A		541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.31
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.25
3t5a_A		480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	98.5
3lax_A		109	Phenylacetate-coenzyme A ligase; structural genomi	97.26
3gxs_A		109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	97.08

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}	Back alignment and structure

Probab=100.00  E-value=1.8e-128  Score=1073.97  Aligned_cols=565  Identities=49%  Similarity=0.911  Sum_probs=521.7

Q ss_pred             CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHhHhhhcCccCCCCCCC-cChH-HHhhcCCCCCcccchHHHHH
Q 007568           14 NNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDAC-EMET-LYTSLVPLASHADLEPYIQR   91 (598)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~~~~~~~~g~~~i-~~~e-dF~~~vPl~~Yed~~p~ieR   91 (598)
                      .+.+.+.++.|++.++||.++|+++|++||++|++|+|||+|       ||++| ++++ |||++|||++|||++|||||
T Consensus        13 ~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-------gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeR   85 (581)
T 4epl_A           13 TFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNC-------GLNGNATDPEEAFKSMVPLVTDVELEPYIKR   85 (581)
T ss_dssp             CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTT-------TCC----CHHHHHHHHSCCBCHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhc-------CCCcccCCHHHHHHHhCCCccHHHHHHHHHH
Confidence            345677789999999999999999999999999999999999       99999 9999 99999999999999999999


Q ss_pred             HhcCCCCCCccccccceeecccccCCCcccccccChhhHHHHHHHHHHHHHHHHhcCCCCCCCceEEEeccCCccccCCC
Q 007568           92 IADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGG  171 (598)
Q Consensus        92 ~~~Ge~~~ll~~~~i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~P~~~~gk~l~~~~~~~~~~t~~G  171 (598)
                      |++||.++|||++||.+|++|||||+|++|+||+|+++++.+++++.+|..++++..++...||.|+|.+++.+.+|++|
T Consensus        86 i~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~~p~l~~~Gk~L~l~~~s~~~~t~~G  165 (581)
T 4epl_A           86 MVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGG  165 (581)
T ss_dssp             HHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCCCTTCEEEEECCCCCCEECTTS
T ss_pred             HHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhhCCccccCCcEEEEeecCCcccCCCC
Confidence            99999889999999999999999999999999999999999877788888888773334325899998889999999999


Q ss_pred             ceEeccccccccchhHhhhhhhhhcccCChhhhhccCChHHHHHHHHHhcccCCCCceEEEecchhHHHHHHHHHHHhHH
Q 007568          172 LTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQ  251 (598)
Q Consensus       172 ip~g~~S~~~~~~~~f~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~~L~~~~~l~~i~~~f~~~l~~~~~~le~~w~  251 (598)
                      +|+|++|++++++.+|+..|.|+...|++|.+++.++|..+++||||||||.++++|.+|+++||++|+.+++.|+++|+
T Consensus       166 i~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We  245 (581)
T 4epl_A          166 VPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWE  245 (581)
T ss_dssp             CEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             ceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCcHHHHHhhhccCCCCHHHHHHHHHHhcccccCCccCcccccCCCCceeEEEEccChHHHHHHH
Q 007568          252 DICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKL  331 (598)
Q Consensus       252 el~~dI~~g~~~~~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lwP~l~~i~~~~~g~~~~y~~~l  331 (598)
                      ++|+||++|+++ ++++++++|+++++.|+|+|++|++|+++|.+.+  +|.|++++|||||++|.||++|+|.+|++++
T Consensus       246 ~l~~dI~~gtl~-~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~--~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l  322 (581)
T 4epl_A          246 EIVTDIKDGVLS-NRITVPSVRTAMSKLLTPNPELAETIRTKCMSLS--NWYGLIPALFPNAKYVYGIMTGSMEPYVPKL  322 (581)
T ss_dssp             HHHHHHHHTCCC-TTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSS--TTTTHHHHHCTTCCCEEEECSGGGGGGHHHH
T ss_pred             HHHHHHHhcCCC-cCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--ccccCHHHhCCCCceEEEEeCCChHHHHHHH
Confidence            999999999999 8899999999999999999999999999998711  3999999999999999999999999999999


Q ss_pred             HHHhCCCCeecCcccCCCcceeecCCCCCCCCCcceeeecCceEEEEEecCCcccCCCCCCCCCCCCccccCCCCCCCCe
Q 007568          332 RHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQE  411 (598)
Q Consensus       332 ~~~~g~~~i~~~~ygaSE~~i~~~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~l~~~eve~G~~  411 (598)
                      ++++|++|+++.+|+||||++|+|++|.++++..+|+++|+.+||||||+++.++         +++++++++|||+|++
T Consensus       323 ~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~---------~~~~~v~l~eve~G~~  393 (581)
T 4epl_A          323 RHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGE---------GEEKPVGLTQVKIGEE  393 (581)
T ss_dssp             HHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC----------------CCCEEGGGCCTTCE
T ss_pred             HHHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccccC---------CCCceeeHHHcCCCCe
Confidence            9999999999999999999999999999988778999999999999999886543         3578999999999999


Q ss_pred             EEEEEcccCceeccccCCEEEEccccCCCCEEEEEeecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEeec
Q 007568          412 YEIVLTSFTGLYRYRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSHAD  491 (598)
Q Consensus       412 yeLVvTt~~Gl~RYr~GDvv~v~g~~~~~P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~  491 (598)
                      |||||||.+||||||+||+|+|+||+|++|+|+|+||.+++||++||||+|++|+.||.++++.|..+|+.|.||++.+|
T Consensus       394 YelviTt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d  473 (581)
T 4epl_A          394 YEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYID  473 (581)
T ss_dssp             EEEEEESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred             EEEEEeeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999877678999999999998


Q ss_pred             cCCCCceEEEEEEecCCCccchHHHHHHHHHhhcCCchhHhhhhcCCcCCeEEEEeccchHHHHHHHHhcCCCCCCCCCC
Q 007568          492 IVNQPGHYIIYWEIKGDVEEGVLNQCCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKRGAFRMILDYFVGNGAALSQFKT  571 (598)
Q Consensus       492 ~~~~~~~Y~~~vE~~~~~~~~~l~~~~~~ld~~l~n~~Y~~~R~~g~l~p~~v~~v~~g~f~~~~~~~~~~G~~~~Q~K~  571 (598)
                      .+..||||++|||+.+.++.+.+++||..||++|.|++|+.+|..|+|+||+|++|++|+|++|+++++++|++++|||+
T Consensus       474 ~~~~p~hyv~~wE~~~~~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~  553 (581)
T 4epl_A          474 VSTDPGHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKM  553 (581)
T ss_dssp             CSSSSCEEEEEEEESSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CC
T ss_pred             CCCCCCcEEEEEeecCCCCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCC
Confidence            88889999999999776776789999999999988999999999999999999999999999999999999999999999


Q ss_pred             Cccc--CCHHHHHHHhhccccccccccC
Q 007568          572 PRCT--SNQVLVRILNDWTIKRFHSTAY  597 (598)
Q Consensus       572 Pr~~--~~~~~~~~l~~~~~~~~~~~~~  597 (598)
                      |||+  ++++++++|+++|+++|+|+++
T Consensus       554 PR~~~~~~~~~~~~L~~~v~~~~~s~~~  581 (581)
T 4epl_A          554 PRCVKPSNAKVLQILCENVVSSYFSTAF  581 (581)
T ss_dssp             CSSCCTTCHHHHHHHHTTEEEEEECCCC
T ss_pred             CeeecCCCHHHHHHHHhcccccccCCCC
Confidence            9999  9999999999999999999875

PyMOL of 4epl

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}	Back alignment and structure

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*	Back alignment and structure

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*	Back alignment and structure

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*	Back alignment and structure

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}	Back alignment and structure

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*	Back alignment and structure

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}	Back alignment and structure

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*	Back alignment and structure

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*	Back alignment and structure

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*	Back alignment and structure

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*	Back alignment and structure

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*	Back alignment and structure

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*	Back alignment and structure

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A	Back alignment and structure

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*	Back alignment and structure

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*	Back alignment and structure

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*	Back alignment and structure

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0	Back alignment and structure

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}	Back alignment and structure

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*	Back alignment and structure

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}	Back alignment and structure

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A	Back alignment and structure

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*	Back alignment and structure

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A	Back alignment and structure

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1	Back alignment and structure

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*	Back alignment and structure

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}	Back alignment and structure

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}	Back alignment and structure

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1	Back alignment and structure

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A	Back alignment and structure

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*	Back alignment and structure

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}	Back alignment and structure

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}	Back alignment and structure

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A	Back alignment and structure

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		598
d1pg4a_		643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.45
d1lcia_		541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.31
d1amua_		514	Phenylalanine activating domain of gramicidin synt	99.23
d1ry2a_		640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.2
d1mdba_		536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	98.96
d1v25a_		534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	98.91
d3cw9a1		503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	98.8

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.45  E-value=2.1e-12  Score=144.01  Aligned_cols=226  Identities=12%  Similarity=0.089  Sum_probs=123.0

Q ss_pred             CCCCceeEEEEccC--hHHHHHHHHHHhC--CCCeecCcccCCCcc-eeecCCCCC---CCCCcceeeecCceEEEEEec
Q 007568          310 WPNAKYVYSIMTGS--MQHYLKKLRHYAG--DLPLVSADYGSTESW-IGVNVDPSL---PPEDVTFAVIPTFSYFEFIPI  381 (598)
Q Consensus       310 wP~l~~i~~~~~g~--~~~y~~~l~~~~g--~~~i~~~~ygaSE~~-i~~~~~~~~---~~~~~~~~l~~~~~~~EFip~  381 (598)
                      .++|++|  +.+|.  .....+.+.+.+|  +++++ +.||+||+. +.+...+..   .++..+. ..++. -+..++.
T Consensus       373 l~sLr~i--~~~G~pl~~~~~~~~~~~~g~~~~~i~-~~yG~TE~g~~~~~~~~~~~~~~~gs~G~-p~~g~-~v~ivd~  447 (643)
T d1pg4a_         373 RSSLRIL--GSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATR-PFFGV-QPALVDN  447 (643)
T ss_dssp             CTTCCEE--EEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTTC-CEEEECT
T ss_pred             CCceEEE--EEEeCCCCHHHHHHHHHHhCCCCceEE-EeechhhccceEEecCCCccCCCCCcccc-ccCCC-EEEEECC
Confidence            4678853  23343  4555666777765  58899 999999963 322211111   1111222 22332 2233332


Q ss_pred             CCcccCCCCCCCCCCCCccccCCCCCCCCeEEEEEccc-----Cceec----------------cccCCEEEEccccCCC
Q 007568          382 HRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF-----TGLYR----------------YRLGDVVEVAGFHKGT  440 (598)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt~-----~Gl~R----------------Yr~GDvv~v~g~~~~~  440 (598)
                                     +++     +++.|+.|||+|+..     .|+|.                |+|||+++++.    .
T Consensus       448 ---------------~g~-----~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----d  503 (643)
T d1pg4a_         448 ---------------EGH-----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----D  503 (643)
T ss_dssp             ---------------TCC-----BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----T
T ss_pred             ---------------CCC-----CCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECC----C
Confidence                           233     356899999999753     34442                88999999985    7


Q ss_pred             CEEEEEeecCceEeeceeecCHHHHHHHHHHHHhhhhccCCeeeeeEEe--eccCCCCceEEEEEEecCC--CccchHHH
Q 007568          441 PKLNFVCRRKLILTVNIDKNTEKDLQLVVDRGSQLLNKTGAELVDFTSH--ADIVNQPGHYIIYWEIKGD--VEEGVLNQ  516 (598)
Q Consensus       441 P~i~f~gR~~~~l~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~--~~~~~~~~~Y~~~vE~~~~--~~~~~l~~  516 (598)
                      ..+.|+||.+|+|+++|++|++.|||++|.+. +     +  +.+-+|+  ++.. ....-+.||.+..+  ++.+...+
T Consensus       504 G~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~-p-----~--V~eaaVvg~~d~~-~ge~~~a~Vv~~~~~~~~~~~~~~  574 (643)
T d1pg4a_         504 GYYWITGRVDDVLNVSGHRLGTAEIESALVAH-P-----K--IAEAAVVGIPHAI-KGQAIYAYVTLNHGEEPSPELYAE  574 (643)
T ss_dssp             SCEEEEEESSSEEEETTEEEEHHHHHHHHHHS-T-----T--EEEEEEEEEEETT-TEEEEEEEEEECTTCCCCHHHHHH
T ss_pred             ceEEEecccccEEEECCEEECHHHHHHHHHhC-C-----C--cceEEEEEEECCC-CCeEEEEEEEECCCCCCCHHHHHH
Confidence            89999999999999999999999999999753 2     2  2333332  2211 11233467776543  33333334


Q ss_pred             HHHHHHhhcCCchhHhhhhcCCcCCeEEEEecc------chH--HHHHHHHhcCCCCCCCCCCCcccCCHHHHHHHhh
Q 007568          517 CCHEMDVSFVDPGYVVSRRTNSIGPLELCIVKR------GAF--RMILDYFVGNGAALSQFKTPRCTSNQVLVRILND  586 (598)
Q Consensus       517 ~~~~ld~~l~n~~Y~~~R~~g~l~p~~v~~v~~------g~f--~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~  586 (598)
                      +.+.+.+.| . .|        -.|-.|.+|+.      |=.  ..+++.  ..|. ..+.+.+--+.|++.++.+.+
T Consensus       575 i~~~~~~~L-~-~~--------~vP~~i~~v~~lP~T~sGKi~R~~Lr~~--~~~~-~~~~~~~~t~~~p~~l~~~~~  639 (643)
T d1pg4a_         575 VRNWVRKEI-G-PL--------ATPDVLHWTDSLPKTRSGKIMRRILRKI--AAGD-TSNLGDTSTLADPGVVEKLLE  639 (643)
T ss_dssp             HHHHHHHHT-C-GG--------GCCSEEEECSCCCBCTTSCBCHHHHHHH--HHTC-----------CCTTHHHHHHH
T ss_pred             HHHHHHhhC-C-cc--------cCccEEEEECCCCCCCCcCccHHHHHHH--hcCC-ccccCCccccCChHHHHHHHH
Confidence            444454454 1 12        23445555542      321  122222  2332 223445556888888876653

PyMOL of d1pg4a_

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}	Back information, alignment and structure

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}	Back information, alignment and structure

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}	Back information, alignment and structure