Citrus Sinensis ID: 007580

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------
Protein Sequence
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHcHHHHHHcccHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccccccccHHcccHHcHccccccccccccccccccccccEEccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHcccccccccccEEEEccccHHccccccccccccccEEHccEEEEEccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccccccc
Coil and Loop (DISEMBL)
mgsreikspeslqetpatssshqrkKLSVYFIESDNrrmalgrgytggttpvnvhgkpiadlsktggWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMkvfmpnqdncdRISQllgscepaksWQMLYLYTVLYITgfgaagirpcvssfgadqfdersKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMlffigtplyrhrlpggsplTRVAQVLVAAFRKRHaafssseliglyevpgkhsaikgsgkiahtddfRCLDKAALELkedvinpspwklctvTQVEEVKTLVrlvpipacTIMLNVILTEFLTLSVQQAYTmnthmghprgasqlQRVGIGLAVSILSVIWAGIFERYRRNYAIshgyefsfltampdlSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSvtgnpkkgqpnwlaqnintgRFDYLYWLLAVLSVINFCAFLYSAYRYKYRseqkhgndyevmenklydspi
Flexible Loop (DISEMBL)
mgsreikspeslqetpatssshqrkkLSVYFIESDNRRMALGRgytggttpvnvhgkpiadlsktGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELkedvinpspwklctvtQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVtgnpkkgqpnWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRseqkhgndyevmenklydspi
Low Complexity Region (SEG)
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIgsayaalagglgcfaasILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Disordered region (IsUnstruct)
***************************SVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR*********************
Disordered Region (DISOPRED)
************************************************TTPVNVHGKPIA****TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR***********KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE******THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSEL**********************DDFRCLDKAA*************KLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK***********************
Disordered Region (DISEMBL)
************************KKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Disordered Region (DISPRO)
***************************S********************TTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHS***GSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	597	2.2.26 [Sep-21-2011]
Q9LYR6	624	Probable peptide/nitrate	yes	no	0.963	0.921	0.762	0.0
Q9M390	570	Peptide transporter PTR1	no	no	0.854	0.894	0.402	1e-119
Q9LFB8	570	Peptide transporter PTR5	no	no	0.862	0.903	0.393	1e-112
P46032	585	Peptide transporter PTR2	no	no	0.857	0.875	0.387	1e-107
Q93Z20	590	Probable peptide/nitrate	no	no	0.852	0.862	0.385	1e-103
Q84WG0	545	Probable peptide/nitrate	no	no	0.792	0.867	0.353	2e-90
Q9SX20	596	Probable nitrite transpor	no	no	0.864	0.865	0.349	6e-90
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.902	0.919	0.340	1e-87
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.897	0.920	0.342	2e-87
Q9SZY4	577	Nitrate transporter 1.4 O	no	no	0.864	0.894	0.360	1e-86

>sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1

 Score =  964 bits (2492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/614 (76%), Positives = 524/614 (85%), Gaps = 39/614 (6%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---------- 410
           WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+          
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420

Query: 411 ---------------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYR 443
                                      G+P GASQLQRVGIGLAVSI+SV WAG+FE YR
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480

Query: 444 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 503
           R+YAI +G+EF+FLT MPDL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540

Query: 504 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 563
           AYAALAGGLGCFAA+ILN+I+K+ T +      +WL+QNINTGRFD LYWLL +LS +NF
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNF 598

Query: 564 CAFLYSAYRYKYRS 577
           C FL+SA+RYKYR+
Sbjct: 599 CVFLWSAHRYKYRA 612

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  431 bits (1107), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/566 (40%), Positives = 332/566 (58%), Gaps = 56/566 (9%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V++H  P A+  KTG W A  FI GNE  ER+AY+G+  N+V ++   +++  A ++N V
Sbjct: 13  VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNV 71

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
            N+ G    + ++G F+ADAYLGRYWTIA F  IY++G+T +TL A++    P   N D 
Sbjct: 72  TNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD- 130

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                 +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K     FF
Sbjct: 131 ------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFF 183

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY S+ VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR + PGGS
Sbjct: 184 NWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGS 243

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           PLTR+ QV+VAAFRK        + + L+E     S IKGS K+ HTD+ +  DKAA+E 
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVES 302

Query: 352 KEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           + D I     +PW+LC+VTQVEE+K+++ L+P+ A  I+   + ++  T+ V Q  TM+ 
Sbjct: 303 QSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQ 362

Query: 409 HMG--------------------------------------HPRGASQLQRVGIGLAVSI 430
           HMG                                      + RG +QLQR+GIGL VSI
Sbjct: 363 HMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSI 422

Query: 431 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL 490
            ++I AG+ E  R +Y  +H    ++      +S +W + QY LIG AEVF  +G LEF 
Sbjct: 423 FAMITAGVLEVVRLDYVKTHN---AYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFF 479

Query: 491 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY 550
           Y++APDAM+S+ SA +     LG + +++L +++  +T   K G+P W+  N+N G  DY
Sbjct: 480 YDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKIT--KKNGKPGWIPDNLNRGHLDY 537

Query: 551 LYWLLAVLSVINFCAFLYSAYRYKYR 576
            ++LLA LS +NF  +L+ + RYKY+
Sbjct: 538 FFYLLATLSFLNFLVYLWISKRYKYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 323/572 (56%), Gaps = 57/572 (9%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           +++H KP A+ +KTG W A  FI G E  ER+AY+G+S N++ ++   M+     +S +V
Sbjct: 14  LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSV 72

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
           +N+ G   A+ ++G F+ADAYLGRYWTIA F  IY+AG+T +T+ A++    P    C  
Sbjct: 73  SNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT---CS- 128

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                G    A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K     FF
Sbjct: 129 -----GETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY  + VGA++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR + PGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           PLTR+ QV+VA+ RK        E + LYE     S+I GS K+ HT      DKAA+E 
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302

Query: 352 KED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           + D       S WKLCTVTQVEE+K L+RL+PI A  I+   + ++  T+ V Q  T++ 
Sbjct: 303 ESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQ 362

Query: 409 HM--------------------------------------GHPRGASQLQRVGIGLAVSI 430
           HM                                      GH RG +QLQR+GIGL +SI
Sbjct: 363 HMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISI 422

Query: 431 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL 490
            S++ AGI E  R NY  +H     +      ++ +W + QY L+G AEVF  +G LEF 
Sbjct: 423 FSMVSAGILEVARLNYVQTHNL---YNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFF 479

Query: 491 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY 550
           Y++APDAM+S+ SA +  A   G + ++ L +++  VT +   G+P W+A+N+N G  DY
Sbjct: 480 YDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRS--GGRPGWIAKNLNNGHLDY 537

Query: 551 LYWLLAVLSVINFCAFLYSAYRYKYRSEQKHG 582
            +WLLA LS +NF  +L+ A  Y Y+    H 
Sbjct: 538 FFWLLAGLSFLNFLVYLWIAKWYTYKKTTGHA 569

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  388 bits (996), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/565 (38%), Positives = 320/565 (56%), Gaps = 53/565 (9%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V+ +G P     KTG W A  FI GNE  ER+AY+G++ N++T++   +H+    ++  V
Sbjct: 30  VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
             + G    + ++G  LADAY GRYWTIA F+ IY  G++ +TL A++    P +  C  
Sbjct: 89  TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
           I     S  PA   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           P+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD + LDKAA+  
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           +E+  +    + W+LCTVTQVEE+K L+R+ PI A  I+ + +  +  T+ VQQ   MN 
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query: 409 HMGH-------------------------------------PRGASQLQRVGIGLAVSIL 431
            +G                                       +G +++QR+GIGL VS+L
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query: 432 SVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLY 491
            +  A I E  R + A   G   S   A   +S  W + QY ++G AEVF  +G LEF Y
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVES--GAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFY 498

Query: 492 EEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYL 551
           +++PDAM+S+ SA A L   LG + +S++ +++   T   + GQ  W++ N+N+G  DY 
Sbjct: 499 DQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT--TRNGQEGWISDNLNSGHLDYF 556

Query: 552 YWLLAVLSVINFCAFLYSAYRYKYR 576
           +WLLA LS++N   + +SA RYK +
Sbjct: 557 FWLLAGLSLVNMAVYFFSAARYKQK 581

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  377 bits (968), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 317/571 (55%), Gaps = 62/571 (10%)

Query: 33  ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
           E +N    L      G+  ++++G P +   KTG W A  FI GNE  ER+AY+G++ N+
Sbjct: 24  EVNNHLTGLSSTAEDGS--IDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80

Query: 93  VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
           +T+    +H+S   +++ V  + G    + ++G  +AD+Y GRYWTIA F+ IY  G+  
Sbjct: 81  ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140

Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
           +TL A++ V  P              C PA + Q    +T LY+   G  GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196

Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
           ADQFD+     +     FFN+FY S+ +G+ ++ TL+V++Q   GWG  F    + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
              FFIGTPLYR + PGGSP+TRV QVLVAA+RK        ++  LYE   K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSMIAGS 315

Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
            KI HTD ++ LDKAA+    E K    + +PWKLCTVTQVEEVKTL+R+ PI A  I+ 
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374

Query: 389 NVILTEFLTLSVQQAYTMNTHM-------------------------------------G 411
           +V+ ++  TL VQQ  +MN  +                                     G
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434

Query: 412 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 471
            P+G + LQR+GIGL +S+LS+  A I E  R   A           AM   S +W + Q
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQD-------FVAM---SIFWQIPQ 484

Query: 472 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 531
           Y L+GIAEVF  +G +EF Y+E+PDAM+S+ SA A L   +G + +S++ +++   T   
Sbjct: 485 YILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTA-- 542

Query: 532 KKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 562
             G+  W+  ++N G  DY +WLL  L ++N
Sbjct: 543 LGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  333 bits (855), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 299/563 (53%), Gaps = 90/563 (15%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           +++HG P      TG W A  FIF NE  ER+AY+G++ N++T+    +H++   ++  V
Sbjct: 31  IDIHGNPPLK-QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
             + G    + ++G  +ADAY GRYWTIA F+ IY  G+  +TL A++    P       
Sbjct: 90  MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKP------- 142

Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
            ++ +GS C PA   Q   L++ LY+   G  GI+PCVSSFGADQFD+     +     F
Sbjct: 143 -AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201

Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
           FN+FY ++ +GA V+ T++V+IQ  +GW   F    + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261

Query: 291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALE 350
           SP+T V QVLVAA+RK +            +VP + S  +G                   
Sbjct: 262 SPITSVCQVLVAAYRKSN-----------LKVP-EDSTDEGDA----------------- 292

Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
                 N +PWKLCTVTQVEEVK L+RLVPI A  I+ +V+ ++  TL VQQ   M   +
Sbjct: 293 ------NTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTI 346

Query: 411 -------------------------------------GHPRGASQLQRVGIGLAVSILSV 433
                                                G  +G ++LQR+GIGL VS+LS+
Sbjct: 347 GLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSL 406

Query: 434 IWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE 493
            +A I E  R   A     +      +  L+ +W + QY L+G A VF  VG +EF YE+
Sbjct: 407 TFAAIVETVRLQLA--RDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQ 464

Query: 494 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL-AQNINTGRFDYLY 552
           +PD+M+S+ SA+A L   LG + +S++ +++  ++     G+  W+ + NIN G  DY +
Sbjct: 465 SPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS-----GKDCWIPSDNINNGHLDYFF 519

Query: 553 WLLAVLSVINFCAFLYSAYRYKY 575
           WLL  L  +N   F++ + +Y +
Sbjct: 520 WLLVSLGSVNIPVFVFFSVKYTH 542

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  332 bits (850), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 200/572 (34%), Positives = 300/572 (52%), Gaps = 56/572 (9%)

Query: 53  NVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN 112
            +HG+P       GG I   FIF NE+ E++A  G   NM++++   +H     ++N + 
Sbjct: 15  QLHGRPN---RPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query: 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172
           NF G S  + +LG F+AD++ GR+WTI   + IY  G+T +T+ A +    P     + +
Sbjct: 72  NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query: 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232
                 C  A + Q+  LY  L +   G+ GIRPCV +FGADQFDE   +  T    +FN
Sbjct: 132 ------CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFN 185

Query: 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSP 292
           ++Y  +    ++A T++V+IQ   GWG   G   +AM +S + F  G  LYRH +P GSP
Sbjct: 186 WYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSP 245

Query: 293 LTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELK 352
            TR+ QV VAAFRKR     S   + LY      + I   GK+ HT     LDKAA+  +
Sbjct: 246 FTRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTE 304

Query: 353 EDVIN----PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           ED +     P+ W+L TV +VEE+K+++R+ PI A  I+L     +  T S+QQA TMN 
Sbjct: 305 EDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNR 364

Query: 409 HM--------------------------------------GHPRGASQLQRVGIGLAVSI 430
           H+                                      G  RG + L R+GIG  +SI
Sbjct: 365 HLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISI 424

Query: 431 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL 490
           ++ + AG  E  R++ AI HG      T +P +S  WL+ QY L G+AE F  +G LEF 
Sbjct: 425 IATLVAGFVEVKRKSVAIEHGLLDKPHTIVP-ISFLWLIPQYGLHGVAEAFMSIGHLEFF 483

Query: 491 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFD 549
           Y++AP++M+S  +A   +A  +G + +++L +++   +  P     NWL   N+N GR +
Sbjct: 484 YDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGS--NWLPDNNLNRGRLE 541

Query: 550 YLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 581
           Y YWL+ VL  +N   +L+ A  Y Y+  Q H
Sbjct: 542 YFYWLITVLQAVNLVYYLWCAKIYTYKPVQVH 573

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  324 bits (831), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 202/594 (34%), Positives = 318/594 (53%), Gaps = 55/594 (9%)

Query: 41  LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
           +G  YT   T V++ G  +   S+TG W A  F+   E+ ERMAY+G+S N+V +M   +
Sbjct: 6   VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63

Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
           H+    SSN V N++G S  + +LG ++ADA+ GRY T  I + IYL G+  +TL  ++ 
Sbjct: 64  HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123

Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
              P + +   +     +CE A   Q+   +  LY    G  G +P +S+ GADQFDE  
Sbjct: 124 GLKPPKCSTANVE----NCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179

Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
              K H   FFN++  S+  G   A T++VY+Q   GW   +G   + +  S  +F +GT
Sbjct: 180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239

Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
            LYRH+LP GSP T++A+V+VA+ RK     SS      YE+P    A K +  I  T  
Sbjct: 240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDS-TRFYELPPMEYASKRAFPIHSTSS 298

Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
            R L++A+L+      +   W+LCT+T+VEE K +++++P+   T + +++L + +TL +
Sbjct: 299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354

Query: 401 QQAYTMNTHM--------------------------------------GHPRGASQLQRV 422
           +Q  T++  +                                      G+PRG + LQR+
Sbjct: 355 KQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRM 414

Query: 423 GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP-DLSAYWLLIQYCLIGIAEVF 481
           GIG+ + IL +I A I ERYR   A  HG   +  TA+P  LS + LL QY L+G+A+ F
Sbjct: 415 GIGMILHILIMIIASITERYRLKVAAEHG--LTHQTAVPIPLSIFTLLPQYVLMGLADAF 472

Query: 482 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 541
             +  LEF Y++AP++MKS+G++Y + +  +G F +SIL S +  +T    +G   W+  
Sbjct: 473 IEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRG---WIQN 529

Query: 542 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDS 595
           N+N  R D  Y   AVL+++NF  FL     Y+YR++     + E  E  + D+
Sbjct: 530 NLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQKEPNMVDN 583

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  324 bits (830), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 202/589 (34%), Positives = 310/589 (52%), Gaps = 53/589 (8%)

Query: 41  LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
           +G  YT   T V++ G P+   S  G W A  F+   E+ ERMAY+G+S N+  +M   +
Sbjct: 6   VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63

Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
           H+    SSN V N++G S  + +LG ++ DA LGRY T  I   IY +G+  +TL  T+ 
Sbjct: 64  HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123

Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
              P + +   +     +CE A   Q+   +  LY    G  G +P +S+ GADQFD   
Sbjct: 124 GIKPPECSTTNVE----NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179

Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
              KT    FFN++  S+  G + A T++VY+Q   GW   +G   + + IS  +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239

Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
           P YRH+LP GSP T++A+V+VA+FRK +A   + ++   +E+P      KG+  I  T  
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDITSFHELPSLEYERKGAFPIHPTPS 298

Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
            R LD+A+L+   +      W LCT T+VEE K ++R++P+   T + +++L +  TL V
Sbjct: 299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354

Query: 401 QQAYTMNTHM--------------------------------------GHPRGASQLQRV 422
           +Q  T++  +                                      G+PRG + LQR+
Sbjct: 355 KQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRM 414

Query: 423 GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFC 482
           GIGL   IL +I A + ERYR   A  HG        +P L+ + LL Q+ L+G+A+ F 
Sbjct: 415 GIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLP-LTIFALLPQFVLMGMADSFL 473

Query: 483 IVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 542
            V  LEF Y++AP++MKS+G++Y+  +  +G F +S L S +  +T   KK    W+  N
Sbjct: 474 EVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEIT---KKRGRGWILNN 530

Query: 543 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 591
           +N  R DY Y   AVL+++NF  FL     Y YR+E     D + +E K
Sbjct: 531 LNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  321 bits (823), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 211/586 (36%), Positives = 311/586 (53%), Gaps = 70/586 (11%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V+  G+P AD SKTGGWI A  I G E+ ER++  G++VN+VT++   MH   + S+N V
Sbjct: 13  VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
            +F+G S    +LGGFLAD++LGR+ TI IF+TI   G   + +   +    P    C  
Sbjct: 72  TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRP--PTCHH 129

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                 +C PA ++QM  LY  LY+   G  G++  +S FG+DQFD++    K H+  FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N F+  +++G ++A T++VY+Q E G   A+G   ++M I+ ++F  GT  YR++   GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           P+ ++ QV+ AAFRKR      S ++ LYE       I    +I HTD F  LDKAA+  
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGI----RIEHTDQFHLLDKAAIVA 298

Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
           + D       V  P+PWKL +VT+VEEVK +VRL+PI A TI+      + +T SV+QA 
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358

Query: 405 TMNTHMGH---PRGA---------------------------------SQLQRVGIGLAV 428
           TM  ++G    P G+                                 S LQR+ IGL +
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVL 418

Query: 429 SILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLE 488
           S   +  A + E+ R + A S   +      +P +S + L+ Q+ L+G  E F   G L+
Sbjct: 419 STAGMAAAALVEQKRLSVAKSSSQK-----TLP-ISVFLLVPQFFLVGAGEAFIYTGQLD 472

Query: 489 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRF 548
           F   ++P  MK++ +        LG F +S L SI+K VT         WLA NIN GR 
Sbjct: 473 FFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTST--DVGWLADNINHGRL 530

Query: 549 DYLYWLLAVLSVINF-----CAFLYSAYRYKYRSEQKHGNDYEVME 589
           DY YWLL +LS INF     CA  +   + K   E+++G  + V +
Sbjct: 531 DYFYWLLVILSGINFVVYIICALWFKPTKGKDSVEKENGKGFSVED 576

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	597
224053581	638	predicted protein [Populus trichocarpa]	0.988	0.924	0.803	0.0
225425292	640	PREDICTED: probable peptide/nitrate tran	0.989	0.923	0.767	0.0
449468910	637	PREDICTED: probable peptide/nitrate tran	0.991	0.929	0.759	0.0
356569101	631	PREDICTED: probable peptide/nitrate tran	0.973	0.920	0.770	0.0
357501519	638	Peptide transporter-like protein [Medica	0.973	0.910	0.75	0.0
147771745	612	hypothetical protein VITISV_040927 [Viti	0.953	0.929	0.762	0.0
147866216	626	hypothetical protein VITISV_008303 [Viti	0.969	0.924	0.755	0.0
297811451	625	proton-dependent oligopeptide transport	0.963	0.92	0.765	0.0
15240621	624	putative peptide/nitrate transporter [Ar	0.963	0.921	0.762	0.0
296085541	606	unnamed protein product [Vitis vinifera]	0.932	0.919	0.723	0.0

>gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa]

 Score = 1043 bits (2698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/632 (80%), Positives = 548/632 (86%), Gaps = 42/632 (6%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           MGS EIKSPE L ETPAT    S+    KKL +YF+ESDNRRMA GRGYTGGTTPV++HG
Sbjct: 1   MGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFY+MH+ F  SSNAVNNFLG
Sbjct: 61  KPIPDLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQ SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +FMP+Q  CD++S LL
Sbjct: 121 ISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           G+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYL
Sbjct: 181 GNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHTDDFRCLDKAAL+LKED +
Sbjct: 301 AQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGV 360

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
           +PSPW+LCTVTQVEEVK L++LVPIPACTIMLN+ILTE+LTLSVQQAYT+NTH+      
Sbjct: 361 DPSPWRLCTVTQVEEVKILIKLVPIPACTIMLNLILTEYLTLSVQQAYTLNTHLGHLKLP 420

Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWAGIF 439
                                          GHPRGASQLQRVGIGLA SILSV WA IF
Sbjct: 421 VTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQRVGIGLAFSILSVAWAAIF 480

Query: 440 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 499
           ERYRR YAI HGYEFSFLT MP+LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK
Sbjct: 481 ERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 540

Query: 500 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 559
           SIGSAYAALAGG+GCFAASILNSI+KSVTGNP K Q +WL+QNINTGRF+Y YWLL VLS
Sbjct: 541 SIGSAYAALAGGIGCFAASILNSIVKSVTGNPDKRQQSWLSQNINTGRFEYFYWLLTVLS 600

Query: 560 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 591
            INFCAFLYSA RYKYR+EQK G   EV+ NK
Sbjct: 601 AINFCAFLYSARRYKYRAEQKFGIQ-EVVTNK 631

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera]

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/632 (76%), Positives = 534/632 (84%), Gaps = 41/632 (6%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+      
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420

Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWAGIF 439
                                          GHP GASQLQRVGIGLAVSILSV WAG+F
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 480

Query: 440 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 499
           ERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 481 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 540

Query: 500 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 559
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 541 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 600

Query: 560 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 591
           VINFC FLYSA RYKYR  Q+   + E +  K
Sbjct: 601 VINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus]

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/637 (75%), Positives = 536/637 (84%), Gaps = 45/637 (7%)

Query: 1   MGSREIKSPESLQETPAT------SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNV 54
           MGSREIKS   + ETP        S S QRKKL ++FIESD+RR A GRGYTGGTTPVN+
Sbjct: 1   MGSREIKSLHEVNETPVLGRLDEHSESFQRKKLGMFFIESDDRRTAFGRGYTGGTTPVNI 60

Query: 55  HGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF 114
            GKPIADLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH  F  SS+AVNNF
Sbjct: 61  RGKPIADLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNF 120

Query: 115 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174
           LGISQASSVLGGFLADAYLGRYWTIAIFTTIYL GL GITLCAT+  F+PNQ  CD++S 
Sbjct: 121 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSL 180

Query: 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234
           LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFF
Sbjct: 181 LLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFF 240

Query: 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294
           YLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLT
Sbjct: 241 YLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLT 300

Query: 295 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED 354
           RVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HTDDFRCLDKAAL+LKED
Sbjct: 301 RVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKED 360

Query: 355 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---- 410
             NPSPWKLCTVTQVEEVK L++L+PIPACTIMLN++LTE+LTLSVQQAYTMNTH+    
Sbjct: 361 GGNPSPWKLCTVTQVEEVKILLKLIPIPACTIMLNLVLTEYLTLSVQQAYTMNTHIGRLK 420

Query: 411 ---------------------------------GHPRGASQLQRVGIGLAVSILSVIWAG 437
                                            GHP GASQLQRVGIGLA+SILSV WAG
Sbjct: 421 LPVTCMPVFPGLSIFLILSLYYSVFVPLSRRITGHPHGASQLQRVGIGLAISILSVAWAG 480

Query: 438 IFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 497
            FERYRRN+AI  GYE SFL+ MP+LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA
Sbjct: 481 AFERYRRNFAIRSGYEASFLSPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 540

Query: 498 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAV 557
           MKSIGSAYAALAGGLGCFAAS+LNSIIKSVTG+P    P+WL+QNINTGRFDY YWLL V
Sbjct: 541 MKSIGSAYAALAGGLGCFAASLLNSIIKSVTGSPNGRNPSWLSQNINTGRFDYFYWLLTV 600

Query: 558 LSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYD 594
           +S+INFC FLYSA++YKYR + + G    +MEN ++D
Sbjct: 601 MSIINFCIFLYSAHKYKYRKDHEVGEG--IMENGMHD 635

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max]

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/618 (77%), Positives = 521/618 (84%), Gaps = 37/618 (5%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M S EIKSP    +     +S +RKKL++YFIES++RRMA GRGYT G+TPV++HGK I 
Sbjct: 1   MDSSEIKSPAEGSQQGTPGNSLRRKKLAIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIV 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  DLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT+  F+PNQ+ CD+ S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+
Sbjct: 181 AAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTI 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDFR LDKAAL+LKED  NPSP
Sbjct: 301 VAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKEDGANPSP 360

Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---------- 410
           W+LCTVTQVEEVK L++L+PIPACTIMLNV+LTEFLTLSVQQAYT+NTH+          
Sbjct: 361 WRLCTVTQVEEVKILMKLIPIPACTIMLNVVLTEFLTLSVQQAYTLNTHLGRLKLPVTCM 420

Query: 411 ---------------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYR 443
                                      GHP GASQLQRVGIGLAVSILSV WA IFERYR
Sbjct: 421 PVFPGLSVFLILSLYYSIFVPVFRRITGHPHGASQLQRVGIGLAVSILSVAWAAIFERYR 480

Query: 444 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 503
           RNYAI HGY  SFLTAMP+LSAYWLLIQYCLIG+AEVFCIVGLLEFLYEEAPDAMKSIGS
Sbjct: 481 RNYAIKHGYLASFLTAMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGS 540

Query: 504 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 563
           AYAALAGGLGCF A+I+N+IIKS TGN  KGQP+WL+QNINTGRFDY YWLL  LS+INF
Sbjct: 541 AYAALAGGLGCFVATIINNIIKSATGNLDKGQPSWLSQNINTGRFDYFYWLLTALSIINF 600

Query: 564 CAFLYSAYRYKYRSEQKH 581
             F+YSA+RYKYR  Q H
Sbjct: 601 AIFVYSAHRYKYREHQVH 618

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula]

 Score =  974 bits (2518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/628 (75%), Positives = 528/628 (84%), Gaps = 47/628 (7%)

Query: 1   MGSREIKSPESLQE-TPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPI 59
           M + EIKSPE+ Q+ TP TS S  RKKL ++FIES++RRMALGRGYT G+TPVN+HGK I
Sbjct: 1   MDTCEIKSPEAPQQGTPCTSMS--RKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSI 58

Query: 60  ADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQ 119
            DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQ
Sbjct: 59  EDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQ 118

Query: 120 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
           ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+C
Sbjct: 119 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNC 178

Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
           EPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT
Sbjct: 179 EPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVT 238

Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
           +GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQV
Sbjct: 239 IGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQV 298

Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
           LVAA+RKR  +F +SE++GLYEVPG+ SAIKGS KIAHTDDFR LDKAAL+LK+D  NPS
Sbjct: 299 LVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPS 358

Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM--------- 410
            W LCTVTQVEEVK L++L+PIPACTIMLNVILTEFLTLSVQQAYT+NTH+         
Sbjct: 359 QWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTC 418

Query: 411 ----------------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERY 442
                                       GHP GASQLQR+GIGL VSILSV WA IFE+Y
Sbjct: 419 MPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKY 478

Query: 443 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 502
           RRNYAI + +E SFLT MP+LSAYWLLIQYCLIG+AEVFCIVGLLEFLYEEAPDAMKSIG
Sbjct: 479 RRNYAIKNEFEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIG 538

Query: 503 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 562
           SAYAALAGGLGCF A+ +NS++KS TGN  K Q +WL+QNINTG+FDY YW+L  LS++N
Sbjct: 539 SAYAALAGGLGCFFATFINSVVKSATGNSDKRQESWLSQNINTGKFDYFYWVLTALSLVN 598

Query: 563 FCAFLYSAYRYKYRSEQ-------KHGN 583
           FC FLYSA+RYKYR++        KH N
Sbjct: 599 FCIFLYSAHRYKYRTQHVYEMESIKHDN 626

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera]

 Score =  973 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/620 (76%), Positives = 520/620 (83%), Gaps = 51/620 (8%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFR          +D  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFR----------KDGA 350

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG----- 411
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G     
Sbjct: 351 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 410

Query: 412 --------------------------------HPRGASQLQRVGIGLAVSILSVIWAGIF 439
                                           HP GASQLQRVGIGLAVSILSV WAG+F
Sbjct: 411 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 470

Query: 440 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 499
           ERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 471 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 530

Query: 500 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 559
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 531 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 590

Query: 560 VINFCAFLYSAYRYKYRSEQ 579
           VINFC FLYSA RYKYR+ Q
Sbjct: 591 VINFCIFLYSAQRYKYRAFQ 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera]

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/627 (75%), Positives = 522/627 (83%), Gaps = 48/627 (7%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DL K        +  GNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLFKD-------WRLGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 113

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 114 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 173

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 174 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 233

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 234 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 293

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 294 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 353

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+      
Sbjct: 354 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 413

Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWAGIF 439
                                          GHP GASQLQRVGIGLAVSILSV WAG+F
Sbjct: 414 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 473

Query: 440 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 499
           ERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 474 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 533

Query: 500 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 559
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 534 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 593

Query: 560 VINFCAFLYSAYRYKYRSEQKHGNDYE 586
           VINFC FLYSA RYKYR  Q+   + E
Sbjct: 594 VINFCIFLYSAQRYKYRVAQEGTMEEE 620

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/615 (76%), Positives = 526/615 (85%), Gaps = 40/615 (6%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
           SSVLGGFLADAYLGRYWTIAIFTT+YL   L GITL A++K+F+P+Q NC ++S LLG+C
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNC 180

Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
           EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT
Sbjct: 181 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVT 240

Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
           +GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQV
Sbjct: 241 LGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQV 300

Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
           LVAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H+DDF  LDKAAL+LKED + PS
Sbjct: 301 LVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPS 360

Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM--------- 410
           PWKLCTVTQVEEVK L+RL+PIPACTIML+++LTE+LTLSVQQAYT+NTH+         
Sbjct: 361 PWKLCTVTQVEEVKILIRLIPIPACTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTC 420

Query: 411 ----------------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERY 442
                                       G+P GASQLQRVGIGLAVSI+SV WAG+FE Y
Sbjct: 421 MPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENY 480

Query: 443 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 502
           RR+YAI HG+EF+FLT MPDL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG
Sbjct: 481 RRHYAIQHGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 540

Query: 503 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 562
           SAYAALAGGLGCFAA+ILN+I+K+ T +      +WL+QNINTGRFD LYWLL +LS +N
Sbjct: 541 SAYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLN 598

Query: 563 FCAFLYSAYRYKYRS 577
           FC FL+SA+RYKYR+
Sbjct: 599 FCVFLWSAHRYKYRA 613

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana]

 Score =  964 bits (2492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/614 (76%), Positives = 524/614 (85%), Gaps = 39/614 (6%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---------- 410
           WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+          
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420

Query: 411 ---------------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYR 443
                                      G+P GASQLQRVGIGLAVSI+SV WAG+FE YR
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480

Query: 444 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 503
           R+YAI +G+EF+FLT MPDL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540

Query: 504 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 563
           AYAALAGGLGCFAA+ILN+I+K+ T +      +WL+QNINTGRFD LYWLL +LS +NF
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNF 598

Query: 564 CAFLYSAYRYKYRS 577
           C FL+SA+RYKYR+
Sbjct: 599 CVFLWSAHRYKYRA 612

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera]

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/632 (72%), Positives = 504/632 (79%), Gaps = 75/632 (11%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+      
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420

Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWAGIF 439
                                          GHP GASQLQRVGIGLAVSILSV WAG  
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAG-- 478

Query: 440 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 499
                                           YCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 479 --------------------------------YCLIGIAEVFCIVGLLEFLYEEAPDAMR 506

Query: 500 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 559
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 507 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 566

Query: 560 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 591
           VINFC FLYSA RYKYR  Q+   + E +  K
Sbjct: 567 VINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	597
TAIR|locus:2181655	624	AT5G13400 [Arabidopsis thalian	0.755	0.722	0.767	1e-185
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.643	0.673	0.408	7.9e-112
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.633	0.646	0.406	4.6e-103
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.579	0.599	0.411	1.9e-89
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.654	0.667	0.343	3.9e-89
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.649	0.651	0.353	9.1e-88
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.584	0.591	0.396	1.2e-83
TAIR|locus:2084500	602	AT3G53960 [Arabidopsis thalian	0.561	0.556	0.376	4e-83
TAIR|locus:2089935	590	AT3G21670 [Arabidopsis thalian	0.587	0.594	0.361	7.4e-82
TAIR|locus:2065568	575	AT2G37900 [Arabidopsis thalian	0.562	0.584	0.388	2.5e-81

TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)]

 Score = 1801 (639.0 bits), Expect = 1.0e-185, P = 1.0e-185
 Identities = 347/452 (76%), Positives = 391/452 (86%)

Query:     1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
             M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct:     1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query:    61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
             +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct:    61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query:   121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
             SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct:   121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query:   181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
              AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct:   181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query:   241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
             GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct:   241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query:   301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
             VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct:   301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query:   361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQ 420
             WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ H +      
Sbjct:   361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420

Query:   421 RVGIGLAVSILSVIWAGIFERY-RRNYAISHG 451
              V  GL++ ++  ++  +F    RR     HG
Sbjct:   421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHG 452

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 793 (284.2 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
 Identities = 164/401 (40%), Positives = 242/401 (60%)

Query:    45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
             YT   T V++H  P A+  KTG W A  FI GNE  ER+AY+G+  N+V ++   +++  
Sbjct:     7 YTQDGT-VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64

Query:   105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
             A ++N V N+ G    + ++G F+ADAYLGRYWTIA F  IY++G+T +TL A++    P
Sbjct:    65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124

Query:   165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
                N D       +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K
Sbjct:   125 GNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176

Query:   225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
                  FFN+FY S+ VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR
Sbjct:   177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236

Query:   285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
              + PGGSPLTR+ QV+VAAFRK        + + L+E     S IKGS K+ HTD+ +  
Sbjct:   237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFF 295

Query:   345 DKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
             DKAA+E + D I     +PW+LC+VTQVEE+K+++ L+P+ A  I+   + ++  T+ V 
Sbjct:   296 DKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVL 355

Query:   402 QAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERY 442
             Q  TM+ HMG      ++    + L  ++  + W  +++++
Sbjct:   356 QGNTMDQHMGKN---FEIPSASLSLFDTVSVLFWTPVYDQF 393

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 4.6e-103, Sum P(2) = 4.6e-103
 Identities = 160/394 (40%), Positives = 233/394 (59%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             V+ +G P     KTG W A  FI GNE  ER+AY+G++ N++T++   +H+    ++  V
Sbjct:    30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
               + G    + ++G  LADAY GRYWTIA F+ IY  G++ +TL A++    P +  C  
Sbjct:    89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144

Query:   172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
             I     S  PA   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct:   145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query:   232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
             N+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGS
Sbjct:   202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query:   292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
             P+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD + LDKAA+  
Sbjct:   262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query:   352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
             +E+  +    + W+LCTVTQVEE+K L+R+ PI A  I+ + +  +  T+ VQQ   MN 
Sbjct:   321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query:   409 HMGHPRGASQLQRVGIGLAVSILSVIWAGIFERY 442
              +G    + QL    +G   +   +IW  +++R+
Sbjct:   381 KIG----SFQLPPAALGTFDTASVIIWVPLYDRF 410

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
 Identities = 151/367 (41%), Positives = 219/367 (59%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             V+  G+P AD SKTGGWI A  I G E+ ER++  G++VN+VT++   MH   + S+N V
Sbjct:    13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
              +F+G S    +LGGFLAD++LGR+ TI IF+TI   G TG    AT K+       C  
Sbjct:    72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALG-TGALAVAT-KLPELRPPTCHH 129

Query:   172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                   +C PA ++QM  LY  LY+   G  G++  +S FG+DQFD++    K H+  FF
Sbjct:   130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query:   232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
             N F+  +++G ++A T++VY+Q E G   A+G   ++M I+ ++F  GT  YR++   GS
Sbjct:   186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query:   292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
             P+ ++ QV+ AAFRKR      S ++ LYE       I+    I HTD F  LDKAA+  
Sbjct:   246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAIVA 298

Query:   352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
             + D       V  P+PWKL +VT+VEEVK +VRL+PI A TI+      + +T SV+QA 
Sbjct:   299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358

Query:   405 TMNTHMG 411
             TM  ++G
Sbjct:   359 TMRRNIG 365

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
 Identities = 140/407 (34%), Positives = 224/407 (55%)

Query:    41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
             +G  YT   T V++ G  +   S+TG W A  F+   E+ ERMAY+G+S N+V +M   +
Sbjct:     6 VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63

Query:   101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
             H+    SSN V N++G S  + +LG ++ADA+ GRY T  I + IYL G+  +TL  ++ 
Sbjct:    64 HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123

Query:   161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
                P +  C   +  + +CE A   Q+   +  LY    G  G +P +S+ GADQFDE  
Sbjct:   124 GLKPPK--CSTAN--VENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179

Query:   221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
                K H   FFN++  S+  G   A T++VY+Q   GW   +G   + +  S  +F +GT
Sbjct:   180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239

Query:   281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
              LYRH+LP GSP T++A+V+VA+ RK     SS      YE+P    A K +  I  T  
Sbjct:   240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDST-RFYELPPMEYASKRAFPIHSTSS 298

Query:   341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
              R L++A+L+      +   W+LCT+T+VEE K +++++P+   T + +++L + +TL +
Sbjct:   299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354

Query:   401 QQAYTMNTHMGHPRG---ASQLQRVGIGLAVSILSVIWAGIFERYRR 444
             +Q  T++  + +      AS L      + VSI  VI+  +F ++ R
Sbjct:   355 KQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSI--VIYDRVFVKFMR 399

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 9.1e-88, Sum P(2) = 9.1e-88
 Identities = 145/410 (35%), Positives = 221/410 (53%)

Query:    54 VHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNN 113
             +HG+P  +  K GG I   FIF NE+ E++A  G   NM++++   +H     ++N + N
Sbjct:    16 LHGRP--NRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTN 72

Query:   114 FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173
             F G S  + +LG F+AD++ GR+WTI   + IY  G+T +T+ A +    P     + + 
Sbjct:    73 FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV- 131

Query:   174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233
                  C  A + Q+  LY  L +   G+ GIRPCV +FGADQFDE   +  T    +FN+
Sbjct:   132 -----CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNW 186

Query:   234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
             +Y  +    ++A T++V+IQ   GWG   G   +AM +S + F  G  LYRH +P GSP 
Sbjct:   187 YYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPF 246

Query:   294 TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKE 353
             TR+ QV VAAFRKR     S   + LY      + I   GK+ HT     LDKAA+  +E
Sbjct:   247 TRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEE 305

Query:   354 DVINPS--P--WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409
             D + P   P  W+L TV +VEE+K+++R+ PI A  I+L     +  T S+QQA TMN H
Sbjct:   306 DNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRH 365

Query:   410 MGH----PRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYA-ISHGYEF 454
             + +    P G+  +    + +  +I  + +  +F +  R +  +  G  F
Sbjct:   366 LTNSFQIPAGSMSVFTT-VAMLTTI--IFYDRVFVKVARKFTGLERGITF 412

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
 Identities = 144/363 (39%), Positives = 209/363 (57%)

Query:    56 GKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL 115
             G+P AD SKTGGW +A  I   E  ER+   G+ VN+VT++   MH   A ++N V NFL
Sbjct:    20 GRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFL 78

Query:   116 GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175
             G S    +LGGF+AD +LGRY TIAIF  I   G++ +TL   +    P + N    S  
Sbjct:    79 GTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH- 137

Query:   176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235
                CE A   Q+  LY  LY+T  G  G++  VS FG+DQFDE     ++ +  FFN F+
Sbjct:   138 ---CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194

Query:   236 LSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
               + VG+++A T++VY+Q + G  WG    A AI + +S  +F  GT  YR +   GSP+
Sbjct:   195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIGSPM 252

Query:   294 TRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
             T+VA V+VAA+R R     +  S L  + ++     ++KG  K+ HT+ FR LDKAA+  
Sbjct:   253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRD 312

Query:   352 KEDVINPS---PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
             +E  +  +    W L T+T VEEVK +VR++PI A  I+   +  +  TLSV Q+ T++ 
Sbjct:   313 QEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDR 372

Query:   409 HMG 411
              +G
Sbjct:   373 SIG 375

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
 Identities = 133/353 (37%), Positives = 203/353 (57%)

Query:    63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
             ++TG W AALFI G E +ER++YFG+S N+V ++  ++H+    +    N + G++    
Sbjct:    36 AQTGAWRAALFIIGIEFSERLSYFGISTNLVVYLTTILHQDLKMAVKNTNYWSGVTTLMP 95

Query:   123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-EP 181
             +LGGF+ADAYLGRY T+ + TTIYL GL  I L  T+  F+P    C         C EP
Sbjct:    96 LLGGFVADAYLGRYGTVLLATTIYLMGL--ILL--TLSWFIPGLKACHE-----DMCVEP 146

Query:   182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241
              K+ ++ + +  +Y+   G  G +P + SFGADQF++   + +     +FN++   +  G
Sbjct:   147 RKAHEIAF-FIAIYLISIGTGGHKPSLESFGADQFEDGHPEERKMKMSYFNWWNAGLCAG 205

Query:   242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV 301
              + A T++VYI+   GWG A   L I M  S  +F IG P YR+R P GSPLT + QV V
Sbjct:   206 ILTAVTVIVYIEDRIGWGVASIILTIVMATSFFIFRIGKPFYRYRAPSGSPLTPMLQVFV 265

Query:   302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL--ELKEDVI--N 357
             AA  KR+    S   + L+E+  +    KG   ++ + + + LDKAA+  +  E+     
Sbjct:   266 AAIAKRNLPCPSDSSL-LHELTNEEYT-KGR-LLSSSKNLKFLDKAAVIEDRNENTKAEK 322

Query:   358 PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
              SPW+L TVT+VEEVK L+ ++PI   T+   V  T+  TL ++QA  M+ H+
Sbjct:   323 QSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHI 375

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2089935 AT3G21670 [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
 Identities = 135/373 (36%), Positives = 198/373 (53%)

Query:    47 GGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD 106
             G     +  G P  D SKTGGW+ A  I G+E++ER+   G+S+N+VT++   +H S A 
Sbjct:    13 GSEEAYDYRGNP-PDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDLHISSAK 71

Query:   107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166
             S+  V NF+G      +LGGFLADA LGRY  +AI  ++   G+  +T+  T+    P  
Sbjct:    72 SATIVTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTVATTISSMRP-- 129

Query:   167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226
               CD   +L   C  A   Q+  LY  LY    G  GI+  VS FG+DQFD      +  
Sbjct:   130 PICDDFRRLHHQCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQ 189

Query:   227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286
             +  FFN FY S++VG++ A   +VY+Q   G G  +G  A  M ++ ++   GT  YR +
Sbjct:   190 MIFFFNRFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFK 249

Query:   287 LPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKG--SGKIAHTDDFRCL 344
              P GSP T + +V   A++KR  ++           P   S + G  +  + HT+  +CL
Sbjct:   250 KPKGSPFTTIWRVGFLAWKKRKESY-----------PAHPSLLNGYDNTTVPHTEMLKCL 298

Query:   345 DKAALELKE------DVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 398
             DKAA+   E      D     PW + TVTQVEEVK +++LVPI A  I+   I ++  T 
Sbjct:   299 DKAAISKNESSPSSKDFEEKDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTF 358

Query:   399 SVQQAYTMNTHMG 411
             +V+QA  M+  +G
Sbjct:   359 TVEQATFMDRKLG 371

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
 Identities = 137/353 (38%), Positives = 207/353 (58%)

Query:    63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
             ++TG W AALFI   E +ER++YFGL+ N+V ++  ++++    +   VN + G++    
Sbjct:    37 ARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMP 96

Query:   123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-EP 181
             +LGGF+ADAYLGRY T+ + TTIYL GL  + L  TM  F+P    C +       C EP
Sbjct:    97 LLGGFIADAYLGRYATVLVATTIYLMGL--VLL--TMSWFIPGLKPCHQ-----EVCVEP 147

Query:   182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241
              K+ ++ + +  +Y+   G  G +P + SFGADQFD+   + +     FFN++ +S+  G
Sbjct:   148 RKAHEVAF-FIAIYLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAG 206

Query:   242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV 301
              + A T V YI+   GWG A   L + M IS ++FFIG P YR+R P GSPLT + QV V
Sbjct:   207 ILTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFV 266

Query:   302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL-ELKEDVI--NP 358
             AA  KR+  + S   + L+EV  K     G   + HT+  + LDKAA+ E K  +     
Sbjct:   267 AAIAKRNLPYPSDPSL-LHEV-SKTEFTSGR-LLCHTEHLKFLDKAAIIEDKNPLALEKQ 323

Query:   359 SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG 411
             SPW+L T+T+VEE K ++ ++PI   T+   +  T+  T  ++QA TM+ H+G
Sbjct:   324 SPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIG 376

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYR6	PTR49_ARATH	No assigned EC number	0.7622	0.9631	0.9214	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	597
pfam00854	372	pfam00854, PTR2, POT family	3e-53
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	8e-18
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	3e-15
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-06
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	3e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  185 bits (472), Expect = 3e-53
 Identities = 102/410 (24%), Positives = 165/410 (40%), Gaps = 75/410 (18%)

Query: 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 195
           + TI + + IY  G   +TL A      P Q                    +   Y  LY
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40

Query: 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255
           +   G  GI+P VS+FGADQFDE     +   D FF++FY S+  G+++A  +  Y+Q  
Sbjct: 41  LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97

Query: 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 313
            G+   FG  A+ M ++ ++F +G+  Y+ + P GGSP T  +A ++ AA + R      
Sbjct: 98  VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157

Query: 314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373
                LY    K++    S    HT        A + +                 V  ++
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LFDQQGSVWLLQ 207

Query: 374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG---------------------- 411
            ++ ++PI A  I+ + + T+  TL V+Q  TM+  +                       
Sbjct: 208 AILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILL 267

Query: 412 ------------HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 459
                         RG +  QR G+G+ + I++   A I E  R  YA + G      T 
Sbjct: 268 PILDFLVYPLLRLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTV 327

Query: 460 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALA 509
              L   W L +  + G+       G LEF  +  P +M S+ +  +A A
Sbjct: 328 P--LFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLLSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 86.2 bits (214), Expect = 8e-18
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 34/210 (16%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLA 129
           IF  E+ ER +Y+G+   ++ +++Y +          ++   + +  +   + ++GG+LA
Sbjct: 26  IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85

Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
           D  LG   TI +   +   G   + + +                                
Sbjct: 86  DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-------------------------- 119

Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
           LY  L +   G    +P +SS   + + +         D  F  FY+ + +G+++A  + 
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175

Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
             + + +GW   FG  A+ M I  ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 78.7 bits (194), Expect = 3e-15
 Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 34/227 (14%)

Query: 92  MVTFMF-YVMHKSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147
           M T +  Y+++    +   A N    F  +   + ++G  +AD++LG++ TI   + +Y+
Sbjct: 6   MKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYV 65

Query: 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207
            G    +L A   +  P  D       L+G                L +   G  GI+PC
Sbjct: 66  VGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGIKPC 105

Query: 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHGWGS 260
           VS+FG DQF+ER    +    RFF+FFY ++  G++ +  +       V     +  +  
Sbjct: 106 VSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162

Query: 261 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307
           AFG   I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 36/211 (17%)

Query: 72  LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA 131
           L +F       +    LS  +       +  S + +   V+ F       S+L G+L+D 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
           + GR   + +   ++  G   +                            A S  +L + 
Sbjct: 61  F-GRRRVLLLGLLLFALGSLLLAF--------------------------ASSLWLLLVG 93

Query: 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251
             L   G G   + P  ++  A+ F  +         R    F     +GA++   L   
Sbjct: 94  RFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGL 145

Query: 252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
           +    GW   F  LAI   +  +L      L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 39/217 (17%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADA 131
           +F  E+ ER +Y+G+   +  ++       F+   +      +  +    + +G +  D 
Sbjct: 15  LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74

Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
             G   T+          L GI L                   +LG    A S   +Y  
Sbjct: 75  VWGTKKTMV---------LGGIVL-------------------MLGHFMLAMS---IYPD 103

Query: 192 TVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
            + Y  G    G+   +   SS     ++   +      D  F  FY+S+ +G+ ++  L
Sbjct: 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLL 160

Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
              I   +G+   F   A+ M I  + FF G  + R 
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)

Query: 83  MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142
           +    L   +  ++   +  S  +    +  F      +  L G L+D + GR   + I 
Sbjct: 10  LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68

Query: 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 202
             ++  GL  +   +                          S  +L +  VL   G G  
Sbjct: 69  LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100

Query: 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262
            + P  ++  AD F            R          +GA +   L   +    GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154

Query: 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305
             LAI   ++ +L  +  P          P       LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	597
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.94
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.94
PRK05122	399	major facilitator superfamily transporter; Provisi	99.94
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
PRK12382	392	putative transporter; Provisional	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
PRK10054	395	putative transporter; Provisional	99.93
PRK10504	471	putative transporter; Provisional	99.93
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.92
PRK11663	434	regulatory protein UhpC; Provisional	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
PRK09705	393	cynX putative cyanate transporter; Provisional	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
PRK09874	408	drug efflux system protein MdtG; Provisional	99.91
TIGR00893	399	2A0114 d-galactonate transporter.	99.91
PRK10642	490	proline/glycine betaine transporter; Provisional	99.91
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.91
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.9
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.9
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.9
TIGR00891	405	2A0112 putative sialic acid transporter.	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
PRK03699	394	putative transporter; Provisional	99.9
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.9
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.9
PRK12307	426	putative sialic acid transporter; Provisional	99.89
PRK03633	381	putative MFS family transporter protein; Provision	99.89
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.89
PRK09952	438	shikimate transporter; Provisional	99.89
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.89
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.89
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.89
PRK15011	393	sugar efflux transporter B; Provisional	99.89
KOG0569	485	consensus Permease of the major facilitator superf	99.89
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.89
TIGR00895	398	2A0115 benzoate transport.	99.89
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.89
PRK03893	496	putative sialic acid transporter; Provisional	99.88
PLN00028	476	nitrate transmembrane transporter; Provisional	99.88
TIGR00898	505	2A0119 cation transport protein.	99.88
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.88
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.88
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.88
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.87
KOG0254	513	consensus Predicted transporter (major facilitator	99.87
PRK11043	401	putative transporter; Provisional	99.87
PRK09528	420	lacY galactoside permease; Reviewed	99.87
PRK15075	434	citrate-proton symporter; Provisional	99.86
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.86
KOG2532	466	consensus Permease of the major facilitator superf	99.86
PRK10133	438	L-fucose transporter; Provisional	99.86
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.86
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.86
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.85
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.85
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.85
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.84
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.84
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.84
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.83
PRK11010	491	ampG muropeptide transporter; Validated	99.83
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.82
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.81
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.8
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.8
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.8
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.79
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.79
PRK11902	402	ampG muropeptide transporter; Reviewed	99.78
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.77
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.77
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.76
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.76
TIGR00901	356	2A0125 AmpG-related permease.	99.76
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.74
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.71
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.71
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.7
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.69
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.69
PRK09848	448	glucuronide transporter; Provisional	99.69
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.69
TIGR00805	633	oat sodium-independent organic anion transporter.	99.68
KOG2615	451	consensus Permease of the major facilitator superf	99.68
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.67
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.67
PRK10429	473	melibiose:sodium symporter; Provisional	99.67
PRK09669	444	putative symporter YagG; Provisional	99.66
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.63
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.62
PF13347	428	MFS_2: MFS/sugar transport protein	99.61
PTZ00207	591	hypothetical protein; Provisional	99.61
KOG2533	495	consensus Permease of the major facilitator superf	99.59
PRK11462	460	putative transporter; Provisional	99.57
PRK10642	490	proline/glycine betaine transporter; Provisional	99.53
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.51
PRK15011	393	sugar efflux transporter B; Provisional	99.48
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.48
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.44
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.44
PRK03699	394	putative transporter; Provisional	99.43
PRK09952	438	shikimate transporter; Provisional	99.42
PRK05122	399	major facilitator superfamily transporter; Provisi	99.41
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.41
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.41
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.4
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.4
COG2211	467	MelB Na+/melibiose symporter and related transport	99.39
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.39
PRK09874	408	drug efflux system protein MdtG; Provisional	99.38
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.37
PRK11663	434	regulatory protein UhpC; Provisional	99.37
TIGR00893	399	2A0114 d-galactonate transporter.	99.37
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.36
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.36
PRK03893	496	putative sialic acid transporter; Provisional	99.35
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.35
PRK09705	393	cynX putative cyanate transporter; Provisional	99.34
PRK03545	390	putative arabinose transporter; Provisional	99.34
PRK09528	420	lacY galactoside permease; Reviewed	99.34
PRK12382	392	putative transporter; Provisional	99.33
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.32
PRK10489	417	enterobactin exporter EntS; Provisional	99.32
TIGR00891	405	2A0112 putative sialic acid transporter.	99.32
PRK15075	434	citrate-proton symporter; Provisional	99.31
PRK03633	381	putative MFS family transporter protein; Provision	99.3
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.28
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.27
PRK11010	491	ampG muropeptide transporter; Validated	99.26
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.26
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.25
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.25
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.24
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.21
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.21
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.2
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.18
KOG2563	480	consensus Permease of the major facilitator superf	99.17
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.16
PRK12307	426	putative sialic acid transporter; Provisional	99.16
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.14
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.14
TIGR00900	365	2A0121 H+ Antiporter protein.	99.13
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.13
PRK10504	471	putative transporter; Provisional	99.12
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.12
PLN00028	476	nitrate transmembrane transporter; Provisional	99.11
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.11
PRK10091	382	MFS transport protein AraJ; Provisional	99.1
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.1
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.09
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.09
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.09
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.08
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.07
TIGR00895	398	2A0115 benzoate transport.	99.07
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.06
PRK11902	402	ampG muropeptide transporter; Reviewed	99.05
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.05
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.04
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.03
PRK10133	438	L-fucose transporter; Provisional	99.01
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.0
PRK10054	395	putative transporter; Provisional	99.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.98
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.97
KOG3626	735	consensus Organic anion transporter [Secondary met	98.97
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.94
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.88
PRK09848	448	glucuronide transporter; Provisional	98.87
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.87
TIGR00898	505	2A0119 cation transport protein.	98.86
TIGR00901	356	2A0125 AmpG-related permease.	98.82
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.82
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.8
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.8
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.78
PF13347	428	MFS_2: MFS/sugar transport protein	98.78
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.77
KOG0569	485	consensus Permease of the major facilitator superf	98.77
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.75
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.75
PRK11043	401	putative transporter; Provisional	98.75
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.74
PRK10429	473	melibiose:sodium symporter; Provisional	98.72
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.7
PRK09669	444	putative symporter YagG; Provisional	98.69
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.66
KOG2532	466	consensus Permease of the major facilitator superf	98.64
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.64
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.61
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.53
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.53
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.53
COG0477	338	ProP Permeases of the major facilitator superfamil	98.5
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.45
PRK11462	460	putative transporter; Provisional	98.43
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.4
COG2211	467	MelB Na+/melibiose symporter and related transport	98.35
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.33
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.32
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.32
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.26
KOG3762	618	consensus Predicted transporter [General function	98.25
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.24
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.23
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.21
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.2
KOG3762	618	consensus Predicted transporter [General function	98.11
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.07
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.05
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.03
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.98
KOG2533	495	consensus Permease of the major facilitator superf	97.98
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.95
KOG0254	513	consensus Predicted transporter (major facilitator	97.88
PF12832	77	MFS_1_like: MFS_1 like family	97.83
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.8
TIGR00805	633	oat sodium-independent organic anion transporter.	97.76
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.74
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.74
KOG0637	498	consensus Sucrose transporter and related proteins	97.55
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.53
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.51
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.46
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.4
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.4
PTZ00207	591	hypothetical protein; Provisional	97.27
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.26
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.13
KOG2615	451	consensus Permease of the major facilitator superf	97.09
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.01
PRK03612	521	spermidine synthase; Provisional	96.95
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.65
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.46
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.38
KOG3626	735	consensus Organic anion transporter [Secondary met	96.37
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.08
KOG2563	480	consensus Permease of the major facilitator superf	96.08
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.68
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.41
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.33
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.02
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	94.97
KOG3097	390	consensus Predicted membrane protein [Function unk	93.93
KOG2325	488	consensus Predicted transporter/transmembrane prot	93.87
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.83
KOG3810	433	consensus Micronutrient transporters (folate trans	92.23
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.64
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	89.54
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	88.53
KOG3880	409	consensus Predicted small molecule transporter inv	86.38
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	85.83
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	84.67
KOG0637	498	consensus Sucrose transporter and related proteins	84.08
COG3202	509	ATP/ADP translocase [Energy production and convers	83.44
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	82.79

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=8.3e-57  Score=489.59  Aligned_cols=510  Identities=45%  Similarity=0.744  Sum_probs=456.6

Q ss_pred             CCccccCCCCccccc---cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhh
Q 007580           49 TTPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLG  125 (597)
Q Consensus        49 ~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~  125 (597)
                      .+.+|+++++. .+.   +++.|+....++..+.+++++++++..++..|++.++|.+...+...++.|.+...+.++++
T Consensus        15 ~~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g   93 (571)
T KOG1237|consen   15 FTSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLG   93 (571)
T ss_pred             cceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHH
Confidence            35667776666 554   88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchh
Q 007580          126 GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR  205 (597)
Q Consensus       126 G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~  205 (597)
                      ++++|.|+||++++.++.+++.+|..++++++..+.+.|.  .| .......+|+.+++.+...++.++.+.++|.|+.+
T Consensus        94 ~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r  170 (571)
T KOG1237|consen   94 AFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR  170 (571)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence            9999999999999999999999999999999999888886  44 11112346999999999999999999999999999


Q ss_pred             hhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 007580          206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH  285 (597)
Q Consensus       206 ~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~  285 (597)
                      |+..++.+|||++..+.++..+.++|+|+++..++|.+++-++..|++++.||.++|.++.+++++++++++.+.+.|++
T Consensus       171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~  250 (571)
T KOG1237|consen  171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRY  250 (571)
T ss_pred             CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEe
Confidence            99999999999988887888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchhhHHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcc---cCCCCCCc
Q 007580          286 RLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINPSPWK  362 (597)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~~~~~  362 (597)
                      .++.++|+.++.++++++.+||+...+.++.. +      +.........++.+.++++|+|+++...+   ....+||+
T Consensus       251 ~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~  323 (571)
T KOG1237|consen  251 KKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWR  323 (571)
T ss_pred             eCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c------cccccccccccCCcccchhhHhhccCCcccccccccCCcc
Confidence            99999999999999999999999888765443 2      11122223445678899999999987653   23468999


Q ss_pred             cccchhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhcccC--------------------------------
Q 007580          363 LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM--------------------------------  410 (597)
Q Consensus       363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  410 (597)
                      +|+++++||.|++++.+|+|.+.++++++++|+.+.++.|+.+||+++                                
T Consensus       324 lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP  403 (571)
T KOG1237|consen  324 LCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVP  403 (571)
T ss_pred             CCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehh
Confidence            999999999999999999999999999999999999999999999888                                


Q ss_pred             ------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHH
Q 007580          411 ------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIV  484 (597)
Q Consensus       411 ------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~  484 (597)
                            +...+++.++|+++|+++..++|..++.+|.+|++.+.+.     .....+ +|++|++|||+++|++|.+..+
T Consensus       404 ~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~-----~~~~~~-mSi~W~iPQyvLig~~Evf~~v  477 (571)
T KOG1237|consen  404 FARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSL-----LVETNP-MSILWQIPQYVLLGAGEVFTSV  477 (571)
T ss_pred             hhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhc-----cCCCCC-eeHHHHHHHHHHHHHHHHHHhh
Confidence                  3335789999999999999999999999999998887651     122456 9999999999999999999999


Q ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccc-cCCCCcchhHHHHHHHHHHHHHH
Q 007580          485 GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINF  563 (597)
Q Consensus       485 ~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~-~~l~~~~~~~~f~~~a~l~~l~~  563 (597)
                      +++|+.++++|++||+.+++++.+..++|++++++++.++...++  .  ..+|++ +|+|.+|++++||+++.++.++.
T Consensus       478 g~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~  553 (571)
T KOG1237|consen  478 GGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNF  553 (571)
T ss_pred             hhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999988764  2  468999 99999999999999999999999


Q ss_pred             HHHHHhhhcccccccC
Q 007580          564 CAFLYSAYRYKYRSEQ  579 (597)
Q Consensus       564 ~~~~~~~~~~~~~~~~  579 (597)
                      +.+.++.++|+++..+
T Consensus       554 ~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  554 LYFLICAKRYDYKDDK  569 (571)
T ss_pred             hheEEEEEeeeecccc
Confidence            9999999999888654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-37  Score=322.98  Aligned_cols=431  Identities=17%  Similarity=0.251  Sum_probs=329.8

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHH
Q 007580           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW  137 (597)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~  137 (597)
                      ....+++|.++.++..+++||++|||+...+..|++.+++    ++.+++..+.+.|....++.+++|||++||++|+|+
T Consensus        14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~   93 (498)
T COG3104          14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR   93 (498)
T ss_pred             cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence            4445688999999999999999999999999999999999    999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 007580          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (597)
Q Consensus       138 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~  217 (597)
                      ++..+.+++++|.++++.+..                          .+...++++..++++|.|+.+++..++++|++|
T Consensus        94 tI~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~  147 (498)
T COG3104          94 TIVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYP  147 (498)
T ss_pred             HHHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcC
Confidence            999999999999999998631                          134579999999999999999999999999999


Q ss_pred             CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCCchhh
Q 007580          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLTR  295 (597)
Q Consensus       218 ~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  295 (597)
                      +++++    |..+|+++|++.|+|+.++|++.+++.++.||.++|.+.++.+.++++.++++++......  +...++..
T Consensus       148 ~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~  223 (498)
T COG3104         148 KDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSF  223 (498)
T ss_pred             CCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhh
Confidence            99987    9999999999999999999999999999999999999999999999999999888775543  22222111


Q ss_pred             ------HHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhH-HHhhhhhccc-CCCCCCccccch
Q 007580          296 ------VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD-KAALELKEDV-INPSPWKLCTVT  367 (597)
Q Consensus       296 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~~~~~~-~~~~~~~~~~~~  367 (597)
                            ...++.....-     +  ... +                ...+..+... ...+...... ...-.|.   .+
T Consensus       224 ~~~~~~~~~~~~~~~~~-----~--~~~-~----------------l~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~  276 (498)
T COG3104         224 NFLLPVLGGLVVMILAA-----L--LTL-L----------------LNQNTFSGVLLVISILIAIIYFAEAFRSP---KV  276 (498)
T ss_pred             hhhhhhHHHHHHHHHHH-----H--HHH-H----------------HHHHHHHHHHHHHHHHHHHHHHHHHhccC---cc
Confidence                  11111111000     0  000 0                0000011110 0000000000 0001111   12


Q ss_pred             hhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHHh-hhcccC---------------------------------CCC
Q 007580          368 QVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHM---------------------------------GHP  413 (597)
Q Consensus       368 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------------------~~~  413 (597)
                      . +|+|+.+..+++++...+||+++.|+++.+..++. ..|++.                                 +..
T Consensus       277 ~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~  355 (498)
T COG3104         277 F-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN  355 (498)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC
Confidence            2 68899999999999999999999999999988875 446661                                 333


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580          414 RGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE  493 (597)
Q Consensus       414 ~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~  493 (597)
                      +.++...++++|+.+++++++++........+             +....|++|+++.|+++++||.+.+|..++++++.
T Consensus       356 ~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~-------------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~l  422 (498)
T COG3104         356 KQPSTPIKFALGLILAGLGFLILLLAGIWFGG-------------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKL  422 (498)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC-------------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHh
Confidence            55788888999999999999888776433211             11227899999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 007580          494 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  573 (597)
Q Consensus       494 ~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~  573 (597)
                      +|+.+.+..||++.+....|+.++..+.+.... ++           +..+..+...+|+..+...++..+......++.
T Consensus       423 aP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~-----------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~  490 (498)
T COG3104         423 APPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD-----------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKL  490 (498)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc-----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999999999999999988774221 11           001112234578888888888888777776664


Q ss_pred             cc
Q 007580          574 KY  575 (597)
Q Consensus       574 ~~  575 (597)
                      ++
T Consensus       491 ~r  492 (498)
T COG3104         491 NR  492 (498)
T ss_pred             HH
Confidence            44

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3.7e-34  Score=311.89  Aligned_cols=431  Identities=12%  Similarity=0.149  Sum_probs=305.5

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (597)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~  143 (597)
                      .+++||.++.+++.+++|++++|++..+++.|+++++|++.++++++.+.|....++.++++|+++||++||||+++++.
T Consensus         9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~   88 (489)
T PRK10207          9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA   88 (489)
T ss_pred             hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999998779999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (597)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~  223 (597)
                      +++.++.++++++..                           ....++++|.++|+|.|...|+..++++|+||+++++ 
T Consensus        89 ~~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~-  140 (489)
T PRK10207         89 IVLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR-  140 (489)
T ss_pred             HHHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh-
Confidence            999999999998621                           1234668999999999999999999999999987632 


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCCchhhHHHHH-
Q 007580          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLTRVAQVL-  300 (597)
Q Consensus       224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-  300 (597)
                         |++.+++++++.|+|..+||.+++++.++.|||+.|++.++.+.++++.+...++.+++.+  +++++.+.....+ 
T Consensus       141 ---~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~  217 (489)
T PRK10207        141 ---LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLV  217 (489)
T ss_pred             ---hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHH
Confidence               6889999999999999999999999999999999999987766666666655554443322  2222221111000 


Q ss_pred             ------HHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhH
Q 007580          301 ------VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKT  374 (597)
Q Consensus       301 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (597)
                            ....-.+..........++..                   ........+....          ...+. .++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~i~~~~f~~~~----------~~~~~-~~r~r  267 (489)
T PRK10207        218 LLGSVVMIFVCAWLMHNVEVANLVLIV-------------------LSIVVTIIFFREA----------FKLDK-TGRNK  267 (489)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHH-------------------HHHHHHHHHHHHH----------hcCCH-HHHHH
Confidence                  000000000000000000000                   0000000000000          00012 23445


Q ss_pred             hHhhhhhHHHHHHHHHHHhcchhhHHHHHh-hhcccC---------------------------------CCCCCCChhH
Q 007580          375 LVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHM---------------------------------GHPRGASQLQ  420 (597)
Q Consensus       375 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------------------~~~~~~~~~~  420 (597)
                      ....+.+++...++|..+.|..+.+..+.. .+++..                                 +++..++...
T Consensus       268 ~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~  347 (489)
T PRK10207        268 MFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPM  347 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHH
Confidence            555666677788899999998776665543 333321                                 3334567888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 007580          421 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS  500 (597)
Q Consensus       421 ~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg  500 (597)
                      ++.+|+++.+++++.++..+...   ...+         .. .+++|+++.+++.++||++.+|..++++++.+|++++|
T Consensus       348 k~~~G~~l~~~~~~~~~~~~~~~---~~~~---------~~-~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g  414 (489)
T PRK10207        348 KFTLGMFLCSLGFLTAAAAGMWF---ADAQ---------GL-TSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMG  414 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh---cCCC---------Cc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHH
Confidence            89999999888887665432110   0000         12 57899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580          501 IGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  576 (597)
Q Consensus       501 ~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~  576 (597)
                      .++|++++...+|+.+|..+.......    ....++.    .....|.++|..+++++++..++++++.++.++.
T Consensus       415 ~~~g~~~l~~~ig~~lg~~l~~~~~~~----~~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        415 FILGMWFLTQAAAFLLGGYVATFTAVP----DNITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc----cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888754310    0000010    0112367789999999998888888877765554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=8.2e-34  Score=308.87  Aligned_cols=421  Identities=14%  Similarity=0.141  Sum_probs=306.6

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHH
Q 007580           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (597)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~  141 (597)
                      ..++++.++.+++.++++++++|++.++++.|++++  +|++..+++++.+.+.++..++++++|+++||++|||+++.+
T Consensus         5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~   84 (475)
T TIGR00924         5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL   84 (475)
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence            346778899999999999999999999999999988  999999999999999999999999999999996699999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCc
Q 007580          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (597)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~  221 (597)
                      +.++..++.++++++                            .+...++++|.+.|+|.|...++..++++|++|++++
T Consensus        85 ~~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~  136 (475)
T TIGR00924        85 GGIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM  136 (475)
T ss_pred             HHHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc
Confidence            999999999888875                            3456788899999999999999999999999987652


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHH--
Q 007580          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV--  299 (597)
Q Consensus       222 ~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  299 (597)
                      +   .|++++++++++.|+|..+||++++++.++.||++.|++.++.++++.++++..++.+++.++++++.....+.  
T Consensus       137 ~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (475)
T TIGR00924       137 P---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYG  213 (475)
T ss_pred             c---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhH
Confidence            1   18889999999999999999999999999999999999988777766666666665554333322222111000  


Q ss_pred             ---------HHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhh
Q 007580          300 ---------LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVE  370 (597)
Q Consensus       300 ---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  370 (597)
                               +....+....          ....           ...+........+........ ..+|    ..++ .
T Consensus       214 ~~~~~~~~~~~~~~~~~~~----------~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~-~  266 (475)
T TIGR00924       214 KLLLALLAALALVFFCAWL----------MHHV-----------VIANILLMTVTLAVIIFFFRL-AFKP----RLDA-V  266 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHH----------Hhcc-----------HHHHHHHHHHHHHHHHHHHHH-HHhc----cCCH-H
Confidence                     0000000000          0000           000000000000111110000 0011    0122 2


Q ss_pred             hhhHhHhhhhhHHHHHHHHHHHhcchhhHHHH-HhhhcccC---------------------------------CCCCCC
Q 007580          371 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQ-AYTMNTHM---------------------------------GHPRGA  416 (597)
Q Consensus       371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------------------------~~~~~~  416 (597)
                      ++++....++++++..++|..+.|+.+.+..+ ...+|...                                 ++..++
T Consensus       267 ~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~  346 (475)
T TIGR00924       267 ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDP  346 (475)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            33444557888889999999999998866543 34455442                                 222345


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 007580          417 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  496 (597)
Q Consensus       417 ~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~  496 (597)
                      +...++.+|+++.++++..+++....    ...         ..+ .+++|+++++++.++||.+..|..++++++.+|+
T Consensus       347 ~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~---------~~~-~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~  412 (475)
T TIGR00924       347 TTPLKFTLGMLFCGASFLTFAASIWF----ADA---------GGL-TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ  412 (475)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhh----cCC---------CCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence            67778899999999999888765211    100         123 7899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580          497 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  574 (597)
Q Consensus       497 ~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~  574 (597)
                      ++||+++|++.+...+|+.+++.+.+......        +|          .++|..++++.++..++++++.++.+
T Consensus       413 ~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (475)
T TIGR00924       413 RLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ--------GV----------TGVFGKIGLVTLLVGVVMALMVPWLN  472 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ch----------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887653321        13          56788888888888777777766543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=4.7e-32  Score=296.80  Aligned_cols=428  Identities=15%  Similarity=0.200  Sum_probs=303.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      ++++.++.+++.++++++++|++..+++.|+++++|++..++++..+.+.......++++|+++||++|||+++.++.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            56678899999999999999999999999999999999999999988888887888889999999944999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      +.++..+++++.                           .+...++++|+++|+|.|...++..++++|++|+++.+   
T Consensus        98 ~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~---  147 (500)
T PRK09584         98 LAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR---  147 (500)
T ss_pred             HHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh---
Confidence            999988888752                           13456778899999999999999999999999876532   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCccccc--CCCCCchhhH--H----
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTRV--A----  297 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~----  297 (597)
                       |...+++++++.++|+.+||.+++++.++.|||+.|++.++..+++++.+++.++.+++.  +++.++.+..  .    
T Consensus       148 -~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (500)
T PRK09584        148 -LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIV  226 (500)
T ss_pred             -hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHH
Confidence             567889999999999999999999999999999999998876666665555544433332  2222222111  0    


Q ss_pred             HHH-HHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhH
Q 007580          298 QVL-VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV  376 (597)
Q Consensus       298 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (597)
                      .+. ...........++..                      .....+...........       ..+..++ .|+++.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~  276 (500)
T PRK09584        227 GVVALIAIATWLLHNQEIA----------------------RMALGVVALGIVVIFGK-------EAFAMKG-AARRKMI  276 (500)
T ss_pred             HHHHHHHHHHHHHhcchHH----------------------HHHHHHHHHHHHHHHHH-------HHhhcCH-HHHHHHH
Confidence            000 111110000000000                      00000000000000000       0011122 3455555


Q ss_pred             hhhhhHHHHHHHHHHHhcchhhHHHHHhh-hcccC------------------------------CCCCCCChhHHHHHH
Q 007580          377 RLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM------------------------------GHPRGASQLQRVGIG  425 (597)
Q Consensus       377 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------------------~~~~~~~~~~~i~~G  425 (597)
                      ..+++++..+++|..+.|+++.+..++.. +|+..                              +.+++.+..+++.+|
T Consensus       277 ~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G  356 (500)
T PRK09584        277 VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIG  356 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHH
Confidence            66777788899999999999988876532 33222                              445566788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q 007580          426 LAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY  505 (597)
Q Consensus       426 ~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl  505 (597)
                      +++++++++.+......    ..++         .. .+.+|+++++++.++||++..|...+++++.+|+++||+++|+
T Consensus       357 ~~l~~l~f~~l~~~~~~----~~~~---------~~-vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~  422 (500)
T PRK09584        357 MVLCSGAFLVLPLGAKF----ANDA---------GI-VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGS  422 (500)
T ss_pred             HHHHHHHHHHHHHHHHh----cCCC---------Cc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHH
Confidence            99999999887765321    1111         12 6788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580          506 AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  576 (597)
Q Consensus       506 ~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~  576 (597)
                      +.+...+|+.++..+...+..-    ....+..    ...+.|..+|..+++++++..+++++..++.++.
T Consensus       423 ~~l~~a~g~~~~g~~~~~~~~~----~~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        423 WFLTTAGAALIAGYVANLMAVP----DNVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc----cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887643210    0000000    0112367889888988887777777777765554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=8.8e-32  Score=289.45  Aligned_cols=425  Identities=14%  Similarity=0.150  Sum_probs=296.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      ++++.++.+++.++++++++|++..+++.|+++.+|++..+++.+.+.+.....++++++|+++||++||||++.++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999933999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      ..++..+++...                           .+...++++..+.++|.|...++..++++|+||+++++   
T Consensus        86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~---  135 (493)
T PRK15462         86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR---  135 (493)
T ss_pred             HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence            999987766431                           11223555666777888888899999999999987433   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCC-CCCchhh--HHHHHHH
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR--VAQVLVA  302 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~  302 (597)
                       |+++++++|...|+|+.++|.+++++.++.||+++|++.++.++++++.++..++.+.+... ..++.++  .......
T Consensus       136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  214 (493)
T PRK15462        136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWG  214 (493)
T ss_pred             -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHH
Confidence             99999999999999999999999999999999999999887777777777666655433211 1122211  0000000


Q ss_pred             HHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHH-HhhhhhcccCCCCCCccccchhhhhhhHhHhhhhh
Q 007580          303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDK-AALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI  381 (597)
Q Consensus       303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  381 (597)
                      ..----...+    . +...           ... ......+-. ..+....-..    +-.......+|+|++...+++
T Consensus       215 ~~~~~~~~~~----~-~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~er~r~~~~~~l  273 (493)
T PRK15462        215 WLLVLLVATP----A-LITV-----------LFW-KEWSVYALIVATIIGLGVLA----KIYRKAENQKQRKELGLIVTL  273 (493)
T ss_pred             HHHHHHHHHH----H-HHHH-----------HHH-HHHHHHHHHHHHHHHHHHHH----HHHHhcCCHHHHhhHHHHHHH
Confidence            0000000000    0 0000           000 000000000 0000000000    000000123678888888999


Q ss_pred             HHHHHHHHHHHhcchhhHHHHH-hhhcccC---------------------------------CCCCCCChhHHHHHHHH
Q 007580          382 PACTIMLNVILTEFLTLSVQQA-YTMNTHM---------------------------------GHPRGASQLQRVGIGLA  427 (597)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------------------------~~~~~~~~~~~i~~G~~  427 (597)
                      ++..++||..|.|.++.+...+ +++|+++                                 ++++.++...++.+|++
T Consensus       274 ~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~  353 (493)
T PRK15462        274 TFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLG  353 (493)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence            9999999999999999877665 4667665                                 23445788889999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 007580          428 VSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA  507 (597)
Q Consensus       428 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~  507 (597)
                      ++++++.++.+.....    ..+|         . .+.+|++..++++++||.+.+|..++++.+.+|++.||+.||++.
T Consensus       354 ~~g~~f~~l~~~~~~~----~~~~---------~-~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~  419 (493)
T PRK15462        354 LMSAGFCILTLSARWS----AMYG---------H-SSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYM  419 (493)
T ss_pred             HHHHHHHHHHHHHhhc----CCCC---------C-cCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHH
Confidence            9999998887653221    1111         2 688999999999999999999999999999999999999999998


Q ss_pred             HHH-HHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHH
Q 007580          508 LAG-GLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN  562 (597)
Q Consensus       508 ~~~-~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~  562 (597)
                      +.. .+|+.++..+.+.......+|+.+.      .-+..+|..+|..++.+.++.
T Consensus       420 l~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        420 LLSGAIANYLAGVIADQTSQASFDASGAI------NYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCccccc------cchhhhHHHHHHHHHHHHHHH
Confidence            854 7999998888776532111000000      001224677888888777666

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.97  E-value=2.3e-28  Score=271.49  Aligned_cols=411  Identities=24%  Similarity=0.397  Sum_probs=325.9

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007580           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (597)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~  162 (597)
                      ++|||+...+..|+++.+|++.+.+..+.+.|.....+.++++|+++|+++||++++.++.+++.+|.+++++++.....
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999876431111


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007580          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (597)
Q Consensus       163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~  242 (597)
                      ++                    .+...+++++.+.++|.|+++|+..++.+|++++++.   +.|.++|+++|++.|+|+
T Consensus        81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGS  137 (654)
T TIGR00926        81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGS  137 (654)
T ss_pred             cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHH
Confidence            11                    2345577889999999999999999999999986542   238999999999999999


Q ss_pred             HHHHHHHHHhhhc-------cchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhcccCccc
Q 007580          243 IVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE  315 (597)
Q Consensus       243 ~l~p~i~~~i~~~-------~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (597)
                      .+++++.+++.+.       .+|.++|.+++++++++++++..+++.+++.++.++++.+..+++..+.|+|.....+. 
T Consensus       138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-  216 (654)
T TIGR00926       138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-  216 (654)
T ss_pred             HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-
Confidence            9999999999854       36999999999999999999999998888888888877777787777776543321100 


Q ss_pred             cccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHHHHHHHHHhcc
Q 007580          316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF  395 (597)
Q Consensus       316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (597)
                                             ...+|+|.+...             ...++++++|++++++++++...++|..+.|+
T Consensus       217 -----------------------~~~~~ld~a~~~-------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~  260 (654)
T TIGR00926       217 -----------------------WPLHWLDYAKDK-------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ  260 (654)
T ss_pred             -----------------------cchhHHHHhccc-------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                   012455544332             12346788999999999999999999999999


Q ss_pred             hhhHHHHHhhhcccC----------------------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007580          396 LTLSVQQAYTMNTHM----------------------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFER  441 (597)
Q Consensus       396 ~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~  441 (597)
                      .+....|+..++.++                                  +++..++..+++++|+++++++++++.+++.
T Consensus       261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~  340 (654)
T TIGR00926       261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQL  340 (654)
T ss_pred             hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988877653                                  3334578899999999999999998888877


Q ss_pred             HHhHH------------------------------------------h-------------hh--c--------------
Q 007580          442 YRRNY------------------------------------------A-------------IS--H--------------  450 (597)
Q Consensus       442 ~~~~~------------------------------------------~-------------~~--~--------------  450 (597)
                      ++++.                                          .             ..  +              
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (654)
T TIGR00926       341 KVNPTLPEEPSANEIFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGL  420 (654)
T ss_pred             HHhccccCCCCCcceEEEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccc
Confidence            75430                                          0             00  0              


Q ss_pred             ---------------C----c------c------------------------c----c----------------------
Q 007580          451 ---------------G----Y------E------------------------F----S----------------------  455 (597)
Q Consensus       451 ---------------g----~------~------------------------~----~----------------------  455 (597)
                                     +    +      .                        +    .                      
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (654)
T TIGR00926       421 TGNCPKTTDAHELEPKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDP  500 (654)
T ss_pred             cCCCCccccceeecCCceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccc
Confidence                           0    0      0                        0    0                      


Q ss_pred             ------------------------------c--------------------------cCcCccchHHHHHHHHHHHHHHH
Q 007580          456 ------------------------------F--------------------------LTAMPDLSAYWLLIQYCLIGIAE  479 (597)
Q Consensus       456 ------------------------------~--------------------------~~~~~~~s~~~l~~~~~l~g~g~  479 (597)
                                                    .                          ..+.+ ++++|++++|+++++||
T Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wq~pq~~~~~~~e  579 (654)
T TIGR00926       501 YDFYFRGTKYPANTCDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNT-VSILWQIPQYVILTAGE  579 (654)
T ss_pred             cccccccceeeeeecccccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCc-eeHHHHHHHHHHHHHHH
Confidence                                          0                          01223 67899999999999999


Q ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHH
Q 007580          480 VFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS  559 (597)
Q Consensus       480 ~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~  559 (597)
                      .+......++.++++|+++|+...+++.+..++|+.+...+...-        .-...|           .-|..++++.
T Consensus       580 ~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~  640 (654)
T TIGR00926       580 VLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFE--------NFSVQA-----------AEFFLFASLM  640 (654)
T ss_pred             HHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cChHHH-----------HHHHHHHHHH
Confidence            999999999999999999999999999999999999999887651        111223           3477777777


Q ss_pred             HHHHHHHHHhhhcc
Q 007580          560 VINFCAFLYSAYRY  573 (597)
Q Consensus       560 ~l~~~~~~~~~~~~  573 (597)
                      ++..+++.++++.|
T Consensus       641 ~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       641 LVVMAIFSILAYFY  654 (654)
T ss_pred             HHHHHHHHHHHhcC
Confidence            77777777776543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=6.9e-24  Score=225.64  Aligned_cols=179  Identities=12%  Similarity=0.114  Sum_probs=151.2

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (597)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~  143 (597)
                      +.++|..++.+.+..++.....+...+ +.+.+.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+++.++.
T Consensus         4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~   81 (390)
T PRK03545          4 RKVAWLRVVTLALAAFIFNTTEFVPVG-LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLF   81 (390)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHc-chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHH
Confidence            344566666666666665444443333 3456788999999999999999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (597)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~  223 (597)
                      +++.++.+++.++                            +++..++++|+++|++.+...+...+++.|++|+++   
T Consensus        82 ~~~~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~---  130 (390)
T PRK03545         82 VLFIASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK---  130 (390)
T ss_pred             HHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh---
Confidence            9999999888876                            578899999999999999999999999999999998   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                         |++.++++..+.++|..++|.+++.+.+..|||+.|++.++..++..+..+.
T Consensus       131 ---r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        131 ---KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             ---hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence               9999999999999999999999999999899999999988766555444433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.94  E-value=4.8e-24  Score=239.92  Aligned_cols=173  Identities=16%  Similarity=0.084  Sum_probs=141.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~  146 (597)
                      .|+.+..+.+..++..+... +...+.+++.++++++..+.+++.+.+.++..++.+++|+++|| +|||++++++.++.
T Consensus       165 ~~~l~~i~~l~~~~~g~d~~-~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~  242 (742)
T TIGR01299       165 QWALFFVLGLALMADGVEVF-VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHH
Confidence            44444444454455544433 34455677888999999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .++.++++++                            +++..++++|++.|+|.++..++..++++|.+|++.      
T Consensus       243 ~i~~ll~afa----------------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------  288 (742)
T TIGR01299       243 GFFAFFSSFV----------------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------  288 (742)
T ss_pred             HHHHHHHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence            9988888876                            467889999999999999999999999999999998      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhc-------------cchHHHHHHHHHHHHHHHHH
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-------------HGWGSAFGALAIAMGISNML  275 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~-------------~gw~~~f~i~~~~~~~~~~~  275 (597)
                      |+..++++.....+|.++++.++.++...             .+||+.|++.++..++.+++
T Consensus       289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~  350 (742)
T TIGR01299       289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA  350 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887665532             36899888777655554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.94  E-value=1.3e-23  Score=224.06  Aligned_cols=379  Identities=11%  Similarity=-0.014  Sum_probs=239.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      +.++.+..+.+..++..++.....+.++.|+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~   90 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCG   90 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHH
Confidence            344567778888888888888888899999999999999999999999999999999999999999 8999999999998


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      +.++.+.+.++......                    ...+...+++.|+++|++.+...+.....+.|++|+++     
T Consensus        91 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~-----  145 (399)
T PRK05122         91 CALSGLLYLLAGLLAAW--------------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH-----  145 (399)
T ss_pred             HHHHHHHHHHhhhhhcc--------------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh-----
Confidence            88877776654221000                    00245678999999999999999999999999999998     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHH
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR  305 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (597)
                       |++.++++....++|..++|.+++++.+..||++.+++.++..++..+.   ..+ .++.++++++..+..+.+...++
T Consensus       146 -r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~  220 (399)
T PRK05122        146 -TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL---ARP-RPAVPPVKGERLPFRRVLGRVWP  220 (399)
T ss_pred             -hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH---Hhc-CCCCCCCCccchhHHHHHHHHHH
Confidence             9999999999999999999999999999999999887765543332221   111 11111111110000000000000


Q ss_pred             hhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHH
Q 007580          306 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACT  385 (597)
Q Consensus       306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  385 (597)
                      .. .         .                      ..+.....  ...    ..|   ......+.. ...........
T Consensus       221 ~~-~---------~----------------------~~~~~~~~--~~~----~~~---~~~~~~~~~-~~~~~~~~~~~  258 (399)
T PRK05122        221 YG-M---------G----------------------LALASIGF--GTI----ATF---ITLYYAARG-WDGAALALTLF  258 (399)
T ss_pred             HH-H---------H----------------------HHHHHHHH--HHH----HHH---HHHHHHHcc-cccchHHHHHH
Confidence            00 0         0                      00000000  000    000   000000000 00000000000


Q ss_pred             HHHHHHHhcchhhHHHHHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchH
Q 007580          386 IMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSA  465 (597)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~  465 (597)
                      .+....     ..+ ..+...|       +.+..+.+..+.++.++++......                       .+.
T Consensus       259 ~~~~~~-----~~~-~~g~l~~-------r~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~  302 (399)
T PRK05122        259 GVAFVG-----ARL-LFGNLIN-------RLGGLRVAIVSLLVEILGLLLLWLA-----------------------PSP  302 (399)
T ss_pred             HHHHHH-----HHH-HHHHHHH-------HhccHHHHHHHHHHHHHHHHHHHHh-----------------------ccH
Confidence            000000     000 0000111       1222233444444444444433332                       233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCC
Q 007580          466 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT  545 (597)
Q Consensus       466 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~  545 (597)
                      +++++..++.|++.+...|.....+.+..|++.||+++|+++....+|..+++.+.+.+.+..|                
T Consensus       303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----------------  366 (399)
T PRK05122        303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG----------------  366 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------------
Confidence            4455667788888888888888888899999999999999999999999999999888776544                


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhh
Q 007580          546 GRFDYLYWLLAVLSVINFCAFLYSAY  571 (597)
Q Consensus       546 ~~~~~~f~~~a~l~~l~~~~~~~~~~  571 (597)
                        ++..|++.+++.++++++.+++.+
T Consensus       367 --~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        367 --YPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhcc
Confidence              467888888888887766655433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.94  E-value=1.8e-23  Score=223.40  Aligned_cols=182  Identities=17%  Similarity=0.172  Sum_probs=155.7

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (597)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~  143 (597)
                      .+++|..+....+..+++.+..+...... +.+.+++|.++.+.+++.+.+.++..++.++.|+++|| +|||+++.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~   87 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSV   87 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHH
Confidence            34678788888888888888877665554 56678899999999999999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (597)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~  223 (597)
                      ++..++.+++.++                            .+...+++.|++.|++.+...+...++++|.+|+++   
T Consensus        88 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---  136 (406)
T PRK11551         88 ALFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL---  136 (406)
T ss_pred             HHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH---
Confidence            8888888777765                            467788999999999999999999999999999998   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                         |++.+++++....+|..++|.+++.+.+..+|++.|++.+++.++..++.....+
T Consensus       137 ---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  191 (406)
T PRK11551        137 ---RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLP  191 (406)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence               9999999999999999999999999988899999999877655554444433333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.94  E-value=2.3e-23  Score=228.61  Aligned_cols=181  Identities=14%  Similarity=0.063  Sum_probs=158.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      ++|..+..+++..++..+....+...+| .+.+++|.+..+.+|+.+.|.++...+.+++|+++|| +|||+++.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~   80 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTL   80 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence            3577788888888998888777776655 5578899999999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccC-CCCCchhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF-DERSKDYK  224 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~-~~~~~~~~  224 (597)
                      +.++.++++++                            ++...++++|+++|+|.++..+.....+.+.+ |+++    
T Consensus        81 ~~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~----  128 (495)
T PRK14995         81 FGLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ----  128 (495)
T ss_pred             HHHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH----
Confidence            99999999987                            57889999999999999999998888887877 5566    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                        |+++++++....++|..+||.+++++.++.||||.|++...+.++.+++.....++
T Consensus       129 --r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~  184 (495)
T PRK14995        129 --RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPR  184 (495)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence              99999999999999999999999999999999999999887766665555555444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.3e-22  Score=209.29  Aligned_cols=182  Identities=13%  Similarity=0.143  Sum_probs=166.6

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (597)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~  143 (597)
                      .+..|..++.+.+..|+....-+....- .+-+.+++|.|..++++.++.|.++..++.|+-..+.|| +.||++++...
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gL-Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l   85 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGL-LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLL   85 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhc-hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHH
Confidence            3456667888888888887776766555 467889999999999999999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (597)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~  223 (597)
                      .+++++.++++++                            +|+.+++++|++.|+..|..++...++.+++.|+++   
T Consensus        86 ~lFi~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~---  134 (394)
T COG2814          86 ALFIVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK---  134 (394)
T ss_pred             HHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---
Confidence            9999999999998                            689999999999999999999999999999999999   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                         |++++++...+..++..+|.+++.++.|.+|||+.|++.+.+.+++++..+...|
T Consensus       135 ---~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         135 ---RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             ---hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence               9999999999999999999999999999999999999999888877777776666

>PRK12382 putative transporter; Provisional

Probab=99.93  E-value=5.8e-23  Score=218.59  Aligned_cols=374  Identities=11%  Similarity=0.022  Sum_probs=230.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .++.+.+..++..++.+...+.++.|+.+++|.|..+.++..+.+.++..++.++.|+++|| +||||++.++.++..++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGLA   94 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHHH
Confidence            45556666677777777777888889999999999999999999999999999999999999 89999999998877766


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      .+...+....+..                    ...+...++++|+++|++.+...+...+.+.|.+|+++      |++
T Consensus        95 ~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  148 (392)
T PRK12382         95 GLAYLLAAILPVS--------------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK  148 (392)
T ss_pred             HHHHHhhhccccc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence            5443332111000                    00467889999999999999988989999999999998      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhc
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (597)
                      +++++..+.++|..++|.+++++.+..||++.+.+..+..++.+.   ... +.++.+++++...+..+.....++. ..
T Consensus       149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~  223 (392)
T PRK12382        149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAGERPSLWSVVGLIWKP-GL  223 (392)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcccCchHHHHHHHHHHh-HH
Confidence            999999999999999999999999989999877655443222221   111 1111111100000111100000000 00


Q ss_pred             ccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHHHHHH
Q 007580          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN  389 (597)
Q Consensus       310 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  389 (597)
                      .     .. ++.                      +....+....     .++  .......+  ... .   .....+..
T Consensus       224 ~-----~~-l~~----------------------~~~~~~~~~~-----~~~--~~~~~~~~--~~~-~---~~~~~~~~  262 (392)
T PRK12382        224 G-----LA-LQG----------------------VGFAVIGTFV-----SLY--FASKGWAM--AGF-T---LTAFGGAF  262 (392)
T ss_pred             H-----HH-HHH----------------------HHHhHHHHHH-----HHH--HHhcCCch--hHH-H---HHHHHHHH
Confidence            0     00 000                      0000000000     000  00000000  000 0   00000000


Q ss_pred             HHHhcchhhHHHHHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHH
Q 007580          390 VILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLL  469 (597)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~  469 (597)
                      .. .+     ...+...|   |    .+..+.+..+..+.++++......                       .+..++.
T Consensus       263 ~~-~~-----~~~g~l~~---r----~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~  306 (392)
T PRK12382        263 VL-MR-----VLFGWMPD---R----FGGVKVAIVSLLVETVGLLLLWLA-----------------------PTAWVAL  306 (392)
T ss_pred             HH-HH-----HHHHHHHH---h----cCCCeehHHHHHHHHHHHHHHHHc-----------------------ccHHHHH
Confidence            00 00     00001111   1    112222334444444444433322                       2334445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchh
Q 007580          470 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFD  549 (597)
Q Consensus       470 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~  549 (597)
                      +..++.+++.+...|.....+.+.+|++.||+++|++++...+|+.+++.+.+.+.+..|                  +.
T Consensus       307 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g------------------~~  368 (392)
T PRK12382        307 AGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG------------------YP  368 (392)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------ch
Confidence            566778888888888888889999999999999999999999999999999998877554                  36


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 007580          550 YLYWLLAVLSVINFCAFLYSA  570 (597)
Q Consensus       550 ~~f~~~a~l~~l~~~~~~~~~  570 (597)
                      ..|.+.+++.+++.++.++..
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        369 SVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            778888888888777665443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=5.6e-23  Score=219.45  Aligned_cols=172  Identities=15%  Similarity=0.177  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~  151 (597)
                      +.++...++..++.+.+.+.++.|+++++|++..+.+...+.+.+...+..+++|+++|| +|||+++.++.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence            556677888889989999999999999999999999999999999999999999999999 8999999999999999888


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (597)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~  231 (597)
                      .+..+                            ++.+.+++.|++.|++.+...+...+++.|.+|+++      |++++
T Consensus        92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~  137 (400)
T PRK11646         92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF  137 (400)
T ss_pred             HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence            88765                            466788899999999999889999999999999988      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007580          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (597)
Q Consensus       232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  279 (597)
                      ++++...++|..+||.+++++. .+||++.|++.++..++..++....
T Consensus       138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~  184 (400)
T PRK11646        138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWL  184 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998 6799999998877665554443333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=4.5e-23  Score=221.41  Aligned_cols=371  Identities=15%  Similarity=0.063  Sum_probs=232.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 007580           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (597)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~  153 (597)
                      ++...++..++.......++.+ .++++.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~   99 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGL   99 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHH
Confidence            3344556666654445555555 45678899999999999999999999999999999 899999999888877777665


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH
Q 007580          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (597)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~  233 (597)
                      ++....    ..                   ++...+++.|++.|++.+...++..+.+.|.+|+++      |++..++
T Consensus       100 ~~~~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  150 (417)
T PRK10489        100 ALNAFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI  150 (417)
T ss_pred             HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence            542110    00                   356778889999999999888999999999999888      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccC-CCCCchhhHHHHHHHHHHhhhcccC
Q 007580          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPLTRVAQVLVAAFRKRHAAFS  312 (597)
Q Consensus       234 ~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  312 (597)
                      .+...++|..+||.+++++.+..+|+|.|++.++..+++.++.+. .++.++++ +..++..+..+......|++.    
T Consensus       151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  225 (417)
T PRK10489        151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR-LPALPPPPQPREHPLRSLLAGFRFLLASPV----  225 (417)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-CCCCCCCCcccccchHHHHHHHHHHHcChH----
Confidence            999999999999999999998889999998877666555444332 22221111 011111111000000000000    


Q ss_pred             ccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHHHHHHHHH
Q 007580          313 SSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVIL  392 (597)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (597)
                                                                                    +...+....+........
T Consensus       226 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~  243 (417)
T PRK10489        226 --------------------------------------------------------------VGGIALLGGLLTMASAVR  243 (417)
T ss_pred             --------------------------------------------------------------HHHHHHHHHHHHHHHhHH
Confidence                                                                          000000000000000000


Q ss_pred             hcchhhHHHHHhhhcccC--------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCc
Q 007580          393 TEFLTLSVQQAYTMNTHM--------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGY  452 (597)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~  452 (597)
                      ...+. +..+....+...                    +..++.+..+.+..+.++.+++++.....             
T Consensus       244 ~~~p~-~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------  309 (417)
T PRK10489        244 VLYPA-LADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------------  309 (417)
T ss_pred             HhhHH-HHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------
Confidence            00000 000000000000                    01111111222334444444444333221             


Q ss_pred             cccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 007580          453 EFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPK  532 (597)
Q Consensus       453 ~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~  532 (597)
                                .+.+.+....++.|++.+...+...+++.+.+|++.||+++|+++....+|..+|+.+.+.+.+..|   
T Consensus       310 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g---  376 (417)
T PRK10489        310 ----------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT---  376 (417)
T ss_pred             ----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc---
Confidence                      2334445566677888777778888899999999999999999999999999999999998877554   


Q ss_pred             CCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCc
Q 007580          533 KGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGND  584 (597)
Q Consensus       533 ~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~  584 (597)
                                     +...++..+++.++..++.+...+++|++++||.+++
T Consensus       377 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        377 ---------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             ---------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence                           2345666777777766767777788777777665543

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=8.1e-23  Score=217.82  Aligned_cols=176  Identities=15%  Similarity=0.127  Sum_probs=153.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~  146 (597)
                      .+|.++.+++..++...+.+.+.++++.|+++++|++..+.++..+.+.++..++.++.|+++|| +|||+++.++.++.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence            34467788888899999999999999999999999999999999999999999999999999999 89999999999888


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .++.+++.++                            ++...+++.+.+.+.+.+...++..+..+|.+|+++      
T Consensus        84 ~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------  129 (395)
T PRK10054         84 ASGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------  129 (395)
T ss_pred             HHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------
Confidence            8888877765                            456677778888888888888889999999999888      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      |++.+++.+...++|..++|.+++++.+ .+|++.|++.+++.++..++...
T Consensus       130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~  180 (395)
T PRK10054        130 KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI  180 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999875 69999999887776665544433

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=1.2e-22  Score=221.69  Aligned_cols=179  Identities=12%  Similarity=0.037  Sum_probs=154.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      .+.++.+.+..++..+..+.+.+.++.+. +++|.+..+.+++.+.+.++..++.+++|+++|| +|||++++.+.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHH
Confidence            33577788888888888888888777665 5799999999999999999999999999999999 899999999988888


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++.+++.++                            ++...++++|+++|++.+...+...+.+.|.+|+++      |
T Consensus        87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~  132 (471)
T PRK10504         87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y  132 (471)
T ss_pred             HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence            888877765                            456788999999999999999999999999999888      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      ++.+++++...++|..++|.+++++.++.|||+.|++..+...+..++.....++
T Consensus       133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999998877666555554444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.93  E-value=2.4e-22  Score=214.86  Aligned_cols=181  Identities=13%  Similarity=0.102  Sum_probs=149.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      ++.+...+.+.+.+++..+....+.+.++ .+.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+++.++.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~   86 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVA   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHH
Confidence            34444555555556666666566666555 4668899999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      +..++.+++..+                            ++...+++.|+++|++.+...+...+.+.|.+|+++    
T Consensus        87 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~----  134 (406)
T PRK15402         87 FFILTCLAILLA----------------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD----  134 (406)
T ss_pred             HHHHHHHHHHHH----------------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH----
Confidence            988888887765                            456788899999999999988899999999999988    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                        |.+.+++......+|..++|.+++++.++.+||+.|++.++..++..+..+...+
T Consensus       135 --~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  189 (406)
T PRK15402        135 --AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMP  189 (406)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCC
Confidence              8898999888888999999999999999899999999887776665554444333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.92  E-value=3.1e-23  Score=226.56  Aligned_cols=185  Identities=16%  Similarity=0.131  Sum_probs=141.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------CCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--------HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT  138 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--------~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~  138 (597)
                      +.+.++...+..+........+.+. .+.+++.+        +.+..+.+++.+.+.++..++++++|+++|| +|||++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~   87 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGT-VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDS   87 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHh-HHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHH
Confidence            4555566666666665554433333 34456655        8888999999999999999999999999999 899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 007580          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (597)
Q Consensus       139 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~  218 (597)
                      ++++.+++.++.+.++++........                .++......++++|+++|++.|+..+...++++|++|+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~  151 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIG----------------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA  151 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccc----------------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh
Confidence            99999999988887776421100000                00113456788999999999999999999999999999


Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHHHHHHH
Q 007580          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISNML  275 (597)
Q Consensus       219 ~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~~~~~~~~~  275 (597)
                      ++      |++.++++..+..+|..+++.++..+.        +..|||+.|++.++..++..++
T Consensus       152 ~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~  210 (479)
T PRK10077        152 HI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML  210 (479)
T ss_pred             hh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH
Confidence            99      999999999999999999988776553        3569999999877666554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=2.3e-22  Score=211.89  Aligned_cols=158  Identities=14%  Similarity=0.117  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCc
Q 007580           89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN  168 (597)
Q Consensus        89 ~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  168 (597)
                      .....+.+.+++|++..+.+++.+.+.+++.++.++.|+++|| +|||+++..+.+....+.. +....           
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~-~~~~~-----------   76 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAG-RLLDP-----------   76 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH-HHHHh-----------
Confidence            3444567788999999999999999999999999999999999 7999987665554444332 22210           


Q ss_pred             ccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 007580          169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL  248 (597)
Q Consensus       169 c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i  248 (597)
                                      .++..+++.|+++|+|.+. .+.....++|++|+++      |++++++...+..+|..+++++
T Consensus        77 ----------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~  133 (368)
T TIGR00903        77 ----------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAA  133 (368)
T ss_pred             ----------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                            3578899999999999986 4555566699999988      9999999999999999999999


Q ss_pred             HHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       249 ~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      ++++.++.|||+.|++.+++.++..++++...|+
T Consensus       134 ~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~  167 (368)
T TIGR00903       134 GLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPA  167 (368)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999998777665555555444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.92  E-value=2e-22  Score=215.96  Aligned_cols=182  Identities=15%  Similarity=0.071  Sum_probs=156.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      |.+|+.++.+.+..+++.+....+... .+.+++++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~   81 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFA-GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMV   81 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHH-HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHH
Confidence            346777888888778878776665554 458999999999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      ++.++..+++++                            ++...+++.|++.|++.++..|....+++|++|+++    
T Consensus        82 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~----  129 (412)
T TIGR02332        82 LWGIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF----  129 (412)
T ss_pred             HHHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH----
Confidence            999999998886                            567889999999999999999999999999999988    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhh------ccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                        |++.+++++....+|..++|.+++++.+      ..|||+.|++.++..++..++.++..++
T Consensus       130 --rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~  191 (412)
T TIGR02332       130 --RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD  191 (412)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence              9999999999999999999999999864      3699999999877665554444444443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.92  E-value=7.5e-22  Score=213.10  Aligned_cols=171  Identities=11%  Similarity=0.042  Sum_probs=145.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~  148 (597)
                      +..+..++..++..+..+.+...++ .+.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMP-EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHH
Confidence            4445555555666665555555554 4456799999999999999999999999999999999 8999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                      +.++++++                            .+...+++.|++.|++.|...+...++++|++|+++      |+
T Consensus       101 ~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg  146 (434)
T PRK11663        101 INILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RG  146 (434)
T ss_pred             HHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HH
Confidence            98888876                            567788899999999999999999999999999988      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~  275 (597)
                      +.+++++...++|..++|.+++++.+.+|||+.|++.++..++..++
T Consensus       147 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~  193 (434)
T PRK11663        147 GWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLF  193 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887765544333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=8.3e-23  Score=224.69  Aligned_cols=179  Identities=15%  Similarity=0.096  Sum_probs=138.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI  139 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~  139 (597)
                      +.+++.+.++.+..+........+....+ .+..+     .+.+..+.+++.+.+.++..++.+++|+++|| +|||+++
T Consensus        12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~   89 (502)
T TIGR00887        12 WQHFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVY   89 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHH
Confidence            34555666666667777766544444333 34443     23455677889999999999999999999999 8999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (597)
Q Consensus       140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (597)
                      .++.+++.++.++++++...   .                   ...+...++++|+++|++.|+..+....+++|.+|++
T Consensus        90 ~~~~~~~~v~~~~~~~~~~~---~-------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~  147 (502)
T TIGR00887        90 GMELIIMIIATVASGLSPGS---S-------------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK  147 (502)
T ss_pred             HHHHHHHHHHHHHHHHccCc---c-------------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh
Confidence            99999999998888765210   0                   0023678999999999999999999999999999999


Q ss_pred             CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-----------------------ccchHHHHHHHHHHHHHHH
Q 007580          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISN  273 (597)
Q Consensus       220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~-----------------------~~gw~~~f~i~~~~~~~~~  273 (597)
                      +      |++..++++....+|..+++.++.++..                       ..+||+.|.+.++..++..
T Consensus       148 ~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~  218 (502)
T TIGR00887       148 W------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL  218 (502)
T ss_pred             h------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH
Confidence            9      9999999999999999999988765532                       2479999987766554433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.92  E-value=6.2e-22  Score=210.89  Aligned_cols=151  Identities=12%  Similarity=0.106  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580           86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (597)
Q Consensus        86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  165 (597)
                      +.+.+. .+.+.+++|+|..+.++..+.+.++..++.++.|+++|| +|||+++..+.+++.++.++++++         
T Consensus        26 ~~~~~~-lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a---------   94 (393)
T PRK09705         26 TSVGPL-LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELY---------   94 (393)
T ss_pred             hccchh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHC---------
Confidence            445444 456788999999999999999999999999999999999 899999999999999999999987         


Q ss_pred             CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (597)
Q Consensus       166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~  245 (597)
                                         +++..++++|+++|+|.+...+....++.+++| ++      |+.+++++..+.++|..++
T Consensus        95 -------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g  148 (393)
T PRK09705         95 -------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG  148 (393)
T ss_pred             -------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence                               567789999999999999999999999999997 66      8999999999999999999


Q ss_pred             HHHHHHhhhcc-chHHHHHHHHHHHHHHH
Q 007580          246 FTLVVYIQMEH-GWGSAFGALAIAMGISN  273 (597)
Q Consensus       246 p~i~~~i~~~~-gw~~~f~i~~~~~~~~~  273 (597)
                      +.+++++.++. +||+.+.+.++..++.+
T Consensus       149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        149 AAITPWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999988875 89998876555444333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=6.7e-22  Score=206.94  Aligned_cols=173  Identities=16%  Similarity=0.066  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 007580           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (597)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~  153 (597)
                      +++..++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHH
Confidence            456667777776666666676665 589999999999999999999999999999999 899999999998888887777


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH
Q 007580          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (597)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~  233 (597)
                      .+.....                       +.+...++++|++.|++.+...+...++++|++|+++      |++.+++
T Consensus        82 ~~~~~~~-----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  132 (365)
T TIGR00900        82 PFVALLG-----------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL  132 (365)
T ss_pred             HHHHHcC-----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence            7652100                       0267889999999999999999999999999999988      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       234 ~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      ++....+|..++|.+++++.+..||++.|++.++..+++.++.+
T Consensus       133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987776555544433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=3.2e-21  Score=205.51  Aligned_cols=174  Identities=13%  Similarity=0.127  Sum_probs=149.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      +..|+.+..+....++.....|...+.++. +.+++|+++.+.++.++.+.++..++.++.|+++|| +|||+++.++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~   93 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAV   93 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHH
Confidence            446766666666655555555655555544 567899999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      +..++.+++.++                            ++.+.+++.|+++|++.+...+...+++.|++|+++    
T Consensus        94 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~----  141 (394)
T PRK10213         94 LLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT----  141 (394)
T ss_pred             HHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH----
Confidence            999988888776                            578899999999999999999999999999999998    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~  274 (597)
                        |+++.+++....++|..++|.+++++.+.+|||+.|++.++..++..+
T Consensus       142 --~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        142 --VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence              999999999999999999999999999999999999987765554433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.91  E-value=1.8e-21  Score=207.91  Aligned_cols=381  Identities=13%  Similarity=0.047  Sum_probs=231.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH-----HHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      ....+++..++..++++...+.++.|++ ++|.+..+     .+++.+.+.++..++.++.|+++|| +|||+++.++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~   92 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHH
Confidence            4555666777888887777788888775 58887554     3788888999999999999999999 899999999998


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      +..++.+++...                            .+...+++.|++.|++.+ ..+.....+.|.+|+++    
T Consensus        93 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~----  139 (408)
T PRK09874         93 GMGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK----  139 (408)
T ss_pred             HHHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh----
Confidence            888888777665                            467788999999999865 56777888999999888    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHH
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAF  304 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (597)
                        |++..++++...++|..++|.+++++.+..+|++.|++.++..++..++.+...++..+..++.+. .+..+. ....
T Consensus       140 --~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~  215 (408)
T PRK09874        140 --SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LHMREV-VTSL  215 (408)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hHHHHH-HHhC
Confidence              999999999999999999999999999989999999988876665555444433322111000000 000000 0000


Q ss_pred             HhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHH
Q 007580          305 RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPAC  384 (597)
Q Consensus       305 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  384 (597)
                      |                               +......+-..............++   ......+.......... ..
T Consensus       216 ~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~  260 (408)
T PRK09874        216 K-------------------------------NPKLVLSLFVTTLIIQVATGSIAPI---LTLYVRELAGNVSNIAF-IS  260 (408)
T ss_pred             c-------------------------------CCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccchHHHH-HH
Confidence            0                               0000000000000000000000000   00000000000000000 00


Q ss_pred             HHHHHHHHhcchhhHHHHHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccch
Q 007580          385 TIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS  464 (597)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s  464 (597)
                      . +...... ... ..... ...   +..++.+..+.+..+.++..++++.....                       .+
T Consensus       261 g-~~~~~~~-l~~-~~~~~-~~g---~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~  310 (408)
T PRK09874        261 G-MIASVPG-VAA-LLSAP-RLG---KLGDRIGPEKILITALIFSVLLLIPMSFV-----------------------QT  310 (408)
T ss_pred             H-HHHHHHH-HHH-HHHHH-HHH---HHHhccccchhHHHHHHHHHHHHHHHHHh-----------------------cc
Confidence            0 0000000 000 00000 000   11122222233344444443333332222                       23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCC
Q 007580          465 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  544 (597)
Q Consensus       465 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~  544 (597)
                      .+.+....++.|++.+...|...+.+.+..|++.+|..+++++....+|..+|+.+.+.+.+..|               
T Consensus       311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g---------------  375 (408)
T PRK09874        311 PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG---------------  375 (408)
T ss_pred             HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc---------------
Confidence            34455566778888889999999999999999999999999999999999999999998776443               


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007580          545 TGRFDYLYWLLAVLSVINFCAFLYSAYR  572 (597)
Q Consensus       545 ~~~~~~~f~~~a~l~~l~~~~~~~~~~~  572 (597)
                         +...|++.+++.+++.++.++..++
T Consensus       376 ---~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        376 ---FRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence               4678888888888887776655443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.91  E-value=1.2e-21  Score=206.64  Aligned_cols=156  Identities=20%  Similarity=0.177  Sum_probs=139.0

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 007580           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (597)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~  170 (597)
                      ...+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..+++++              
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~--------------   79 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFA--------------   79 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHH--------------
Confidence            33456889999999999999999999999999999999999 899999999999999998888876              


Q ss_pred             ccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007580          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (597)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~  250 (597)
                                    .+...++++|++.|++.+...+....++.|.+|+++      |++.++++....++|..++|.+++
T Consensus        80 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893        80 --------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             --------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHH
Confidence                          467889999999999999999999999999999988      999999999999999999999999


Q ss_pred             HhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          251 YIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       251 ~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      ++.+..+|++.|++.++..++..++.+...+
T Consensus       140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (399)
T TIGR00893       140 WILIHFSWQWAFIIEGVLGIIWGVLWLKFIP  170 (399)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHhhheec
Confidence            9999999999999887766655554444333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.91  E-value=4.8e-21  Score=210.00  Aligned_cols=175  Identities=17%  Similarity=0.120  Sum_probs=132.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH-HHH-----HHHHHHHHHHHHhhhhHHHhhcccchHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSN-----AVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-a~~-----~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~  141 (597)
                      ++.++...+..+++.+.+. +.....+++.++++.+... ..+     +.+...++..++.+++|+++|| +|||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence            4566666777788887754 4555667888888643321 111     2466778899999999999999 899999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCc
Q 007580          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (597)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~  221 (597)
                      +.+++.++.++++++.++....                    -.....+++.|+++|+|.|+..+...++++|++|+++ 
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g--------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~-  151 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIG--------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK-  151 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHH--------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence            9999999999999872210000                    0001248899999999999999999999999999999 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHH
Q 007580          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG  270 (597)
Q Consensus       222 ~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~~~~  270 (597)
                           |+...++...+..+|..+++.+...+.        .++|||+.|++.++..+
T Consensus       152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence                 999999988888888888876654442        25799999998665433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.91  E-value=8.8e-22  Score=213.74  Aligned_cols=176  Identities=14%  Similarity=0.082  Sum_probs=137.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~  146 (597)
                      +|..+...++..+......+++... .+.+.+++|.+.++.+++.+.+.++..++.+++|+++|| +|||++++.+.++.
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~   94 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVF-FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLA   94 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhh-HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHH
Confidence            4544444444333222222333333 456678999999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHH-HHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      .++.++++++                            .+...+++ .|++.|++.+...+...+++.++++ ++     
T Consensus        95 ~~~~~~~~~~----------------------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~-----  140 (455)
T TIGR00892        95 SLGMILASFS----------------------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR-----  140 (455)
T ss_pred             HHHHHHHHHh----------------------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh-----
Confidence            9888888776                            34555554 5688899998776677788889885 66     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  279 (597)
                       |+++.++.+.+..+|..++|.+++++.+.+|||+.|++.+++.+++.+..++.
T Consensus       141 -r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       141 -RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             -HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence             99999999999999999999999999999999999999888766555444443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.91  E-value=1e-20  Score=202.85  Aligned_cols=166  Identities=14%  Similarity=0.090  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007580           81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK  160 (597)
Q Consensus        81 ~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~  160 (597)
                      ..+......+.++ .+.+++|.+..+.++.++.|.++..++.+++|+++|| +|||+++..+.+++.++.+.+.++    
T Consensus        28 ~~~~~~~~~p~l~-~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a----  101 (413)
T PRK15403         28 AYLTTDLIQPGII-NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFT----  101 (413)
T ss_pred             HHHHHHhhccCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHc----
Confidence            3334333334433 4788999999999999999999999999999999999 899999999999999999888876    


Q ss_pred             ccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007580          161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV  240 (597)
Q Consensus       161 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~l  240 (597)
                                              ++...++++|+++|++.+...+.....+.|.+|+++      |.+.++++....++
T Consensus       102 ------------------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  151 (413)
T PRK15403        102 ------------------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLV  151 (413)
T ss_pred             ------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence                                    567889999999999998777777888999999988      99999999999999


Q ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       241 g~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      |..+||.+++++.++.|||+.|++.++..+++.++.+...++
T Consensus       152 ~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~  193 (413)
T PRK15403        152 APIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPE  193 (413)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999988899999999887766665544443443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.90  E-value=6.6e-21  Score=200.92  Aligned_cols=173  Identities=11%  Similarity=0.039  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHH-HHHHHHHHHHHH
Q 007580           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGI  153 (597)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~-~~~l~~~g~~~~  153 (597)
                      ++..++..++.....+.++.|+.+++|.+..+.+++.+.+.+...+..++.|+++|| +||||.+++ +.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHH
Confidence            345677788888888999999999999999999999999999999999999999999 899887655 455555566666


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH--H
Q 007580          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF--F  231 (597)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~--~  231 (597)
                      +.+                            +++..+++.|+++|.+.+...|...++..|..|++.      |...  .
T Consensus        82 ~~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~  127 (375)
T TIGR00899        82 AWN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFS  127 (375)
T ss_pred             Hhc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHH
Confidence            654                            456778888988888888888888888888887665      5543  5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      ++.....++|..++|.+++++.+..|||+.|++.++..++..++.+...++
T Consensus       128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  178 (375)
T TIGR00899       128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPS  178 (375)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            777778899999999999999998999999999887666555554443443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.90  E-value=1.8e-21  Score=212.76  Aligned_cols=177  Identities=16%  Similarity=0.130  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .+..+++..++..+....+.. ..+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.+++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNV-AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence            455566666777777554444 4566778999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      .++++.+                            ++...++++|+++|++.+...+...+++.|.+|+++      |++
T Consensus        81 ~~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~  126 (485)
T TIGR00711        81 SLLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGR  126 (485)
T ss_pred             HHHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHH
Confidence            9988876                            467889999999999999999999999999999988      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      ++++++....+|..++|.+++++.++.||||.|++.++..++..++.+...++
T Consensus       127 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  179 (485)
T TIGR00711       127 AMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPR  179 (485)
T ss_pred             HHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999998877666555554444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=1.3e-20  Score=199.98  Aligned_cols=177  Identities=13%  Similarity=0.104  Sum_probs=152.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~  148 (597)
                      +.++.+.+..++.....+...+.+ +.+.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+++.++.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVL-TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhCh-HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHH
Confidence            356667777777777766666655 45678899999999999999999999999999999999 8999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                      +.++++++                            ++.+.+++.|++.|++.+...+....++.|++|+++      |+
T Consensus        81 ~~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~  126 (382)
T PRK10091         81 GNAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VT  126 (382)
T ss_pred             HHHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hh
Confidence            99988876                            567899999999999999988888999999999888      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      +.++++..+..+|..++|.+++++.+..+||+.|++.++..++..+..+...|
T Consensus       127 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp  179 (382)
T PRK10091        127 AAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVP  179 (382)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999899999999988766555444443333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.90  E-value=7.2e-22  Score=205.82  Aligned_cols=171  Identities=20%  Similarity=0.245  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (597)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~  154 (597)
                      ++..++..++...+.+.++.++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhh
Confidence            455677777767667776668899999999999999999999999999999999999 8999999999999999866665


Q ss_pred             HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (597)
Q Consensus       155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~  234 (597)
                      ++                            .+...++++|++.|++.+...+...+++.|.+|+++      |++.+++.
T Consensus        81 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~  126 (352)
T PF07690_consen   81 FA----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL  126 (352)
T ss_dssp             HH----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred             hh----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence            54                            244589999999999999999999999999999998      99999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580          235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (597)
Q Consensus       235 ~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~  280 (597)
                      +...++|..++|.+++++.+..+||+.|++.++..++..++.....
T Consensus       127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~  172 (352)
T PF07690_consen  127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFL  172 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhh
Confidence            9999999999999999999889999999998888777766433333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.90  E-value=7.9e-22  Score=213.87  Aligned_cols=151  Identities=18%  Similarity=0.255  Sum_probs=128.5

Q ss_pred             HHHHHHhhCCC--------hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 007580           93 VTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (597)
Q Consensus        93 ~~yl~~~~~~s--------~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  164 (597)
                      .+.+..+++.+        ..+.+++.+.+.++..++.++.|+++|| +|||++++++.+++.++.+++.+....     
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~-----  124 (481)
T TIGR00879        51 LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAFA-----  124 (481)
T ss_pred             hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence            34455566666        7899999999999999999999999999 899999999999999998888765220     


Q ss_pred             CCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 007580          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (597)
Q Consensus       165 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l  244 (597)
                                          .+...++++|+++|+|.+...+...++++|.+|+++      |++.+++++...++|..+
T Consensus       125 --------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~  178 (481)
T TIGR00879       125 --------------------LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILV  178 (481)
T ss_pred             --------------------cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHH
Confidence                                345688999999999999999999999999999999      999999999999999999


Q ss_pred             HHHHH---HHhhhccchHHHHHHHHHHHHHHHHH
Q 007580          245 AFTLV---VYIQMEHGWGSAFGALAIAMGISNML  275 (597)
Q Consensus       245 ~p~i~---~~i~~~~gw~~~f~i~~~~~~~~~~~  275 (597)
                      ++.++   +.+.+..+||+.|++.++..++..+.
T Consensus       179 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~  212 (481)
T TIGR00879       179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLG  212 (481)
T ss_pred             HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHH
Confidence            99999   66667789999999866554444333

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.90  E-value=4.7e-21  Score=203.84  Aligned_cols=174  Identities=13%  Similarity=0.189  Sum_probs=152.5

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHH
Q 007580           63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (597)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~  142 (597)
                      ..+++|+.+..+.+..++..+..+.+... .+.+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~   83 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV-LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTS   83 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHH
Confidence            34578888888888889998887666555 456788999999999999999999999999999999999 8999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch
Q 007580          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (597)
Q Consensus       143 ~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~  222 (597)
                      .++..++.++++++                            .++..+++.|++.|++.+...+...+++.|.+|+++  
T Consensus        84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--  133 (405)
T TIGR00891        84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL--  133 (405)
T ss_pred             HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence            99999888888775                            467788999999999999999999999999999998  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHH
Q 007580          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGIS  272 (597)
Q Consensus       223 ~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g--w~~~f~i~~~~~~~~  272 (597)
                          |++..++++....+|..+++.+++.+.+..+  ||+.|++.++..++.
T Consensus       134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence                9999999999999999999999999887766  999998765544433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=2.9e-20  Score=196.56  Aligned_cols=179  Identities=18%  Similarity=0.166  Sum_probs=150.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~  146 (597)
                      +++.++.+.+..++..++.....+.+ +++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHH
Confidence            34445555555566666655555544 56778999999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .++.+++..+                            ++...+++.|++.|++.+...+...+++.|.+|+++      
T Consensus        81 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------  126 (385)
T TIGR00710        81 ALSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------  126 (385)
T ss_pred             HHHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence            9888888775                            467788999999999999999999999999999888      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      |++.+++++....+|..++|.+++++.+..+|++.|++.++..++..++.+...+
T Consensus       127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (385)
T TIGR00710       127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILP  181 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999899999999887766655555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03699 putative transporter; Provisional

Probab=99.90  E-value=1.9e-20  Score=199.53  Aligned_cols=174  Identities=7%  Similarity=0.058  Sum_probs=147.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      +|||..+...+..++.....+.+...+ +.+.+++|+|.++.+++.+.+.++..++.+++|+++|| +|||+++.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVM-GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence            466778887777777777766665555 45678899999999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      ..++.+++.++                            ++...+++.|+++|++.+...+...+.+.|.+|+++     
T Consensus        82 ~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~-----  128 (394)
T PRK03699         82 MILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ-----  128 (394)
T ss_pred             HHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch-----
Confidence            99888888876                            467788999999999999999999999999999888     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHH
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML  275 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~-~~gw~~~f~i~~~~~~~~~~~  275 (597)
                       |+..++..+....+|+.++|.+.+++.. ..|||+.|.+.++..++..++
T Consensus       129 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        129 -RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence             9999998888889999999999988764 579999999877665544433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.90  E-value=2.6e-20  Score=200.96  Aligned_cols=177  Identities=16%  Similarity=0.208  Sum_probs=132.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CChHHHHHHHHHH---HHHHHHHhhhhHHHhhcccchHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNF---LGISQASSVLGGFLADAYLGRYWTIA  140 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~a~~~~~~~---~~~~~~~~~~~G~lsD~~~GR~~~~~  140 (597)
                      +++.+....+..+++.+.+.. .+.+.+++.++++   .+..+.+...+.+   .++..++.+++|+++|| +|||+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~   97 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHH
Confidence            444455555667777777555 5666778888885   4555433333444   44445899999999999 89999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 007580          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (597)
Q Consensus       141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~  220 (597)
                      ++.+++.++.++++++..+....                    ......+++.|+++|+|.|+..+...++++|++|+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~  157 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR  157 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence            99999999999988762210000                    0123568899999999999999999999999999998


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHHH
Q 007580          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI  271 (597)
Q Consensus       221 ~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~~~~~  271 (597)
                            |+...++.+.+.+.|..+++.+...+.        ..+|||+.|++.++..++
T Consensus       158 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll  210 (432)
T PRK10406        158 ------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV  210 (432)
T ss_pred             ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence                  999999988888888888887765543        257999999986665443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.90  E-value=5e-21  Score=201.14  Aligned_cols=174  Identities=13%  Similarity=0.036  Sum_probs=142.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      |+.+....+..+.... .|.. +.+.+++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~   79 (377)
T TIGR00890         3 WYVLVGTVIMCFTSGY-VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYG   79 (377)
T ss_pred             EEEeHHHHHHHHHhhH-Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHH
Confidence            4444444444443333 3444 445678889999999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++.++++++                            ++...++++|++.|++.+...+.....+.+++| ++      |
T Consensus        80 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~  124 (377)
T TIGR00890        80 LGFTFYAIA----------------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------R  124 (377)
T ss_pred             HHHHHHHHH----------------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------c
Confidence            999888887                            577889999999999999888888888888886 45      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  279 (597)
                      ++..+++..+.++|..+++.+.+.+.+..|||+.|++.++..++..+..+..
T Consensus       125 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890       125 GLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             HHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998877777777777899999998887766655444433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.89  E-value=1.3e-20  Score=202.57  Aligned_cols=166  Identities=16%  Similarity=0.181  Sum_probs=146.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      .+|+.+....+..+...+..+.. .++.+++.+++|+++.+.++..+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHH
Confidence            45556666677777777775554 445567889999999999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      ..++..+++++                            .+...++++|++.|++.+...+....++.|.+|+++     
T Consensus        93 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~-----  139 (426)
T PRK12307         93 YSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL-----  139 (426)
T ss_pred             HHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH-----
Confidence            99999888876                            567889999999999999999999999999999998     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHH
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  267 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~  267 (597)
                       |+++.+++..+..+|..+++.+.+++.+..|||+.|++.++
T Consensus       140 -r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        140 -KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             -hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence             99999999999999999999999999888999999987544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.89  E-value=2.7e-20  Score=197.43  Aligned_cols=155  Identities=15%  Similarity=0.170  Sum_probs=138.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      .+.++.+++..++..++...+.+.++.|+. ++|.|..+++++.+.+.++..+++++.|+++|| +|||+++.++.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHH
Confidence            346888888889999998888888887776 689999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++...++++                            ++...++++|+++|++.+...+...+.+.|..++++      |
T Consensus        83 ~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~  128 (381)
T PRK03633         83 AGCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------R  128 (381)
T ss_pred             HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H
Confidence            998888876                            567889999999999999998888888889888887      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw  258 (597)
                      ++.++++....++|..+||.+++++.+...|
T Consensus       129 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  159 (381)
T PRK03633        129 GRLLAAYMMVYYLGTVLGQLLVSKVSTELMS  159 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            9999999999999999999999998775433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.89  E-value=1.4e-20  Score=195.45  Aligned_cols=345  Identities=18%  Similarity=0.205  Sum_probs=238.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (597)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~  152 (597)
                      .+.+..++..+..+...+.++.|. +++|.+..+.++..+.+.++..++.++.|+++|| +|||+.+.++.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHH
Confidence            455666777788777777776665 5679999999999999999999999999999999 89999999999999999988


Q ss_pred             HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHH
Q 007580          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (597)
Q Consensus       153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~  232 (597)
                      +...                            ++...+++.|++.|++.+...+...+++.|.+|+++      |++.++
T Consensus        81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  126 (352)
T cd06174          81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG  126 (352)
T ss_pred             HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence            8876                            467889999999999999999999999999999988      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHH-HHhhhccc
Q 007580          233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAA-FRKRHAAF  311 (597)
Q Consensus       233 ~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  311 (597)
                      +.+...++|..++|.+++++.+..+|++.|++.++..++..++.....             +......... ...-... 
T Consensus       127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-  192 (352)
T cd06174         127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RLLLLLALAFFLLSFGYY-  192 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHHH-
Confidence            999999999999999999999988999999988877666555443322             1111110000 0000000 


Q ss_pred             CccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHHHHHHHH
Q 007580          312 SSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVI  391 (597)
Q Consensus       312 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (597)
                             .+                    ..+...  .. ...    ..+      ...+. .... ....+...+....
T Consensus       193 -------~~--------------------~~~~~~--~~-~~~----~~~------~~~~~-~~~~-~~~~~~~~i~~~~  230 (352)
T cd06174         193 -------GL--------------------LTYLPL--YL-QEV----LGL------SAAEA-GLLL-SLFGLGGILGALL  230 (352)
T ss_pred             -------HH--------------------HHHHHH--HH-HHh----cCC------CHHHH-HHHH-HHHHHHHHHHHHH
Confidence                   00                    000000  00 000    000      00011 0000 0000011000000


Q ss_pred             HhcchhhHHHHHhhhcccCCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHH
Q 007580          392 LTEFLTLSVQQAYTMNTHMGHPRGASQLQ-RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLI  470 (597)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~  470 (597)
                          ..      ...|       +.+.+. .+..+.++..++.+.....                       .+...+..
T Consensus       231 ----~~------~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------------~~~~~~~~  270 (352)
T cd06174         231 ----GG------LLSD-------RLGRRRLLLLIGLLLAALGLLLLALA-----------------------PSLALLLV  270 (352)
T ss_pred             ----HH------HHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHH
Confidence                00      0111       111222 4556666666666655543                       23556677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhH
Q 007580          471 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY  550 (597)
Q Consensus       471 ~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~  550 (597)
                      ..++.+++.....+...+++.+..|++.|++++|+.+....+|..+++.+.+.+.+..+                  +..
T Consensus       271 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~------------------~~~  332 (352)
T cd06174         271 ALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG------------------YGG  332 (352)
T ss_pred             HHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------------------cch
Confidence            78889999999999999999999999999999999999999999999999998765332                  256


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007580          551 LYWLLAVLSVINFCAFL  567 (597)
Q Consensus       551 ~f~~~a~l~~l~~~~~~  567 (597)
                      .|++.+++.+++.++++
T Consensus       333 ~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         333 VFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHhe
Confidence            67888888877766654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09952 shikimate transporter; Provisional

Probab=99.89  E-value=1.1e-19  Score=196.48  Aligned_cols=178  Identities=16%  Similarity=0.163  Sum_probs=133.1

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHH-----HHHHHHHHHHhhhhHHHhhcccchH
Q 007580           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRY  136 (597)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~a~~~~-----~~~~~~~~~~~~~~G~lsD~~~GR~  136 (597)
                      ..++|+.+....+..+++......+....+.++.+++  +.++.. ++..     +...++..++.++.|+++|| +|||
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr   94 (438)
T PRK09952         17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRK   94 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccH
Confidence            3445667777777778887776655555555666665  676653 4332     22334566778889999999 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccC
Q 007580          137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF  216 (597)
Q Consensus       137 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~  216 (597)
                      +++.++.+++.++.++++++.+.....                    -.....+++.|+++|++.|+..+....++.|++
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~  154 (438)
T PRK09952         95 RMLMLTVWMMGIATALIGLLPSFSTIG--------------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA  154 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcHHHHH--------------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence            999999999999999998872210000                    001225888999999999999999999999999


Q ss_pred             CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHHHH
Q 007580          217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAM  269 (597)
Q Consensus       217 ~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~~~  269 (597)
                      |+++      |+...+....+..+|..++..+..++.        +.+|||+.|++.++..
T Consensus       155 p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~  209 (438)
T PRK09952        155 PKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV  209 (438)
T ss_pred             CCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence            9998      999999988888999988887776654        2579999999876654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.89  E-value=3.2e-21  Score=210.14  Aligned_cols=182  Identities=14%  Similarity=0.045  Sum_probs=141.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~  146 (597)
                      .|+.+...++..++..+....+... .+.+.+++|++..+.+++.+.+.+++.++.+++|+++|| +|||+++.++.++.
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~-~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~  104 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAA-QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILS  104 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhh-hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHH
Confidence            3334444444444444444444433 456788999999999999999999999999999999999 89999999988887


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .++...++......                       ..+...+++.|+++|++.+...|....+++|++|+++      
T Consensus       105 ~~~~~~~~~~~~~~-----------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------  155 (467)
T PRK09556        105 AICMLGFGASLGSG-----------------------SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------  155 (467)
T ss_pred             HHHHHHHHHHHhcc-----------------------cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------
Confidence            77776666531100                       0467899999999999999999999999999999999      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHHHHHHh
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFFIG  279 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~---gw~~~f~i~~~~~~~~~~~~~~~  279 (597)
                      |+++++++..+.++|+.+++.+..++....   +|+..|.+.++..++..++.++.
T Consensus       156 rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~  211 (467)
T PRK09556        156 RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY  211 (467)
T ss_pred             eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988776643   59988887776655444444433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.89  E-value=6e-21  Score=207.90  Aligned_cols=149  Identities=14%  Similarity=0.131  Sum_probs=130.9

Q ss_pred             hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 007580           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (597)
Q Consensus        99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  178 (597)
                      +++++..+.+++.+.+.+++.++.+++|+++|| +|||+++.++.++..++.+++..+..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            688999999999999999999999999999999 89999999999988888777655421                    


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-c
Q 007580          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G  257 (597)
Q Consensus       179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~-g  257 (597)
                            .+...+++.|+++|++.+...+....+++|++|+++      |++++++++.+.++|..++|.+++++.+.. |
T Consensus       129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g  196 (465)
T TIGR00894       129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG  196 (465)
T ss_pred             ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                  245678999999999999999999999999999999      999999999999999999999999999884 9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhc
Q 007580          258 WGSAFGALAIAMGISNMLFFIGT  280 (597)
Q Consensus       258 w~~~f~i~~~~~~~~~~~~~~~~  280 (597)
                      ||+.|++.++..++..++++...
T Consensus       197 w~~~f~i~~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       197 WPMIFYVFGIVGCAWSLLWFVFP  219 (465)
T ss_pred             CCeehhhhhHHHHHHHHHHHHHh
Confidence            99999998877665555444433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.89  E-value=5.7e-20  Score=199.50  Aligned_cols=159  Identities=11%  Similarity=0.057  Sum_probs=127.9

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 007580           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (597)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~  170 (597)
                      ...+|+.++ |++..+.+++.+.+.++..++.+++|+++|| +|||++++++.++..++.+.++++...           
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~-----------  116 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWA-----------  116 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence            345678877 9999999999999999999999999999999 899999999999999888877765210           


Q ss_pred             ccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 007580          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV  249 (597)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~-l~p~i~  249 (597)
                                   ..+...+++.|++.|++.+...+.....+.|++|+++      |++++++++.+.++|+. .+|+++
T Consensus       117 -------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~  177 (452)
T PRK11273        117 -------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL  177 (452)
T ss_pred             -------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence                         0256678889999999999988888889999999998      99999999999999875 455544


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          250 VYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       250 ~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      ..+....+||+.|++.+++.++..++.++..+
T Consensus       178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~  209 (452)
T PRK11273        178 LGMAWFNDWHAALYMPAFAAILVALFAFAMMR  209 (452)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            44444459999999887766555444444333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.89  E-value=8.5e-20  Score=194.48  Aligned_cols=178  Identities=12%  Similarity=0.061  Sum_probs=132.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH-HHHHHHHhhhhHHHhhcccchHHHHH-HHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIA-IFTTI  145 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~~~~G~lsD~~~GR~~~~~-~~~~l  145 (597)
                      ....+..++..++..++...+.+.++.|+.+++|.+.++.++.++.+ ..+..++++++|+ +|| +||||.++ .+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~   91 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLL   91 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHH
Confidence            33566777778899999888899999999999999999999987765 4466666766777 999 79998754 45555


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      ..++..+++++                            .+...+++.+.+.+...+...|....+..|..++++     
T Consensus        92 ~~~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  138 (393)
T PRK15011         92 GVLACTLFAWN----------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG-----  138 (393)
T ss_pred             HHHHHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc-----
Confidence            55666555554                            345555555444444445677888888888776655     


Q ss_pred             hh--hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          226 HL--DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       226 ~R--~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                       |  +...++.+.+.++|..++|.+++++.++.|||+.|++.++..++..++++...|
T Consensus       139 -~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        139 -REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             -chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence             4  344578888999999999999999999999999999887766555554444444

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.5e-21  Score=205.58  Aligned_cols=379  Identities=15%  Similarity=0.059  Sum_probs=234.4

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhH
Q 007580          108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM  187 (597)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  187 (597)
                      +.++++|.++.++|.+++|+++|| +|||..+.++.++..++.++..++...                         +..
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~  116 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF  116 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence            467788999999999999999999 899999999999988888887776331                         467


Q ss_pred             HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH--HhhhccchHHHHHHH
Q 007580          188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV--YIQMEHGWGSAFGAL  265 (597)
Q Consensus       188 ~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~--~i~~~~gw~~~f~i~  265 (597)
                      .+++++|++.|+..|......+.++.|..|.+-      ||..-.+..++..+|..++..++.  .+...-.|++.+.+.
T Consensus       117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~  190 (485)
T KOG0569|consen  117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP  190 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence            899999999999999999999999999999999      999999999999999999966652  234456799998888


Q ss_pred             HHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhcccCccccccccc-cCCCcccccCCcccccCCcchhh
Q 007580          266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE-VPGKHSAIKGSGKIAHTDDFRCL  344 (597)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l  344 (597)
                      .+..++.+++..+                                +||+|++ ++. +++.++|.+..+++...++..-.
T Consensus       191 ~i~~~~~l~~l~~--------------------------------~PESPk~-Ll~~k~~~~~A~~sl~~y~G~~~~~~~  237 (485)
T KOG0569|consen  191 LIPALLQLALLPF--------------------------------LPESPKY-LLIKKGDEEEARKALKFYRGKEDVEAE  237 (485)
T ss_pred             HHHHHHHHHHHhc--------------------------------CCCCcch-HHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence            8776666555433                                2344444 333 34444443333333221111111


Q ss_pred             HH---Hhhhhhccc--CCCCCCccccchhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhccc--------C-
Q 007580          345 DK---AALELKEDV--INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH--------M-  410 (597)
Q Consensus       345 ~~---a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-  410 (597)
                      +.   ...+.....  .....+.++....  .++.....+.+...+.+........++..+....++...        . 
T Consensus       238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~~--lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g  315 (485)
T KOG0569|consen  238 IEEMLREIEEEELEKKKQISLRQLLKNPT--LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIG  315 (485)
T ss_pred             HHHHHHHHHHhccccccCCcHHHHhcCcc--hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            10   111111000  0111121111111  122222222222222222221112222222221111100        0 


Q ss_pred             -----------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHH-HH
Q 007580          411 -----------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIG-IA  478 (597)
Q Consensus       411 -----------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g-~g  478 (597)
                                 ..-++.+++..+.++..++.++.+++.+......... .           . ++.. .+...++.. .-
T Consensus       316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~-~-----------~-~~y~-~i~~~~~~~~~f  381 (485)
T KOG0569|consen  316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG-S-----------W-LSYL-CIAAIFLFIISF  381 (485)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-----------H-HHHH-HHHHHHHHHHhh
Confidence                       1111122223344555555555555544432211110 0           0 1111 122222222 23


Q ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHH
Q 007580          479 EVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVL  558 (597)
Q Consensus       479 ~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l  558 (597)
                      .....|..+-+..|.+|.+.|+.++++..+++++.+++-....+.+.+..|                   .++|.++.+.
T Consensus       382 ~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------------------~~~filF~i~  442 (485)
T KOG0569|consen  382 AIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------------------PYVFILFVIP  442 (485)
T ss_pred             hcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------chhhHHHHHH
Confidence            334568889999999999999999999999999999999999999998887                   4679999999


Q ss_pred             HHHHHHHHHHhhhcccccccCCCCCchh
Q 007580          559 SVINFCAFLYSAYRYKYRSEQKHGNDYE  586 (597)
Q Consensus       559 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~  586 (597)
                      +++.+++.+...||+|+|+.+|+.+..+
T Consensus       443 ~~~~~i~~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  443 LAIFLIYLYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             HHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence            9999999999999999998766544443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.89  E-value=1.3e-22  Score=214.33  Aligned_cols=333  Identities=33%  Similarity=0.454  Sum_probs=220.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhcc
Q 007580          136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ  215 (597)
Q Consensus       136 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~  215 (597)
                      +|+++++.+++++|.+++++++......                   ++.+...++++++++++|.|+.+|++.++++||
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~~-------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq   61 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSLP-------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ   61 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchhh-------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence            5899999999999999988886643221                   114567899999999999999999999999999


Q ss_pred             CCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCccccc-CCCCCchh
Q 007580          216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT  294 (597)
Q Consensus       216 ~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  294 (597)
                      ++++++   ..|.++|+++|++.|+|+.+++.+.++++++.||.++|+++++.+++++++++..++.+++. ++.++++.
T Consensus        62 ~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~  138 (372)
T PF00854_consen   62 YDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT  138 (372)
T ss_dssp             SSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred             hcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence            998742   23999999999999999999999999999999999999999999999999999999999887 67777777


Q ss_pred             h-HHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCc-cccchhhhhh
Q 007580          295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEV  372 (597)
Q Consensus       295 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~  372 (597)
                      + ...++....+++....|....+ ++......+    ....  ........ +........   ..|. .|+.+++++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~--~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~  207 (372)
T PF00854_consen  139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQYS----ERSI--FGIIVFIR-AAVIFFPEI---FFWALFCQVQRVEEL  207 (372)
T ss_dssp             --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHC----CCCC--CCCCCHHH-HHHHHCCCH---HHHTTTSSTTTHHHC
T ss_pred             hhHHHHHHHHHHHhhcccccchHH-HHHhhhhhh----hhhh--hhhhhhcc-chhhhhhhh---hhcccCCccceeeee
Confidence            7 5566666777666555433222 111100000    0000  00001111 111111100   0111 1455677888


Q ss_pred             hHhHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhcccC----------------------------------CCCCCCCh
Q 007580          373 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM----------------------------------GHPRGASQ  418 (597)
Q Consensus       373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~  418 (597)
                      +.+.+.++.+.+.++++..+.+..+....+...+|+.+                                  +++..++.
T Consensus       208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~  287 (372)
T PF00854_consen  208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSP  287 (372)
T ss_dssp             CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred             eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccchh
Confidence            88889999998999999999998888887776664333                                  44556788


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 007580          419 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM  498 (597)
Q Consensus       419 ~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~  498 (597)
                      ..++++|++++.+++++...++.+|.....+++.          .+.+|.++.+++..++|.+..+...+..++.+|++.
T Consensus       288 ~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~~----------~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~  357 (372)
T PF00854_consen  288 PQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCGK----------VSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRA  357 (372)
T ss_dssp             HHHHHHH-HHHHHHHHTTTHHHH---HH----TT------------THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCC----------CChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhh
Confidence            9999999999999999988888877666555542          344788899999999999999988887777777777


Q ss_pred             HHHHHHHHHHHHH
Q 007580          499 KSIGSAYAALAGG  511 (597)
Q Consensus       499 rg~~~gl~~~~~~  511 (597)
                      .+..+|+++....
T Consensus       358 p~~m~~~~~~~~~  370 (372)
T PF00854_consen  358 PSSMMGIWFALSA  370 (372)
T ss_dssp             SSSSTHHHHHHH-
T ss_pred             hHHHHHHHHHHhc
Confidence            7777766665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.89  E-value=6e-20  Score=195.55  Aligned_cols=180  Identities=14%  Similarity=0.107  Sum_probs=148.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      +.+|..+.+.+..++..+..+...+.+ +++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHH
Confidence            355666666666667676655555544 45678899999999999999999999999999999999 8999999999998


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      ..++..++..+                            .+...+++.|++.|++.+...+....+..|.+++++     
T Consensus        83 ~~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----  129 (394)
T PRK11652         83 FILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ-----  129 (394)
T ss_pred             HHHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH-----
Confidence            88888887765                            467788999999999999888888889999998887     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                       |+...+++..+..++..++|.+++++.+..|||+.|++.++..++..++.....+
T Consensus       130 -~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  184 (394)
T PRK11652        130 -LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMP  184 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCC
Confidence             8999999999999999999999999998899999999877665544443333333

>TIGR00895 2A0115 benzoate transport

Probab=99.89  E-value=2.7e-20  Score=197.20  Aligned_cols=181  Identities=16%  Similarity=0.128  Sum_probs=149.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      +.+|+.+...++..+......+.. ....+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~   90 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAM-GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSIL   90 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHH
Confidence            445666666666666666554433 445567778899999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      +..++.+++.++                            .+...+++.|++.|++.+...+...++++|.+|+++    
T Consensus        91 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----  138 (398)
T TIGR00895        91 LFSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF----  138 (398)
T ss_pred             HHHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh----
Confidence            888888777765                            456788899999999999999999999999999988    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                        |++.++++.....+|..++|.+++++.+..||++.|++.++...+..++.+...+
T Consensus       139 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  193 (398)
T TIGR00895       139 --RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLP  193 (398)
T ss_pred             --hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCC
Confidence              9999999999999999999999999999999999999876555444444443333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.89  E-value=1.7e-19  Score=192.13  Aligned_cols=163  Identities=13%  Similarity=0.057  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .++.+++..++..++...+...++. +.++++.+..+.+++.+.+.+...++.+++|+++|| +|||++++++.+++.++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~   81 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLG   81 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHH
Confidence            3455667777777765555444444 467899999999999999999999999999999999 89999999999999888


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      .+.+..+                            .+   .++.|+++|++.+...|...+++.|++|+++      |++
T Consensus        82 ~~~~~~~----------------------------~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~  124 (393)
T PRK11195         82 CLLMLFG----------------------------IH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVK  124 (393)
T ss_pred             HHHHHHH----------------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence            8777654                            23   2678999999999999999999999999998      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~  272 (597)
                      +.++.....++|..+||.++|++.+. .|+..+++.+...+++
T Consensus       125 a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        125 ANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999885 4777777665544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.88  E-value=2.8e-20  Score=204.26  Aligned_cols=168  Identities=14%  Similarity=0.209  Sum_probs=148.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      +.+|+.+..+.+..++..+..+.+.. +.+++.+++|++..+.++..+.+.++..++.+++|+++|| +|||+++.++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITL-VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence            45677777777777777777655544 4567788999999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      +..++.+++.++                            .+...+++.|++.|++.++..+....++.|.+|+++    
T Consensus        94 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  141 (496)
T PRK03893         94 LFSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL----  141 (496)
T ss_pred             HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence            999998888876                            567889999999999999999999999999999998    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~  268 (597)
                        |++.+++++...++|..++|.+.+++.+..+||+.|++.++.
T Consensus       142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence              999999999999999999999999999999999999875443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.88  E-value=1.6e-19  Score=197.14  Aligned_cols=175  Identities=14%  Similarity=0.064  Sum_probs=135.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~  146 (597)
                      +++.+.......++..+..+...+. .+++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPL-LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence            4445555555555655655555443 457788999999999999999999999999999999999 89999999999888


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .++.++++++                            .+...+++.|++.|++.+...+ ....++|++|+++      
T Consensus       112 ~~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------  156 (476)
T PLN00028        112 APAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------  156 (476)
T ss_pred             HHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------
Confidence            8888877765                            4567788899999999887543 4567899999998      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhh----h-----ccchHHHHHHHHHHHHHHHHHHHH
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~----~-----~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      |++++++.+...++|..+++.+.+.+.    +     ..|||+.|++.+++.++..++.++
T Consensus       157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999988777777777766665442    2     258999999988776655544444

>TIGR00898 2A0119 cation transport protein

Probab=99.88  E-value=1.8e-20  Score=206.25  Aligned_cols=145  Identities=12%  Similarity=0.088  Sum_probs=129.2

Q ss_pred             HHHHHhhCCC---hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 007580           94 TFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (597)
Q Consensus        94 ~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~  170 (597)
                      +.+.++++++   ..+.++..+.+.++..++.++.|+++|| +|||++++++.++..++.++++++              
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~--------------  177 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFS--------------  177 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHc--------------
Confidence            3467789998   8899999999999999999999999999 899999999999999988888876              


Q ss_pred             ccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007580          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (597)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~  250 (597)
                                    +++..+++.|++.|++.++..+...+++.|.+|+++      |+...+++..+..+|..++|.++.
T Consensus       178 --------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~  237 (505)
T TIGR00898       178 --------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAY  237 (505)
T ss_pred             --------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          578899999999999999999999999999999999      999999999999999999998887


Q ss_pred             HhhhccchHHHHHHHHHHHHHHHHHH
Q 007580          251 YIQMEHGWGSAFGALAIAMGISNMLF  276 (597)
Q Consensus       251 ~i~~~~gw~~~f~i~~~~~~~~~~~~  276 (597)
                      ++.+   ||+.|++.++..++..+..
T Consensus       238 ~~~~---wr~~~~~~~i~~~~~~~~~  260 (505)
T TIGR00898       238 FIPD---WRWLQLAVSLPTFLFFLLS  260 (505)
T ss_pred             HhhH---HHHHHHHHHHHHHHHHHHH
Confidence            6654   9999998887666555544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.88  E-value=4.1e-19  Score=188.96  Aligned_cols=173  Identities=16%  Similarity=0.096  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (597)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~  152 (597)
                      ...+..+....+.....+. .+.+.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+.+.++.+++.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVG-LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHH
Confidence            3444445555554444444 455678899999999999999999999999999999999 89999999999999988888


Q ss_pred             HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHH
Q 007580          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (597)
Q Consensus       153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~  232 (597)
                      +..+                            .+...+++.|+++|++.+...+...+++.|.+|+++      |++.++
T Consensus        85 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~  130 (392)
T PRK10473         85 CSLA----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLS  130 (392)
T ss_pred             HHHh----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence            8765                            456778889999999999999999999999999998      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       233 ~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      +++...++|..++|.+++++.+..||++.|++.++..++..++.+...+
T Consensus       131 ~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  179 (392)
T PRK10473        131 LLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILK  179 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999888889999999887766655554444443

>TIGR00897 2A0118 polyol permease family

Probab=99.88  E-value=5.3e-19  Score=188.93  Aligned_cols=174  Identities=13%  Similarity=0.067  Sum_probs=142.6

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHH
Q 007580           63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (597)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~  142 (597)
                      .+-+-||.+....+..++..++.+....++++++ +++|.+..+.++..+.+.++..++.++.|+++|| +|||+++..+
T Consensus         7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~   84 (402)
T TIGR00897         7 QKIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIG   84 (402)
T ss_pred             HHcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHH
Confidence            3345566777788888888888777777888887 6789999999999999999999999999999999 8999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch
Q 007580          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (597)
Q Consensus       143 ~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~  222 (597)
                      .++..++.+++.....          +.              .+...+++.|++.|+|.+...+...+.+.+.+|+++  
T Consensus        85 ~~~~~~~~~~~~~~~~----------~~--------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~--  138 (402)
T TIGR00897        85 LLLWCVGHAAFIVFGL----------GH--------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN--  138 (402)
T ss_pred             HHHHHHHHHHHHHHhc----------cC--------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH--
Confidence            9998888765532110          00              356677889999999998888888888899999988  


Q ss_pred             hhhhhhhHHHHHHHHHHHHH-HHHHHHHHHhhhccchHHHHHHHHHH
Q 007580          223 YKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIA  268 (597)
Q Consensus       223 ~~~~R~~~~~~~~~~~~lg~-~l~p~i~~~i~~~~gw~~~f~i~~~~  268 (597)
                          |++++++++...++|. .++|.+++++.+..||+..+|.....
T Consensus       139 ----~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       139 ----LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence                9999999999999996 58999999998888977666654443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.88  E-value=4.2e-19  Score=188.37  Aligned_cols=342  Identities=10%  Similarity=-0.009  Sum_probs=214.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH----HHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI----AIFTTIYL  147 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~----~~~~~l~~  147 (597)
                      +.+.+..++..+++....++++.|+ +++|+|..+.+++.+.+.+...+++++.|+++|| +||+...    .++..++.
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHH
Confidence            3355556666676666678888888 5689999999999999999999999999999999 7985433    22222222


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      +  .++..+                            ++.+.+++.|.+++.+.+...|...++..+.  .++      |
T Consensus        85 ~--~~~~~~----------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~  126 (382)
T TIGR00902        85 A--AFSAGA----------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------F  126 (382)
T ss_pred             H--HHHHhh----------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------c
Confidence            1  122222                            4677888999999999998888888876543  344      7


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhh
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR  307 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (597)
                      ++.++......++|..++|.+++++.+++|||+.|++.++..++..+ .+...++.+++++..+......+......|  
T Consensus       127 ~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--  203 (382)
T TIGR00902       127 GLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIPPKDAIPEDESQGDSAFIALLK--  203 (382)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCCCCccccccccccchhHHHHHc--
Confidence            88899999999999999999999999999999999876654332222 222222111110000000000000000000  


Q ss_pred             hcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhh-hHHHHH
Q 007580          308 HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP-IPACTI  386 (597)
Q Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~  386 (597)
                                                                                     + |.+...+. ..+...
T Consensus       204 ---------------------------------------------------------------~-~~~~~~l~~~~l~~~  219 (382)
T TIGR00902       204 ---------------------------------------------------------------N-PMNLRFLAAVCLIQG  219 (382)
T ss_pred             ---------------------------------------------------------------C-hHHHHHHHHHHHHHH
Confidence                                                                           0 11111110 111111


Q ss_pred             HHHHHHhcchhhHHHHHhhhcccC--------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007580          387 MLNVILTEFLTLSVQQAYTMNTHM--------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY  446 (597)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~  446 (597)
                      .....+...+. +. +..+.+...                    +..++.+..+.+.++.++..+.....+..       
T Consensus       220 ~~~~~~~~~~~-~l-~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------  290 (382)
T TIGR00902       220 AHAAYYGFSAI-YW-QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------  290 (382)
T ss_pred             HHHHHHHHHHH-HH-HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------
Confidence            11111111111 11 101111000                    22334455555666666666665555433       


Q ss_pred             hhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 007580          447 AISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIK  525 (597)
Q Consensus       447 ~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~lg~~l~~~v~  525 (597)
                                      .+.+.++...++.++..++..+....++.+. |++.|++++++++ ...++|..+++.+.|.+.
T Consensus       291 ----------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~  353 (382)
T TIGR00902       291 ----------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY  353 (382)
T ss_pred             ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            3555566667899999999999999999988 9999999999987 577899999999999988


Q ss_pred             hccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHH
Q 007580          526 SVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCA  565 (597)
Q Consensus       526 ~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~  565 (597)
                      +..|                   ...|+..++++++++++
T Consensus       354 ~~~g-------------------~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       354 PTLG-------------------AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             Hhcc-------------------HHHHHHHHHHHHHHHHH
Confidence            7655                   35688888888766544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.87  E-value=3.2e-20  Score=189.21  Aligned_cols=173  Identities=13%  Similarity=0.098  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           73 FIFGNEMAERMAYFGLSVN---MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      -++...++...++|.+.-+   ..+++.++.++|.++.+++.+.+.+++.++-.+.|.++|| .+.|+.+.+++++..+.
T Consensus        29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~  107 (448)
T COG2271          29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIV  107 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHH
Confidence            3444556666777766644   3578889999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      .++++++                            .+...+.+..++.|..+|.-+|.+...++.+|+.+|      ||+
T Consensus       108 nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~  153 (448)
T COG2271         108 NILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGT  153 (448)
T ss_pred             HHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCc
Confidence            9999987                            467788889999999999999999999999999999      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580          230 FFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~--~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~  280 (597)
                      ..++++.+.|+|+++.|++.  +++..+.+||.+|++++++.++..++.+...
T Consensus       154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~  206 (448)
T COG2271         154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL  206 (448)
T ss_pred             eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999  9999999999999999998766555544433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.87  E-value=5.3e-20  Score=202.79  Aligned_cols=390  Identities=13%  Similarity=0.114  Sum_probs=224.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch
Q 007580          106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW  185 (597)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~  185 (597)
                      +.+++.+.+.++..++.++.|+++|+ +|||++++++.+++.+|.++++.+                            +
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a----------------------------~  140 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALA----------------------------P  140 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHh----------------------------h
Confidence            34899999999999999999999998 899999999999999999999998                            6


Q ss_pred             hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-cchHHHHHH
Q 007580          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA  264 (597)
Q Consensus       186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~-~gw~~~f~i  264 (597)
                      +..+++++|++.|+|.|+.....+.+++|..|++.      |+...+.+.+..++|..++..++....+. .+||..+++
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~  214 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL  214 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence            78999999999999999999999999999999999      99999999999999999995444444332 489988888


Q ss_pred             HHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhh
Q 007580          265 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL  344 (597)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  344 (597)
                      ..+..++..+. .+..++.++.-.+........+++ ...+.  .. .++...                      +...+
T Consensus       215 ~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l-~~l~g--~~-~~~~~~----------------------~~~~~  267 (513)
T KOG0254|consen  215 ALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSL-KRLRG--LS-PEDVEV----------------------ELELL  267 (513)
T ss_pred             HHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHH-HHHhC--CC-CcchHH----------------------HHHHH
Confidence            77766555555 444332211100011111111111 11111  00 000000                      00000


Q ss_pred             HHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhccc-C-------------
Q 007580          345 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH-M-------------  410 (597)
Q Consensus       345 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------  410 (597)
                      ................|..+...  ...|+....+.+..++.+......-.++..+.+....+.. .             
T Consensus       268 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~  345 (513)
T KOG0254|consen  268 KIKLLVEAEVAEGKASWGELFSP--KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLG  345 (513)
T ss_pred             HHHHHHhhhcccccccHHHhcCc--chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence            00000000000000011111110  1122222222222222222212112222222221111100 0             


Q ss_pred             -----CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHH
Q 007580          411 -----GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVG  485 (597)
Q Consensus       411 -----~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~  485 (597)
                           -.-++..++..+..|...+.+++++++...........          ......+..++...++.........|.
T Consensus       346 t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~f~~g~g~v  415 (513)
T KOG0254|consen  346 TLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN----------SSKGAGWLAIVFLCLFIFSFAIGWGPV  415 (513)
T ss_pred             HHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC----------cccchhHHHHHHHHHHHHHHhcccccc
Confidence                 00111122233444444455555444433211100000          000023333333334444444555677


Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHH-
Q 007580          486 LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFC-  564 (597)
Q Consensus       486 ~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~-  564 (597)
                      .+.+..+.+|.+.|+.+.++....+++.+++-...........+                  ....|..+++++.+... 
T Consensus       416 ~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~------------------~~~~f~~f~~~~~~~~~~  477 (513)
T KOG0254|consen  416 PWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG------------------IGGTFGYFGGICLLSLII  477 (513)
T ss_pred             hhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------ccchHHHHHHHHHHHHHH
Confidence            78888999999999999999999999999998777666544211                  12356677777777777 


Q ss_pred             HHHHhhhcccccccCCCCCchhh
Q 007580          565 AFLYSAYRYKYRSEQKHGNDYEV  587 (597)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~  587 (597)
                      +++++.+|+|+++.||++..++.
T Consensus       478 fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  478 FVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             HheEEcccCCCCcHHHHHHHHHc
Confidence            88999999999999887665544

>PRK11043 putative transporter; Provisional

Probab=99.87  E-value=1.4e-18  Score=185.45  Aligned_cols=165  Identities=16%  Similarity=0.155  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 007580           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA  157 (597)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~  157 (597)
                      .++..++.....+.+ +.+.+++|.+..+.++..+.+.++..++.+++|+++|| +|||+++.++.++..++..++.++ 
T Consensus        15 ~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~-   91 (401)
T PRK11043         15 SMLGFLATDMYLPAF-KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWV-   91 (401)
T ss_pred             HHHHHHHHHHHHhhH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHh-
Confidence            334444433333333 33678999999999999999999999999999999999 899999999998888888877765 


Q ss_pred             hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007580          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS  237 (597)
Q Consensus       158 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~  237 (597)
                                                 .+...+++.|+++|++.+...+...+++.|.+|+++      |.+.++.....
T Consensus        92 ---------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  138 (401)
T PRK11043         92 ---------------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPL  138 (401)
T ss_pred             ---------------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHH
Confidence                                       467788999999999998888888899999999887      88888888888


Q ss_pred             HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       238 ~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      ..+|..++|.+++++.+..|||+.|++.++..++..++.+.
T Consensus       139 ~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        139 VALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999887766655544433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.87  E-value=2.3e-19  Score=192.86  Aligned_cols=179  Identities=8%  Similarity=-0.134  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      ..+.+.+..++..++++.+.++++.|+++++|++..+.+++.+.+.++..+++++.|+++|| +|||+++.++..+..++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~   89 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVL   89 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHH
Confidence            45666667777888878889999999999999999999999999999999999999999999 89999998876665554


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHH-HHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML-YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                      ...+......                         .... ..+.+.++.++..+.........+.++.+...    ..++
T Consensus        90 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g  140 (420)
T PRK09528         90 FGPFFIYVFA-------------------------PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSG  140 (420)
T ss_pred             HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhcc
Confidence            4322211000                         0000 11112222233223222222222333322111    1156


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  279 (597)
                      ..++......++|..++|.+++++.+ .+|++.|++.++..++..++.+..
T Consensus       141 ~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        141 FEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             ccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcc
Confidence            67777778889999999999999876 489999988777666555554443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.86  E-value=6.6e-19  Score=190.17  Aligned_cols=176  Identities=15%  Similarity=0.108  Sum_probs=133.5

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHH-HHHHHHHH-----HHHHHhhhhHHHhhcccchHH
Q 007580           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSS-NAVNNFLG-----ISQASSVLGGFLADAYLGRYW  137 (597)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~-~~~~~~~~-----~~~~~~~~~G~lsD~~~GR~~  137 (597)
                      +..||+.....++..+++.+....+... .+++.++++.+..+.+ +..+....     ...++.++.|+++|| +|||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~   87 (434)
T PRK15075         10 RESKARAILRVTSGNFLEMFDFFLFGFY-ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRK   87 (434)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHH
Confidence            3446667888888888888887665544 5688889998776654 33333222     223678899999999 89999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 007580          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (597)
Q Consensus       138 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~  217 (597)
                      +++.+.+++.++.++++++.+...+.                    ......++++|+++|++.+...++...+++|++|
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p  147 (434)
T PRK15075         88 GLIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT  147 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC
Confidence            99999999999999998862210000                    0001257899999999999999999999999999


Q ss_pred             CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHH
Q 007580          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAI  267 (597)
Q Consensus       218 ~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~  267 (597)
                      +++      |++.++++....++|..+++.+++.+.        +..|||+.|++.++
T Consensus       148 ~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        148 PGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             ccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            999      999999998888888888888777652        46799999987543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.86  E-value=1.7e-18  Score=184.83  Aligned_cols=189  Identities=9%  Similarity=-0.057  Sum_probs=138.2

Q ss_pred             ccccCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchH
Q 007580           61 DLSKTGGW---IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY  136 (597)
Q Consensus        61 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~  136 (597)
                      -|..+++.   |.+++..+..++.... ....+.+.+++.+ ++|+|.++.+++.+.+.+++.++.++.|++.|| +|.|
T Consensus        23 ~w~~~~~~~a~r~l~~s~~~f~~~F~~-w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R  100 (462)
T PRK15034         23 FWENKGKHIARRNLWISVSCLLLAFCV-WMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGR  100 (462)
T ss_pred             HHhhcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCh
Confidence            56665555   5555555444443333 4444555566655 899999999999999999999999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccC
Q 007580          137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF  216 (597)
Q Consensus       137 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~  216 (597)
                      +++.++.++..+.+++++++...    +.                   +++..+++.|++.|++ ++..+.....++++|
T Consensus       101 ~v~~~~~ll~~i~~~~~~~a~~~----~~-------------------~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf  156 (462)
T PRK15034        101 RWTVFSTAILIIPCVWLGIAVQN----PN-------------------TPFGIFIVIALLCGFA-GANFASSMGNISFFF  156 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcc----cC-------------------CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC
Confidence            99999999998888888865210    00                   3678999999999998 668888999999999


Q ss_pred             CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----hhh-------------ccchHHHHHHHHHHHHHHHHHHHH
Q 007580          217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY-----IQM-------------EHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       217 ~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~-----i~~-------------~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      |+++      |+++++++....++|..+++.+...     +..             ..+|+.++++..+..++..++.++
T Consensus       157 p~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        157 PKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             CHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999      9999999865566666555444432     212             345777777777766665555555


Q ss_pred             hcC
Q 007580          279 GTP  281 (597)
Q Consensus       279 ~~~  281 (597)
                      ..+
T Consensus       231 ~~~  233 (462)
T PRK15034        231 GMN  233 (462)
T ss_pred             hCC
Confidence            443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.9e-20  Score=199.52  Aligned_cols=150  Identities=19%  Similarity=0.226  Sum_probs=138.5

Q ss_pred             hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 007580           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (597)
Q Consensus        99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  178 (597)
                      ++++++.+-+++.+.+..|+.++++.+|+++|| +|-|+++.++.++.++++++..+++.                    
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~--------------------  125 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAAS--------------------  125 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            578899999999999999999999999999999 89999999999999999999999865                    


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-cc
Q 007580          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HG  257 (597)
Q Consensus       179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~-~g  257 (597)
                            .+...+++.|+++|++.|...|+...+.+.+.|+.|      |+++.++.+.+..+|.+++.+++|++.+. .|
T Consensus       126 ------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G  193 (466)
T KOG2532|consen  126 ------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG  193 (466)
T ss_pred             ------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence                  344578999999999999999999999999999999      99999999999999999999999999998 99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          258 WGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       258 w~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      |+++|++.+++.++..++++....
T Consensus       194 W~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  194 WPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999988877777766544

>PRK10133 L-fucose transporter; Provisional

Probab=99.86  E-value=1.6e-18  Score=187.22  Aligned_cols=155  Identities=14%  Similarity=-0.012  Sum_probs=127.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      +....+..+.+..+...+........ .+.+++++|.+..+.++..+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~  100 (438)
T PRK10133         23 SYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFL  100 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            34456666666667777775555554 455699999999999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      +.++.+++..+...                         +++..++++|+++|+|.+...+...++++|..++++     
T Consensus       101 ~~~~~~l~~~~~~a-------------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~-----  150 (438)
T PRK10133        101 YALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS-----  150 (438)
T ss_pred             HHHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh-----
Confidence            99999886432110                         467889999999999999999999999999866665     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~  253 (597)
                       |...++++.....+|..+||.+++.+.
T Consensus       151 -~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        151 -GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             666788888888999999998887654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.86  E-value=2.7e-19  Score=193.43  Aligned_cols=181  Identities=13%  Similarity=0.074  Sum_probs=139.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      |+.++...+...+.......+.. ..+++++ +|++..+.++..+.+.++..++.++.|+++|| +|||+++.++.++..
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFAL-AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHh-hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHH
Confidence            44444444444444444333333 3456665 59999999999999999999999999999999 899999999988888


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++..++......     .                   .+...+++.|++.|++.+...+.....+.|++|+++      |
T Consensus       103 ~~~~~~~~~~~~-----~-------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------r  152 (438)
T TIGR00712       103 AVMLLMGFVPWA-----T-------------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------R  152 (438)
T ss_pred             HHHHHHhccccc-----c-------------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------c
Confidence            887776653110     0                   245677888999999999999989999999999999      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~-~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      ++++++++...++|..++|.+.+.+. .+.+||+.|++.++..++..++.++..+
T Consensus       153 g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       153 GTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999988877644 4578999999988776665544444444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.86  E-value=6.6e-18  Score=184.37  Aligned_cols=340  Identities=14%  Similarity=0.081  Sum_probs=224.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .+..++...++.+++.......++-++. ++.-|+...+++.....+...+..+++|.++|| +.|||+++.+.++..+.
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~   88 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALV   88 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHH
Confidence            3455666667777776555555554444 566788889999999999999999999999999 89999999999887776


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      .+.+++......                       .+.+.+++.-++.|++.+...|+..+++.|+.|+++      ...
T Consensus        89 ~~~L~~l~~~~~-----------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~  139 (524)
T PF05977_consen   89 ALLLAVLAFFGL-----------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPA  139 (524)
T ss_pred             HHHHHHHHHhCc-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHH
Confidence            665555432111                       356778888899999999999999999999999998      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhc
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (597)
                      +.++.....|+.-.+||.++|.+....|-.+.|.+.++..++.++++...++..+.+   ..+..++.+-+...+|    
T Consensus       140 A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~~~e~~~~~l~~G~r----  212 (524)
T PF05977_consen  140 ANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPS---SLPRERFFSALREGLR----  212 (524)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc---ccchhhhhhhHHHHHH----
Confidence            999999999999999999999999888999999998887666554443333221111   1111111111111110    


Q ss_pred             ccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHh-HhhhhhHHHHHHH
Q 007580          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTL-VRLVPIPACTIML  388 (597)
Q Consensus       310 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~  388 (597)
                                              .+.+++                               ..+.+ .+...+.+.   .
T Consensus       213 ------------------------yv~~~~-------------------------------~l~~~l~~~~~~~l~---~  234 (524)
T PF05977_consen  213 ------------------------YVRSSP-------------------------------PLRSVLLRSFLFNLF---A  234 (524)
T ss_pred             ------------------------HHhcch-------------------------------HHHHHHHHHHHHHHh---h
Confidence                                    000000                               00110 000000000   0


Q ss_pred             HHHHhcchhhHHHHHhhhcccC--------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 007580          389 NVILTEFLTLSVQQAYTMNTHM--------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAI  448 (597)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~  448 (597)
                      ...... ...+..+..+.+...                    +.+++.+..+.+..+.++.+++++.+++.         
T Consensus       235 ~a~~aL-lPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~---------  304 (524)
T PF05977_consen  235 SAVWAL-LPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS---------  304 (524)
T ss_pred             hHHHHh-hhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc---------
Confidence            000000 011111000000000                    22233334444555555555555555443         


Q ss_pred             hcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007580          449 SHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT  528 (597)
Q Consensus       449 ~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~  528 (597)
                                    .+.+..++.+++.|++.........+.+...+|+++||+++|++.+....+..+|+++.|.+.+..
T Consensus       305 --------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~  370 (524)
T PF05977_consen  305 --------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF  370 (524)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          355566777888899999999999999999999999999999999999999999999999988766


Q ss_pred             C
Q 007580          529 G  529 (597)
Q Consensus       529 g  529 (597)
                      |
T Consensus       371 g  371 (524)
T PF05977_consen  371 G  371 (524)
T ss_pred             C
Confidence            5

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.85  E-value=3e-18  Score=181.09  Aligned_cols=160  Identities=18%  Similarity=0.211  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580           86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (597)
Q Consensus        86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  165 (597)
                      ....+.++.+. +++|++..+.++..+.+.++..++.+++|+++|| +|||+++.++.++..++..++..+         
T Consensus         8 ~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~---------   76 (377)
T PRK11102          8 DMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALA---------   76 (377)
T ss_pred             HHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHH---------
Confidence            34445655554 6799999999999999999999999999999999 899999999999999998888876         


Q ss_pred             CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (597)
Q Consensus       166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~  245 (597)
                                         .+...+++.|++.|++.+...+...+++.|.+|+++      |++.+++++....+|..++
T Consensus        77 -------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~  131 (377)
T PRK11102         77 -------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLA  131 (377)
T ss_pred             -------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHH
Confidence                               466788899999999999999999999999999998      9999999999999999999


Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       246 p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      |.+++++.+..+|++.|++.++..++..++.....+
T Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (377)
T PRK11102        132 PIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIP  167 (377)
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999899999999887766655544444333

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.85  E-value=1.5e-18  Score=209.48  Aligned_cols=154  Identities=15%  Similarity=0.105  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH--HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA--DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~--~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      .+...++..++..+...+....+..++...++.+..  ..+++.+++.++..++.+++|+++|| +|||++++++.++.+
T Consensus        10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~   88 (1146)
T PRK08633         10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEV   88 (1146)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHH
Confidence            445555666666666555556666677777776543  46788899999999999999999999 899999999988776


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++.+++.++...                         .++..++++|+++|++.+...+...++++|++|+++      |
T Consensus        89 ~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r  137 (1146)
T PRK08633         89 GLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------L  137 (1146)
T ss_pred             HHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------c
Confidence            666655544210                         357889999999999999999999999999999999      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQME  255 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~  255 (597)
                      +++++++..+.++|.++||.+++++.+.
T Consensus       138 ~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        138 SRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998775

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.85  E-value=2.4e-19  Score=188.41  Aligned_cols=155  Identities=13%  Similarity=0.050  Sum_probs=136.0

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 007580           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (597)
Q Consensus        92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~  171 (597)
                      ..+++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.++++++               
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~---------------   80 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFS---------------   80 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHh---------------
Confidence            3467889999999999999999999999999999999999 899999999999999999888876               


Q ss_pred             cccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH-HHHH
Q 007580          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVV  250 (597)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p-~i~~  250 (597)
                                   .+...+++.|++.|++.+...+...++++|++|+++      |++.+++++...++|..++| .+++
T Consensus        81 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~  141 (379)
T TIGR00881        81 -------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLF  141 (379)
T ss_pred             -------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHH
Confidence                         467889999999999999999999999999999998      99999999999999999999 5777


Q ss_pred             HhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          251 YIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       251 ~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      .+.+..+|++.|++.+++.++..++.+...+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (379)
T TIGR00881       142 GIAELYSWHWVFIVPGIIAIIVSLICFLLLR  172 (379)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHheeeC
Confidence            7777889999998887766555444444333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.84  E-value=2.4e-20  Score=191.82  Aligned_cols=183  Identities=17%  Similarity=0.196  Sum_probs=165.1

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (597)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~  143 (597)
                      .+..++.+.++++...++++..|.+... -.-+++.+|++++..+++.+.+.+...++.|+.|+|+|| +.|++++.+|.
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv-~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~  105 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGV-LKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGI  105 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHH
Confidence            3445667888999999999999988764 456788899999999999999999999999999999999 79999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (597)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~  223 (597)
                      +++.++.+.++++                            ..++++++.|.+.|+|.+...|..+++++|.||+..   
T Consensus       106 ~iW~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~---  154 (493)
T KOG1330|consen  106 FIWTLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK---  154 (493)
T ss_pred             HHHHHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh---
Confidence            9999999999987                            578999999999999999999999999999999999   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                         |++.++++|++..+|.++|.++++++.+..+ |||+|.+.+++.++..++.++..++
T Consensus       155 ---Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  155 ---RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             ---hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence               9999999999999999999999999988776 9999999998887766665555544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.84  E-value=3.2e-18  Score=182.47  Aligned_cols=178  Identities=10%  Similarity=-0.101  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .+|......++...+...+.++++.|+++++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.++.+.+...++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence            46677778888888888889999999999999999999999999999999999999999999 89999998877666554


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ...+......+...                    ......+++.+++.|++.+...+....+..|.-+  +      ++.
T Consensus        82 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~  133 (396)
T TIGR00882        82 FAPFFIYVFGPLLQ--------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF  133 (396)
T ss_pred             HHHHHHHHhhhHHH--------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence            43322110000000                    0123345667788888888888888777766422  2      334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      .++......++|..++|.+++.+.+ .+|++.|++.+++.++..++.+
T Consensus       134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence            5566667778999999999998865 5999999988776665544433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.84  E-value=2.4e-18  Score=207.49  Aligned_cols=145  Identities=14%  Similarity=0.043  Sum_probs=111.5

Q ss_pred             HHHhhCCCh-HHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH--HHHHHHHHHHhhhccccCCCCCccccc
Q 007580           96 MFYVMHKSF-ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI--YLAGLTGITLCATMKVFMPNQDNCDRI  172 (597)
Q Consensus        96 l~~~~~~s~-~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l--~~~g~~~~~~~~~~~~~~~~~~~c~~~  172 (597)
                      ++...+.+. ...++..+.+.+...++.+++|+++|| +|||+++.....+  ......+..+..               
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~---------------  105 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHL---------------  105 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence            333344433 346778888999999999999999999 8999976442222  222221222110               


Q ss_pred             ccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007580          173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI  252 (597)
Q Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i  252 (597)
                                  .+++.++++|+++|++.+...|...+++.|++++++      |+.++++...+.++|.++||+++|++
T Consensus       106 ------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l  167 (1140)
T PRK06814        106 ------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLA  167 (1140)
T ss_pred             ------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence                        367889999999999999999999999999999999      99999999999999999999999999


Q ss_pred             hhccchHHHHHHHHHHHHHHHH
Q 007580          253 QMEHGWGSAFGALAIAMGISNM  274 (597)
Q Consensus       253 ~~~~gw~~~f~i~~~~~~~~~~  274 (597)
                      .+..||++.|++.+++.+++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~  189 (1140)
T PRK06814        168 TISGNFVILVALLMGIAVLGWL  189 (1140)
T ss_pred             HhccccHHHHHHHHHHHHHHHH
Confidence            9999999998444444443333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.83  E-value=1.5e-17  Score=176.41  Aligned_cols=155  Identities=8%  Similarity=-0.024  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchH----HHHHHHHHHHHHHHHHH
Q 007580           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGI  153 (597)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~----~~~~~~~~l~~~g~~~~  153 (597)
                      .++..++...+.+.++.|++ ++|.|..+.++.++.+.+...++.+++|+++|| +||+    +.+.+...+.  ....+
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH--HHHHH
Confidence            34445566667788888984 589999999999999999999999999999999 8984    3322222211  11111


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH
Q 007580          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (597)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~  233 (597)
                      ..+                            ++.+.+++.|++.|++.+...|...++..|+  .++      |++.++.
T Consensus        89 ~~~----------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~  132 (382)
T PRK11128         89 FGA----------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGK  132 (382)
T ss_pred             Hhc----------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcch
Confidence            111                            4677888899999999999999888887776  233      6666777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (597)
Q Consensus       234 ~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~  272 (597)
                      .....++|..+||.+++++.+++|||..|++.++..++.
T Consensus       133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~  171 (382)
T PRK11128        133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM  171 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            777778999999999999999999999998777644443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.83  E-value=3.8e-17  Score=179.01  Aligned_cols=181  Identities=12%  Similarity=0.098  Sum_probs=138.1

Q ss_pred             CccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc----
Q 007580           58 PIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL----  133 (597)
Q Consensus        58 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~----  133 (597)
                      |. +|..+++   .+.+++..+...+..+.....++.++. +.|.+..+.+.. +..... .++.+++|+++|| +    
T Consensus         5 ~l-~~~~~~~---~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr-~~~~~   76 (491)
T PRK11010          5 YL-RIFQQPN---SAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDR-YTPPF   76 (491)
T ss_pred             HH-HHHcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHc-ccccC
Confidence            55 5554333   455566666667776667777777765 469998888875 333333 3688999999999 8    


Q ss_pred             -chHHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhh
Q 007580          134 -GRYWT-IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF  211 (597)
Q Consensus       134 -GR~~~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~  211 (597)
                       ||||. +.++.++..++...+++..      |.                   .+...+.+.+++.+++.+...+...++
T Consensus        77 ~Grrr~~ll~~~i~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~  131 (491)
T PRK11010         77 LGRRRGWLLATQLLLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAW  131 (491)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             99986 5566666666766666541      11                   356788888999999999999999999


Q ss_pred             hhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHH
Q 007580          212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       212 ~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~-~~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      ..|++|+++      |+++.++...+..+|..+++.+++++.+ ..|||+.|++.++..++..+..+
T Consensus       132 ~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        132 KTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             HHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999998      9999999999999999999999999988 57999999998876655544433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.82  E-value=9.7e-17  Score=172.29  Aligned_cols=381  Identities=12%  Similarity=0.033  Sum_probs=211.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccch-HHHHHHHHHHHHHHHH
Q 007580           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGLT  151 (597)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-~~~~~~~~~l~~~g~~  151 (597)
                      -+.+..|+....+-...+++++|+++++|++..+.+++.+.+.++..++++++|+++|| +|| |+++.++.++..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHH
Confidence            35566677777766667999999999999999999999999999999999999999999 765 7788888777767666


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhcc--------CCCCCchh
Q 007580          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ--------FDERSKDY  223 (597)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~--------~~~~~~~~  223 (597)
                      ++.+.                            .+...+++.|.+.+++.+...+...+...+.        .....   
T Consensus        85 ~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~---  133 (418)
T TIGR00889        85 FAAQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP---  133 (418)
T ss_pred             HHHHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC---
Confidence            66654                            3566777888888888877777665543222        21112   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCC-CchhhHHHH-HH
Q 007580          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG-SPLTRVAQV-LV  301 (597)
Q Consensus       224 ~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~  301 (597)
                         |.+.++      .+|.+++|.+++.+.....|+ +|++.+++.++..++ .+..++.++.+++. ....+..+. ..
T Consensus       134 ---~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~  202 (418)
T TIGR00889       134 ---PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMSIKVMLGLDAF  202 (418)
T ss_pred             ---Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccCHHHHhhhhHH
Confidence               444444      378888899988884433454 455555554444433 23333321111100 000000000 00


Q ss_pred             HHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhH-------
Q 007580          302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKT-------  374 (597)
Q Consensus       302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  374 (597)
                      ...|++                                .+..+-...+......   .....+.....++...       
T Consensus       203 ~~~k~~--------------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~  247 (418)
T TIGR00889       203 ILFKNK--------------------------------RMAIFFFFSMLLGAPL---QITNIFGNGFLHEFGRNPEFADS  247 (418)
T ss_pred             HHhcCC--------------------------------CeeeHHHHHHHHHhHH---HHHHHhHHHHHHHhcccccccch
Confidence            000000                                0000000000000000   0000000000000000       


Q ss_pred             -hHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCcc
Q 007580          375 -LVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYE  453 (597)
Q Consensus       375 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~  453 (597)
                       ...................+.     ..+       +..++++.++.+.++.++.++++.+.....             
T Consensus       248 ~~~~~~g~~~~~~~i~~i~~~~-----~~g-------~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~-------------  302 (418)
T TIGR00889       248 FVVKNASIWMSLSQFSEIFFIL-----TIP-------FFLKRFGIKKVMLLSLVAWALRFGFFAYGD-------------  302 (418)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHH-----HHH-------HHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-------------
Confidence             000000000000000000000     000       111223334445555555544443333210             


Q ss_pred             ccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccCCCC
Q 007580          454 FSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPK  532 (597)
Q Consensus       454 ~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~lg~~l~~~v~~~~g~~~  532 (597)
                           ... .+...++...++.++++++..+....++.+.+|++.|++++|+.+ ...++|..+|+.+.+.+.+..|  .
T Consensus       303 -----~~~-~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g--~  374 (418)
T TIGR00889       303 -----PEY-FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF--A  374 (418)
T ss_pred             -----cch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--c
Confidence                 000 123334556678888888888999999999999999999999997 6788999999999998887654  1


Q ss_pred             CCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580          533 KGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  574 (597)
Q Consensus       533 ~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~  574 (597)
                      ....+          |+..|.+.+++.++..+.++++.++.+
T Consensus       375 ~~~~~----------~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       375 YGTFD----------WQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             ccCCc----------hHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            11012          477888888888888888888877543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.81  E-value=7.5e-18  Score=177.09  Aligned_cols=166  Identities=16%  Similarity=0.081  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~  150 (597)
                      .+..++..++.....+...+.++.++++++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHH
Confidence            4455566666666767777777768999999999999999999999999999999999999 899999999999999999


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ++++++                            . +...+++.|+++|++.+. .+...++++|++|+++      |++
T Consensus        82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~  126 (366)
T TIGR00886        82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT  126 (366)
T ss_pred             HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence            888876                            4 677889999999999664 4567889999999998      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh----------ccchHHHHHH-HHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA-LAIAMGIS  272 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~----------~~gw~~~f~i-~~~~~~~~  272 (597)
                      ..+++....++|..+++.+++.+..          +.+|||.|++ .++...+.
T Consensus       127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  180 (366)
T TIGR00886       127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLP  180 (366)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHH
Confidence            9999987778888888777766554          3489999944 34443333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.81  E-value=2.1e-16  Score=169.25  Aligned_cols=173  Identities=12%  Similarity=0.036  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .++.+....++..+. +++...+.+.+++++|.+..+.+++.+.+.++..++.++.|++.|| +|||+++.++.+++.++
T Consensus         4 ~~~~~~~~f~~~G~~-~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g   81 (410)
T TIGR00885         4 PFALITSLFALWGFA-NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALG   81 (410)
T ss_pred             HHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHH
Confidence            455566666666666 3555555677799999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ..++..+...                         .++..+++.|++.|+|.|...+...+++.+..|+++      |++
T Consensus        82 ~~l~~~~~~~-------------------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~  130 (410)
T TIGR00885        82 AFLFWPAAEI-------------------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATR  130 (410)
T ss_pred             HHHHHHHHhh-------------------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHH
Confidence            8876544210                         367889999999999999999999999999999888      888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh--------------------------ccchHHHHHHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML  275 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~--------------------------~~gw~~~f~i~~~~~~~~~~~  275 (597)
                      ..++.+...++|..++|.+++.+..                          ..+||++|.+.+++.++..++
T Consensus       131 ~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       131 RLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987742                          246999998877755544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.80  E-value=3.2e-17  Score=176.91  Aligned_cols=176  Identities=15%  Similarity=0.127  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHH-HHHHHHHHHHHHHHHHH
Q 007580           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT  154 (597)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~-~~~~~~~l~~~g~~~~~  154 (597)
                      +...+....+..+++.|+++++|+++.+++++.+...+..++..|+.|+++||.   +|||| .++++.++..++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            344555566677889999999999999999999999999999999999999973   68755 56677777777777776


Q ss_pred             HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC-CCCchhhhhhhhHHHH
Q 007580          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLDRFFNF  233 (597)
Q Consensus       155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~-~~~~~~~~~R~~~~~~  233 (597)
                      ......                      .......+++.+++.+++.+.......++.+|..+ +++      |++..++
T Consensus        89 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~  140 (437)
T TIGR00792        89 TTPDFS----------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTF  140 (437)
T ss_pred             hCCCCC----------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHH
Confidence            541100                      00235566777788888888888888888899875 455      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-------hccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          234 FYLSVTVGAIVAFTLVVYIQ-------MEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       234 ~~~~~~lg~~l~p~i~~~i~-------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      .....++|..+++.+.+.+.       +..+|++.+.+.+++..+..++.+...++
T Consensus       141 ~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e  196 (437)
T TIGR00792       141 RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKE  196 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence            88888888877776665544       24689999988887766665554444443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00896 CynX cyanate transporter

Probab=99.80  E-value=4.1e-17  Score=171.20  Aligned_cols=144  Identities=16%  Similarity=0.120  Sum_probs=122.7

Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007580           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (597)
Q Consensus        90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c  169 (597)
                      ..+.+.+.+++|++.++.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+.+ .+             
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~-------------   84 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SA-------------   84 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence            334566788999999999999999999999999999999999 899999999988887777665 33             


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (597)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~  249 (597)
                                     .+...+++.|++.|+|.+...+..+..+.|.++ ++      |++.+++++...++|..+++.++
T Consensus        85 ---------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~  142 (355)
T TIGR00896        85 ---------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAAT  142 (355)
T ss_pred             ---------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHH
Confidence                           356778899999999999988888888889886 56      99999999999999999999999


Q ss_pred             HHhhhcc--chHHHHHHHHHHHH
Q 007580          250 VYIQMEH--GWGSAFGALAIAMG  270 (597)
Q Consensus       250 ~~i~~~~--gw~~~f~i~~~~~~  270 (597)
                      +.+.+..  +||+.|.+.++..+
T Consensus       143 ~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896       143 VPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHH
Confidence            9887764  39998877665443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.80  E-value=7.7e-17  Score=170.31  Aligned_cols=165  Identities=18%  Similarity=0.223  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhC--CChHHHHHHHH--HHH---HHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 007580           81 ERMAYFGLSVNMVTFMFYVMH--KSFADSSNAVN--NFL---GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (597)
Q Consensus        81 ~~~~~~~~~~~l~~yl~~~~~--~s~~~a~~~~~--~~~---~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~  153 (597)
                      +.+..+.+. ....++.++..  .++++.+...+  .+.   ++..++.++.|+++|| +|||+++.++.++..++..++
T Consensus         5 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         5 EWFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             hHHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHH
Confidence            334433333 34555666544  33444443333  233   3334688999999999 899999999999999999888


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH
Q 007580          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (597)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~  233 (597)
                      +++......                    .......+++.|+++|++.+...+...++++|.+|+++      |+...++
T Consensus        83 ~~~~~~~~~--------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~  136 (394)
T TIGR00883        83 GLLPSYATI--------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSF  136 (394)
T ss_pred             hhCCChhhh--------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHH
Confidence            876321000                    00112357889999999999999999999999999998      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHHHHH
Q 007580          234 FYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISN  273 (597)
Q Consensus       234 ~~~~~~lg~~l~p~i~~~i~--------~~~gw~~~f~i~~~~~~~~~  273 (597)
                      .+.+..+|..+++.++..+.        +..+||+.|.+.++..+++.
T Consensus       137 ~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       137 QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            99999999999998877654        35689999987766554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.79  E-value=5.2e-18  Score=187.58  Aligned_cols=140  Identities=15%  Similarity=0.120  Sum_probs=128.2

Q ss_pred             HhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccC
Q 007580           98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG  177 (597)
Q Consensus        98 ~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~  177 (597)
                      +..+.+.....+..+.+.++..+|+++.|++||| +|||++++++.++.+++.++.+++                     
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a---------------------  168 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA---------------------  168 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            5566778888899999999999999999999999 899999999999999999999887                     


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580          178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (597)
Q Consensus       178 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g  257 (597)
                             +++..+++.|++.|++.++...+...+++|+++++.      |+...++ ......++.++|.+++++..  +
T Consensus       169 -------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~  232 (521)
T KOG0255|consen  169 -------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--D  232 (521)
T ss_pred             -------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--h
Confidence                   688999999999999999999999999999999999      9999999 88888899999999999987  8


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 007580          258 WGSAFGALAIAMGISNML  275 (597)
Q Consensus       258 w~~~f~i~~~~~~~~~~~  275 (597)
                      |||.+++..+..++.++.
T Consensus       233 Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  233 WRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988776665555

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.79  E-value=1.2e-16  Score=163.60  Aligned_cols=372  Identities=15%  Similarity=0.093  Sum_probs=244.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      +..+|.++.-.+. +...+....+.+.+.+++.+++|+|+.|.++++....+...+..++-|++.|| ||-|++..++.+
T Consensus        10 ~~~~~~L~~S~~a-f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~   87 (417)
T COG2223          10 RIARRNLWLSTLA-FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSML   87 (417)
T ss_pred             cchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHH
Confidence            4455555544443 33344446677788899999999999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      +..+-....+++.+.                         ++.+.+++.+.+.|++.+ ......+.++.+||+++    
T Consensus        88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~----  137 (417)
T COG2223          88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK----  137 (417)
T ss_pred             HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcccc-eehcccccccccCChhh----
Confidence            999988888888542                         344688888899998755 46778888999999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc---hHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHH
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV  301 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g---w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (597)
                        .|.+.+++. ..|+|..+...++..+....|   |+....+..+.+++..+.+++..++.+..++..++... .+. .
T Consensus       138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~-~~~-~  212 (417)
T COG2223         138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP-AQL-K  212 (417)
T ss_pred             --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-hHH-H
Confidence              999999999 899999999999999888888   99999998888888888777777655443332222111 000 0


Q ss_pred             HHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhh
Q 007580          302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI  381 (597)
Q Consensus       302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  381 (597)
                      .                                                                  +...+....+..+
T Consensus       213 ~------------------------------------------------------------------v~~~~~~W~lsll  226 (417)
T COG2223         213 A------------------------------------------------------------------VFSNKDTWLLSLL  226 (417)
T ss_pred             H------------------------------------------------------------------HhcCcchHHHHHH
Confidence            0                                                                  0000111111111


Q ss_pred             HHHHHHHHHHH-hcchhhHHHHHhhh------------------cccC--CCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007580          382 PACTIMLNVIL-TEFLTLSVQQAYTM------------------NTHM--GHPRGASQLQRVGIGLAVSILSVIWAGIFE  440 (597)
Q Consensus       382 ~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~--~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~  440 (597)
                      ...+.-.++.+ .+.+.++..+ ...                  -+.+  ...+|....+.+.+....++++...+....
T Consensus       227 Y~~tFG~Fvgfs~~l~~~~~~~-fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~  305 (417)
T COG2223         227 YFATFGGFVGFSAYLPMYLVTQ-FGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL  305 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence            11111111111 1111111111 011                  1111  455666666666666666666666555431


Q ss_pred             HHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007580          441 RYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASIL  520 (597)
Q Consensus       441 ~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l  520 (597)
                      ...     .++      .+.. ......+..+++.|+|++-+    ..++..+.|+ +-|.+.|+....+++|++.-|..
T Consensus       306 ~~~-----~~~------~~~~-~~~~~~l~l~~~~G~GnGsv----fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~  368 (417)
T COG2223         306 TGF-----GHG------GSFV-VFVAVFLALFVFAGLGNGSV----FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLA  368 (417)
T ss_pred             ccc-----ccC------cchH-HHHHHHHHHHHHhccCcchh----eeechHHHHh-hhhHHHHHHHHhccccccchhHH
Confidence            100     000      0000 11122333444455554443    3334444444 57899999999999999999999


Q ss_pred             HHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580          521 NSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  574 (597)
Q Consensus       521 ~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~  574 (597)
                      .+...+.+|                 .+...|+++..+.+++.+..+....|.+
T Consensus       369 ~g~~~~~tg-----------------~~~~~f~~~~~~~~~a~v~~~~~y~r~~  405 (417)
T COG2223         369 FGVSLDLTG-----------------SYTGAFMLLLAFYLVALVLTWALYARRR  405 (417)
T ss_pred             HHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999888876                 3567899999999999888888766643

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.78  E-value=1.5e-15  Score=162.31  Aligned_cols=166  Identities=13%  Similarity=0.092  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc-----chHH-HHHHHHHHHH
Q 007580           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-----GRYW-TIAIFTTIYL  147 (597)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-----GR~~-~~~~~~~l~~  147 (597)
                      ++...+.+.+.+.-....+|.|+++ .|+|.++.+++......  .+..+++|+++|| +     |||| .+.++.++..
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~   79 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLA   79 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHH
Confidence            3444566666666667778888875 59999999988665554  6888999999999 7     8876 6777777777


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      +++..+.+...      .                   .+...+++..++.+++.+...+...+++.|++|+++      |
T Consensus        80 l~~~~l~~~~~------~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r  128 (402)
T PRK11902         80 ASIAAMAFCPP------H-------------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------R  128 (402)
T ss_pred             HHHHHHHhcCc------c-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------h
Confidence            77776665411      0                   345666767677888889999999999999999999      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHH
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNM  274 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~-~gw~~~f~i~~~~~~~~~~  274 (597)
                      +++.++...+..+|..+++.+++++.+. .|||..|++.++..++..+
T Consensus       129 ~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        129 GAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL  176 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998885 5999999988876655444

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.77  E-value=4.8e-16  Score=163.31  Aligned_cols=159  Identities=12%  Similarity=0.032  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH-HHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~  148 (597)
                      ..+++++..|+..+=  ...+.+.+|+.+++|++.++ .+.+.+.|..++.++.+++|+++|| +|-|+++.++.+.+.+
T Consensus        28 ~~~~lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl  104 (511)
T TIGR00806        28 LVLYLCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVC  104 (511)
T ss_pred             HHHHHHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence            444455555554332  22355677999999999999 9999999999999999999999999 8999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                      ..++++++                            .+...+.+.|++.|++.|+.. +...+++.++|+++      |+
T Consensus       105 ~t~L~~fa----------------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~  149 (511)
T TIGR00806       105 VWLLLLLG----------------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQ  149 (511)
T ss_pred             HHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HH
Confidence            99999987                            467899999999999999999 99999999999999      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHH
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  267 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~  267 (597)
                      ++.+++..+..+|.++++++++++ ..+|||+-+.+..+
T Consensus       150 ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~I  187 (511)
T TIGR00806       150 RAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNII  187 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHH
Confidence            999999999999999999999994 46799986655444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.77  E-value=6.5e-16  Score=168.48  Aligned_cols=152  Identities=15%  Similarity=0.131  Sum_probs=127.5

Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007580           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (597)
Q Consensus        90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c  169 (597)
                      .....++.+++|-+ ....|+.+.+.++..+..++.|.|||. ||||..++++.++.++|.++++.+             
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA-------------  128 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATA-------------  128 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcC-------------
Confidence            45567899999876 467788899999999999999999997 999999999999999999999976             


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (597)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~  249 (597)
                                     +++..++++..+.|+|.|... +....++|..|.+.      |..+..+......+....+|.++
T Consensus       129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia  186 (599)
T PF06609_consen  129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA  186 (599)
T ss_pred             ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence                           678899999999999977665 45666899999988      98888777766666666788888


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          250 VYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       250 ~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      ..+..+.+|||.|++.++...+++++.++
T Consensus       187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  187 QLFAAHSGWRWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             HHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence            77777789999999998877766654443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.76  E-value=3.2e-15  Score=160.79  Aligned_cols=197  Identities=12%  Similarity=0.060  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhh----cccchHHHHHHH-HHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTIAIF-TTI  145 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD----~~~GR~~~~~~~-~~l  145 (597)
                      ++.+....+-..+++....+++++|+ +++|.+...++++.....+...+.+++.|++||    | +||||.++++ .+.
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr-~GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSR-FGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCC-CCChHHHHHHHHHH
Confidence            45555555666777666667777765 679999999999999999999999999999999    6 7999998875 555


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      ..+++.+++.+.....+..+          . ............++++..+..++....++...++++|.+|+++.+   
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~---  149 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR---  149 (477)
T ss_pred             HHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH---
Confidence            55566666654321100000          0 000000011234455555666788888889999999999988711   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHh--hhcc-------------chHHHHHHHHHHHHHHHHHHHHhcCccc
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYI--QMEH-------------GWGSAFGALAIAMGISNMLFFIGTPLYR  284 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i--~~~~-------------gw~~~f~i~~~~~~~~~~~~~~~~~~~~  284 (597)
                       ++.+.++.....++|..+|+.++++.  .+..             +.++.|++.+++.+++.++..+..++.+
T Consensus       150 -~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       150 -TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence             35788999999999999999999875  2211             5688999988877777777666665543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.76  E-value=1.3e-22  Score=220.06  Aligned_cols=379  Identities=15%  Similarity=0.102  Sum_probs=226.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch
Q 007580          106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW  185 (597)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~  185 (597)
                      ..++..+.+.++..+|.+++|+++|| +|||++++++.++..++.++.+++...                         .
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------------~  100 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSY-------------------------N  100 (451)
T ss_pred             HHHHHHHHHHhhhccccccccccccc-ccccccccccccccccccccccccccc-------------------------c
Confidence            45788899999999999999999999 899999999999999999999987210                         1


Q ss_pred             hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh---ccchHHHH
Q 007580          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF  262 (597)
Q Consensus       186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~---~~gw~~~f  262 (597)
                      +...++++|++.|++.|+..+....++.|..|++.      |+...++......+|..++..++-.+.+   ..+||+.+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~  174 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL  174 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence            67889999999999999999999999999999999      9999999999999998888877654433   24599988


Q ss_pred             HHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcch
Q 007580          263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFR  342 (597)
Q Consensus       263 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  342 (597)
                      ++.++..++..+...                                ..||+|+| ++.+++.+++.+..+++.+.+...
T Consensus       175 ~~~~~~~l~~~~~~~--------------------------------~~pESP~w-L~~~~~~~~A~~~l~~~~~~~~~~  221 (451)
T PF00083_consen  175 IFGAIPSLLVLLLRF--------------------------------FLPESPRW-LLSKGRDEEAEKVLRKLRGKEIED  221 (451)
T ss_pred             ccccccccccccccc--------------------------------ccccccce-eccccccccccccccccccccccc
Confidence            877765543322221                                13566666 666666666655555532211100


Q ss_pred             hhHHHhhhhhcccC--CCCCCccccchhhhhhhHhHhhhhhHHHHHHHH-HHHhcchhhHHHHHhhhccc-C--------
Q 007580          343 CLDKAALELKEDVI--NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN-VILTEFLTLSVQQAYTMNTH-M--------  410 (597)
Q Consensus       343 ~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~--------  410 (597)
                       .+....+...+..  ....|+.+..... .++.+...+.+........ .......+.+... ...+.. .        
T Consensus       222 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~  298 (451)
T PF00083_consen  222 -EEIEEIKAEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNSFLATLILGLV  298 (451)
T ss_pred             -ccccccccccccccccceeeeecccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence             0000000000000  0011221111100 1122222222221111111 1111111111111 111111 0        


Q ss_pred             ---------CCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHH
Q 007580          411 ---------GHPRGASQLQRVGIGLAVSILSVIWAG-IFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEV  480 (597)
Q Consensus       411 ---------~~~~~~~~~~~i~~G~~l~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~  480 (597)
                               ...++.+++..+..+.++++++...++ .......             .+.. .+...++...+.......
T Consensus       299 ~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~i~~~~l~~~~~~~  364 (451)
T PF00083_consen  299 NFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVS-------------SSSW-WSILSIVFLALFFAFFSL  364 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-------------cccc-cccccceeeeeccccccc
Confidence                     122222233334455555544444443 1100000             0000 122222222222222233


Q ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHH
Q 007580          481 FCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSV  560 (597)
Q Consensus       481 ~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~  560 (597)
                      ...+..+.+..|.+|.+.|+.+.|+....+++++++++.+.+.+....+                  ....|++.+++++
T Consensus       365 g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~------------------~~~~~~i~~~~~~  426 (451)
T PF00083_consen  365 GWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG------------------GWGVFLIFAGVCL  426 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc------------------ccccchhhHHHHH
Confidence            4557777888999999999999999999999999999988776554321                  0245778888999


Q ss_pred             HHHHHHHHhhhcccccccCCCCCc
Q 007580          561 INFCAFLYSAYRYKYRSEQKHGND  584 (597)
Q Consensus       561 l~~~~~~~~~~~~~~~~~~~~~~~  584 (597)
                      +..++.+++.+|+|+|+.||.+++
T Consensus       427 i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  427 IAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             HHHhheeEEEeeCCCCCHHHHHhh
Confidence            999999999999999999887664

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00901 2A0125 AmpG-related permease

Probab=99.76  E-value=8.2e-16  Score=161.34  Aligned_cols=161  Identities=13%  Similarity=0.101  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc----cchHHHH-HHHHHHHHHHHHHHHHhhhcccc
Q 007580           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF  162 (597)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~----~GR~~~~-~~~~~l~~~g~~~~~~~~~~~~~  162 (597)
                      +.....+.+.+++|+|.++.++.... .+...+ .+++|+++||+    +||||.+ +.+.++..+....+++...    
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~----   79 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP----   79 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence            33444556677899999999988644 334443 88999999994    3999975 5666666666555554311    


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007580          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (597)
Q Consensus       163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~  242 (597)
                                           ..+...+....++.+++.+...+...++++|++|+++      |+.+.++...+.++|.
T Consensus        80 ---------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~  132 (356)
T TIGR00901        80 ---------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM  132 (356)
T ss_pred             ---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence                                 0344556666677888888889999999999999988      9999999999999999


Q ss_pred             HHHHHHHHHhhhccc--------hHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          243 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       243 ~l~p~i~~~i~~~~g--------w~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      .+++.+++++....|        ||+.|++.++..++..++.++..+
T Consensus       133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~  179 (356)
T TIGR00901       133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAK  179 (356)
T ss_pred             HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999988888        999999888876665544443333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.74  E-value=4.5e-15  Score=151.07  Aligned_cols=173  Identities=16%  Similarity=0.075  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .+..+....|...+. +.....+.+.+++.++++..+++++...+..++.++.+..|++.+| +|+|+.++.+..++++|
T Consensus        14 ~~v~~t~lFfl~G~~-~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg   91 (422)
T COG0738          14 AFVLLTSLFFLWGFI-TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVG   91 (422)
T ss_pred             HHHHHHHHHHHHHHH-hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHH
Confidence            444444444555555 5566778899999999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ..+..-++..                         ..+.+++++.++.|.|.+...+...++++.+.++++      -..
T Consensus        92 ~~lF~pAa~~-------------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~  140 (422)
T COG0738          92 AALFWPAASS-------------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAF  140 (422)
T ss_pred             HHHHhhhhhh-------------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHH
Confidence            9988755331                         567899999999999999999999999999999987      566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc-------------------cchHHHHHHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQME-------------------HGWGSAFGALAIAMGISNML  275 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~-------------------~gw~~~f~i~~~~~~~~~~~  275 (597)
                      -+++....+.+|+.++|.+++++..+                   -.|+++|.+.+....+..+.
T Consensus       141 rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~  205 (422)
T COG0738         141 RLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVL  205 (422)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            67788888899999999999987662                   23677776655544443333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.71  E-value=9.3e-15  Score=159.02  Aligned_cols=400  Identities=14%  Similarity=0.099  Sum_probs=239.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~  148 (597)
                      |.+.+..|+.++..+++..   .+...+.++++.+..+.+|+.++......+..++.+.+.|| ||.|.+.+.+.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHH
Confidence            4444444555554444432   34567888999999999999999999999999999999999 8999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHH-HHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      |+++..++                            .+++.+++.. ++.|+|.|........+++.+|..+       |
T Consensus       124 g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R  168 (509)
T KOG2504|consen  124 GLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------R  168 (509)
T ss_pred             HHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------H
Confidence            99999988                            4566666554 4679999999999999998777654       8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhh
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR  307 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (597)
                      +.+.++-..+..+|..+-|.+..++.+..|||+.+++.+.+.+-.++.....++.....++.     ...     ..+..
T Consensus       169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-----~~~-----~~~~~  238 (509)
T KOG2504|consen  169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-----EEK-----DLRNS  238 (509)
T ss_pred             HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-----hhh-----hhccc
Confidence            99999999999999999999999999999999999998887765555555555533222221     000     00000


Q ss_pred             hcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCC--c--cccchhhhhhhHhHhhhhhHH
Q 007580          308 HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPW--K--LCTVTQVEEVKTLVRLVPIPA  383 (597)
Q Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~l~~~~  383 (597)
                      ....+.....  .+   ..   ...+...+.+ ...................+-  .  .+......+ +..+.+   ..
T Consensus       239 ~~~~~~~~~~--~~---~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~-~~fl~~---~~  305 (509)
T KOG2504|consen  239 AASVESTPKP--VE---LR---ISERDSGLKK-LSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD-PKFLLL---AL  305 (509)
T ss_pred             cccccccccc--cc---cc---cccCCCCCCc-ccccchhhhhhCCccccccchhhhhhhhhHHHHcC-chHHHH---HH
Confidence            0000000000  00   00   0000000000 000000000000000000000  0  000011111 111111   01


Q ss_pred             HHHHHHHHHhcchhhHHHHH--hhhcccC----------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007580          384 CTIMLNVILTEFLTLSVQQA--YTMNTHM----------------------GHPRGASQLQRVGIGLAVSILSVIWAGIF  439 (597)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~  439 (597)
                      ...+....+.....++...+  ...+...                      .....+.......++++..+++.++....
T Consensus       306 ~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~  385 (509)
T KOG2504|consen  306 SNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA  385 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            11111111111111111111  1111111                      11111223333455555555555444443


Q ss_pred             HHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 007580          440 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI  519 (597)
Q Consensus       440 ~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~  519 (597)
                                             .+.+.++..-+++|+..+...........+..+.+.-+.+.|+..++++++..+|+.
T Consensus       386 -----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpP  442 (509)
T KOG2504|consen  386 -----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPP  442 (509)
T ss_pred             -----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcc
Confidence                                   355556666678888888888887788999999999999999999999999999999


Q ss_pred             HHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 007580          520 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA  570 (597)
Q Consensus       520 l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~  570 (597)
                      +.+.+.+.++                 +|+..|.+.+++.+++.+++++..
T Consensus       443 iag~~~d~tg-----------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  443 IAGLLYDITG-----------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             cceeeeeccC-----------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            9998777766                 357778888888888877666654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.71  E-value=6e-14  Score=140.88  Aligned_cols=173  Identities=18%  Similarity=0.146  Sum_probs=149.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      |..+..+.++.+--+-...++.+ +..-+.+++|+|.+.++.+++.-.+...+..++..+|+.| +|..+.+..+.++.+
T Consensus        11 ~~li~gIvlia~NLR~~itsvgP-LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~   88 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGP-LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIA   88 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhh-hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHH
Confidence            55666666777777777666654 4578899999999999999999999999999999999999 899999999999988


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      +|.++=...                             +...++.+-.+.|+|.+......++++-+.||++.       
T Consensus        89 ~G~~iR~~~-----------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------  132 (395)
T COG2807          89 AGILIRSLG-----------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------  132 (395)
T ss_pred             HHHHHHhcc-----------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------
Confidence            888776653                             34678888899999999999999999999999875       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      +..+++|....++|+++++.+...+.++. |||....+.+...++++++++.
T Consensus       133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP  184 (395)
T COG2807         133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP  184 (395)
T ss_pred             hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence            88999999999999999999999998877 7999999988888777776654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.70  E-value=1.5e-16  Score=162.62  Aligned_cols=180  Identities=22%  Similarity=0.222  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc-chHH-HHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYW-TIAIFTTIYL  147 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GR~~-~~~~~~~l~~  147 (597)
                      .+|++++..++..+..|++..|.|+|+.++.|+|..++++..+.|..+...+++++||+|||+| |||. +-++++++.+
T Consensus       253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~  332 (448)
T COG2271         253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT  332 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999988 7664 4455555555


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      +..+....+       |+                   .|..+..+..+.+|+..-+++..+.....|..|.+.      -
T Consensus       333 ~~~~~~w~~-------~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------a  380 (448)
T COG2271         333 ASLVLYWLA-------PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------A  380 (448)
T ss_pred             HHHHHHHcC-------CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------c
Confidence            566655554       21                   356788888899999999999899999999999988      7


Q ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          228 DRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       228 ~~~~~~~~~~~~l-g~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      |++.++..++..+ |+.++....+++.|.+||...|.+..+..+++.+++....+
T Consensus       381 GtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         381 GTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             cchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            7788887777777 99999999999999999999999888877777666555444

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=2.9e-15  Score=151.41  Aligned_cols=151  Identities=13%  Similarity=0.065  Sum_probs=137.2

Q ss_pred             hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 007580           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (597)
Q Consensus        99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  178 (597)
                      .++-++++.|++...+.+...+..++.|.+.|| +|+|-.++++.++....++++++.                      
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg----------------------  156 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFG----------------------  156 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence            355677889999999999999999999999999 899999999999999999999987                      


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (597)
Q Consensus       179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw  258 (597)
                            .++.+++++|.++|+|.+....+..++++|.||+++.     |++.+|+.-.+..+|-.+||.++|.+.+..|.
T Consensus       157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk  225 (464)
T KOG3764|consen  157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK  225 (464)
T ss_pred             ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence                  5678999999999999999999999999999998863     89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580          259 GSAFGALAIAMGISNMLFFIGTPLY  283 (597)
Q Consensus       259 ~~~f~i~~~~~~~~~~~~~~~~~~~  283 (597)
                      +.+|.+.++++++-.++-++..+..
T Consensus       226 ~aPFlVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  226 SAPFLVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             cCcHHHHHHHHHHHHHHHHheeCcc
Confidence            9999999998888776666655543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.69  E-value=3.1e-16  Score=160.91  Aligned_cols=139  Identities=17%  Similarity=0.159  Sum_probs=105.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCC
Q 007580          102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP  181 (597)
Q Consensus       102 ~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  181 (597)
                      .++...+.+..+-.++..+|+++.||++|+ +|||+++...+++.+++++.++++.                     |..
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~---------------------~~~  138 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSV---------------------GTT  138 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCC---------------------CCC
Confidence            556677788888899999999999999998 8999999999999999999777652                     222


Q ss_pred             ccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH----HHHHHHHHHHHhhhc--
Q 007580          182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV----GAIVAFTLVVYIQME--  255 (597)
Q Consensus       182 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~l----g~~l~p~i~~~i~~~--  255 (597)
                      +...-+.++...|+++|+|.|+=+|+..++.+|....+.      |+...+.......+    |+.++-++.+-+...  
T Consensus       139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~  212 (538)
T KOG0252|consen  139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN  212 (538)
T ss_pred             CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence            222456788999999999999999999999999998888      88887775444444    444443333322111  


Q ss_pred             ---------cchHHHHHHHHHH
Q 007580          256 ---------HGWGSAFGALAIA  268 (597)
Q Consensus       256 ---------~gw~~~f~i~~~~  268 (597)
                               .=||..|.+.++.
T Consensus       213 ~~~~~~~ld~vWRl~~glg~vp  234 (538)
T KOG0252|consen  213 GPSTYPHLDGVWRIIFGLGAVP  234 (538)
T ss_pred             CCCCchHHHHHHHHHHHHHHHH
Confidence                     2399888766553

>PRK09848 glucuronide transporter; Provisional

Probab=99.69  E-value=4.6e-14  Score=153.05  Aligned_cols=156  Identities=11%  Similarity=0.038  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHHHH-HHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTTIY  146 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~~-~~~~~l~  146 (597)
                      .+.-.+..+..++.+..+.++++.|+++.+|++..+++.+.....+..++..++.|+++||.   +||||.+ .++.+..
T Consensus        10 ~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~   89 (448)
T PRK09848         10 IVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL   89 (448)
T ss_pred             HHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH
Confidence            33344455666777667778888999999999999999999999999999999999999992   3777755 4555544


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .+...++.....  ...+                   ......+++...+.+++.+...+...++..++..+.++     
T Consensus        90 ~~~~~~~~~~~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----  143 (448)
T PRK09848         90 MIFSVLVFWVPT--DWSH-------------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----  143 (448)
T ss_pred             HHHHHHHHhCcC--CCCc-------------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----
Confidence            443333321100  0000                   01233445555677888888888888877777665332     


Q ss_pred             hhhHHHHHHHH-----HHHHHHHHHHHHHHh
Q 007580          227 LDRFFNFFYLS-----VTVGAIVAFTLVVYI  252 (597)
Q Consensus       227 R~~~~~~~~~~-----~~lg~~l~p~i~~~i  252 (597)
                      |.+..++..++     .+++..++|.+.+..
T Consensus       144 r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        144 RARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            66666554432     345666667666543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.69  E-value=1.7e-13  Score=145.74  Aligned_cols=177  Identities=12%  Similarity=-0.012  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHH--HHHHHHHHHHHhhhh-HHHhhcccchHHHHHHHHHHH-
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQASSVLG-GFLADAYLGRYWTIAIFTTIY-  146 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~--~~~~~~~~~~~~~~~-G~lsD~~~GR~~~~~~~~~l~-  146 (597)
                      ...+....+.+.+.+....+.+|.|++ +.|.+.++.+..  .........+..++. ++++|| +||||.+++...+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence            455666778888887777788888875 569999999986  345556665555555 678998 89999976665332 


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .+....+....  +    .                  ......++...++.++..+...+...++..|..++++      
T Consensus        81 ~~~~~~~~~~~--~----~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------  130 (390)
T TIGR02718        81 SACLASLALVG--P----D------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------  130 (390)
T ss_pred             HHHHHHHHcCC--c----c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence            21222222110  0    0                  0112233444455667777777778888888887777      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  279 (597)
                      ++...+....+..+|..+|+.+.+++.++.|||..|++.++..++..+..+..
T Consensus       131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            78888888888899999999999999999999999999887766555544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.68  E-value=1e-14  Score=163.78  Aligned_cols=208  Identities=15%  Similarity=0.112  Sum_probs=157.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      ..+++.+.+.+...++......++.....+.+.+++++++.+.+++.+.+.++..++.++.|+++|| +|||+.+.++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~l  106 (633)
T TIGR00805        28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCA  106 (633)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHH
Confidence            3556656555554555555556777777888999999999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHhhhccc-cC-------------CCCCcccccc-------cccCCCCCcc--chhHHHHHHHHHHHHHhh
Q 007580          145 IYLAGLTGITLCATMKV-FM-------------PNQDNCDRIS-------QLLGSCEPAK--SWQMLYLYTVLYITGFGA  201 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~-~~-------------~~~~~c~~~~-------~~~~~~~~~~--~~~~~~l~~~~~l~g~g~  201 (597)
                      ++.+|.++++++..+.. ..             .+.+.|..++       ++...|....  ...+.+++++|+++|+|.
T Consensus       107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~  186 (633)
T TIGR00805       107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA  186 (633)
T ss_pred             HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence            99999999988642110 00             0112342100       0011233322  124567889999999999


Q ss_pred             hchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc----------------------chH
Q 007580          202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GWG  259 (597)
Q Consensus       202 g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~----------------------gw~  259 (597)
                      +...+...+++.|.+|+++      |+..+++++....+|+++|+++++++.+.+                      +|+
T Consensus       187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw  260 (633)
T TIGR00805       187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW  260 (633)
T ss_pred             CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence            9999999999999999999      999999999999999999999999987542                      277


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 007580          260 SAFGALAIAMGISNMLFFIG  279 (597)
Q Consensus       260 ~~f~i~~~~~~~~~~~~~~~  279 (597)
                      .+|++.+++.++..+.+++.
T Consensus       261 l~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       261 IGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhC
Confidence            78888777666555444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.68  E-value=1.3e-14  Score=145.96  Aligned_cols=116  Identities=15%  Similarity=0.067  Sum_probs=104.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCc
Q 007580          103 SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA  182 (597)
Q Consensus       103 s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  182 (597)
                      +..-+|.+-+.|.+...+.++++|.+||+ +|||+++.+|.+..++...+.+.+                          
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S--------------------------  118 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALS--------------------------  118 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence            44567888899999999999999999999 799999999999999888888876                          


Q ss_pred             cchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580          183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (597)
Q Consensus       183 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~  254 (597)
                        .|+..++++|++.|+.-|-. ..+.++++|.+++++      |+.+++....+..+|..+||+++||+.+
T Consensus       119 --~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  119 --RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             --HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence              67877888899999988765 567889999999999      9999999999999999999999999987

>TIGR00788 fbt folate/biopterin transporter

Probab=99.67  E-value=2.2e-14  Score=156.06  Aligned_cols=173  Identities=9%  Similarity=-0.014  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccc-----hHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTT  144 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G-----R~~~~~~~~~  144 (597)
                      ...++....+.+.+. +.+...+.+++.+++|++.++.+...+...+...+-++ +|+++|| ++     ||+.++++.+
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHHHHH
Confidence            344555577888888 77788888999999999999999899988888888766 9999999 67     7777777766


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      +.. ......++..     +                    .......+.+++.+++.+....+..++..|..+ ++++. 
T Consensus       104 l~~-~~~~~~l~~~-----~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~-  155 (468)
T TIGR00788       104 LGS-AILYGLLPGK-----V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA-  155 (468)
T ss_pred             HHH-HHHHHhcccc-----c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc-
Confidence            542 1222222210     0                    123334447888999999999999999999999 44221 


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~  275 (597)
                        ++...++.+...++|..+|+.++|++.+..+|+..|++.+...++..+.
T Consensus       156 --~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~  204 (468)
T TIGR00788       156 --GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV  204 (468)
T ss_pred             --CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence              4445666667778999999999999999999999999888776665433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.67  E-value=1.6e-14  Score=144.12  Aligned_cols=146  Identities=13%  Similarity=0.017  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580           86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (597)
Q Consensus        86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  165 (597)
                      ......+.+-+....|.+..+..++......+..++...+|.++|+ +|||+.+.+..+...+.-++-..+         
T Consensus        94 ~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~s---------  163 (528)
T KOG0253|consen   94 MMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGAS---------  163 (528)
T ss_pred             HHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCC---------
Confidence            3344444555677788888899999999999999999999999999 899999888877665555444443         


Q ss_pred             CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (597)
Q Consensus       166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~  245 (597)
                                         +|+..+++.|.+.|+|.|+ .|...++-.|..|...      |..-.-.. ....+|.++.
T Consensus       164 -------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~e  216 (528)
T KOG0253|consen  164 -------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFE  216 (528)
T ss_pred             -------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHH
Confidence                               6888999999999999999 8999999999999888      77776665 6677888888


Q ss_pred             HHHHHHhhhccchHHHHHHHHHH
Q 007580          246 FTLVVYIQMEHGWGSAFGALAIA  268 (597)
Q Consensus       246 p~i~~~i~~~~gw~~~f~i~~~~  268 (597)
                      ..+.=.+..++||||-.......
T Consensus       217 a~law~vm~~~gwr~~l~~~~~p  239 (528)
T KOG0253|consen  217 ALLAWGVMSNFGWRYLLFTSSTP  239 (528)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhH
Confidence            87776677788999977665543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.67  E-value=6.6e-14  Score=152.90  Aligned_cols=178  Identities=10%  Similarity=-0.006  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhh----cccch-HHHHHHHHHHHHHHH
Q 007580           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGR-YWTIAIFTTIYLAGL  150 (597)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD----~~~GR-~~~~~~~~~l~~~g~  150 (597)
                      +..+..++....+..+++.|+++.+|++...++.+.....+.-++..|+.|+++|    | ||| |+.++++.+...++.
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHH
Confidence            3445556666777888999999999999999999999999999999999999999    5 698 455556776666666


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC-CCCchhhhhhhh
Q 007580          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLDR  229 (597)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~-~~~~~~~~~R~~  229 (597)
                      .++...   +.. +                  .......+++...+.+++.........++.+|+.+ +++      |.+
T Consensus        92 ~llf~~---p~~-~------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~  143 (473)
T PRK10429         92 FLLFSA---HLF-E------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQ  143 (473)
T ss_pred             HHHHcC---CCC-C------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHH
Confidence            555432   100 0                  00234445555566788888888889999999984 555      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh-------ccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      ..++-....++|+.+.+.+...+.+       ..+|++...+.+++.++..++.+...++
T Consensus       144 l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e  203 (473)
T PRK10429        144 LVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHE  203 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcee
Confidence            8888666677776665555443321       2356766666666555544444444443

>PRK09669 putative symporter YagG; Provisional

Probab=99.66  E-value=9.9e-14  Score=150.31  Aligned_cols=178  Identities=11%  Similarity=0.078  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHHH-HHHHHHHHHHHHH
Q 007580           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWT-IAIFTTIYLAGLT  151 (597)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~-~~~~~~l~~~g~~  151 (597)
                      +..+..++....+..+++.|+++++|++...++.+.....+.-++..|+.|+++||.   +||||. ++.+.+...+..+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            333455555566778899999999999999999999999999999999999999983   577544 5566666666655


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC-CCchhhhhhhhH
Q 007580          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRF  230 (597)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~R~~~  230 (597)
                      ++...   |....                   ......+++...+.+.+.........++.+|+.++ ++      |.+.
T Consensus        96 l~f~~---p~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------R~~l  147 (444)
T PRK09669         96 LTFYT---PDFGA-------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------RHSL  147 (444)
T ss_pred             HHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------HHHH
Confidence            44332   10000                   13445566666667777777777888999998854 44      8888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-------ccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          231 FNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       231 ~~~~~~~~~lg~~l~p~i~~~i~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      .++.....++|..+++.+...+..       ..||+..+.+.+++.++..++.+...+
T Consensus       148 ~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~  205 (444)
T PRK09669        148 QSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTK  205 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeE
Confidence            888887888887777665443322       346887777777665555444444333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.63  E-value=1.3e-12  Score=138.62  Aligned_cols=117  Identities=12%  Similarity=0.044  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 007580           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (597)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~  153 (597)
                      +....|+..+.+-...+++++|+++ .|+|..+.|.+.+...+...+.+++.|+++||+..+||.+.+..++..+.....
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4555566666666677888999976 679999999999999999999999999999994346777777666555544333


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (597)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (597)
                      ...                            .+...+++..++..+......|...++.-+...++
T Consensus        86 ~~~----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~  123 (400)
T PF03825_consen   86 AFS----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDR  123 (400)
T ss_pred             HHh----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc
Confidence            332                            34556666677778888888888888887776543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.62  E-value=1.8e-13  Score=143.28  Aligned_cols=369  Identities=11%  Similarity=0.028  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH-
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA-  148 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~-  148 (597)
                      ..+...+..|+..+.+....++.+.+++++.|++.++.|.+.+...+...+.+|+.|.++|| +|.||-++....+..+ 
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHH
Confidence            56666777777777777788999999999999999999999999999999999999999999 8966655444332222 


Q ss_pred             -HHHHH-HHhhhccccCCCCCcccccccccCCCCCccchhH-HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          149 -GLTGI-TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       149 -g~~~~-~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                       +-... ...   |.++                     .|. ...+++-...+++..+..|...++..+..-..      
T Consensus        87 ~~pff~~v~~---pll~---------------------~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~------  136 (412)
T PF01306_consen   87 FGPFFIYVFG---PLLQ---------------------SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRN------  136 (412)
T ss_dssp             CHHHHHHTHH---HHHH---------------------TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHH---HHHH---------------------HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHh------
Confidence             22221 111   1111                     111 11122212233444444455555543322111      


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHH
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR  305 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (597)
                        +.=+|-......+|.+++..++|++.+ .+-...||+.....++..++.+..++...++.+..+...           
T Consensus       137 --~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~-----------  202 (412)
T PF01306_consen  137 --GFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG-----------  202 (412)
T ss_dssp             --SS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS-----------
T ss_pred             --cCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc-----------
Confidence              111222344566888899999998876 466778887665544444443333322111100000000           


Q ss_pred             hhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHH
Q 007580          306 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACT  385 (597)
Q Consensus       306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  385 (597)
                                                    ..++..+.-|.                    .++-..|..+.++.+....
T Consensus       203 ------------------------------~~~~~~~~~~~--------------------~~l~k~~~fw~~~l~v~g~  232 (412)
T PF01306_consen  203 ------------------------------AKKDKVSLKDV--------------------LSLFKMRNFWFFVLFVIGV  232 (412)
T ss_dssp             ------------------------------S------HHHH--------------------HHHTTSHHHHHHHHHHHHH
T ss_pred             ------------------------------cCCCCCcHHHH--------------------HHHhcchhHHHHHHHHHHH
Confidence                                          00000000000                    0001112333333333333


Q ss_pred             HHHHHHH-hcchhhHHHHHh--hhcccC--------------------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007580          386 IMLNVIL-TEFLTLSVQQAY--TMNTHM--------------------GHPRGASQLQRVGIGLAVSILSVIWAGIFERY  442 (597)
Q Consensus       386 ~~~~~~~-~~~~~~~~~~~~--~~~~~~--------------------~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~  442 (597)
                      ...+..+ +|.+.++..+-.  ......                    +.-+|.+.+..+.++.+++.+=....++    
T Consensus       233 ~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~----  308 (412)
T PF01306_consen  233 AAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF----  308 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh----
Confidence            3333333 443333322100  000000                    1111111221122221111111111111    


Q ss_pred             HhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH-HHHHHHHHHHHHHHH
Q 007580          443 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCFAASILN  521 (597)
Q Consensus       443 ~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~lg~~lg~~l~  521 (597)
                                        . .+++++++.-.+.++-..+......-++.+.+|++..++.-.+. ++..++|..+.+.+.
T Consensus       309 ------------------~-~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~  369 (412)
T PF01306_consen  309 ------------------A-TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLA  369 (412)
T ss_dssp             ---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             ------------------h-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence                              1 45667777778888888888999999999999999998888885 789999999999999


Q ss_pred             HHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580          522 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  574 (597)
Q Consensus       522 ~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~  574 (597)
                      |.+.+..|                  ++..|++++++.++..++-++..++.+
T Consensus       370 G~lyd~~G------------------~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  370 GYLYDRIG------------------FQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HhhHhhcC------------------cHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            99888766                  567899999988877777777655543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.61  E-value=8.5e-14  Score=150.08  Aligned_cols=178  Identities=14%  Similarity=0.070  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhh----cccchHHHHH-HHHHHHHHHHHHH
Q 007580           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTIA-IFTTIYLAGLTGI  153 (597)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD----~~~GR~~~~~-~~~~l~~~g~~~~  153 (597)
                      +...+..+....++..|+++.+|+++..++.+.....+..++..|+.|.++|    | +||||.++ ++.++..++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence            4445555556678899999999999999999999999999999999999999    7 89776665 5667777777666


Q ss_pred             HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH
Q 007580          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (597)
Q Consensus       154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~  233 (597)
                      ....      |.              +.........+++..++..++.........++.+|+.++.++     |.+..++
T Consensus        90 f~~~------p~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~  144 (428)
T PF13347_consen   90 FSPP------PA--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSW  144 (428)
T ss_pred             hccc------cc--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHH
Confidence            6430      00              000002334456666677899999999999999999985432     8888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh----c---cchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          234 FYLSVTVGAIVAFTLVVYIQM----E---HGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       234 ~~~~~~lg~~l~p~i~~~i~~----~---~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      -.....+|..+...+.+.+.+    .   .+|++..++.+++.++..++.....|+
T Consensus       145 ~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  145 RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            777777777655555554432    1   169999888888777777666666655

>PTZ00207 hypothetical protein; Provisional

Probab=99.61  E-value=6.7e-12  Score=138.06  Aligned_cols=183  Identities=9%  Similarity=-0.012  Sum_probs=136.6

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHH
Q 007580           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (597)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~  143 (597)
                      ..++|..+...+....+.... |++... ...+.+++|++..+.+++.+... ...++.++.|+++|| +|||+++.++.
T Consensus        23 e~~Rw~~lva~~~~~~~~g~~-y~fsv~-s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~   98 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICTSFM-YAFNLI-SGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSM   98 (591)
T ss_pred             ccchHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence            356776665555555555444 555443 45789999999999998877643 334566778999999 89999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (597)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~  223 (597)
                      +++.+|.++++++....  ..                    .+.+.+++.|++.|+|.+...+.....+.++|| ++   
T Consensus        99 ll~~iG~ll~ala~~~~--i~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~---  152 (591)
T PTZ00207         99 TVFCLGTLLFALTFQEV--IE--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN---  152 (591)
T ss_pred             HHHHHHHHHHHHHhccc--cc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh---
Confidence            99999999999863210  00                    367889999999999999998888999999997 56   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHH-HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          224 KTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       224 ~~~R~~~~~~~~~~~~lg~~l-~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                         |+...++......+|+++ +++..+++.  .+|++.|++.+++.++..++++...+
T Consensus       153 ---RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        153 ---RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence               999999999999999975 555555554  35787788777766555544444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.59  E-value=7.9e-13  Score=142.71  Aligned_cols=152  Identities=12%  Similarity=0.047  Sum_probs=127.3

Q ss_pred             HHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 007580           96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL  175 (597)
Q Consensus        96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~  175 (597)
                      +.++.++...+.+.+.++|.++++++.+++|.|.|| +.-.+.+..+.+.+.+..++....                   
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~-------------------  131 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAV-------------------  131 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            346777888899999999999999999999999999 786666666666555544444433                   


Q ss_pred             cCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--
Q 007580          176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--  253 (597)
Q Consensus       176 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~--  253 (597)
                               .|.+.+++.|++.|+.+++.+|+...+++.+|.+++      |+.-+++++....+|.++|.++...+.  
T Consensus       132 ---------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~  196 (495)
T KOG2533|consen  132 ---------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKL  196 (495)
T ss_pred             ---------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence                     578899999999999999999999999999999999      999999999999999999999998863  


Q ss_pred             ----hccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          254 ----MEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       254 ----~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                          ...||||.|.+.+++.++..++.++..|.
T Consensus       197 ~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  197 NGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             cCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence                34689999999998877666665555543

>PRK11462 putative transporter; Provisional

Probab=99.57  E-value=8.7e-12  Score=135.60  Aligned_cols=180  Identities=11%  Similarity=0.063  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhc---ccchHHHHH-HHHHHHHHHHH
Q 007580           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA---YLGRYWTIA-IFTTIYLAGLT  151 (597)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~---~~GR~~~~~-~~~~l~~~g~~  151 (597)
                      +..+..++.+..+..++..|+++.+|+++..++.+....-+.-++.-|+.|+++||   .+||||..+ ++.+...++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            34444556656667788999999999999999999999999999999999999997   279876665 56566776666


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (597)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~  231 (597)
                      ++...   |...                   .......+++.-.+..++.........++.+|+.++.++     |.+..
T Consensus        96 llf~~---p~~s-------------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~  148 (460)
T PRK11462         96 LAYST---PDLS-------------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQ  148 (460)
T ss_pred             HHHhC---CCCC-------------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHH
Confidence            65533   1000                   002234455555667888888888889999999875332     99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc-------cchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          232 NFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       232 ~~~~~~~~lg~~l~p~i~~~i~~~-------~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      ++...+.++|..+++.+...+...       .||+....+.+++.+++.++.+...++
T Consensus       149 s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE  206 (460)
T PRK11462        149 SWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE  206 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence            999888888888877766544332       357776666666555555444444443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.53  E-value=5.3e-13  Score=146.49  Aligned_cols=179  Identities=12%  Similarity=0.030  Sum_probs=132.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~  146 (597)
                      +|+.....+...++..+.+|++..++|.|+++.+|++..++........++..++.+++|+++|| +|||+++.++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence            45555555555566778889999999999999999998888888888888899999999999999 89999988887654


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .++...+.....     .                    .+...+++++++.+++.+...+....++.+.+|++.      
T Consensus       327 ~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------  375 (490)
T PRK10642        327 FVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------  375 (490)
T ss_pred             HHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------
Confidence            443333221110     0                    234567788888888877777778888899999999      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHH
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      |++++++.+....+++.++|.+.+++.+.. +|+.++++..+..+++++..+
T Consensus       376 Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~  427 (490)
T PRK10642        376 RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV  427 (490)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            999999854445666788999999988765 477776655554444444433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.51  E-value=6.9e-13  Score=144.69  Aligned_cols=175  Identities=16%  Similarity=0.078  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .+|.+.+..++....++++..++|.|+++++|++..++++....+.++..++.+++|+++|| +|||+.+.+...+..++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHH
Confidence            56777777888888888888999999999999999999999999999999999999999999 89998776655444433


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ..++.+...                          .+....++.+++.|++..+..........|.+|++.      |++
T Consensus       338 ~~~~~~~~~--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~  385 (467)
T PRK09556        338 FTLGVYQHA--------------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGV  385 (467)
T ss_pred             HHHHHHHhc--------------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHH
Confidence            322222210                          234455566777776554444444466779999998      999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHhhh------------ccchHHHHHHHHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       230 ~~~~~~~~~~l-g~~l~p~i~~~i~~------------~~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      +.++.+...++ |..++|.+.|++.+            ..||+..|++..+..+++.++.+
T Consensus       386 a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        386 ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            99999988886 77999999999999            57899999888776666655444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.48  E-value=4.6e-12  Score=135.01  Aligned_cols=163  Identities=11%  Similarity=0.093  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhh
Q 007580           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (597)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~  158 (597)
                      ++....++.+..+++.|+++++|++..+++...+...+...++.+++|+++|| +|||+.+..+.+...+....+...  
T Consensus       226 ~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~--  302 (393)
T PRK15011        226 TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMA--  302 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHH--
Confidence            33344445566788999999999999999988887777888899999999999 899998877765554443333322  


Q ss_pred             ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 007580          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (597)
Q Consensus       159 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~  238 (597)
                                                .+...+++.+++.+++.+...+.......|.+|+ +      |++.+++++...
T Consensus       303 --------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~~  349 (393)
T PRK15011        303 --------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNTS  349 (393)
T ss_pred             --------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHHH
Confidence                                      2445566777777777777777777788888874 5      788999988889


Q ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       239 ~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      ++|..++|.++|++.+..||++.|++.++..++++++.+
T Consensus       350 ~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        350 RVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887776666555544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.48  E-value=2.2e-10  Score=124.15  Aligned_cols=91  Identities=19%  Similarity=0.189  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcc
Q 007580          468 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGR  547 (597)
Q Consensus       468 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~  547 (597)
                      +.+.-++.|+..+...+..-++..++.|+++.+...|++.+.....+++||++++.+.+.+|                 +
T Consensus       383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-----------------~  445 (477)
T PF11700_consen  383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-----------------S  445 (477)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------C
Confidence            33444578888889999999999999999999999999999999999999999999998887                 1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580          548 FDYLYWLLAVLSVINFCAFLYSAYRYKYR  576 (597)
Q Consensus       548 ~~~~f~~~a~l~~l~~~~~~~~~~~~~~~  576 (597)
                      ..+-+..+.++.++++++++.. +..|++
T Consensus       446 ~r~g~~~l~~lf~~gl~ll~~v-~~~~g~  473 (477)
T PF11700_consen  446 QRYGFLFLLVLFLIGLILLFFV-DVEKGR  473 (477)
T ss_pred             chhHHHHHHHHHHHHHHHHhhc-cchhhh
Confidence            2455777788888887776443 433443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.44  E-value=5e-12  Score=143.08  Aligned_cols=131  Identities=9%  Similarity=0.023  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHH
Q 007580          111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL  190 (597)
Q Consensus       111 ~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l  190 (597)
                      ..+..++..++.+++|+++|| +|||++++++.++.+++.+++++.                            .+...+
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~~l  651 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFG----------------------------NSESAM  651 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHHHH
Confidence            445567889999999999999 899999999998888888777765                            234456


Q ss_pred             HHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Q 007580          191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (597)
Q Consensus       191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~  270 (597)
                      ++.+++.+++.++..+...++++|++|++.      |++++++.+....+|+++||.+++++.+. +...+|++.+++.+
T Consensus       652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll  724 (742)
T TIGR01299       652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA  724 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence            677778888888888999999999999999      99999999999999999999999988764 45667777766665


Q ss_pred             HHHHHHH
Q 007580          271 ISNMLFF  277 (597)
Q Consensus       271 ~~~~~~~  277 (597)
                      ++.++.+
T Consensus       725 l~~ll~~  731 (742)
T TIGR01299       725 CGGLLAL  731 (742)
T ss_pred             HHHHHHH
Confidence            5554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.44  E-value=6.4e-10  Score=114.82  Aligned_cols=376  Identities=14%  Similarity=0.083  Sum_probs=203.2

Q ss_pred             HHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccc-----hHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007580           96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYW-TIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (597)
Q Consensus        96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G-----R~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c  169 (597)
                      +..|++++....+..+....+.. ...+..|..||+ .+     ||- -+..+.+++..+..+...+.......-     
T Consensus         6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~-----   78 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESG-----   78 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHH-HHHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccc-----
Confidence            45678888888887777766554 468899999998 46     554 445667777777777666543221100     


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (597)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~  249 (597)
                             .....+.-.......++..+.|+|.+...++..++++|..|+++      |++..++.+....+|..++..+.
T Consensus        79 -------~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~  145 (403)
T PF03209_consen   79 -------QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF  145 (403)
T ss_pred             -------cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence                   00011111222344456667899999999999999999999999      99999999999999999999999


Q ss_pred             HHhhhccchHHHHHH----HHHHHHHHHHHHHHhcC-cccccC-CCCCchhhHHHHHHHHHHhhhcccCccccccccccC
Q 007580          250 VYIQMEHGWGSAFGA----LAIAMGISNMLFFIGTP-LYRHRL-PGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVP  323 (597)
Q Consensus       250 ~~i~~~~gw~~~f~i----~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  323 (597)
                      +.+.+.++..-..-+    ..+...+.++. .+..+ +.++.. ...++...+.+.....+.++...     +       
T Consensus       146 g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia-~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~-----~-------  212 (403)
T PF03209_consen  146 GRLLDPFSPERLIQVIQGVALIALLLNLIA-LWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQAR-----R-------  212 (403)
T ss_pred             HHHccccCHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCcccccCCCCCCccHHHHHHHHHhCCChh-----H-------
Confidence            988877653222222    12222222222 22211 111111 11122222221111111110000     0       


Q ss_pred             CCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCcc--ccchhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHH
Q 007580          324 GKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKL--CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ  401 (597)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  401 (597)
                                      .+.++-....-...++.-..|+--  +.. .+.|   ..++-.+|.......+..         
T Consensus       213 ----------------f~~fl~l~t~a~~~QD~iLEPygg~Vfgm-sv~e---TT~Lta~~~~G~L~G~~~---------  263 (403)
T PF03209_consen  213 ----------------FFVFLFLGTLAFFMQDVILEPYGGEVFGM-SVGE---TTRLTAFWGGGTLLGMLL---------  263 (403)
T ss_pred             ----------------HHHHHHHHHHHHHhhHHHcCCchhHHcCC-CHHH---HHHHHHHHHHHHHHHHHH---------
Confidence                            000111100000000000122210  000 0011   111111121111111111         


Q ss_pred             HHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHH
Q 007580          402 QAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF  481 (597)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~  481 (597)
                      .+....      ++....+...+|.+...+++.........                    .+.+.+.+..+++|++.++
T Consensus       264 ~g~~l~------~~~~~~~~a~~G~~~~~~~f~lii~a~~~--------------------~~~~~~~~~~~l~G~g~G~  317 (403)
T PF03209_consen  264 AGFLLS------RRLGKKRTAALGCLLGALAFALIILAGPL--------------------GSPWLFRPGVFLLGLGNGL  317 (403)
T ss_pred             HHHHhc------CCCCchHHHHHHHHHHHHHHHHHHHHHhc--------------------ccchHHHHHHHHHHHhhhH
Confidence            001111      12222333345555555555544333111                    3456677888999999999


Q ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHH
Q 007580          482 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVI  561 (597)
Q Consensus       482 ~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l  561 (597)
                      ......+...++++++..|..+|.+...+.++..++..+.+.+.+...        ++..+-....|..+|.+=+++.++
T Consensus       318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~--------~~~~~~~~~aY~~VF~lEa~ll~~  389 (403)
T PF03209_consen  318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR--------ALFGNSPALAYGVVFALEAVLLLA  389 (403)
T ss_pred             HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhccCCcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998766432        111110112356667666666665


Q ss_pred             HHHHHH
Q 007580          562 NFCAFL  567 (597)
Q Consensus       562 ~~~~~~  567 (597)
                      ++.+..
T Consensus       390 a~~ll~  395 (403)
T PF03209_consen  390 ALVLLG  395 (403)
T ss_pred             HHHHHH
Confidence            555433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK03699 putative transporter; Provisional

Probab=99.43  E-value=7.1e-12  Score=133.57  Aligned_cols=173  Identities=14%  Similarity=0.144  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .++.+.+..++...+.+++..++|.|+++++|++..+++...+.+.++..++.+++|+++|| +|||+++.....+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHH
Confidence            44555566666677778888999999999999999999999999999999999999999999 89999988777665555


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ..+....                            .+...+.+..++.|++.++..+...+...+..|.+       +++
T Consensus       285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~  329 (394)
T PRK03699        285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK  329 (394)
T ss_pred             HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence            4444332                            23344555667788888888888888888877643       455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      ..++......+|..++|.+.|++.+..||+..|++.++..+++.++...
T Consensus       330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            6777777889999999999999999999999998877766655444333

>PRK09952 shikimate transporter; Provisional

Probab=99.42  E-value=1.8e-11  Score=132.39  Aligned_cols=182  Identities=12%  Similarity=-0.002  Sum_probs=132.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      ++++.........++..+.+|.+..+++.|+++.+|++......+.........++.+++|+++|| +|||+++..+.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~  325 (438)
T PRK09952        247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALI  325 (438)
T ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHH
Confidence            344444444555667777888899999999999999988766555556666778888999999999 8999998888765


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      ..++...+.....     ..                   .....+++..++.+++.+...+...++++|.+|.+.     
T Consensus       326 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~-----  376 (438)
T PRK09952        326 GTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY-----  376 (438)
T ss_pred             HHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-----
Confidence            5544433332210     00                   123334445566688888888888999999999988     


Q ss_pred             hhhhHHHH-HHHHHHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHHHHHH
Q 007580          226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       226 ~R~~~~~~-~~~~~~lg~~l~p~i~~~i~~~~--gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                       |+++.++ +..+..+|+.++|.+.+++.+..  +|+..+...++..+++.+..+.
T Consensus       377 -r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        377 -RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             -hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence             9999988 55556689999999999998743  4888887776666666555444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.41  E-value=1.5e-11  Score=131.13  Aligned_cols=166  Identities=14%  Similarity=0.075  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhh
Q 007580           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (597)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~  158 (597)
                      ++..++++.+..+++.|+.+ .|.+  ..+.....+.++..++.++.|+++|| +|||+.+.++.++..++..+....  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~--  299 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLA--  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHh--
Confidence            34455556666778888764 4653  44566677888888999999999999 899999988888777777666654  


Q ss_pred             ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 007580          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (597)
Q Consensus       159 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~  238 (597)
                                                .+...+++.+++.|++.+...+.......|.+|+++      |++.+++++...
T Consensus       300 --------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~  347 (399)
T PRK05122        300 --------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFL  347 (399)
T ss_pred             --------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence                                      344566778889999999888888888889999888      999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       239 ~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      ++|..++|.+.|++.+..||++.|++.++..++++++.+...++
T Consensus       348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999998887777666655554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.41  E-value=1.3e-11  Score=127.84  Aligned_cols=171  Identities=20%  Similarity=0.241  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHH-HHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG  149 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~-~~~~~~~l~~~g  149 (597)
                      ++...+..++..........+.+.|+.+.+|.+..+.+.......++..++.++.|+++|| +|||+ .+.++.++..++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHH
Confidence            3445555666677777778888888888889999999999999999999999999999999 89999 999999988888


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      .+.+...                            .+...+++..++.|++.+...+....++.|.+|+++      |++
T Consensus       256 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~  301 (352)
T cd06174         256 LLLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGT  301 (352)
T ss_pred             HHHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHH
Confidence            8877765                            345677888999999999999999999999999988      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~  276 (597)
                      .+++++...++|..++|.+.+++.+..+|++.|++.++..+++.++.
T Consensus       302 ~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998888777666554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.41  E-value=8.1e-12  Score=131.04  Aligned_cols=167  Identities=16%  Similarity=0.095  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~  151 (597)
                      +.+.+..++..+.......+.+.|. +++|.+..+++.....+.++..++.++.|+++|| +|||+.+.++.++..++..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~  285 (377)
T TIGR00890       208 WVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMA  285 (377)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHH
Confidence            3333344444444444555566664 5689998888999999999999999999999999 8999999998888888777


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (597)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~  231 (597)
                      ++.....                          .+...+++..++.+++.+...+..+.+.+|.+|+++      |++.+
T Consensus       286 ~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~  333 (377)
T TIGR00890       286 AMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANY  333 (377)
T ss_pred             HHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHh
Confidence            6665411                          122334456677888888888888899999999998      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (597)
Q Consensus       232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~  272 (597)
                      ++++....+|..++|.+.|++.++.||++.|.+.+++.+++
T Consensus       334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            99999999999999999999999999999998877655544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.40  E-value=2.4e-11  Score=128.05  Aligned_cols=158  Identities=10%  Similarity=0.043  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007580           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (597)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~  162 (597)
                      ........+++.|+.+++|.++.+.+.......+...++.+++|+++|| +|||+++.++.++..++.......      
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~------  285 (375)
T TIGR00899       213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAAD------  285 (375)
T ss_pred             HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHH------
Confidence            3334455677889999999999999988877777778888999999999 899999888776555444433332      


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007580          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (597)
Q Consensus       163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~  242 (597)
                                            ++...+++.+.+.|++.+...+....+..|.+|+ +      |++.+++++...++|.
T Consensus       286 ----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~  336 (375)
T TIGR00899       286 ----------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGW  336 (375)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHH
Confidence                                  3455666777888998888888888888898875 3      5699999999999999


Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007580          243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (597)
Q Consensus       243 ~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~  276 (597)
                      .++|.+.|++.+..||+..|++.++..+++.++.
T Consensus       337 ~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       337 IIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887766665554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.40  E-value=1.3e-11  Score=132.64  Aligned_cols=174  Identities=10%  Similarity=0.022  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCC--------hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           76 GNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s--------~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      +..++..........+++.|+.+ .+.+        ....+...+...+...++.++.|+++|| +|||+++.++.++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~  292 (418)
T TIGR00889       215 FFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWA  292 (418)
T ss_pred             HHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHH
Confidence            33444444444455666777754 4543        3566888888889999999999999999 899999999999888


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++..++.....                        +..+...+++.+++.|++.+...++...+++|.+|+++      |
T Consensus       293 v~~~l~~~~~~------------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~  342 (418)
T TIGR00889       293 LRFGFFAYGDP------------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------R  342 (418)
T ss_pred             HHHHHHHHcCc------------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence            87766665311                        00134567778899999999988999999999999998      9


Q ss_pred             hhHHHHHH-HHHHHHHHHHHHHHHHhhhc------cchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          228 DRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       228 ~~~~~~~~-~~~~lg~~l~p~i~~~i~~~------~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      ++.+++++ ....+|..+||+++|++.++      +||++.|.+.+++.+++.++++...+
T Consensus       343 g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       343 ASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999987 56789999999999999887      46999999888776666665555554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.39  E-value=3.3e-10  Score=120.05  Aligned_cols=184  Identities=12%  Similarity=0.096  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHHHH-HHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTTIYL  147 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~~-~~~~~l~~  147 (597)
                      +.-.+..+..++.+-.+..++..|.++.+|+++..+|.+..+.-+.=++.-|+.|.++||.   |||+|-. +.+.+.++
T Consensus        15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~   94 (467)
T COG2211          15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA   94 (467)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence            3333445555666667778899999999999999999999999999999999999999983   7876655 45567777


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      +..+++..+..         .+.             +......++.-.+.+++...+.....++.+++.++.++     |
T Consensus        95 i~~~l~F~~p~---------~~~-------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R  147 (467)
T COG2211          95 IVAVLLFITPD---------FSM-------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----R  147 (467)
T ss_pred             HHHHHHHcCCC---------ccc-------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----H
Confidence            77777776521         010             02345556666788999999999999999999875432     9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhh-------ccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      .+..++.....++|..+...+...+..       ..||+..-.+.+++..+..+.++...++
T Consensus       148 ~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~E  209 (467)
T COG2211         148 ASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKE  209 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999888888887665555444332       3477777777666666666555554443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.39  E-value=1.8e-11  Score=133.02  Aligned_cols=175  Identities=17%  Similarity=0.130  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc--chHHHHH-HHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GRYWTIA-IFTTIY  146 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~--GR~~~~~-~~~~l~  146 (597)
                      .++...+..++.....+++..++|.|++++.|++..+++.....+.++..++.+++|+++|| +  |||+... ....+.
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~  332 (452)
T PRK11273        254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLV  332 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHH
Confidence            46666666677777778888999999999999999899988888889999999999999999 7  5554322 222333


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .++.....+...                          .+....++..++.|.+..+.......+..|.+|++.      
T Consensus       333 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------  380 (452)
T PRK11273        333 TIATIVYWLNPA--------------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------  380 (452)
T ss_pred             HHHHHHHHHhcc--------------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------
Confidence            333332222100                          123333444555555444444444556789999998      


Q ss_pred             hhhHHHHHHHHHHHHHHH-HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580          227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l-~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      |++.+++++...++|+.+ +|.+.|++.++.||++.|++.++..+++++...
T Consensus       381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            999999998888888765 799999999999999999987776665554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.38  E-value=2.7e-11  Score=129.32  Aligned_cols=165  Identities=12%  Similarity=0.049  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 007580           79 MAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (597)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~  155 (597)
                      ++.......+.+.++.|+.+..+....   ..+.+...+.++..++.++.|+++|| +|||+++.++.++..++.+.+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~  307 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSF  307 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHH
Confidence            334444455667778888765443222   23455556677788888999999999 89999999888877766665554


Q ss_pred             hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007580          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (597)
Q Consensus       156 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~  235 (597)
                      .                            .+...+++.+++.|++.+...+...+.+.+..|++.      |++.+++++
T Consensus       308 ~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~  353 (408)
T PRK09874        308 V----------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQ  353 (408)
T ss_pred             h----------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHH
Confidence            3                            244567778889999999999999999999998888      999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       236 ~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      ....+|..+||.++|++.+..||++.|++.+++.+++.++.+.
T Consensus       354 ~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        354 SFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988877766655544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.37  E-value=4.7e-12  Score=112.89  Aligned_cols=132  Identities=20%  Similarity=0.222  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHH
Q 007580          112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY  191 (597)
Q Consensus       112 ~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~  191 (597)
                      ..+.++..++.++.|+++|| +|||+.+..+..+..++.+.+...                            .+...++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~   55 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLI   55 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHH
Confidence            34567788899999999999 899999999988888887777654                            3566778


Q ss_pred             HHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 007580          192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (597)
Q Consensus       192 ~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~  271 (597)
                      +.+++.|++.+...+....++.|.+|+++      |++..++.+....+|..++|.+.+++.+..+|++.|++.++..++
T Consensus        56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (141)
T TIGR00880        56 IARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA  129 (141)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence            88999999999999999999999999998      999999999999999999999999999989999999887776665


Q ss_pred             HHHHHHH
Q 007580          272 SNMLFFI  278 (597)
Q Consensus       272 ~~~~~~~  278 (597)
                      ..+....
T Consensus       130 ~~~~~~~  136 (141)
T TIGR00880       130 AFILLAF  136 (141)
T ss_pred             HHHHHhh
Confidence            5554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.37  E-value=3e-11  Score=130.56  Aligned_cols=178  Identities=16%  Similarity=0.110  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc--c-hHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--G-RYWTIAIFTTIY  146 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~--G-R~~~~~~~~~l~  146 (597)
                      .++.+.+..++..+.++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++|| +  + |++......+..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHH
Confidence            35555555666677777888899999998999999999999999999999999999999999 6  2 333222221111


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .+....+.....                          .+.....+..++.|++..+.........+|.+|+++      
T Consensus       323 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------  370 (434)
T PRK11663        323 LLSVGSLWLMPF--------------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------  370 (434)
T ss_pred             HHHHHHHHHccc--------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------
Confidence            111111111100                          122223333344454444333444566789999888      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~  280 (597)
                      |++..++.+...++|..++|.+.|++.+..||+..|++.+++.+++.+..+...
T Consensus       371 ~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        371 AGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             HHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988887766655544433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.37  E-value=3.9e-11  Score=126.40  Aligned_cols=178  Identities=13%  Similarity=-0.000  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH-HHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIYLA  148 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~-~~~~~l~~~  148 (597)
                      .++..++..++.....+.+..+++.|+.+.+|.+..++++......++..++.+++|+++|| +|||+.. ........+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~  294 (399)
T TIGR00893       216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAII  294 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHH
Confidence            46666777777788888888999999999999999999999999999999999999999999 8988611 111111111


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                      +.+...+........                     .+.... +...+.+.+..+..+...++.+|.+|+++      |+
T Consensus       295 ~~~~~~~~~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g  346 (399)
T TIGR00893       295 AGLVLSLLMFATNYV---------------------NIPYAA-LALVALGFFGLGAGAIGWALISDNAPGNI------AG  346 (399)
T ss_pred             HHHHHHHHHHHhccc---------------------hhHHHH-HHHHHHHHhchhhhhHHHHHHHhhcChhH------HH
Confidence            111111110000000                     122223 33333344444478899999999999999      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHH
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF  276 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~  276 (597)
                      +.+++++...++|..++|.+.+++.+..| |++.|++.++..+++.++.
T Consensus       347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988 9999988777666655544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.36  E-value=4.3e-12  Score=122.64  Aligned_cols=156  Identities=13%  Similarity=0.183  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      ...+.++..|-..+. |---..+..+...+.++..++..++.+.|..-..+.+.++|||.||.+|-|..-++-+.+..+|
T Consensus        45 ~lv~mc~lgfgsyfc-yd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G  123 (459)
T KOG4686|consen   45 ALVFMCLLGFGSYFC-YDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG  123 (459)
T ss_pred             HHHHHHHhcccceee-cCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence            444455544544444 3333456677777888888888999999999999999999999999999887766666666777


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      -++.+.-...                         ..+++...+|++.|+|.-....+...+..-+|..++      ...
T Consensus       124 qliFa~Ggi~-------------------------~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~  172 (459)
T KOG4686|consen  124 QLIFAAGGIS-------------------------HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNF  172 (459)
T ss_pred             HHHHHhchHH-------------------------HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccc
Confidence            7776643221                         467899999999999998888899999999999999      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~g  257 (597)
                      .|++......+|..+-..+.+++.++.+
T Consensus       173 vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  173 VFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             hhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence            9999988889999888788888877654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.36  E-value=1.3e-11  Score=130.29  Aligned_cols=167  Identities=15%  Similarity=0.083  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~  148 (597)
                      +.++...+..++.....+.+..+++.|+++++|.+..+.+.......++..++.+++|+++|| +|||+.+.++..+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~  297 (394)
T TIGR00883       219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAAL  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHH
Confidence            345666666777777878888899999999999999999998899999999999999999999 8999987765544433


Q ss_pred             HH-HHH-HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          149 GL-TGI-TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       149 g~-~~~-~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .. ... .....                          .+...+++...+.+++.+...+...+++.|.+|+++      
T Consensus       298 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------  345 (394)
T TIGR00883       298 LAVPLLMALLDS--------------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------  345 (394)
T ss_pred             HHHHHHHHHhcC--------------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------
Confidence            22 111 11100                          234556667788889888899999999999999998      


Q ss_pred             hhhHHHH-HHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHH
Q 007580          227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA  268 (597)
Q Consensus       227 R~~~~~~-~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~  268 (597)
                      |++++++ +.....+|..++|.++|++.++.| |++.++..+..
T Consensus       346 ~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       346 RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            8888887 556677899999999999999888 88776655543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.35  E-value=2.8e-11  Score=132.85  Aligned_cols=151  Identities=17%  Similarity=0.135  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580           86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (597)
Q Consensus        86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  165 (597)
                      +.+..++|.|+++++|++..+++...+.+.++..++.+++|+++|| +|||+++.++.++..++.++......       
T Consensus       292 ~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~-------  363 (496)
T PRK03893        292 WPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIGG-------  363 (496)
T ss_pred             chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhccc-------
Confidence            3466788999988999999999999999999999999999999999 89999988887665555443332210       


Q ss_pred             CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (597)
Q Consensus       166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~  245 (597)
                                         .+...+.+..++.++...+..+..++++.|.+|++.      |++.+++++...++|..+|
T Consensus       364 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lg  418 (496)
T PRK03893        364 -------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALA  418 (496)
T ss_pred             -------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHH
Confidence                               233333344444444444456677788999999988      9999999999999999999


Q ss_pred             HHHHHHhhhccchHHHHHHHHHHH
Q 007580          246 FTLVVYIQMEHGWGSAFGALAIAM  269 (597)
Q Consensus       246 p~i~~~i~~~~gw~~~f~i~~~~~  269 (597)
                      |.++|++.+.+||+..+.+.+...
T Consensus       419 p~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        419 PILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHH
Confidence            999999999999998876655443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.35  E-value=6.6e-11  Score=126.40  Aligned_cols=167  Identities=11%  Similarity=-0.000  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (597)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~  154 (597)
                      ....++.....+.+..+++.|+.+ .|++..+.+.....+.++..++.++.|+++|| +|||+.+.++.+...++...+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~  303 (406)
T PRK11551        226 WISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALA  303 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Confidence            333444455566777788888865 79999999999999999999999999999999 8999998887665555554444


Q ss_pred             HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (597)
Q Consensus       155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~  234 (597)
                      ..                            .+...+++..++.|++.++..+...++..|.+|+++      |++.++++
T Consensus       304 ~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  349 (406)
T PRK11551        304 AA----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAA  349 (406)
T ss_pred             hc----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHH
Confidence            33                            233445566677888888888889999999999999      99999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHH
Q 007580          235 YLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       235 ~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      +....+|..++|.+.|++.++. +|...+++.....+++.++.+
T Consensus       350 ~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        350 VAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998864 456666655555544444433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.34  E-value=1.2e-10  Score=124.15  Aligned_cols=176  Identities=15%  Similarity=0.043  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~  150 (597)
                      .+.+.+..++..++++++..+++.|+.+ +|.+..+++...+.+.++..++.++.|+++|| +|||+.+.++..+..++.
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~  284 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGF  284 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence            4445555566677888888999999976 89999999999999999999999999999999 899999988877776666


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC-CCCchhhhhhhh
Q 007580          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLDR  229 (597)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~-~~~~~~~~~R~~  229 (597)
                      ..+....                           .+...+.  .++.|++.+...+.......+.++ +++      |++
T Consensus       285 ~~~~~~~---------------------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~  329 (393)
T PRK09705        285 CGFIWLP---------------------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGK  329 (393)
T ss_pred             HHHHHcc---------------------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHH
Confidence            5544321                           1111222  245688888888887777778886 445      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLY  283 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~  283 (597)
                      .+++.+...+++..++|.+.|++.|..| |...|++.+...++..++.+...++.
T Consensus       330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999876 78888877776666665555555443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.34  E-value=1.4e-10  Score=123.47  Aligned_cols=170  Identities=15%  Similarity=-0.040  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (597)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~  154 (597)
                      .+..++.....++...++++|+.+.+|.+..++++....+.++..++.++.|+++|| +|||+.+ ++..+..++.....
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~~~~l~  288 (390)
T PRK03545        211 YLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVCLLLLL  288 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHHHHHHH
Confidence            333444445556666778889988899999999999999999999999999999999 8988654 44444333333322


Q ss_pred             HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (597)
Q Consensus       155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~  234 (597)
                      ...                           .+...+++..++.|++.+...+...+.+.+..| +.      |+++++++
T Consensus       289 ~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~  334 (390)
T PRK03545        289 PAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALF  334 (390)
T ss_pred             HHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHH
Confidence            110                           345566677788888888777777788888766 46      88999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580          235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (597)
Q Consensus       235 ~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~  280 (597)
                      +....+|..+||.++|++.++.|++..|++.+++.+++++......
T Consensus       335 ~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        335 SGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999988887777666655433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.34  E-value=2.2e-11  Score=130.87  Aligned_cols=161  Identities=12%  Similarity=0.096  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580           83 MAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (597)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~  159 (597)
                      +.+.....+++.|+.+.+   +.+..+.+.+.+...++..++.+++|+++|| +|||+.+.++.++..++..++.++   
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~---  312 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFA---  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhc---
Confidence            333334445677776543   5566677888888888899999999999999 899999999988888887777765   


Q ss_pred             cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHH-HHHHH
Q 007580          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSV  238 (597)
Q Consensus       160 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~-~~~~~  238 (597)
                                               .+...+++.+++.+++.+...+....++.|.+|++.      |++..+. ++...
T Consensus       313 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~  361 (420)
T PRK09528        313 -------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAK  361 (420)
T ss_pred             -------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHH
Confidence                                     355677788889999988888888899999999887      7777655 67778


Q ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       239 ~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      .+|..++|.+.|++.+..||+..|.+.+++.++..++.+.
T Consensus       362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999877766655544443

>PRK12382 putative transporter; Provisional

Probab=99.33  E-value=5.2e-11  Score=126.67  Aligned_cols=161  Identities=14%  Similarity=0.091  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580           80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (597)
Q Consensus        80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~  159 (597)
                      +..+.+..+..+.+.|+.+ .+++.  .+.....+.++..++.++.|++.|| +|||+.+.++..+..++..+..+.   
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~---  299 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLA---  299 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHc---
Confidence            3445555666777778754 46543  4556667778888999999999999 899999999888888877766554   


Q ss_pred             cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 007580          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT  239 (597)
Q Consensus       160 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~  239 (597)
                                               ++...+++..++.|++.+...+...+...|.+|+++      |++.+++++....
T Consensus       300 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~  348 (392)
T PRK12382        300 -------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD  348 (392)
T ss_pred             -------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence                                     344566778888999999888888889999999988      9999999999999


Q ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       240 lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      +|..++|.+.+++.++.||++.|.+.++..+++.++.+.
T Consensus       349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999988877766665544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.32  E-value=1.8e-10  Score=122.18  Aligned_cols=168  Identities=10%  Similarity=-0.073  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .++..++..++...+.+...++.++|+++ +|.+..+.+...+...++..++.++.+++.|| +|+|+.+.++.+...+.
T Consensus       206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~  283 (382)
T TIGR00902       206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGR  283 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHH
Confidence            45555666677777778888899999964 89999999999888999999999999999999 89999999999999998


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      .+.++.+                            ++...+++.+.+.|+..+...+....++.+. |+++      |++
T Consensus       284 ~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~  328 (382)
T TIGR00902       284 WAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAK  328 (382)
T ss_pred             HHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHH
Confidence            8887765                            5677888899999999999999999999988 8877      899


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007580          230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (597)
Q Consensus       230 ~~~~~~-~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~  275 (597)
                      +.++++ ....+|..++|.++|++.|+.|+ ..|++.+.+.++++++
T Consensus       329 ~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       329 LQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            999976 46789999999999999999886 5677666665555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.32  E-value=8.6e-11  Score=126.19  Aligned_cols=163  Identities=12%  Similarity=-0.025  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580           86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (597)
Q Consensus        86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  165 (597)
                      +++..+++.|+.+.+|.+..+.+++.+.+.++..++.++.++++|| .++++.+..+.++..++.+++.+.         
T Consensus       240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~---------  309 (417)
T PRK10489        240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLM---------  309 (417)
T ss_pred             HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHcc---------
Confidence            5566788899988899999999999999999999999999999998 788888888877777776666543         


Q ss_pred             CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (597)
Q Consensus       166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~  245 (597)
                                         ++....+++.++.|++.+...+...+++.|.+|++.      |++.+++++...++|..+|
T Consensus       310 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g  364 (417)
T PRK10489        310 -------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIG  364 (417)
T ss_pred             -------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHH
Confidence                               345556677788888888877888899999999988      9999999999999999999


Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580          246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY  283 (597)
Q Consensus       246 p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  283 (597)
                      |.+.|++.+..|++..+++.+...++..++.....+++
T Consensus       365 ~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        365 AALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999998888877766555444444443433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.32  E-value=4.7e-11  Score=126.87  Aligned_cols=165  Identities=14%  Similarity=0.067  Sum_probs=128.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      ++|.....+....++..+...+...+++.|+.+++|++..+.+++...+.++..++.++.|+++|| +|||+.+.++.++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~  313 (405)
T TIGR00891       235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLA  313 (405)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHH
Confidence            444444444444445555556777788999999999999999999999999999999999999999 8999998888765


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      ..+........ .                          .+...+.++.++.+++.++..+...+++.|.+|+++     
T Consensus       314 ~~~~~~~~~~~-~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  361 (405)
T TIGR00891       314 GQLLIIPVFAI-G--------------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ-----  361 (405)
T ss_pred             HHHHHHHHHHh-C--------------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence            43322221111 0                          234455566677777777778888899999999998     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHH
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA  264 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i  264 (597)
                       |++.+++.+...++|..++|.+.|++.++.| |+..+..
T Consensus       362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence             9999999999999999999999999999988 8776654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.31  E-value=1.1e-10  Score=126.11  Aligned_cols=161  Identities=15%  Similarity=0.072  Sum_probs=114.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~  146 (597)
                      +|+.....++..++....++++..++|.|+++.+|++..++++....+.++..++.+++|+++|| +|||+++.++.++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~  314 (434)
T PRK15075        236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLA  314 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence            34434444444555667778888999999999899999888888888888899999999999999 89999887765443


Q ss_pred             HHHHH-HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          147 LAGLT-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       147 ~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      .+... .......      .                   .+...+.+..++.+++.+...+....++.|.+|++.     
T Consensus       315 ~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~-----  364 (434)
T PRK15075        315 ILTAYPALSWLVA------A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV-----  364 (434)
T ss_pred             HHHHHHHHHHHHc------C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence            32211 1111100      0                   122233344455666777766777788999999999     


Q ss_pred             hhhhHHHHH-HHHHHHHHHHHHHHHHHhhhccchH
Q 007580          226 HLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWG  259 (597)
Q Consensus       226 ~R~~~~~~~-~~~~~lg~~l~p~i~~~i~~~~gw~  259 (597)
                       |++++++. +.+..+++.++|.+.+++.++.|+.
T Consensus       365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence             99999985 4444556788999999999988854

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.30  E-value=1.9e-10  Score=121.90  Aligned_cols=153  Identities=16%  Similarity=0.139  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007580           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (597)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~  162 (597)
                      +.+.....+++.|+++ .|.+..+++...+.+.++..++.++.|+++|| +|||+++.++.++..++..... .      
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~------  284 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-S------  284 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-h------
Confidence            3444455667888865 69999899998999999999999999999999 8999999888777766654432 1      


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 007580          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (597)
Q Consensus       163 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~  242 (597)
                                             . ..++..+++.|++.+...|...+.+.|..|+++      ++...+.++...++|.
T Consensus       285 -----------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~  334 (381)
T PRK03633        285 -----------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS  334 (381)
T ss_pred             -----------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence                                   1 123345667787777888999999999998877      7778888888899999


Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007580          243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (597)
Q Consensus       243 ~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~  274 (597)
                      .+||.++|++.|+.||++.|.+.+.+.++..+
T Consensus       335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~  366 (381)
T PRK03633        335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999987776654443

>TIGR00897 2A0118 polyol permease family

Probab=99.28  E-value=4.4e-10  Score=120.18  Aligned_cols=174  Identities=15%  Similarity=0.048  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHH-HHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAG  149 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~-~~~~l~~~g  149 (597)
                      ++...+..++....++++..++|.|++ ++|++..+++.....+.++..++.++.|+++|| +|||+.+. .+.+...++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~  301 (402)
T TIGR00897       224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIF  301 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHH
Confidence            455555667777788888899998885 589999999988888999999999999999999 89888764 233323333


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      .+.+.......                       ..+...+++..++.|++.+...+. .....|..| ++      |++
T Consensus       302 ~~~l~~~~~~~-----------------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~  350 (402)
T TIGR00897       302 TLALYYIPQHF-----------------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGA  350 (402)
T ss_pred             HHHHHHHHHcc-----------------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHH
Confidence            22222211000                       023445566777788888776554 455666544 46      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      .+++++....+|..++|.+++++.+..||...|++.+++.+++.++..
T Consensus       351 ~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       351 AMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988877666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.27  E-value=9.4e-11  Score=124.38  Aligned_cols=190  Identities=13%  Similarity=0.054  Sum_probs=145.1

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccch-HHHH
Q 007580           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTI  139 (597)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-~~~~  139 (597)
                      ...+.+||.+++..+..|+..+.++.+.+..-+|+++ +.+-+.+-.|+++++..++.+++.++.|+.+.| .|. |+.+
T Consensus        27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pl  105 (488)
T KOG2325|consen   27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPL  105 (488)
T ss_pred             cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCH
Confidence            3456689999999999999999988888877889876 467777788999999999999999999999999 674 7778


Q ss_pred             HHHHHHHHHHHHHH-HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 007580          140 AIFTTIYLAGLTGI-TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (597)
Q Consensus       140 ~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~  218 (597)
                      +.+.++.++|.++. +++..     |+                   ...++++++|++.|+|.|.. ...-++++|....
T Consensus       106 i~s~ii~~~g~llY~~l~~~-----~~-------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~  160 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYV-----PN-------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTV  160 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-----cc-------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc
Confidence            88889999999998 44421     11                   25678999999999998764 5678899998888


Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh----hc---------cchHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----ME---------HGWGSAFGALAIAMGISNMLFFIGTPLY  283 (597)
Q Consensus       219 ~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~----~~---------~gw~~~f~i~~~~~~~~~~~~~~~~~~~  283 (597)
                      ++      |.++++....+..+|..+||.+...+.    +.         .-+..+-|+.+++.++.+++..++.++.
T Consensus       161 ~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  161 ED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             cc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            88      999998877777777777777664432    11         1134556666666666666555555543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.26  E-value=5.2e-10  Score=122.75  Aligned_cols=171  Identities=11%  Similarity=0.084  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH-HHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 007580           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA  157 (597)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~-~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~  157 (597)
                      ++..++.+....+.++|+.+++|++..+.+.... ...++..++.+++|+++|| +|||+.+.++.++..++...+....
T Consensus       232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l~  310 (491)
T PRK11010        232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLLS  310 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555556677888988889999999998874 5567899999999999999 8999988776665555443332211


Q ss_pred             hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007580          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS  237 (597)
Q Consensus       158 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~  237 (597)
                      ..    .                    .+...+.+..++..++.|...+...++..+..+++.      +++.+++.+..
T Consensus       311 ~~----~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~  360 (491)
T PRK11010        311 IT----D--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSAL  360 (491)
T ss_pred             hc----c--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHH
Confidence            10    0                    133334445556555556555667788888999888      78889999999


Q ss_pred             HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580          238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (597)
Q Consensus       238 ~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~  280 (597)
                      .++|..+++.+.|++.+..||+..|.+.+++.++++++....+
T Consensus       361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888887777766655543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.26  E-value=4.6e-10  Score=121.69  Aligned_cols=185  Identities=13%  Similarity=0.049  Sum_probs=148.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchH--HHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTT  144 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~--~~~~~~~~  144 (597)
                      +.+.+...++..++.+-+...+......|.++++|++..+...+.....+...++.+++|++.|| +|.|  ++++++.+
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence            34566677777788888888899999999999999999998888888899999999999999999 8988  88888877


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      ++.+-.+.-.+- ..+....                   ..+.+.+++.-++.|+..|+.++..-++.+++.|+++    
T Consensus       358 ~~~~i~~~g~~G-~~~~~~g-------------------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~----  413 (477)
T PF11700_consen  358 LWIIIPLYGLFG-FWPSFFG-------------------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR----  413 (477)
T ss_pred             HHHHHHHHHHHH-hhhcccC-------------------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch----
Confidence            663322221110 0000000                   0244567777779999999999999999999999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~  278 (597)
                        .+.+|++|.+..-..+++||++.|.+.+..| -|+++....+..++++++++.
T Consensus       414 --e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  414 --EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence              8999999999999999999999999999876 899988777777777666544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.25  E-value=1.9e-10  Score=125.10  Aligned_cols=170  Identities=7%  Similarity=-0.033  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc-cchHHHHHHHH--HHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFT--TIY  146 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~-~GR~~~~~~~~--~l~  146 (597)
                      .++..++..++..++++....+++.|+. ++|++..+++...+...++..++.+++|+++||. +++++...++.  ++.
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  320 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN  320 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence            3555555666677777788888899986 4799999999999999999999999999999972 23344343333  222


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .++.+++...                            .+...+++.+++.|++.+...++..+++.|.+|+++      
T Consensus       321 ~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------  366 (455)
T TIGR00892       321 GLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------  366 (455)
T ss_pred             HHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------
Confidence            3333333332                            355677788899999999999999999999999988      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHH
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNM  274 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~~~~~  274 (597)
                      +++.+++++...++|..+||.++|++.+.. +|++.|++.+++.+++.+
T Consensus       367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            999999999999999999999999999877 599999988876655444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.25  E-value=1.9e-10  Score=124.56  Aligned_cols=189  Identities=13%  Similarity=-0.006  Sum_probs=128.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      ++.++..++..+......+.+..+ .+++.+++|++..++++....+.++..++.+++|+++|| +|||+.+.++.++..
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~  360 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYY-SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMA  360 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence            334444444444433333333334 455566789998888888888899999999999999999 899999999988777


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++..++.+......  +.              .+ ...+...+....++.+....+..+....+.+|.+|++.      |
T Consensus       361 ~~~~~~~~~~~~~~--~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~  417 (481)
T TIGR00879       361 ICLFVLGILGASFV--TG--------------SS-KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------R  417 (481)
T ss_pred             HHHHHHHHHhhccc--CC--------------cc-cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------H
Confidence            77766663211000  00              00 00122222222223333333344666778899999998      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      ++..++.+...++|.+++|.+.+++.++.+|++.|++.+++.+++.++.++..+
T Consensus       418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       418 PKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence            999999999999999999999999999889999998887776666655544443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.24  E-value=7.1e-10  Score=119.75  Aligned_cols=172  Identities=10%  Similarity=0.021  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (597)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~  154 (597)
                      ....++....+|++..++|.|+.+.+|.+..+++...+...++..++.++.|+++|| +|||+++.++.++..+......
T Consensus       249 ~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~  327 (432)
T PRK10406        249 LGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPIL  327 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHH
Confidence            333344467788899999999999999999888888887777788888999999999 8999988776654433322221


Q ss_pred             HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (597)
Q Consensus       155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~  234 (597)
                      .....    .                    .+....+....+..++.+...+....+.+|.||++.      |++++++.
T Consensus       328 ~~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~  377 (432)
T PRK10406        328 SALQN----V--------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLS  377 (432)
T ss_pred             HHHHc----C--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHH
Confidence            11000    0                    111221222222223333344556788899999999      99999996


Q ss_pred             HHHH-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580          235 YLSV-TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       235 ~~~~-~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      +... .+++..+|.+.+++.....|...++..++..+++.+..+
T Consensus       378 ~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        378 YAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            6544 444556888888664432355555555554444444433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.21  E-value=1.1e-09  Score=112.90  Aligned_cols=163  Identities=10%  Similarity=0.023  Sum_probs=125.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      .+..++..+..|+...+-.++..|++.|+.+.  +|+++.+++...+.+..+..++.+++++++|| +|+|+++.++.++
T Consensus       139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l  217 (310)
T TIGR01272       139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFL  217 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHH
Confidence            33455555666665556678889999999854  79999999999999999999999999999999 8999998888877


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      .+++.++....                            .+.. ...+..+.|++.+...|...+...+.+|++. +   
T Consensus       218 ~~~~~~l~~~~----------------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-~---  264 (310)
T TIGR01272       218 AVLLSIGAALT----------------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-S---  264 (310)
T ss_pred             HHHHHHHHHHc----------------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-h---
Confidence            77666544432                            1111 2235558899999999999999999888653 1   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~  268 (597)
                       +++  ++. ....+|+++.|.+.|++.|..|.+++|++..++
T Consensus       265 -~as--ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       265 -QGS--GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             -hhH--HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence             333  343 456789999999999999999999888755543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.21  E-value=3.5e-10  Score=122.40  Aligned_cols=179  Identities=15%  Similarity=0.083  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH-
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA-  148 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~-  148 (597)
                      .++...+..++.....+++..++|.|+++..|++..++++....+.++..++.+++|+++|| +||++....+..+..+ 
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHH
Confidence            45555556666667778888999999999899999999999999999999999999999999 7644322223222211 


Q ss_pred             --HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          149 --GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       149 --g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                        +...+...       +.                   .+.....+..++.|++..+..........|.+|++.      
T Consensus       331 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------  378 (438)
T TIGR00712       331 TIAVIVYWMN-------PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------  378 (438)
T ss_pred             HHHHHHHHhc-------CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------
Confidence              11111111       00                   122233334445555444433333456789999988      


Q ss_pred             hhhHHHHHHHHHHHHH-HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          227 LDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~-~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      |+++.++++...++|+ .++|.+.|++.++.||.+.|++.+...+++.+..+...+
T Consensus       379 ~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
T TIGR00712       379 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  434 (438)
T ss_pred             eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988888774 689999999999999999998877766666555544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.9e-09  Score=112.04  Aligned_cols=177  Identities=15%  Similarity=0.086  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .++..++..++...+.|...+++-+++++..|++....+++...|.++..++.+++|+++||  +.|+++....++..+.
T Consensus       212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~  289 (394)
T COG2814         212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALA  289 (394)
T ss_pred             hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHH
Confidence            46677777888888889999999999999999999999999999999999999999999998  8888888887777776


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ...+.+..                           .+....++..++.|+...........-.++ .-++.      ++.
T Consensus       290 ~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~  335 (394)
T COG2814         290 LLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADL  335 (394)
T ss_pred             HHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHH
Confidence            66666542                           244555566666777777766666666677 33455      799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      ..+++....|+|..+|..++|.+.++.|+....++.++..+++.++.+...+.
T Consensus       336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998888877776654443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.18  E-value=3.6e-10  Score=118.63  Aligned_cols=161  Identities=16%  Similarity=0.122  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH--HHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT--IYL  147 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~--l~~  147 (597)
                      .++.+.+..++.....+++..+++.|+.+.+|.+..+++...+.+.++..++.++.|+++||..+||+.......  ...
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            455666666677777778888999999999999999999999999999999999999999983334433222211  111


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++.......       +.                   .+...+++..++.|+...+..+....+..|.+|++.      |
T Consensus       297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  344 (379)
T TIGR00881       297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A  344 (379)
T ss_pred             HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence            121111111       00                   233445555666777666666777788999999998      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHH
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF  262 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f  262 (597)
                      ++..++++...++|..++|.+.|++.++.||++.|
T Consensus       345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999999999999999998764

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.17  E-value=2.5e-09  Score=110.77  Aligned_cols=162  Identities=12%  Similarity=-0.024  Sum_probs=119.0

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHH
Q 007580           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (597)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~  141 (597)
                      +.-++||..++...+..+.+.+.. .-......|....++ +...+-|...+|.+.+....+.+-|+.|+ +|-|.++++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qW-I~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQW-IQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchh-eeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHH
Confidence            455678876666666666654442 222334556777778 66677788899999999999999999999 899999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhH--HHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM--LYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (597)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~--~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (597)
                      +..+..+|..+=.++... ...                     +.+  ...+.+..+.+..+-.+...-+-+.+-+|+++
T Consensus       115 gt~ln~iGa~Ir~iss~p-~v~---------------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~  172 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLP-FVP---------------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPD  172 (480)
T ss_pred             HHHHHHHHHHHhhhccCc-ccc---------------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcc
Confidence            999999999887776431 111                     122  25667777777777777666677788999999


Q ss_pred             CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (597)
Q Consensus       220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~  254 (597)
                      +      |..+..+-.++..+|.+++.++...+..
T Consensus       173 q------ra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  173 Q------RAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             h------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence            9      9999888777777777777666655543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.16  E-value=8.8e-09  Score=106.24  Aligned_cols=57  Identities=21%  Similarity=0.235  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 007580          473 CLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG  529 (597)
Q Consensus       473 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g  529 (597)
                      +++|+..+......=++..+.+|+++.+...|++++....++++||.+++++.+.+|
T Consensus       349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG  405 (438)
T ss_pred             HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence            456777777788888999999999999999999999999999999999999999887

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.16  E-value=2e-09  Score=115.74  Aligned_cols=147  Identities=15%  Similarity=0.042  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007580           84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (597)
Q Consensus        84 ~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~  163 (597)
                      ..+.+..+++.|+.+ .|.+..+.+.....+.++..++.+++|+++|| +|||+.+..+.++..++..+......     
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~-----  318 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIPQ-----  318 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence            334566788888875 69998888888888899999999999999999 89999998888766655444432210     


Q ss_pred             CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 007580          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI  243 (597)
Q Consensus       164 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~  243 (597)
                                           .+...+.+..+..+++..+..+..+.++.|.+|++.      |++.+++.+....+|..
T Consensus       319 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~  371 (426)
T PRK12307        319 ---------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT  371 (426)
T ss_pred             ---------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence                                 111222222222233333445567788899999998      99999999999999999


Q ss_pred             HHHHHHHHhhhccchHHHHHH
Q 007580          244 VAFTLVVYIQMEHGWGSAFGA  264 (597)
Q Consensus       244 l~p~i~~~i~~~~gw~~~f~i  264 (597)
                      ++|.+.|++.+..|+.+..++
T Consensus       372 ~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        372 FNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHHHHHHHHcccHHHHHHH
Confidence            999999999998887654443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.14  E-value=1e-09  Score=117.70  Aligned_cols=164  Identities=9%  Similarity=-0.078  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH-HHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIYL  147 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~-~~~~~l~~  147 (597)
                      .++...+..++....++++..++|.|+.+ ..+.+..+++.......++..++.+++|+++|| +|||+.. .+..++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHH
Confidence            45667777778888889999999999977 346788888888899999999999999999999 7877643 33333333


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++..+....                            .+....+++..+.++|.....+.......|.+|+++      |
T Consensus       322 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~  367 (412)
T TIGR02332       322 AGWLLASAT----------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------R  367 (412)
T ss_pred             HHHHHHHhc----------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------H
Confidence            332211111                            011112222223334443334444455567888888      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHH
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA  268 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~  268 (597)
                      +.++++.+...++|..++|.+.+.+.+..| |+++|++.+++
T Consensus       368 ~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       368 AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999999999999875 99998866553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.14  E-value=7.2e-09  Score=110.83  Aligned_cols=170  Identities=11%  Similarity=-0.101  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~  151 (597)
                      +...+..++.....+......+.|+.+++|+++.+.+.......++..++.++.|+++|| +|||+.+.++.++..++..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~~  296 (406)
T PRK15402        218 VAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGLL  296 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHH
Confidence            333344444445545555667888888899999988887777777888999999999999 8999999998888777777


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (597)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~  231 (597)
                      +..+.....   +                    .+...++++.++.|+|.+...+......... ++++      |++..
T Consensus       297 ~~~~~~~~~---~--------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~  346 (406)
T PRK15402        297 LAALATVIS---S--------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVS  346 (406)
T ss_pred             HHHHHHHcc---c--------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHH
Confidence            776542100   0                    2445567788889999988777666655443 3356      89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (597)
Q Consensus       232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~  272 (597)
                      +.+++...+|..+|+.+.+++.+..++....+..++..++.
T Consensus       347 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        347 AAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            99999999999999999999988878776555544444333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.13  E-value=1.8e-09  Score=112.70  Aligned_cols=153  Identities=9%  Similarity=-0.002  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      ++...+..++....+++.. ...+.|.++.+|.+..+.+.....+.++..++.++.|+++|| +|||+.+..+.++..++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~  290 (365)
T TIGR00900       212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGLA  290 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence            3444444555555555555 666777777799999999999999999999999999999999 89999988887666666


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ..+.....                           .+...+++..++.|++.+...+...+++.|.+|+++      |++
T Consensus       291 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  337 (365)
T TIGR00900       291 ILVVGLTP---------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR  337 (365)
T ss_pred             HHHHHhhc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence            65555431                           125667778889999999999999999999999988      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~g  257 (597)
                      .+++++...++|..++|.++|++.++.|
T Consensus       338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       338 VFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999988654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.13  E-value=5.5e-09  Score=110.84  Aligned_cols=165  Identities=7%  Similarity=-0.105  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .++..++..++....+......++.|+. +.|.+..+.+...+...++..+..++.|++.|| +|+|+.+.++.++..++
T Consensus       206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~  283 (382)
T PRK11128        206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVR  283 (382)
T ss_pred             hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH
Confidence            3444445455555665666777888885 589999889988888888888999999999999 89999999988887777


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ..++..+                            ++...+++..++.|++.+...+....+..+. ++++      +++
T Consensus       284 ~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~  328 (382)
T PRK11128        284 WGLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIR  328 (382)
T ss_pred             HHHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHH
Confidence            7666544                            4566778888999999998888888887776 5555      677


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580          230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (597)
Q Consensus       230 ~~~~~~-~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~  272 (597)
                      ..++++ ....+|..+||.++|++.|..|+. .|++.+++.+++
T Consensus       329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~  371 (382)
T PRK11128        329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence            788765 556788899999999999998874 565555544443

>PRK10504 putative transporter; Provisional

Probab=99.12  E-value=4.5e-09  Score=114.69  Aligned_cols=156  Identities=10%  Similarity=-0.033  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~  150 (597)
                      +...++..++..+++.......+.|++..+|.++.++++....+.++..++.++.|+++|| +|||+++.++.++..++.
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~  341 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALVS  341 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHH
Confidence            4445555566666655555566778877899999999988888888888888999999999 899999998888777766


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (597)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~  230 (597)
                      .++.....      .                   .+...+.+..++.|++.+...+....+..+.+|+++      |+..
T Consensus       342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  390 (471)
T PRK10504        342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG  390 (471)
T ss_pred             HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence            65554311      0                   223334455677888888888889999999999988      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (597)
Q Consensus       231 ~~~~~~~~~lg~~l~p~i~~~i~~~~gw  258 (597)
                      ++++++...+|..+|+.++|.+.+..|+
T Consensus       391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999988776555

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.12  E-value=1.9e-09  Score=111.10  Aligned_cols=181  Identities=13%  Similarity=-0.004  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      ..|.+++..+..--++-++..+++.|++++++.++.+++.....+.+...+..++||+|||| +|.+|+..+...+.+++
T Consensus       219 ~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~~~  297 (417)
T COG2223         219 DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMALA  297 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHHHH
Confidence            57778888888888888999999999999999999999999999999999999999999999 79999888888777777


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ..+..+.....                     ..+.+...++...+..++..|.-...+..++...||++       -+.
T Consensus       298 ~~~l~~~~~~~---------------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~  349 (417)
T COG2223         298 AALLSLFLTGF---------------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGA  349 (417)
T ss_pred             HHHHHcccccc---------------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhH
Confidence            77666542100                     00123344444444455555555556667777777764       588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHh
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG  279 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~  279 (597)
                      ..++.....++|+..-|...+...+..| +...|++.....+++.++.+..
T Consensus       350 v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         350 VTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999988887 9999998888777776655443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.11  E-value=2.4e-09  Score=117.13  Aligned_cols=174  Identities=11%  Similarity=0.039  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHH-----HHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTIY  146 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~-----~~~~~~~l~  146 (597)
                      +.+.+..++.....+.+..+++.|+.+++|++..+++...+.+.++..++.+++|+++|| +|||+     .........
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~  333 (476)
T PLN00028        255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQT  333 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHH
Confidence            334444444444556667788999999999999999999999999999999999999999 78762     222111111


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      ..+...+.+...                          .+....++..++.+++.+...+...++..+..| +.      
T Consensus       334 l~~i~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------  380 (476)
T PLN00028        334 LGGVFCIWLGRA--------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------  380 (476)
T ss_pred             HHHHHHHHhccc--------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------
Confidence            112211221100                          233344444555666665555556666666544 45      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~  280 (597)
                      |+...++.+...++|+.++|.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus       381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            889999987777777777776644 22345799999998877777666655543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.11  E-value=2.3e-08  Score=102.99  Aligned_cols=84  Identities=10%  Similarity=0.027  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---------
Q 007580          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------  255 (597)
Q Consensus       185 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~---------  255 (597)
                      .++..++++.++.|.|.+...+..++++++..++++      +.+.+++......+|..++|.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            467899999999999999999999999999999998      99999999999999999999999987632         


Q ss_pred             -------cchHHHHHHHHHHHHHHHH
Q 007580          256 -------HGWGSAFGALAIAMGISNM  274 (597)
Q Consensus       256 -------~gw~~~f~i~~~~~~~~~~  274 (597)
                             ..|+++|++.+.+..+..+
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   4699998866655444333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.10  E-value=8.1e-09  Score=109.57  Aligned_cols=168  Identities=10%  Similarity=-0.019  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (597)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~  152 (597)
                      ......++.....+....++++|+.+.+|.++.+.+...+.+.++..++.++.|+++|| +|||+.+.++..+..++..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~~  281 (382)
T PRK10091        203 LIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALLM  281 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHHH
Confidence            33333344444445555677888888899999999999999999999999999999999 89999998888877777655


Q ss_pred             HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhh-hhhccCCCCCchhhhhhhhHH
Q 007580          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQFDERSKDYKTHLDRFF  231 (597)
Q Consensus       153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~-~~ad~~~~~~~~~~~~R~~~~  231 (597)
                      .....                           .+....++..++.++|..+..+.... ...+..+++.      ++.. 
T Consensus       282 ~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~-  327 (382)
T PRK10091        282 LFFFG---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA-  327 (382)
T ss_pred             HHHHH---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH-
Confidence            54321                           12233444455556665544444443 3334334333      4433 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHH
Q 007580          232 NFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLF  276 (597)
Q Consensus       232 ~~~~~~~~lg~~l~p~i~~~i~~~-~gw~~~f~i~~~~~~~~~~~~  276 (597)
                       ..+....+|..+||.++|++.+. .+|++.+.+.+...++.....
T Consensus       328 -~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        328 -GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             -HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence             23556789999999999999885 689999988776655544433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.10  E-value=3e-09  Score=103.23  Aligned_cols=174  Identities=17%  Similarity=0.100  Sum_probs=134.4

Q ss_pred             ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHH
Q 007580           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (597)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~  140 (597)
                      ....+.....+|.+..+.++...+.+-+...-+.+.++.+|+|+..++.+.+...+.+++.+++.|.++|+ +||+...+
T Consensus       256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv  334 (459)
T KOG4686|consen  256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWV  334 (459)
T ss_pred             cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhH
Confidence            33333444467888888888777777777777889999999999999999999999999999999999999 79998777


Q ss_pred             HHHHH-HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580          141 IFTTI-YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (597)
Q Consensus       141 ~~~~l-~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (597)
                      .+..+ +.++..++.++.                              ..-+++..+.|+............++-..|++
T Consensus       335 ~~a~~~tl~~H~~l~Ft~------------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~  384 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFTF------------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEE  384 (459)
T ss_pred             HHHHHHHHHHhhhHHhhh------------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence            66554 444555555542                              22355667778887776666778888888999


Q ss_pred             CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc---hHHHHHHHHHHHHH
Q 007580          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGI  271 (597)
Q Consensus       220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g---w~~~f~i~~~~~~~  271 (597)
                      +      .|+++++.+...|+|-.+.|+++|.+.++-|   |--.|++....+++
T Consensus       385 q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL  433 (459)
T KOG4686|consen  385 Q------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMAL  433 (459)
T ss_pred             H------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHH
Confidence            8      9999999999999999999999999998754   44456555444433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.09  E-value=4.4e-09  Score=112.14  Aligned_cols=167  Identities=12%  Similarity=0.080  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580           75 FGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (597)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~  151 (597)
                      ++..++....+.....+.+.|+.+.+   +.+....+...+...+...++.++.|++.|| +|||+.+.++.++..++..
T Consensus       221 ~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~  299 (396)
T TIGR00882       221 VLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRII  299 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHH
Confidence            33344444444455556788887766   4455667777887788888889999999999 8999999998888887776


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (597)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~  231 (597)
                      +...+                            .+...+++.+.+.|++..........+..+.++++.      +++..
T Consensus       300 ~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~  345 (396)
T TIGR00882       300 GSSFA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIY  345 (396)
T ss_pred             HHHhc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEee
Confidence            65543                            345566777888888877766666677778888777      77766


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007580          232 NF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (597)
Q Consensus       232 ~~-~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~  276 (597)
                      +. ++....+|..++|.++|++.+..||+..|.+.+++.++..++.
T Consensus       346 ~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       346 LIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            66 6778899999999999999999999999998887766655443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.09  E-value=8.1e-09  Score=109.84  Aligned_cols=172  Identities=6%  Similarity=-0.102  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH-HHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~  150 (597)
                      +..+...++...+......+.++|+.+ .|+++++.++...... ....++.+++|++.|| +|+|+++.++.++..+..
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~  288 (390)
T TIGR02718       211 WSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLA  288 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Confidence            334444455555556666777888865 7999999998888765 4666778999999999 899999988776653332


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC-CCchhhhhhhh
Q 007580          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR  229 (597)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~R~~  229 (597)
                      ........ ....                     .+...++....+.+++.+...+...+...+..++ +.      +++
T Consensus       289 ~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~  340 (390)
T TIGR02718       289 LLWFAQAA-FWLA---------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGT  340 (390)
T ss_pred             HHHHHHHH-cccC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHH
Confidence            22221110 0000                     1223334444555666777777777777777765 66      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~  273 (597)
                      .+++++...++|..++|.++|++.+..||+..|.+.+++.+++.
T Consensus       341 ~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       341 DVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887766555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.09  E-value=6.6e-09  Score=113.28  Aligned_cols=179  Identities=17%  Similarity=0.077  Sum_probs=123.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH------
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI------  139 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~------  139 (597)
                      -+++.++.+.+..++....++.+..++|.|+.+.+|.+..++++..+...++..++.+++|+++|| +++|+..      
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~  336 (465)
T TIGR00894       258 PKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAAR  336 (465)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHH
Confidence            345577888888899999999999999999999999999999999999999999999999999998 6644211      


Q ss_pred             --HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 007580          140 --AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (597)
Q Consensus       140 --~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~  217 (597)
                        ..+......+..++.....     .                    .+....++...+.+.+.++..+.......|..|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  391 (465)
T TIGR00894       337 KIFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP  391 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh
Confidence              1111111111111111100     0                    122233344445555555555555555556665


Q ss_pred             CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---cchHHHHHHHHHHHHHHHHHHH
Q 007580          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       218 ~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~---~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      . .      ++...++.+...++|+.++|.+.|++.+.   .+|...|++.++..+++.++..
T Consensus       392 ~-~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       392 R-F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             h-H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            4 5      89999999999999999999999998764   3488888888776666655543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.08  E-value=4.9e-08  Score=105.19  Aligned_cols=163  Identities=14%  Similarity=0.037  Sum_probs=118.8

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc--cc--hHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007580           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (597)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~--~G--R~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  166 (597)
                      ....|+++++|+++++.....+...+... .-++.|.++|.+  +|  ||+-++++.++..++...++.....       
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-------   82 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-------   82 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence            34567899999999988877766655554 456889999984  34  5555566766665555555543110       


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 007580          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (597)
Q Consensus       167 ~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p  246 (597)
                                       ..+.....+..++..+|......+..++..|....+...    |+...++.+....+|..++.
T Consensus        83 -----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~  141 (433)
T PF03092_consen   83 -----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGS  141 (433)
T ss_pred             -----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHH
Confidence                             023344556667888999999999999999998655422    78889999999999999999


Q ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       247 ~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      .++|++.+..++++.|.+.++...+..+..+...++
T Consensus       142 ~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  142 LLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999998877766655544444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.07  E-value=7.3e-09  Score=113.18  Aligned_cols=157  Identities=10%  Similarity=-0.044  Sum_probs=112.1

Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccc
Q 007580           94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS  173 (597)
Q Consensus        94 ~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~  173 (597)
                      +++.+++|.+.....+......+...++.+++|+++|| +|||++++++.++..++.+.++.....    +.        
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~----~~--------  361 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYT----QA--------  361 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhc----Cc--------
Confidence            44556788887777777677778888999999999999 899999999999888887777644210    00        


Q ss_pred             cccCCCCCccchhHHHHHHHHHHHHHhhhc-hhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Q 007580          174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV--  250 (597)
Q Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~-~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~--  250 (597)
                                 .. .....+..+.+++.+. ..|+...+++|.+|++.      |++++++.+...++|..+++.+.+  
T Consensus       362 -----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        362 -----------PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             -----------cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                       11 1222333444444443 34677899999999998      999999988888888887755444  


Q ss_pred             ----HhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          251 ----YIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       251 ----~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                          ++.+..+|++.|++.++..+++.++.+...+
T Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             HhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence                4556788999998877766666555544444

>TIGR00895 2A0115 benzoate transport

Probab=99.07  E-value=4.6e-09  Score=111.09  Aligned_cols=149  Identities=15%  Similarity=0.033  Sum_probs=116.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      ++..+.+.+..++....++.+..+++ ++.+++|.+..+++.....+.++..++.+++|+++|| +|||+.+....+...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~  326 (398)
T TIGR00895       249 ARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAV  326 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHH
Confidence            34455555566666777777777776 7778899999999999999999999999999999999 899855444333322


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      +...+....                            .+...+++..++.|++.++..+...++++|.+|+++      |
T Consensus       327 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  372 (398)
T TIGR00895       327 FAVLVGSTL----------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R  372 (398)
T ss_pred             HHHHHHHHh----------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H
Confidence            222222211                            234556677788999999999999999999999998      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYI  252 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i  252 (597)
                      ++.+++++....+|..++|.++|++
T Consensus       373 g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       373 ATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999999999876

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.06  E-value=4.7e-09  Score=114.81  Aligned_cols=155  Identities=13%  Similarity=0.106  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~  150 (597)
                      ++...+..++..+.+++...++|.|+++.+|.++.++++......++..++.++.|++.|| +|||+.+.++.++..++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~  335 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGF  335 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHH
Confidence            3444555666777778888889999999999999999999999999999999999999999 899999999888887777


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (597)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~  230 (597)
                      .++.+...     ++                   .+...++...++.|+|.+...+.......+.+|+++      |+++
T Consensus       336 ~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~  385 (485)
T TIGR00711       336 YWRAFTFT-----PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARG  385 (485)
T ss_pred             HHHhccCC-----CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHH
Confidence            76653211     11                   234456666788999999888888888888889888      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007580          231 FNFFYLSVTVGAIVAFTLVVYIQMEH  256 (597)
Q Consensus       231 ~~~~~~~~~lg~~l~p~i~~~i~~~~  256 (597)
                      .++++...++|..+|+.+.+.+.++.
T Consensus       386 ~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       386 SSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.05  E-value=2.3e-08  Score=106.92  Aligned_cols=153  Identities=15%  Similarity=0.199  Sum_probs=105.1

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHH-HHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007580           91 NMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (597)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c  169 (597)
                      +.+.|+.+++|++..+.++...... ++..++.+++|+++|| +|||+.+.++.++..+..+.+......    +     
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~----~-----  300 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVT----P-----  300 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhc----C-----
Confidence            4456777889999999998876544 5678899999999999 899998877776665554433221110    0     


Q ss_pred             cccccccCCCCCccchhHHHHHHHH----HHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580          170 DRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (597)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~----~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~  245 (597)
                                     .+...+++..    +..|++.+...+....++.+.+|.++      ++    ++....++|..++
T Consensus       301 ---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~l~~~~~  355 (402)
T PRK11902        301 ---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------YA----LLSALASVGRVYV  355 (402)
T ss_pred             ---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------HH----HHHHHHHHHHHHH
Confidence                           1233333333    34566667777777778887777554      43    3444446777666


Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       246 p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      +.++|++.+..||+..|.+.+++.+++.++...
T Consensus       356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            778999999999999999888777666555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.05  E-value=3.9e-09  Score=116.31  Aligned_cols=181  Identities=15%  Similarity=0.082  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH------------HHHHHHHHHHHHhhhhHHHhhcccchH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRY  136 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~------------~~~~~~~~~~~~~~~~G~lsD~~~GR~  136 (597)
                      +..+.+....++..+.+|++..++|.+++ +.|++..+++.            ......++..++.+++++++|| +|||
T Consensus       288 ~~~~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR  365 (502)
T TIGR00887       288 KHLLGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRK  365 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcch
Confidence            33444444555666777888888777774 67876543221            1222334556678889999999 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccC
Q 007580          137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF  216 (597)
Q Consensus       137 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~  216 (597)
                      ++++++.++..++..+..+.....   +                    .+ ..+....+...++..+..+....+.+|.+
T Consensus       366 ~~l~~~~~~~~~~~~~l~~~~~~~---~--------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       366 PIQLMGFFILTVLFFVLGFAYNHL---S--------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhc---c--------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            999888877776666555432100   0                    11 11111111222223334556677789999


Q ss_pred             CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc----------cchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       217 ~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~----------~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      |.+.      |+++.++.+....+|++++|.+.+++.+.          .++...|++.++..+++.+.. +..++
T Consensus       422 p~~~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpE  490 (502)
T TIGR00887       422 PTRY------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPE  490 (502)
T ss_pred             chhH------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEecc
Confidence            9999      99999999999999999999999998874          334556666666555554433 33343

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.04  E-value=8.4e-09  Score=111.25  Aligned_cols=160  Identities=16%  Similarity=0.051  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .++.+++..++..++.+......+.|++..++ +....++......++..++.++.++++|| +|||+++.++.++..++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~  300 (437)
T TIGR00792       223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLG  300 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence            44555556666666666555555555554555 45566777777888999999999999999 89999999998888877


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch-hhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLD  228 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~R~  228 (597)
                      .+.+.+..                           .+...+++..++.|++.+...+...++++|..|.++.. ....++
T Consensus       301 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  353 (437)
T TIGR00792       301 YLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG  353 (437)
T ss_pred             HHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence            76665431                           23455666777889999999999999999998743211 011278


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw  258 (597)
                      ..++++++...+|..+++.+.|++.+..||
T Consensus       354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       354 LVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            899999999999999999999999887666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.03  E-value=1.4e-07  Score=101.59  Aligned_cols=337  Identities=14%  Similarity=0.105  Sum_probs=195.9

Q ss_pred             HHHHHHHHHHhhCCChH-HHHHHHHHH----HHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007580           89 SVNMVTFMFYVMHKSFA-DSSNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (597)
Q Consensus        89 ~~~l~~yl~~~~~~s~~-~a~~~~~~~----~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~  163 (597)
                      ..+...+.....+.+.. ..+......    .+...+..++-|.++|| +|||..+.+..+...+......+.       
T Consensus        41 ~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~-------  112 (463)
T KOG2816|consen   41 MTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQ-------  112 (463)
T ss_pred             hhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHH-------
Confidence            35556666666555433 233444444    46778888999999999 799999999988887777776664       


Q ss_pred             CCCCcccccccccCCCCCccchhHHHHHHHHHHHHH--hhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHH
Q 007580          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGF--GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG  241 (597)
Q Consensus       164 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~--g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg  241 (597)
                                            . +++++   +.++  +.+.......++++|....++      |...+++.+.....+
T Consensus       113 ----------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~  160 (463)
T KOG2816|consen  113 ----------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAG  160 (463)
T ss_pred             ----------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHH
Confidence                                  2 22222   3333  334566777888999999998      999999999999999


Q ss_pred             HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCC-CchhhHHHHHHHHHHhhhcccCcccccccc
Q 007580          242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG-SPLTRVAQVLVAAFRKRHAAFSSSELIGLY  320 (597)
Q Consensus       242 ~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  320 (597)
                      ..++|.+++++.+..|.-..|.+.++..++..+-.....++...++.+. ......              .+.+.   ..
T Consensus       161 ~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~--------------~~~~~---~~  223 (463)
T KOG2816|consen  161 LVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL--------------TPGSL---DS  223 (463)
T ss_pred             HhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc--------------CCCcc---cc
Confidence            9999999999999999999999999888877776666666654443322 110000              00000   00


Q ss_pred             ccCCCcccccCCcccccCCcchhhH-HHhhhhhcc--cCC-CCCC----cc-ccchhhhhhhHhHhhhhhHHHHHHHHHH
Q 007580          321 EVPGKHSAIKGSGKIAHTDDFRCLD-KAALELKED--VIN-PSPW----KL-CTVTQVEEVKTLVRLVPIPACTIMLNVI  391 (597)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~~~~~--~~~-~~~~----~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (597)
                      ++  ..+..+...+..+++..-.+- .+......+  +.. ..+.    +. +..++....+.+....          ..
T Consensus       224 ~~--~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~----------~~  291 (463)
T KOG2816|consen  224 SH--VADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSIL----------GI  291 (463)
T ss_pred             hh--hhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHH----------HH
Confidence            00  000001111111111111111 111111000  000 0000    00 0011111111110000          00


Q ss_pred             HhcchhhHHHHHhhhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHH
Q 007580          392 LTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ  471 (597)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~  471 (597)
                      ..+..-....     ..      .......+.+|++.-.+.+++.++..                       .. |++..
T Consensus       292 i~~l~~~~~l-----~~------~l~~~~~i~lGl~~~~~~~~~~af~~-----------------------~~-w~~~~  336 (463)
T KOG2816|consen  292 ISQLLLLPLL-----SS------ILGEKRLISLGLLSEFLQLLLFAFAT-----------------------ET-WMMFA  336 (463)
T ss_pred             HHHHHHHHHH-----HH------HHhhhhHhhHHHHHHHHHHHHHHHhc-----------------------cc-hhhhH
Confidence            0110000000     00      01111256778888888877777652                       22 34444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 007580          472 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG  529 (597)
Q Consensus       472 ~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g  529 (597)
                      .........+..|...+++..+..++.+|.+.++......+.+.+++.+.+.+...+-
T Consensus       337 ~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  337 AGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL  394 (463)
T ss_pred             HHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            4455555678889999999999999999999999999999999999999998766553

>PRK10133 L-fucose transporter; Provisional

Probab=99.01  E-value=1.8e-08  Score=108.91  Aligned_cols=160  Identities=10%  Similarity=0.009  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580           76 GNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (597)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~  154 (597)
                      +..++.....++...+++.|+ ++.+|+++.++++....+.++..++.+++|+++|| +|||+++..+.++..++..+..
T Consensus       265 l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~  343 (438)
T PRK10133        265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISA  343 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHH
Confidence            334555566666777888896 56789999999999999999999999999999999 8999999888777665554444


Q ss_pred             HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (597)
Q Consensus       155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~  234 (597)
                      +.                            .+. ..+....+.|+|.+.+.|...+...+.++++.       +.+.++.
T Consensus       344 ~~----------------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~  387 (438)
T PRK10133        344 FA----------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFI  387 (438)
T ss_pred             Hc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHH
Confidence            32                            111 22455678999999999999999999987643       3333333


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHH
Q 007580          235 YLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN  273 (597)
Q Consensus       235 ~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~  273 (597)
                      .. ..+|+.++|.+.|++.+..| -+..|++..+..+...
T Consensus       388 ~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        388 VM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             hH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            32 33678889999999999887 7888877666544433

>TIGR00896 CynX cyanate transporter

Probab=99.00  E-value=1.2e-08  Score=106.96  Aligned_cols=150  Identities=15%  Similarity=0.073  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc-chHHHHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYLAG  149 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GR~~~~~~~~~l~~~g  149 (597)
                      .+.+.+..++....++++..++|.|+++ .|.+..+++...+.+.++..++.++.|+++|| + +||+++.++.++..++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~  276 (355)
T TIGR00896       199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVG  276 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHH
Confidence            4444455556667778888899999865 79999999999999999999999999999999 7 5677777777777777


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC-CCchhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD  228 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~R~  228 (597)
                      ...+.+...                          ..  .. ....+.|++.+...+...+.+.+..++ ++      ++
T Consensus       277 ~~~~~~~~~--------------------------~~--~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~------~g  321 (355)
T TIGR00896       277 LCGLLFAPM--------------------------HG--LW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ------AA  321 (355)
T ss_pred             HHHHHHhhh--------------------------hH--HH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH------HH
Confidence            666654411                          11  11 134578999999988887777766554 34      67


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~g  257 (597)
                      ..+++.+...++|..++|.+.|++.++.|
T Consensus       322 ~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       322 ALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888888888999999999999998776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.00  E-value=3.2e-08  Score=108.63  Aligned_cols=167  Identities=11%  Similarity=0.043  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 007580           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (597)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~  155 (597)
                      +..++..+....+...+|.+..+.+|.+....|++.+.+.+|..++.++.+++.++ +++++.+..+.+++.++++.+++
T Consensus       225 ~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal  303 (524)
T PF05977_consen  225 LRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLAL  303 (524)
T ss_pred             HHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhc
Confidence            33344444444555667888889999999999999999999999999999999999 89999999998888888877777


Q ss_pred             hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007580          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (597)
Q Consensus       156 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~  235 (597)
                      +                            .+.+..++..++.|++.........+.+-...|++.      ||+.++++.
T Consensus       304 ~----------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~  349 (524)
T PF05977_consen  304 S----------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQ  349 (524)
T ss_pred             c----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHH
Confidence            6                            466777788889999999988888999999999999      999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580          236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       236 ~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      .....+..+|..+.|++.+..|-+..+.+.++..+++.++..
T Consensus       350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988877766555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.00  E-value=4.3e-08  Score=103.50  Aligned_cols=156  Identities=12%  Similarity=0.055  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 007580           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA  157 (597)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~  157 (597)
                      ..+.....+....+.+.|+.+++|.++.+++.......++..++.+++|+++|| +|||+.+.++.++..++..++....
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  293 (385)
T TIGR00710       215 YGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAVLLEITA  293 (385)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444556666677888888999999999999999999999999999999999 8999999888877777776665542


Q ss_pred             hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007580          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS  237 (597)
Q Consensus       158 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~  237 (597)
                      ...                       ......++....+.|++.+...+.......|.+| ++      |++..++++..
T Consensus       294 ~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~  343 (385)
T TIGR00710       294 ILG-----------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTL  343 (385)
T ss_pred             Hhc-----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHH
Confidence            100                       0123445556677889999888888888888876 45      78889887776


Q ss_pred             HHHHHHHHHHHHHHhhhccchHHHHHH
Q 007580          238 VTVGAIVAFTLVVYIQMEHGWGSAFGA  264 (597)
Q Consensus       238 ~~lg~~l~p~i~~~i~~~~gw~~~f~i  264 (597)
                      ...++.+.+.+.+.+.+..+|...+..
T Consensus       344 ~~~~g~i~~~~~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       344 RLVLGAIVGYLVSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHhccccChHHHHHHH
Confidence            655444444445566555555554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10054 putative transporter; Provisional

Probab=99.00  E-value=1.1e-08  Score=109.08  Aligned_cols=169  Identities=12%  Similarity=-0.017  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580           74 IFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (597)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~  151 (597)
                      ..+..++..+.+.....+++.|+...  .+.+....+.....+........++.|++.|| +|||+.+..+.++..++..
T Consensus       211 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~  289 (395)
T PRK10054        211 FTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFVIGLV  289 (395)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHHHHHH
Confidence            33444555555444555666776543  34455566677777777777777888999999 8999999989888888777


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (597)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~  231 (597)
                      ...++.                           .+...++++..+.++|.+...|...+.+.+..|++.      |++++
T Consensus       290 ~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~  336 (395)
T PRK10054        290 GFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYF  336 (395)
T ss_pred             HHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehH
Confidence            666431                           244556677788999998888888999999999888      88888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      +..+ ...+|..+||.++|++.|+.|....|++.+....+++++.+
T Consensus       337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            7654 56689999999999999999988888876665555544433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.00  E-value=5.9e-08  Score=103.51  Aligned_cols=164  Identities=10%  Similarity=-0.020  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH-H
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA-G  149 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~-g  149 (597)
                      ++..++..++.....++...++++++.+++|++..+.+.....+.++..++.++.|++.|| .+|+ .+..+.++..+ +
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~~-~l~~~~~~~~~~~  295 (394)
T PRK10213        218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVKL-ALAGAPLVLAVSA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchh-HHHHHHHHHHHHH
Confidence            3333334444445555666666555567889999999999999999999999999999999 5544 44444333333 3


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ..+....                            .+...+.+..++.|++.+...+...+++.+..|+ +      +++
T Consensus       296 ~~l~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~  340 (394)
T PRK10213        296 LVLTLWG----------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEK  340 (394)
T ss_pred             HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHH
Confidence            3333222                            2345666677888999999999889888888873 3      455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~  271 (597)
                      ..+++....++|..+||.++|++.+..|++..+...+.+..+
T Consensus       341 ~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        341 AGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence            666667777899999999999999999998888776654433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.00  E-value=1.1e-08  Score=112.64  Aligned_cols=154  Identities=14%  Similarity=0.062  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .+....+..++..+..++...+++.|+++.+|.++.+++.....+.++..++.+++|++.|| +|||+.+..+.++..++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~  338 (495)
T PRK14995        260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALS  338 (495)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHH
Confidence            34455566666677777888889999999999999999999999999999999999999999 89999998888888777


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      .+++.....      .                   .+....++..++.|+|.|...+.....+.+..|+++      ++.
T Consensus       339 ~~~l~~~~~------~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~  387 (495)
T PRK14995        339 FYGLAMTDF------S-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAA  387 (495)
T ss_pred             HHHHHHhcC------C-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cch
Confidence            766554311      0                   233445667788999999998888888889999988      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQME  255 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~  255 (597)
                      +.++++...++|..+|+.+.+.+.++
T Consensus       388 ~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        388 AGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.98  E-value=1.8e-08  Score=122.11  Aligned_cols=162  Identities=10%  Similarity=-0.010  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~  150 (597)
                      +..++..++.....+.+..+++.|+.+.+|++.. ..+++...+.++..++.++.|+++|| +++++++.++.++..++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~  313 (1146)
T PRK08633        235 WLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSL  313 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHH
Confidence            3333334444445566677889999999999998 89999999999999999999999999 899998888887777776


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (597)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~  230 (597)
                      +++.+.                            .+...+++..++.|++.+...+...+++.+.+|++.      |+++
T Consensus       314 ~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~  359 (1146)
T PRK08633        314 FLLPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKV  359 (1146)
T ss_pred             HHHHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhh
Confidence            666654                            345566777888999999999999999999999999      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHH
Q 007580          231 FNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA  268 (597)
Q Consensus       231 ~~~~~~~~~lg~~l~p~i~~~i~~-~~gw~~~f~i~~~~  268 (597)
                      ++++++..++|..+++.+++.+.. ..++...|++.+.+
T Consensus       360 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        360 LAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999999999999888888776654 23555566554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.97  E-value=2.1e-08  Score=107.17  Aligned_cols=152  Identities=11%  Similarity=0.019  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007580           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (597)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  166 (597)
                      ....++|.|+++..+ ++.+.++......++...+....+++.|+.++.++.+..+.++..++..+++.+          
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------  294 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------  294 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----------
Confidence            344567888876655 667777777776665554444445555543676677777777777777666554          


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 007580          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (597)
Q Consensus       167 ~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p  246 (597)
                                        ++...+++...+.++|.+...|...+++.+..|+++      |++.+++++...++|..+||
T Consensus       295 ------------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~  350 (400)
T PRK11646        295 ------------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGY  350 (400)
T ss_pred             ------------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcc
Confidence                              344455566677888888888899999999999999      99999999999999999999


Q ss_pred             HHHHHhhhcc---c-hHHHHHHHHHHHHHHH
Q 007580          247 TLVVYIQMEH---G-WGSAFGALAIAMGISN  273 (597)
Q Consensus       247 ~i~~~i~~~~---g-w~~~f~i~~~~~~~~~  273 (597)
                      .++|++.++.   + ....+++.++..++..
T Consensus       351 ~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  381 (400)
T PRK11646        351 IGGGWLFDLGKALNQPELPWMMLGIIGLITL  381 (400)
T ss_pred             cchHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            9999998864   2 2444444444444333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.97  E-value=2e-07  Score=103.33  Aligned_cols=206  Identities=13%  Similarity=0.101  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~  151 (597)
                      .++.+..+...+. .++.....+-+.+.+++++.+.|++.+.|-++..+...+..+.+-| .-|-+.+-++.+++.+|.+
T Consensus       100 ~~l~~~~~~q~l~-~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsl  177 (735)
T KOG3626|consen  100 VLLSLAAFAQGLY-VGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSL  177 (735)
T ss_pred             HHHHHHHHHHHhh-hhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHH
Confidence            3344444555555 4777888889999999999999999999999999999999999998 5788888999999999999


Q ss_pred             HHHHhhhccc-cC--------CCC--------Cccccc----ccccCCCC--Cccch-hHHHHHHHHHHHHHhhhchhhh
Q 007580          152 GITLCATMKV-FM--------PNQ--------DNCDRI----SQLLGSCE--PAKSW-QMLYLYTVLYITGFGAAGIRPC  207 (597)
Q Consensus       152 ~~~~~~~~~~-~~--------~~~--------~~c~~~----~~~~~~~~--~~~~~-~~~~l~~~~~l~g~g~g~~~~~  207 (597)
                      ++++...+.. ..        +.+        +.|++.    ++..+.|.  ..... -+.+++++.++.|+|...+++.
T Consensus       178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl  257 (735)
T KOG3626|consen  178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL  257 (735)
T ss_pred             HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence            9998643320 00        000        001100    01112232  22222 2347788999999999999999


Q ss_pred             hhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc------------------c-chHHHHHHHHHH
Q 007580          208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME------------------H-GWGSAFGALAIA  268 (597)
Q Consensus       208 ~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~------------------~-gw~~~f~i~~~~  268 (597)
                      ..+++=|-...++      -...+++.+....+|+++|.++++++...                  . .|+.+|.+.+.+
T Consensus       258 GisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~  331 (735)
T KOG3626|consen  258 GISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGAL  331 (735)
T ss_pred             CCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHH
Confidence            9999988888887      78899999999999999999999876421                  2 288899998888


Q ss_pred             HHHHHHHHHHhcCcccc
Q 007580          269 MGISNMLFFIGTPLYRH  285 (597)
Q Consensus       269 ~~~~~~~~~~~~~~~~~  285 (597)
                      .++..+.++++.+.+++
T Consensus       332 ~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  332 LLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHHHHHhCcccCcc
Confidence            87777776666655544

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.96  E-value=1.5e-08  Score=104.47  Aligned_cols=172  Identities=13%  Similarity=0.086  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .+...++..++.+=+-..+......|...++|++..+...+...-.+..+++.+++|+|.|| +|-|+++.++.+++.+.
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~  331 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIA  331 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHH
Confidence            45555556666666666777778899999999999999988888899999999999999999 89999999998887765


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      .+..-+.                            ....-+.+.-.+.|+..|+.++..-++.++..|+++      -++
T Consensus       332 ~~~~~~~----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~  377 (438)
T COG2270         332 ALYLIFL----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR  377 (438)
T ss_pred             HHHHHHc----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence            5544433                            122334455568899999999999999999999999      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF  276 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~  276 (597)
                      +|++|++....+..+||.+.+.+.+.+| -|.++....++.+++++++
T Consensus       378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            9999999999999999999999887654 6777766555555555543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.94  E-value=6.7e-08  Score=103.81  Aligned_cols=184  Identities=13%  Similarity=-0.004  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      ..|.+.+..++..-.+.++..++|.|+++.+.  ............+...+..+++|+|||| +||++++.++.++..++
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~  329 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIF  329 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHH
Confidence            35777777777777777787789999887663  3333333444567888899999999999 89999999888777666


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCc--------
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK--------  221 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~--------  221 (597)
                      ...+.+..      |.                ....+...+.+..+...++.|.-...+..++.+.||++..        
T Consensus       330 ~~~~~l~l------p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~  387 (462)
T PRK15034        330 SALLFLTL------PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG  387 (462)
T ss_pred             HHHHHHHh------cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence            54433321      10                0013455566655555566666666677777777774100        


Q ss_pred             -------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Q 007580          222 -------DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       222 -------~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                             ..++.-+...++......+|+.+-|.+-|+..+.. ++...|++..+..+++.++.+.
T Consensus       388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence                   01112567777888888898989998777766654 5888888888777666655544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.88  E-value=4.9e-08  Score=118.32  Aligned_cols=184  Identities=6%  Similarity=-0.173  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .++...+..++..+..+++..++|.|+.+.+|.+...++++.+.+.++..++.++.|+++|+ .++++.+..+.++..++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~~  304 (1140)
T PRK06814        226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGLF  304 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHHH
Confidence            34455555555566667777889999999999999999999999999999999999999998 57666666555555544


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      .+.+.+.... ...+..+.+.      ..+-. ...+.+.++++.++.|++.+...+...+++.+.+|++.      |++
T Consensus       305 ~~~l~~~~~~-~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~  370 (1140)
T PRK06814        305 GLDLAFASSS-VPAEPAQLKS------ILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RAR  370 (1140)
T ss_pred             HHHHHhcccc-cccccccccc------hhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------cee
Confidence            4433332000 0000000000      00000 00234566777888999999999999999999999999      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA  268 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~-~~gw~~~f~i~~~~  268 (597)
                      .+++++....+|..+++++.+.+.+ ..++.+.|++.+++
T Consensus       371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999999999999999999999874 45667666655543

>PRK09848 glucuronide transporter; Provisional

Probab=98.87  E-value=3.8e-08  Score=106.80  Aligned_cols=162  Identities=14%  Similarity=0.122  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .++...+..++...+++......+.|+++.+|.+....++......++..++.++.++++|| +|+|+++.++.++..++
T Consensus       229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~  307 (448)
T PRK09848        229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCG  307 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence            34555555666666666666666777777888776655555554456778889999999999 89999999999888888


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh-hhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD  228 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~R~  228 (597)
                      .+++.+..       .                   .+.+.+++..++.|+|.+...+...++.+|..|.++.+. ...++
T Consensus       308 ~~~~~~~~-------~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G  361 (448)
T PRK09848        308 YLLFFWVS-------V-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG  361 (448)
T ss_pred             HHHHHHcC-------c-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh
Confidence            77766431       1                   345566677788999999999999999999988654211 11258


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw  258 (597)
                      ..++.+++...+|..+|+.+.+.+.+..|+
T Consensus       362 ~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        362 LTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            888999999999999999999887665554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.87  E-value=1.5e-07  Score=99.36  Aligned_cols=165  Identities=10%  Similarity=-0.028  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchH---HHHHH-HHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAI-FTTI  145 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~---~~~~~-~~~l  145 (597)
                      .++.+.+..++....+|++..|+|.|+++ .|++.. ++.......+...   +..++++|| +.||   +.... ..++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~-~~r~~~r~~~~~~~~~~  266 (368)
T TIGR00903       193 DLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDR-VARAGLRSIYIRAAALL  266 (368)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHH-hhhhhhHHHHHHHHHHH
Confidence            45777788888899999999999999964 678764 4544444444433   445888888 5543   33332 3333


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      ..+.....+..                            .+....++...+.+++.....+...++.+|.+|++.     
T Consensus       267 ~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~-----  313 (368)
T TIGR00903       267 IAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL-----  313 (368)
T ss_pred             HHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh-----
Confidence            23222222222                            112233444456667777777888899999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~  276 (597)
                       |+++.++.+...++|+..+|.+.+.+..  |-+..|.+.++..+++.+..
T Consensus       314 -rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       314 -HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             -cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999988773  66667776666555554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00898 2A0119 cation transport protein

Probab=98.86  E-value=5.1e-08  Score=107.44  Aligned_cols=129  Identities=15%  Similarity=0.061  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHH
Q 007580          113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT  192 (597)
Q Consensus       113 ~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~  192 (597)
                      ...+...++.+++++++|| +|||+++.++.++..++.+++.+...                          ......++
T Consensus       363 ~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~~  415 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV--------------------------DLYFLRTA  415 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC--------------------------CchHHHHH
Confidence            3456667788899999999 89999999998887777766655411                          11133444


Q ss_pred             HHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 007580          193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (597)
Q Consensus       193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~  272 (597)
                      ..++.+++.++..+....+.+|.+|++.      |++++++.+....+|..++|.+.+ +. ..++..++++.+...+++
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~  487 (505)
T TIGR00898       416 LAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLA  487 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHH
Confidence            4556667777778888999999999999      999999999999999999999988 43 356677777766665555


Q ss_pred             HHHH
Q 007580          273 NMLF  276 (597)
Q Consensus       273 ~~~~  276 (597)
                      .++.
T Consensus       488 ~~~~  491 (505)
T TIGR00898       488 GILT  491 (505)
T ss_pred             HHHH
Confidence            4443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.82  E-value=1.1e-07  Score=99.66  Aligned_cols=145  Identities=10%  Similarity=0.037  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH-HHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~  148 (597)
                      ..+.+++..++..++++....+++.|+.+ +|++..+.+.+..... ++..++.+++|+++|| +|||+.+.++.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Confidence            35555555666778888888999999987 9999999988777655 5678899999999999 8999999888887776


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                      +..+..+......                +-+ -+..+...++...++.+++.+...+...+++.+.+|++.      |+
T Consensus       288 ~~~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g  344 (356)
T TIGR00901       288 TNAGFVWLASNGH----------------HDG-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA  344 (356)
T ss_pred             HHHHHHHHHhcCc----------------ccc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence            6555443211000                000 000133556677788899999999999999999999999      99


Q ss_pred             hHHHHHHHHHH
Q 007580          229 RFFNFFYLSVT  239 (597)
Q Consensus       229 ~~~~~~~~~~~  239 (597)
                      +.+++++...+
T Consensus       345 ~~~g~~~~~~~  355 (356)
T TIGR00901       345 TQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHh
Confidence            99999877654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.82  E-value=3.4e-07  Score=97.63  Aligned_cols=158  Identities=6%  Similarity=-0.060  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 007580           85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (597)
Q Consensus        85 ~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  164 (597)
                      .......++.|+.+.+|.++.+.+.....+.++..++.++.+++.|| +++++++..+.++ .+....+...        
T Consensus       221 ~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~--------  290 (393)
T PRK11195        221 GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ--------  290 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH--------
Confidence            34444556778888899999999999999999999999999999998 7999888777432 2222222222        


Q ss_pred             CCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 007580          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (597)
Q Consensus       165 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l  244 (597)
                                          .+....++..++.|++.+...+...+.+.+..|++.     ++++.+++.++..++|..+
T Consensus       291 --------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~  345 (393)
T PRK11195        291 --------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLL  345 (393)
T ss_pred             --------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHH
Confidence                                344555667778899988888888888877644331     1688999999999999999


Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       245 ~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      +..+.+.+ +..|-++.+.+.+...++...+.+.
T Consensus       346 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK11195        346 MLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALL  378 (393)
T ss_pred             HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            99998866 4566666665555444444444333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.80  E-value=4.6e-07  Score=91.84  Aligned_cols=166  Identities=14%  Similarity=0.096  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      ..|.+.+..-+.++.+|.+..|+|.++. +.|+|..++++.++...+......++.-++++|.--+|+..+...+.+.+|
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            4566666667788899999999999886 579999999999999999999999999999998556888888888888888


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ...+.+.       |.                   ++. .+.  .+++|+|.|+.++....++.+..++.+.     -++
T Consensus       288 ~~G~~~~-------P~-------------------~~~-~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~  333 (395)
T COG2807         288 LVGLLLA-------PG-------------------QLP-ILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAA  333 (395)
T ss_pred             HHHHHHh-------hh-------------------hHH-HHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHH
Confidence            8888766       21                   222 222  4789999999999999999998865441     345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMG  270 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~-gw~~~f~i~~~~~~  270 (597)
                      ..++-+-...+-+..||.+.|++.|.. +|+......+...+
T Consensus       334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i  375 (395)
T COG2807         334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL  375 (395)
T ss_pred             HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence            555556666677888999999999975 58877665554433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.80  E-value=6e-10  Score=122.51  Aligned_cols=205  Identities=14%  Similarity=0.086  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 007580           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (597)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~  153 (597)
                      +++..+++ +..+++......-+.+.|+++++++|++.+.|-++..+..++..++.+| .-|-|.+.++.++..+|.+++
T Consensus         8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~   85 (539)
T PF03137_consen    8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLF   85 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHH
Confidence            34444455 6667777777888999999999999999999999999999999999998 578888889999999999999


Q ss_pred             HHhhhccc-cCCC------------CCccc-----ccccccCC---CCCccch-hHHHHHHHHHHHHHhhhchhhhhhhh
Q 007580          154 TLCATMKV-FMPN------------QDNCD-----RISQLLGS---CEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSF  211 (597)
Q Consensus       154 ~~~~~~~~-~~~~------------~~~c~-----~~~~~~~~---~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~  211 (597)
                      ++...... ..+.            .+.|.     ..+.+...   +...... -+..++++.++.|+|....++...++
T Consensus        86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY  165 (539)
T PF03137_consen   86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY  165 (539)
T ss_dssp             ------------------------------------------------------------------SSS-----------
T ss_pred             hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence            98754421 1110            01120     00000001   1122222 24678899999999999999999999


Q ss_pred             hhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---------------------cc-hHHHHHHHHHHH
Q 007580          212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------------------HG-WGSAFGALAIAM  269 (597)
Q Consensus       212 ~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~---------------------~g-w~~~f~i~~~~~  269 (597)
                      +=|..++++      -...+++++....+|+++|.++++.+...                     .| |+.+|.+.+++.
T Consensus       166 iDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~  239 (539)
T PF03137_consen  166 IDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL  239 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            999999998      78899999999999999999998865321                     23 888888888777


Q ss_pred             HHHHHHHHHhcCccccc
Q 007580          270 GISNMLFFIGTPLYRHR  286 (597)
Q Consensus       270 ~~~~~~~~~~~~~~~~~  286 (597)
                      ++..+.++.+.|++++.
T Consensus       240 ~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  240 FLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHcCCccCCCc
Confidence            66665555555555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.78  E-value=1.1e-07  Score=95.92  Aligned_cols=172  Identities=11%  Similarity=0.091  Sum_probs=113.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhhCCChHHH--HHHHHHHHHHHHHHhhhhHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTF-----------------MFYVMHKSFADS--SNAVNNFLGISQASSVLGGF  127 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~y-----------------l~~~~~~s~~~a--~~~~~~~~~~~~~~~~~~G~  127 (597)
                      ..+..++++.+.|.+++.+|+..-.....                 +.-..+-.....  -.-+.+-.+.-..|.++.++
T Consensus       324 lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~  403 (528)
T KOG0253|consen  324 LRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGV  403 (528)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHH
Confidence            34456777788889999999876432211                 111111111111  11222345677889999999


Q ss_pred             HhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhh
Q 007580          128 LADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC  207 (597)
Q Consensus       128 lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~  207 (597)
                      +.|| +|||+++..+.+++.+.+.++..+..                       ++ .-..+++.+|+++    .+...+
T Consensus       404 iver-lGRKkTMal~l~~f~iflfll~~c~~-----------------------rn-~~tvllf~arafi----sg~fqv  454 (528)
T KOG0253|consen  404 IVER-LGRKKTMALSLILFGIFLFLLTTCKT-----------------------RN-AYTVLLFTARAFI----SGAFQV  454 (528)
T ss_pred             HHHH-hcchhHHHHHHHHHHHHHHHHHHhcC-----------------------cc-hhHHHHHHHHHHH----hchheE
Confidence            9999 89999999999999988888776522                       11 1224555666655    444556


Q ss_pred             hhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 007580          208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (597)
Q Consensus       208 ~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~  275 (597)
                      ...+..|.+|...      |+.+.|.-.....+|+++.|.++  +...-+-..+..+...+.+++.+.
T Consensus       455 aYvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIa  514 (528)
T KOG0253|consen  455 AYVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIA  514 (528)
T ss_pred             EEEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHH
Confidence            7888999999999      99999999999999999999998  333223333444444444444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.78  E-value=2.8e-07  Score=99.37  Aligned_cols=161  Identities=14%  Similarity=0.099  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      ....+++..++..++........+.|.+..+|.+ ...+.......++..++.++.++++|| +|+|+++..+.++..++
T Consensus       226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~~  303 (428)
T PF13347_consen  226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAALG  303 (428)
T ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHHH
Confidence            4566677777777777777777777788778877 456677778889999999999999999 89999999999999998


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch-hhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLD  228 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~R~  228 (597)
                      .++..+...                          .+...+++...+.|++.+...+...++++|..+.++.+ .++..+
T Consensus       304 ~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g  357 (428)
T PF13347_consen  304 FLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG  357 (428)
T ss_pred             HHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH
Confidence            888877621                          36778888889999999999999999999999865422 112257


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw  258 (597)
                      ..++.+.+...++..+++.+.+.+.+..|+
T Consensus       358 ~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  358 MYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            888889999999999999999988665444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.77  E-value=8.2e-08  Score=99.76  Aligned_cols=141  Identities=19%  Similarity=0.232  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (597)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~  152 (597)
                      ++...++..+.++....+++.|+.+++|.+ ..+.+...+...+...++.++.|+++|| +|+++...+......++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHH
Confidence            444444455566678888899989999999 7899999999999999999999999999 89988888877777666666


Q ss_pred             HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHH
Q 007580          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (597)
Q Consensus       153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~  232 (597)
                      +.+....                         .+....++..++.|++.+...+...+++.|.+|+++      |++..+
T Consensus       290 ~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g  338 (352)
T PF07690_consen  290 LLLLPFS-------------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFG  338 (352)
T ss_dssp             HCCSHHH-------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHH
T ss_pred             HHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence            6554220                         234566667788999999999999999999999999      999999


Q ss_pred             HHHHHHHHHHHHHH
Q 007580          233 FFYLSVTVGAIVAF  246 (597)
Q Consensus       233 ~~~~~~~lg~~l~p  246 (597)
                      +++...++|..+||
T Consensus       339 ~~~~~~~~~~~igP  352 (352)
T PF07690_consen  339 LFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC
Confidence            99999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.77  E-value=6.3e-07  Score=96.14  Aligned_cols=193  Identities=15%  Similarity=0.080  Sum_probs=133.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~  146 (597)
                      ..+.....+...+...+...-......+.+-++-|++..++.+....-.....+..+++.++.|| +|||+.++++..+.
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~  345 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLM  345 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHH
Confidence            34456666666666666544334444566667789999999999999999999999999999999 89999999999988


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhh-chhhhhhhhhhccCCCCCchhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g-~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      .+..+++...........                   ..-....+++.++..++.+ ++.|...-+.+|+||++.     
T Consensus       346 ~~~~~~~~~~~~l~~~~~-------------------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~-----  401 (485)
T KOG0569|consen  346 AVALLLMSIALFLSNSFG-------------------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA-----  401 (485)
T ss_pred             HHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc-----
Confidence            888887776643210000                   0000122344444444433 446778888999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~  286 (597)
                       |..++++-.....+...+-...--.+.+..|- +.|.+..+..++..+..+...|+.+.+
T Consensus       402 -R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  402 -RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence             99999997777766666665555666666665 566666666666666667767766554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.75  E-value=1.2e-06  Score=92.52  Aligned_cols=144  Identities=10%  Similarity=-0.081  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (597)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~  154 (597)
                      ++..++...+.+.+..+.+.++.+.+|+++.+.+.......++..++.+++|+++|| +|||+++.++.++..+..+...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~  278 (377)
T PRK11102        200 MLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGIWLV  278 (377)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555566666778888899999999999999999999999999999999 8999999888776544333222


Q ss_pred             HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (597)
Q Consensus       155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~  234 (597)
                      ......                        .+...+.++..+.+.+.+...+.....+.|..| +.      |++..+++
T Consensus       279 ~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~  327 (377)
T PRK11102        279 VSALLD------------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLA  327 (377)
T ss_pred             HHHHHh------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHH
Confidence            211000                        123333444444455555555566666777766 55      77777775


Q ss_pred             HHH-HHHHHHHHHHHHH
Q 007580          235 YLS-VTVGAIVAFTLVV  250 (597)
Q Consensus       235 ~~~-~~lg~~l~p~i~~  250 (597)
                      +.. ..+|..+++.+++
T Consensus       328 ~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        328 GTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            443 4566667766554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.2e-07  Score=103.51  Aligned_cols=176  Identities=14%  Similarity=0.102  Sum_probs=145.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccc--hHHHHHHHHHHH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIY  146 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G--R~~~~~~~~~l~  146 (597)
                      +.++.+.+...+..++++.....++.|.. ..+.+..+++..++...+...++.++.|+++|+ ..  ++.+..++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHH
Confidence            46777777788888898888888888887 899999999999999999999999999999998 56  334444555555


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .++...++++                            .++..++..-.+.|++.|......+.++.|..+.++      
T Consensus       376 gl~~~~~p~~----------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------  421 (509)
T KOG2504|consen  376 GLARLFLPFA----------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------  421 (509)
T ss_pred             HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence            5555445444                            456677777788999999999888899999999999      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT  280 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~~  280 (597)
                      -..++++......++..+||++.|++.|..| |...|+..++..+++..++++..
T Consensus       422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999999999999887 99999998888877776655543

>PRK11043 putative transporter; Provisional

Probab=98.75  E-value=1.4e-06  Score=93.02  Aligned_cols=147  Identities=12%  Similarity=-0.013  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580           82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV  161 (597)
Q Consensus        82 ~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~  161 (597)
                      ...++....+++.|++ ++|++..+.+.....+.++..++.++++++.|| +|||+.+....++..++.+.+.+..... 
T Consensus       216 ~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  292 (401)
T PRK11043        216 SAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLLS-  292 (401)
T ss_pred             HHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3444555566777765 589999999988777888888999999999999 8999987666655555444333221100 


Q ss_pred             cCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHH
Q 007580          162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG  241 (597)
Q Consensus       162 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg  241 (597)
                        +                    .+...+++...+.|++.+...+...+...|..| ++      |++..++++.....+
T Consensus       293 --~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~  343 (401)
T PRK11043        293 --H--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGL  343 (401)
T ss_pred             --c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHH
Confidence              0                    233445556677888888888888888778776 45      899999998888888


Q ss_pred             HHHHHHHHHHhhhccchHH
Q 007580          242 AIVAFTLVVYIQMEHGWGS  260 (597)
Q Consensus       242 ~~l~p~i~~~i~~~~gw~~  260 (597)
                      +.+++.+.+.+.+......
T Consensus       344 ~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        344 CFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHccCCChhHH
Confidence            8888888888876543443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.74  E-value=1e-06  Score=93.68  Aligned_cols=69  Identities=13%  Similarity=0.045  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 007580           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (597)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~  156 (597)
                      .+..+.+.|+.+++|++..+.+.....+.++..++.++.|+++|| +|||+++.++.++..++.+.+.+.
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455677888899999999988888899999999999999999 899999999988888877777665

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.72  E-value=7.7e-07  Score=97.32  Aligned_cols=165  Identities=13%  Similarity=-0.008  Sum_probs=115.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~  148 (597)
                      |.++.+++..++..++.+......+.|.+..++ +....+.......++..++.++.++++|| +|||+++.++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence            456666666676667666555554444443333 45555666666668888999999999999 8999999988887676


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch-hhhhh
Q 007580          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL  227 (597)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~R  227 (597)
                      +.+...+....    ++                   .+...+++..++.|++.+...+...++++|..|.++.. .++..
T Consensus       309 ~~~~~~~~~~~----~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~  365 (473)
T PRK10429        309 SCGVLLLMGLA----AP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE  365 (473)
T ss_pred             HHHHHHHHhcc----Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence            66555432110    11                   34456666777889999999999999999998744211 11114


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw  258 (597)
                      +..+++..+..-+|..+++.+.|++.+..|+
T Consensus       366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5678889999999999999999998765554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.70  E-value=2.3e-06  Score=87.44  Aligned_cols=154  Identities=16%  Similarity=0.069  Sum_probs=109.0

Q ss_pred             HHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 007580           96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL  175 (597)
Q Consensus        96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~  175 (597)
                      +-++.|++..+.+.+...-.....+..++.|.++|| +|||+..++.++++.+..+.--.                    
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~--------------------  118 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHS--------------------  118 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhc--------------------
Confidence            446789999999988888788888888999999999 89999999999999887754332                    


Q ss_pred             cCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhh-hccCCCCCchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhh
Q 007580          176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG-ADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQ  253 (597)
Q Consensus       176 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~-ad~~~~~~~~~~~~R~~~~~~~~-~~~~lg~~l~p~i~~~i~  253 (597)
                               +++..++++|++-|++......+-.+-. .|.-..+-+++  ..+.-|+... +.+.+-++++..++.++.
T Consensus       119 ---------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~  187 (354)
T PF05631_consen  119 ---------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLA  187 (354)
T ss_pred             ---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence                     4678999999999999999988877654 33322221211  1444444433 334445556666666776


Q ss_pred             hccc--hHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          254 MEHG--WGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       254 ~~~g--w~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      +..+  -..+|....+..+++.++....++
T Consensus       188 ~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~  217 (354)
T PF05631_consen  188 DWFGFGPVAPFDAAIVLLAVAAVLILKTWP  217 (354)
T ss_pred             HHhCCCCcchHHHHHHHHHHHHHHHHhccc
Confidence            6554  478888877777666655544443

>PRK09669 putative symporter YagG; Provisional

Probab=98.69  E-value=6.9e-07  Score=96.83  Aligned_cols=159  Identities=11%  Similarity=0.009  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~  151 (597)
                      +.+++..++...+.... ..+..|..+..--+....+.......+...++.+++++++|| +|||+.+.++.++..++..
T Consensus       232 ~~l~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~  309 (444)
T PRK09669        232 RIMFIFNVVLLTAVVTR-GGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSA  309 (444)
T ss_pred             HHHHHHHHHHHHHHHHH-hhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHH
Confidence            33334444444443322 233344433322233334455556667778888999999999 8999999888766554333


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCch-hhhhhhhH
Q 007580          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRF  230 (597)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~R~~~  230 (597)
                      ...+.       ++                   .+...+++..++.|++.++..+...++++|..|.++.+ .+...+..
T Consensus       310 ~~~~~-------~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~  363 (444)
T PRK09669        310 LIFFI-------PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLV  363 (444)
T ss_pred             HHHHh-------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHH
Confidence            22221       11                   35556777778899999999999999999999844321 11124667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (597)
Q Consensus       231 ~~~~~~~~~lg~~l~p~i~~~i~~~~gw  258 (597)
                      ++.+.+...+|.++|+.++|++.+..|+
T Consensus       364 ~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        364 FSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8889999999999999999998776665

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.66  E-value=1.2e-06  Score=93.88  Aligned_cols=161  Identities=9%  Similarity=-0.045  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~  150 (597)
                      +...+..|+......++.++++.|+.+. .+.+...++...+.+.....++.+++|+++|| +++|+++.++.++..+..
T Consensus       235 ~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~~  313 (410)
T TIGR00885       235 REGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMALC  313 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHH
Confidence            3344445555555556778889998653 24555556667777778899999999999999 899999888887777766


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (597)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~  230 (597)
                      ++....                            .+. ..+....+.|++.+.++|...+...+..+++.      +...
T Consensus       314 ll~~~~----------------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s  358 (410)
T TIGR00885       314 LGSIFA----------------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGA  358 (410)
T ss_pred             HHHHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhH
Confidence            666654                            121 23466678889999999999999999998765      3222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcc------chHHHHHHHHHHHH
Q 007580          231 FNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMG  270 (597)
Q Consensus       231 ~~~~~~~~~lg~~l~p~i~~~i~~~~------gw~~~f~i~~~~~~  270 (597)
                      . ....+ .+|+++.|.+.|++.|..      +.+..|.++.++.+
T Consensus       359 ~-~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       359 A-GLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             H-HHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            2 22222 399999999999999954      47788887665443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.64  E-value=5.6e-07  Score=97.27  Aligned_cols=178  Identities=13%  Similarity=0.088  Sum_probs=120.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccc-------hHHHH-H
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-------RYWTI-A  140 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G-------R~~~~-~  140 (597)
                      ..+|.+++..++..++++.+..++|.|+.+.+|++..+.|+..++-.+...+..+++|.++|+..-       +||.+ .
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            478999999999999999999999999999999999999999999999999999999999998422       12222 2


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 007580          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (597)
Q Consensus       141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~  220 (597)
                      ++...-.++++.+++.           .|+          .. ......+.++..+.|+..++..-+    ..|..| +.
T Consensus       338 i~~~~~ai~l~~l~~~-----------~~~----------~~-~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~ap-q~  390 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFT-----------SDE----------HR-LLAVILLTIAIGLSGFNISGFYKN----HQDIAP-QH  390 (466)
T ss_pred             HHHHHHHHHHHeeeec-----------CCC----------cc-hHHHHHHHHHHHHcccchhhhHhh----hhhccc-hH
Confidence            2222222222222222           111          00 001112222222223322222221    112233 33


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---cchHHHHHHHHHHHHHHHHHHHHh
Q 007580          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFIG  279 (597)
Q Consensus       221 ~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~---~gw~~~f~i~~~~~~~~~~~~~~~  279 (597)
                            -+..+++.+...++.+.++|.+.+.+..+   ..|++.|.+.+++.+++.+++.++
T Consensus       391 ------a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  391 ------AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence                  58899999999999999999999999842   379999999999888877666554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.64  E-value=1.3e-06  Score=95.56  Aligned_cols=188  Identities=11%  Similarity=0.090  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH----HHHHHHHHHHHHHHHhhhhH----HHhhcccchHHH--
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLGG----FLADAYLGRYWT--  138 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~----a~~~~~~~~~~~~~~~~~~G----~lsD~~~GR~~~--  138 (597)
                      +.++.+++..++..+.+....+.++.|..+..+.+...    .++..+...+...+..++..    ++.||..+.+..  
T Consensus       272 ~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k  351 (475)
T TIGR00924       272 YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLK  351 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHH
Confidence            34555555555666776677777888887765554222    45555555555555555544    445541222333  


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 007580          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (597)
Q Consensus       139 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~  218 (597)
                      +.++.++..++...+++......                   .+...+.+++++..++.++|.....|...+++++..|+
T Consensus       352 ~~~G~~l~~~~~~~~~~~~~~~~-------------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~  412 (475)
T TIGR00924       352 FTLGMLFCGASFLTFAASIWFAD-------------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ  412 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence            36778888877777765421100                   00114778889999999999999999999999999999


Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       219 ~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      +.      |++.++++.....+|..+++.+.....+..+|.+.|...++.+++..+++++..+
T Consensus       413 ~~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       413 RL------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99      9999999999999999999999988777778888888777766665555544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.61  E-value=5.4e-06  Score=88.31  Aligned_cols=177  Identities=8%  Similarity=0.002  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (597)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~  152 (597)
                      ..++..++..........+...|+++.-+.+....+...+.-.+.-.+.-.+.+++-.| +|-++++.++.+.+++=..+
T Consensus       211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l  289 (400)
T PF03825_consen  211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLL  289 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHH
Confidence            34444455555555666777889876544777777777777777788888899999999 89999999999988887766


Q ss_pred             HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHH
Q 007580          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (597)
Q Consensus       153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~  232 (597)
                      .+....     |                  ........+.+..+.|+..+....+...++.+..|++.      |.++.+
T Consensus       290 ~a~~~~-----~------------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~  340 (400)
T PF03825_consen  290 YAYFSD-----P------------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQG  340 (400)
T ss_pred             HHHhcC-----C------------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHH
Confidence            665411     0                  00111223344567999999999999999999999999      999999


Q ss_pred             HHHH-HHHHHHHHHHHHHHHhhhccchHH------HHHHHHHHHHHHHHHHHHh
Q 007580          233 FFYL-SVTVGAIVAFTLVVYIQMEHGWGS------AFGALAIAMGISNMLFFIG  279 (597)
Q Consensus       233 ~~~~-~~~lg~~l~p~i~~~i~~~~gw~~------~f~i~~~~~~~~~~~~~~~  279 (597)
                      +++. ...+|..+|..++|++.|++|-+.      .+.+.+...++..+++.+.
T Consensus       341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            9776 468999999999999999876443      3444444444444444443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.53  E-value=9.3e-06  Score=85.60  Aligned_cols=177  Identities=8%  Similarity=0.073  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~  146 (597)
                      .+|.+.+........++..-...+.|.+..++-   +....|...+.-.+.-++...+..++-+| +|.|+.++++.++.
T Consensus       221 ~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~  299 (412)
T PF01306_consen  221 NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIM  299 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHH
Confidence            444444444444444454544567788765542   33456777777788888899999999999 89999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      ++=.+.++++                            .+...+.+.+.+-|+-.+.......-++++.+|++-      
T Consensus       300 ~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------  345 (412)
T PF01306_consen  300 AIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------  345 (412)
T ss_dssp             HHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------
T ss_pred             HHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------
Confidence            9888888877                            567888999999999999999999999999999887      


Q ss_pred             hhhHHHH-HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       227 R~~~~~~-~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      .++...+ ++.+..+|..+.+.++|++.|+.|.+-.|++.+.+.++..++..+..+
T Consensus       346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            7777777 578889999999999999999999999998888776665555554444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.53  E-value=1.1e-05  Score=85.75  Aligned_cols=140  Identities=11%  Similarity=-0.059  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 007580           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (597)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  167 (597)
                      +....+.|+++.+|.+..+.++.......+..++.++.+++.|| +||+....  .....++.+.........   .   
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~---~---  296 (394)
T PRK11652        226 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQS--VICCLLAGLLMWIPGWFG---V---  296 (394)
T ss_pred             HHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhc---c---
Confidence            34455678888899999998888877788888888888999998 67433322  222222222221111000   0   


Q ss_pred             cccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007580          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (597)
Q Consensus       168 ~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~  247 (597)
                                       .+...++++..+.++|.+...|...+...|.+| ++      ++...++.+...++|..+++.
T Consensus       297 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~~  352 (394)
T PRK11652        297 -----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAAL  352 (394)
T ss_pred             -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHHH
Confidence                             234556677788999999999999999999887 45      788889998888999999999


Q ss_pred             HHHHhhhccchHH
Q 007580          248 LVVYIQMEHGWGS  260 (597)
Q Consensus       248 i~~~i~~~~gw~~  260 (597)
                      +++++.+...+..
T Consensus       353 ~~~~~~~~~~~~~  365 (394)
T PRK11652        353 LSAMLPQTGQFSL  365 (394)
T ss_pred             HHHHccCCchHHH
Confidence            9998876644443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.53  E-value=8e-07  Score=93.23  Aligned_cols=138  Identities=12%  Similarity=0.008  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~  151 (597)
                      +.+.+..++.....+++..+++.|+++.+|.+..+++.....+.+...++.+++|+++|| +|||+.+..+..+...+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~  306 (366)
T TIGR00886       228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGAF  306 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHHH
Confidence            344444455555567778888999999999999999988999999999999999999999 8999888877766666655


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (597)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~  231 (597)
                      ++.+...     ++                   .+...+++..++.+++.|...+...+++++.+| ++      |++..
T Consensus       307 ~~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~  355 (366)
T TIGR00886       307 LVVLGLV-----SP-------------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVS  355 (366)
T ss_pred             HHHhcCC-----Cc-------------------chHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHH
Confidence            5554311     00                   134445555556666666666777788888887 45      89999


Q ss_pred             HHHHHHHHHH
Q 007580          232 NFFYLSVTVG  241 (597)
Q Consensus       232 ~~~~~~~~lg  241 (597)
                      ++.+...++|
T Consensus       356 g~~~~~~~~g  365 (366)
T TIGR00886       356 GLVGAIGNLG  365 (366)
T ss_pred             HHHHHhccCC
Confidence            8877776665

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.50  E-value=8.6e-06  Score=81.48  Aligned_cols=143  Identities=20%  Similarity=0.248  Sum_probs=110.0

Q ss_pred             HHHHHhhCCCh--HHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 007580           94 TFMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (597)
Q Consensus        94 ~yl~~~~~~s~--~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~  171 (597)
                      ..+..+++.+.  ...++..+.+.+...++.++.|.++|| +|||+.+..+.....++.+++.+...             
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~-------------   91 (338)
T COG0477          26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN-------------   91 (338)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc-------------
Confidence            33444555554  478889999999999999999999999 69998888888765556555555411             


Q ss_pred             cccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC-CCchhhhhhhhHHHHHHH-HHHHHHHHHHHHH
Q 007580          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLV  249 (597)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~R~~~~~~~~~-~~~lg~~l~p~i~  249 (597)
                                   .+...+++.|++.|++.+...+...++++|.+|+ +.      |+...+.... ...+|..++|.++
T Consensus        92 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  152 (338)
T COG0477          92 -------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLA  152 (338)
T ss_pred             -------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         2467888999999999999999999999999998 44      8888888777 5788888888777


Q ss_pred             HHhhhc--cchHHHHHHHHHHH
Q 007580          250 VYIQME--HGWGSAFGALAIAM  269 (597)
Q Consensus       250 ~~i~~~--~gw~~~f~i~~~~~  269 (597)
                      +.+...  .+|++.|.+.....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         153 GLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHhcchHHHHHHHHHHH
Confidence            776654  57998666555433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.45  E-value=1.5e-05  Score=78.60  Aligned_cols=157  Identities=12%  Similarity=0.104  Sum_probs=110.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~  146 (597)
                      ||..+........+.... |.+..+ .+.+++.+|+|.++...+-..-.++..++ ++.|.+.|+ +|.+.++.++.+..
T Consensus         1 rW~~l~a~~~v~~~~Gt~-Y~Fs~y-S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~   76 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSGTT-YTFSAY-SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLG   76 (250)
T ss_pred             ChhhHHHHHHHHHhcCcc-cchhhh-hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHH
Confidence            455444444444443332 444443 56789999999999999998888998875 788999998 89999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh
Q 007580          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (597)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (597)
                      .+|..++.++..-..  +                   ....+.+.+..++.+.+.+...........+.||. +      
T Consensus        77 ~~GY~~~~l~~~~~i--~-------------------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------  128 (250)
T PF06813_consen   77 FVGYGLLWLAVSGRI--P-------------------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------  128 (250)
T ss_pred             HHHHHHHHHHHhCcc--C-------------------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence            999999988744110  0                   02455666666666666666556666666688984 6      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME  255 (597)
Q Consensus       227 R~~~~~~~~~~~~lg~~l~p~i~~~i~~~  255 (597)
                      ||+..++.-....+++.+-..+...+...
T Consensus       129 RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen  129 RGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             cCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            89999997777777776655555444433

>PRK11462 putative transporter; Provisional

Probab=98.43  E-value=2.4e-05  Score=85.30  Aligned_cols=158  Identities=9%  Similarity=0.021  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHH
Q 007580           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (597)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~  152 (597)
                      .++...++..++..........|.+..++. ....+.....+.++..++.+++++++|| +|+|+++..+.++..+..++
T Consensus       232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~  309 (460)
T PRK11462        232 IVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLA  309 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHH
Confidence            333344444444333333333344433443 3344566677788888999999999999 89998876555444333333


Q ss_pred             HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh-hhhHH
Q 007580          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LDRFF  231 (597)
Q Consensus       153 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~-R~~~~  231 (597)
                      ..+.       +.                   .+...+++..++.|++.+...+...++++|..+.++-..-+. -+..+
T Consensus       310 ~~~~-------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~  363 (460)
T PRK11462        310 MFFV-------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISF  363 (460)
T ss_pred             HHHh-------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHH
Confidence            2221       00                   222334445566788887777777888999887432111111 24456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccch
Q 007580          232 NFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (597)
Q Consensus       232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw  258 (597)
                      +.+.+...+|.++++.++|++.+..|+
T Consensus       364 a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        364 AGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777788899999999998887655444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=0.00018  Score=76.78  Aligned_cols=101  Identities=20%  Similarity=0.261  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHH
Q 007580          111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL  190 (597)
Q Consensus       111 ~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l  190 (597)
                      ..+-.....+..++++.+.|. .|.|+.+.++...+....+..-.                             .|...+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~  105 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL  105 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence            445556677788999999997 89999999999888776655554                             356788


Q ss_pred             HHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007580          191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (597)
Q Consensus       191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~  247 (597)
                      +++-.+.|+|.+..+.-...++++..+++.      +.+..++.......+..+|..
T Consensus       106 yfssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi  156 (461)
T KOG3098|consen  106 YFSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGI  156 (461)
T ss_pred             HHHHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhH
Confidence            899999999999999999999999998887      666666644444444444433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.35  E-value=6.8e-06  Score=87.54  Aligned_cols=161  Identities=14%  Similarity=0.041  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      ....+++..++...++....+..+.|.+..+|.+.............+..++.++.-+|++| +|+|+++.++.++.+++
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~  315 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVG  315 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHH
Confidence            45555556667677766666666777787888888888888888888888889999999999 89999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhh-hh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LD  228 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~-R~  228 (597)
                      .+++.+...                          .+..++++..++.++|.+...+...++++|..+-+|..+-+. -|
T Consensus       316 ~~~~~f~~~--------------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG  369 (467)
T COG2211         316 YLLLYFTPA--------------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG  369 (467)
T ss_pred             HHHHHhhcC--------------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence            999888731                          467888888899999999999999999999998554322111 24


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~g  257 (597)
                      ..++.+.+..=+|.+++..+.|++....|
T Consensus       370 i~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         370 IVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            55666777777788888777777654433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=1.4e-06  Score=89.17  Aligned_cols=189  Identities=12%  Similarity=-0.043  Sum_probs=131.0

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccc--hHHHH
Q 007580           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTI  139 (597)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G--R~~~~  139 (597)
                      |+....+.+........++ ++.....-+.+++++.+.+..+.-+.+...--..+.+.++..+.|.|+|| ++  |....
T Consensus       264 ~~Ll~dP~I~~~agai~~~-n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k-~~~~~wl~~  341 (464)
T KOG3764|consen  264 WSLLMDPYILLIAGAITFS-NSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADK-YPHLRWLLS  341 (464)
T ss_pred             HHHHhCchHhhhhcchhhc-cchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHh-cCchhHHHH
Confidence            4444444333333333333 34434555777888888888555577777777788899999999999999 79  65544


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (597)
Q Consensus       140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (597)
                      ..+.++..+.+....++                            .++..+++-++..+++.+...+......+...+.+
T Consensus       342 ~~gl~~~G~~~~~iP~~----------------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~r  393 (464)
T KOG3764|consen  342 LGGLATVGVSSGPIPFA----------------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPR  393 (464)
T ss_pred             HHHHHHHHHHhchhHhh----------------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchh
Confidence            55544444333333333                            46777888888888888887777777777777665


Q ss_pred             CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 007580          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (597)
Q Consensus       220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~  280 (597)
                      ...+-..-++..++...+..+|..+||.++|.+.+..|++|...+.++..++...++.+.+
T Consensus       394 h~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  394 HVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR  454 (464)
T ss_pred             hccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5332223678888999999999999999999999999999998887777666555544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.32  E-value=1.4e-05  Score=87.59  Aligned_cols=178  Identities=8%  Similarity=0.053  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCChH----HHHHHHHHHHHHHHHHhhhhHHHhhcccchHH-------HHHHHHHHH
Q 007580           78 EMAERMAYFGLSVNMVTFMFYVMHKSFA----DSSNAVNNFLGISQASSVLGGFLADAYLGRYW-------TIAIFTTIY  146 (597)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~----~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~-------~~~~~~~l~  146 (597)
                      ..+....+......++.|.++..+.+..    ...+..+...+...+..++.|++.|| +|||+       -+.++.++.
T Consensus       278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~  356 (489)
T PRK10207        278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLC  356 (489)
T ss_pred             HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHH
Confidence            4444455555556777787754333211    22344444555666777788999999 79886       367777777


Q ss_pred             HHHHHHHHHhhh-ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          147 LAGLTGITLCAT-MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       147 ~~g~~~~~~~~~-~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      .++.+.++.... .....                   ...+.+.++...++.|+|.+...|...+++.+..|++.     
T Consensus       357 ~~~~~~~~~~~~~~~~~~-------------------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~-----  412 (489)
T PRK10207        357 SLGFLTAAAAGMWFADAQ-------------------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL-----  412 (489)
T ss_pred             HHHHHHHHHHHHhhcCCC-------------------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH-----
Confidence            767655433211 00000                   01345667778889999999999999999999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhh----------ccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i~~~i~~----------~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                       ++..++++++..++|..+|..++.+...          ...+.+.|...++..++..++++...+
T Consensus       413 -~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~  477 (489)
T PRK10207        413 -MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP  477 (489)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999888866521          112456666666655554444444333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.32  E-value=2.8e-05  Score=85.59  Aligned_cols=176  Identities=15%  Similarity=0.136  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH--hhCCCh------HHHHHHHHHHHHHHHHHhhhh----HHHhhcccchHHHHHHHHHHHH
Q 007580           80 AERMAYFGLSVNMVTFMFY--VMHKSF------ADSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        80 ~~~~~~~~~~~~l~~yl~~--~~~~s~------~~a~~~~~~~~~~~~~~~~~~----G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      +....++.+...++.++..  ..+.+.      ...++..+...+...++.++.    +++.|| ++..+.+.++.++..
T Consensus       283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l~~  361 (500)
T PRK09584        283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVLCS  361 (500)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHHHH
Confidence            4444555555555555443  111111      113444444444444554555    666777 677788899999999


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++.+.+++......                   +....+...++...++.++|.+...|...+++.+..|++.      |
T Consensus       362 l~f~~l~~~~~~~~-------------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------r  416 (500)
T PRK09584        362 GAFLVLPLGAKFAN-------------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------M  416 (500)
T ss_pred             HHHHHHHHHHHhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------H
Confidence            99888776632110                   0001345578888999999999999999999999999999      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhh----------ccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~----------~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      ++.++.+++...+|+.++..+.++...          ..+..+.|...+++.++..++++...+
T Consensus       417 g~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        417 GFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988888888877776653321          123667777766655544444444333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.26  E-value=8.6e-05  Score=79.72  Aligned_cols=169  Identities=12%  Similarity=0.060  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      .++...+..++....++.....+|.|+++.+|.+..+.++.......+..++..+.+.+.++ .++++.+.....+..++
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~ig  297 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD-PTEPRFIWRAVPIQLVG  297 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHH
Confidence            34445455555666667777778889999999999999988777777777777777776544 24444443333444444


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~  229 (597)
                      ..++.+....   .+                    .+...++++.++.++|.+...|+.....-  .+.+.+     +++
T Consensus       298 ~~l~~~~~~~---~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~  347 (413)
T PRK15403        298 LALLIVGNLL---WP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGT  347 (413)
T ss_pred             HHHHHHHHHH---cc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcH
Confidence            4444332110   00                    23334567778889999888888875332  222211     567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Q 007580          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (597)
Q Consensus       230 ~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~  270 (597)
                      ..++++.....+..+++.+.+++.++ +-++.|.+...+..
T Consensus       348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~  387 (413)
T PRK15403        348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence            77777777778888888899988765 55666665555443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.25  E-value=0.00013  Score=77.64  Aligned_cols=90  Identities=13%  Similarity=0.256  Sum_probs=68.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccCCCCCCCCCcccc
Q 007580          463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALA-GGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  541 (597)
Q Consensus       463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~-~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~  541 (597)
                      .++|..++.-++.|+..+......-+++...+|++.|.++.++.... -++|-.+|+++.+.+....+            
T Consensus       457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg------------  524 (618)
T KOG3762|consen  457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG------------  524 (618)
T ss_pred             cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh------------
Confidence            45566667778999999999999999999999999999999998754 46888888888887665443            


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 007580          542 NINTGRFDYLYWLLAVLSVINFCAFLYSA  570 (597)
Q Consensus       542 ~l~~~~~~~~f~~~a~l~~l~~~~~~~~~  570 (597)
                            -...|+.+++.+++.++++...-
T Consensus       525 ------~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  525 ------ARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHhh
Confidence                  13467777777776666555443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.24  E-value=3.8e-05  Score=67.78  Aligned_cols=89  Identities=18%  Similarity=0.337  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCC
Q 007580          464 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI  543 (597)
Q Consensus       464 s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l  543 (597)
                      +.+.+....++.+++.....+....++.+..|++.|+.++++.+....+|..+++.+.+.+.+..+        |     
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~-----  116 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG--------W-----  116 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc--------h-----
Confidence            444566667888888888899999999999999999999999999999999999999988765332        3     


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHhh
Q 007580          544 NTGRFDYLYWLLAVLSVINFCAFLYSA  570 (597)
Q Consensus       544 ~~~~~~~~f~~~a~l~~l~~~~~~~~~  570 (597)
                           ++.|++.+.+.++..++.+++.
T Consensus       117 -----~~~~~~~~~~~~~~~~~~~~~~  138 (141)
T TIGR00880       117 -----RAPFLFLAILALAAFILLAFLL  138 (141)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhhcC
Confidence                 5677777777777766665543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.23  E-value=0.00011  Score=76.49  Aligned_cols=168  Identities=15%  Similarity=0.127  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 007580           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA  157 (597)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~  157 (597)
                      -++..++++.--..+-+|--+.||++..+.+.....+..+..++..+.|++..|-.+.+++..+++.+..++..+..++.
T Consensus       217 l~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~  296 (403)
T PF03209_consen  217 LFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAG  296 (403)
T ss_pred             HHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666677788999999999999999999999999999999999988657888988899988888888777764


Q ss_pred             hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007580          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS  237 (597)
Q Consensus       158 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~  237 (597)
                      ..                         .+.+.+..+.+++|+|.|......-+..-|+..+++      -+.+++.|...
T Consensus       297 ~~-------------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaa  345 (403)
T PF03209_consen  297 PL-------------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAA  345 (403)
T ss_pred             hc-------------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHH
Confidence            32                         345788899999999999999888888999998888      78999999999


Q ss_pred             HHHHHHHHHHHHHHhhhc----------cchHHHHHHHHHHHHHHHHHH
Q 007580          238 VTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF  276 (597)
Q Consensus       238 ~~lg~~l~p~i~~~i~~~----------~gw~~~f~i~~~~~~~~~~~~  276 (597)
                      ..+...+|..++|.+.|.          .+|..+|.+-++..++++.+.
T Consensus       346 QA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  346 QAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999877552          346666776666665555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.21  E-value=0.0023  Score=67.48  Aligned_cols=171  Identities=9%  Similarity=-0.000  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCChHHHH-HHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSS-NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~a~-~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      ...++++..|+..+--  .-+++.+|+++. .|++..+.. -+.=.+.-.+....++...+.|. +|-|++++++.+-..
T Consensus         6 ~~~llc~~gf~~~frP--sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i   82 (412)
T PF01770_consen    6 ITLLLCLFGFFKEFRP--SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYI   82 (412)
T ss_pred             HHHHHHHHHHHHhcCC--CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence            4555555444433321  126778899987 899988876 34444555566667778999996 898999888888777


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      +...++.+.                            .+...+-+..++.|++.+. ..+..+++=-..|+++      -
T Consensus        83 ~t~~lll~~----------------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------y  127 (412)
T PF01770_consen   83 ITWLLLLFG----------------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------Y  127 (412)
T ss_pred             HHHHHHHHH----------------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------H
Confidence            766666554                            4566777778888877766 4455566656666655      4


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhh--ccchHHHHHHHHHHHHHHHHHHHH
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQM--EHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~--~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      .+..++...+..+|-.++.+++-.+..  ..++...+++......+++++.++
T Consensus       128 q~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  128 QKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF  180 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666676666666655544  345666777776666666655444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.20  E-value=7.1e-05  Score=77.29  Aligned_cols=155  Identities=13%  Similarity=0.075  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~  150 (597)
                      ...-.+..|+.--+-..+.++++.|+.+..|++..+++..++.+..+..+|.+++-++-.| +-..|.+.+..++-.+-+
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~  316 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLL  316 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHH
Confidence            3444445555555556677899999999899999999999999999999999999999998 788888888776655555


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (597)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~  230 (597)
                      +...++                            .+ ..-+.+.++.|+..+.++|.+.+...+..|++.+     .++.
T Consensus       317 ~~~~l~----------------------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~  362 (422)
T COG0738         317 LAVALI----------------------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG  362 (422)
T ss_pred             HHHHHh----------------------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce
Confidence            555544                            22 2344556789999999999999999999995442     2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchHHHHH
Q 007580          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG  263 (597)
Q Consensus       231 ~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~  263 (597)
                         .-....+|+++-|.+-|++.|..|-...+.
T Consensus       363 ---~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         363 ---LLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             ---eeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence               222345899999999999999998877766

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.11  E-value=1.3e-05  Score=85.14  Aligned_cols=173  Identities=9%  Similarity=-0.058  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 007580           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (597)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~  154 (597)
                      ++..++..++...+.+++--+++ +.+-.+...|.....-..+-.+.-++.++|..+ +|+-+++.+++..+++=.+...
T Consensus       377 f~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S  454 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYS  454 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHH
Confidence            33444444554555555544554 455555555544444455667777888999998 8999999999888887777777


Q ss_pred             HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 007580          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (597)
Q Consensus       155 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~  234 (597)
                      ..                            +|.++.+..-+++|+..+.++.++.+++++..|++-      |.++.++.
T Consensus       455 ~L----------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~  500 (618)
T KOG3762|consen  455 YL----------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLL  500 (618)
T ss_pred             Hh----------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHH
Confidence            65                            688899999999999999999999999999999999      88988885


Q ss_pred             H-HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580          235 Y-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY  283 (597)
Q Consensus       235 ~-~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  283 (597)
                      . ....+|-.+|.+|+|.+.+.+|-|..|.+.++.+++.++++....+..
T Consensus       501 ~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l  550 (618)
T KOG3762|consen  501 QGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL  550 (618)
T ss_pred             HHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4 455888999999999999999999999998888887777766554433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.07  E-value=2.6e-08  Score=108.00  Aligned_cols=189  Identities=14%  Similarity=0.086  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~  150 (597)
                      ....+...++..+..+....+..+++.+..+.+..  -.......+...++.+++.++.|| +|||++++++.++..+..
T Consensus       254 ~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~  330 (451)
T PF00083_consen  254 LLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICS  330 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccc
Confidence            34444444444333333334445556666777665  222223335556677788899999 899999999988777766


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (597)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~  230 (597)
                      +.++.....   .+.              ++ +..+...+............+..+....+.+|.||.+.      |.++
T Consensus       331 ~~~~~~~~~---~~~--------------~~-~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~  386 (451)
T PF00083_consen  331 LILGIIFFL---GVS--------------SS-SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTG  386 (451)
T ss_pred             ccccccccc---ccc--------------cc-cccccccceeeeeccccccccccccccccccccccccc------cccc
Confidence            665411000   000              00 00111121111111122222445666688899999999      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 007580          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (597)
Q Consensus       231 ~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~  286 (597)
                      .++.+....+++.++|.+..++.+..+-...|.+.+...++..+..++..|+.+++
T Consensus       387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  387 IGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGK  442 (451)
T ss_pred             cccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence            99988888899999998888887776634455555655555655556666655443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.05  E-value=0.0081  Score=63.28  Aligned_cols=63  Identities=16%  Similarity=0.209  Sum_probs=53.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580          463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  525 (597)
Q Consensus       463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~  525 (597)
                      .+++.++...+..|+-.+..+......+.+..|++.|-.++|.....-++|..++.++.-.+.
T Consensus       333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            356666667777888889999999999999999999999999999999999999888765543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.03  E-value=2.1e-06  Score=89.72  Aligned_cols=124  Identities=18%  Similarity=0.170  Sum_probs=99.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 007580          417 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  496 (597)
Q Consensus       417 ~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~  496 (597)
                      ++...+.+|..+-.++++..++.                       ...|.+.+.-.+.|+||....|...+++++.+|+
T Consensus        96 NR~~v~~vG~~iW~~Av~~~~fs-----------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~  152 (493)
T KOG1330|consen   96 NRKRVIAVGIFIWTLAVFASGFS-----------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD  152 (493)
T ss_pred             CcceEEeeHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcc
Confidence            34445667777777776666554                       2445556667889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580          497 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  576 (597)
Q Consensus       497 ~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~  576 (597)
                      +.|+++.+++++...+|+.+|-.....+.+.++       .|          .+.|++.++++++..++..++.++-.++
T Consensus       153 ~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~W----------r~af~~~avl~vi~~~L~~~f~~eP~rg  215 (493)
T KOG1330|consen  153 DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------WW----------RWAFRGSAVLGVIVGLLVFLFVREPERG  215 (493)
T ss_pred             hhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------ce----------EEEEEeehHHHHHHHHHHHhhccCcccc
Confidence            999999999999999999999988887776654       26          6789999999999999888888766554


Q ss_pred             ccCC
Q 007580          577 SEQK  580 (597)
Q Consensus       577 ~~~~  580 (597)
                      ..++
T Consensus       216 a~~~  219 (493)
T KOG1330|consen  216 ARDE  219 (493)
T ss_pred             cccc
Confidence            4443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.98  E-value=0.00057  Score=74.18  Aligned_cols=207  Identities=14%  Similarity=-0.031  Sum_probs=141.5

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCChH------HH---H-HHHHHHHHHHHHHhhhhHHHhhc
Q 007580           63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFA------DS---S-NAVNNFLGISQASSVLGGFLADA  131 (597)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~------~a---~-~~~~~~~~~~~~~~~~~G~lsD~  131 (597)
                      ..++.++.++.++..+|+.-++.+.+..+...|+.++ ++-++.      +.   + +....+.+...+..++--++.++
T Consensus       252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~  331 (477)
T TIGR01301       252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG  331 (477)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467788999999999999999999988888888753 443221      11   2 34444555555666677788898


Q ss_pred             ccc-hHHHHHHHHHHHHHHHHHHHHhhhccc-cCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhh
Q 007580          132 YLG-RYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVS  209 (597)
Q Consensus       132 ~~G-R~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~  209 (597)
                       +| ||++..++.++..++++...+...... ..+.    ++   +...- .|+.......++...+.|+..+.....-.
T Consensus       332 -~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~----~~---~~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPf  402 (477)
T TIGR01301       332 -WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY----DG---DGESL-PPPTGIKASALIVFAILGIPLAITYSIPF  402 (477)
T ss_pred             -hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc----cc---ccccc-CcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence             88 577779998888888888775432110 0000    00   00000 11111235566666789999999999999


Q ss_pred             hhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       210 ~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g--w~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                      +++++..+++..+    .|..+++++.+..+...+..+..|.+.+..|  -.+.+.+.++.++++.+..+...|+
T Consensus       403 al~s~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       403 ALASIRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HHHHHHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999965411    6999999999999999999888887655444  5667777888777777766665554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.98  E-value=5.6e-05  Score=82.16  Aligned_cols=165  Identities=13%  Similarity=0.119  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY  146 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~~~~~~~l~  146 (597)
                      .+|...+..++.....|++..++|.|+++..|++..+++.....+.++..++.+++|+++||.   +.+|..+.....++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            568888888999999999999999999986779999999999999999999999999999983   35665555555444


Q ss_pred             HH-HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          147 LA-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       147 ~~-g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      .+ |.+.+....                            +......+.+....+.....++...-..+...+..     
T Consensus       354 ~~~g~~~l~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----  400 (495)
T KOG2533|consen  354 AIIGAISLLAAA----------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----  400 (495)
T ss_pred             HHHHHHHHHhhc----------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence            33 433333321                            11122222223333344444455555555554433     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHH-HHHHHhhhccchHHHHHHHHH
Q 007580          226 HLDRFFNFFYLSVTVGAIVAF-TLVVYIQMEHGWGSAFGALAI  267 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p-~i~~~i~~~~gw~~~f~i~~~  267 (597)
                      +|-+..+.+..+.+.+++++| +.-+.....++|.+.|++...
T Consensus       401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence            144555555555544444444 444555555788888854433

>TIGR00788 fbt folate/biopterin transporter

Probab=97.95  E-value=2.9e-05  Score=84.77  Aligned_cols=137  Identities=9%  Similarity=-0.160  Sum_probs=108.1

Q ss_pred             HHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 007580           96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL  175 (597)
Q Consensus        96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~  175 (597)
                      ..+.+|+++...+.......++..++..+.+++.+| ++.|+++.++.++..++.....+..........   .      
T Consensus       279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g---i------  348 (468)
T TIGR00788       279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG---I------  348 (468)
T ss_pred             EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccccC---C------
Confidence            345789999999999999999999999999999998 899999999999888777554322110000000   0      


Q ss_pred             cCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007580          176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME  255 (597)
Q Consensus       176 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~  255 (597)
                               .+...++..-++.+++.+........++.+..|++.      +++.++++....++|..+++.+++++.++
T Consensus       349 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       349 ---------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             ---------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     111234445667888888888888999999999999      99999999999999999999999999887


Q ss_pred             cc
Q 007580          256 HG  257 (597)
Q Consensus       256 ~g  257 (597)
                      .|
T Consensus       414 ~g  415 (468)
T TIGR00788       414 IG  415 (468)
T ss_pred             cC
Confidence            76

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.88  E-value=0.00032  Score=77.60  Aligned_cols=197  Identities=13%  Similarity=0.046  Sum_probs=107.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      +..++.....++...+..+..+....+....+-+..+.+... .+..........++..++.++.|| +|||+.++.+..
T Consensus       290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~  367 (513)
T KOG0254|consen  290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAA  367 (513)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHH
Confidence            345555555555555554443333333334445566665433 334444555666777777999999 799999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      .+.++.++++...........   |            ........+....+.......+..+....+.+|.||.+.    
T Consensus       368 ~m~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~----  428 (513)
T KOG0254|consen  368 GMSICLVILAVVGVFALYYPN---S------------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL----  428 (513)
T ss_pred             HHHHHHHHHHHHHHHhccCCC---c------------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH----
Confidence            999999988876432111000   0            000112222222233334444445566678899999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH-HHHHhcCccc
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM-LFFIGTPLYR  284 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~-~~~~~~~~~~  284 (597)
                        |+.+.++-.....+...+--...-.+.+..++...|+..+....+... ..+...++.+
T Consensus       429 --r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  429 --RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             --HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence              888888754444333332222222222322234556655555555554 3444444443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.83  E-value=0.00014  Score=57.97  Aligned_cols=68  Identities=18%  Similarity=-0.024  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      ...|+...+...+.++++.|+. +.|++..+.+.+.++..+...++++++|+++|| +||++.++....+
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~   74 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHH
Confidence            3445555566677888899987 489999999999999999999999999999999 7988887766554

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.80  E-value=0.00043  Score=67.41  Aligned_cols=154  Identities=17%  Similarity=0.109  Sum_probs=94.7

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccc
Q 007580           93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (597)
Q Consensus        93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~  172 (597)
                      ..|+.+.+++...+.+.....-.....+...+.|-|+|+ -|||+..+..++    ..+++.+.-..             
T Consensus        60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtyci----tYiLsCiTKhS-------------  121 (454)
T KOG4332|consen   60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCI----TYILSCITKHS-------------  121 (454)
T ss_pred             eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehH----HHHHHHHhhcC-------------
Confidence            457778888888888866655556666677788999998 899997655544    44455554210             


Q ss_pred             ccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhh-hhhccCCCCCchhhhhhhhHHHH-HHHHHHHHHHHHHHHHH
Q 007580          173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVV  250 (597)
Q Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~-~~ad~~~~~~~~~~~~R~~~~~~-~~~~~~lg~~l~p~i~~  250 (597)
                                  +++-.++++|.+-|+..+.......+ +++|.-..+.- ++.....-|+= ..+.+.+-+.++.+.+.
T Consensus       122 ------------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~F-eqqWls~TFskA~ffgNglvAiiaGlfgn  188 (454)
T KOG4332|consen  122 ------------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGF-EQQWLSVTFSKAVFFGNGLVAIIAGLFGN  188 (454)
T ss_pred             ------------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCC-hHhhhhHHHHHHHHhhccHHHHHHHHHHH
Confidence                        35567899999999999988777655 45665533321 11112222222 22344455556666666


Q ss_pred             Hhhhcc--chHHHHHHHHHHHHHHHHHHH
Q 007580          251 YIQMEH--GWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       251 ~i~~~~--gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      ++.+.+  |.-.+|-..+...+++..+.+
T Consensus       189 ~lvd~~slGPVAPFdAAacfLaigmAvil  217 (454)
T KOG4332|consen  189 LLVDTFSLGPVAPFDAAACFLAIGMAVIL  217 (454)
T ss_pred             HHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence            676654  456667655554455444433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.76  E-value=0.0005  Score=77.88  Aligned_cols=179  Identities=11%  Similarity=0.053  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH-HHHHHhhhhHHHhhcccc--hHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY  146 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~~G--R~~~~~~~~~l~  146 (597)
                      .++...+..++....++++..++|.|+++.+|+++.+++++.....+ +..++.+++|+++|| ++  .|+++.++.++.
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r-~~~~~~~~~~~~~~~~  409 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKK-FKLNVKKAAYFAICLS  409 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeee-ecccHHHHHHHHHHHH
Confidence            56777778888899999999999999999999999999988887665 678999999999999 77  456777777666


Q ss_pred             HHHHHHHHHhhhc------------cccC----CCCC-ccccc---c--------ccc----------------------
Q 007580          147 LAGLTGITLCATM------------KVFM----PNQD-NCDRI---S--------QLL----------------------  176 (597)
Q Consensus       147 ~~g~~~~~~~~~~------------~~~~----~~~~-~c~~~---~--------~~~----------------------  176 (597)
                      +++.+++.....+            +...    .... .|+.+   +        +++                      
T Consensus       410 ~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~  489 (633)
T TIGR00805       410 TLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNM  489 (633)
T ss_pred             HHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcc
Confidence            6665443310000            0000    0001 34311   0        000                      


Q ss_pred             ------------------CCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHH-HH
Q 007580          177 ------------------GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LS  237 (597)
Q Consensus       177 ------------------~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~-~~  237 (597)
                                        +.|.+.=+..+..|++..++..+..+.........+-+..|+++      |..+.++.. +.
T Consensus       490 ~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~~  563 (633)
T TIGR00805       490 VYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLCM  563 (633)
T ss_pred             eecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHHH
Confidence                              11332221224445555555555555555556667778999999      999999944 45


Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 007580          238 VTVGAIVAFTLVVYIQME  255 (597)
Q Consensus       238 ~~lg~~l~p~i~~~i~~~  255 (597)
                      -.+|.+-+|++-|++.|.
T Consensus       564 rllg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       564 RVFATIPAPILFGLLIDV  581 (633)
T ss_pred             HHhcCCChhHHHhhhhhc
Confidence            577889999999999886

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.74  E-value=0.097  Score=56.11  Aligned_cols=194  Identities=9%  Similarity=-0.120  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~  150 (597)
                      .+.+....++.+++--..--..+.|+.+-+.-+.--.+..--.-.+...++.+.-|...|| .-|.+++..+.++.-+..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHH
Confidence            4555566666666655444555777776654444333333333455666677778888999 689999888877765555


Q ss_pred             HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhH
Q 007580          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (597)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~  230 (597)
                      +..+.........++           ...+ ........+.+...+..+.--+.....-++=-|+...=..++...+.+.
T Consensus        83 ~~s~~~~~~l~~~~~-----------~~~~-~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~  150 (432)
T PF06963_consen   83 AASCALFLLLLSYPS-----------SSSQ-SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARM  150 (432)
T ss_pred             HHHHHHHHHHHhCCc-----------cccc-cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHH
Confidence            444433211110010           0000 0001112222222222222222222233333455432111111113333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 007580          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       231 ~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  277 (597)
                      -+...=.=.+--.+||++.|.+....|...+.++.+...++++++=+
T Consensus       151 NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy  197 (432)
T PF06963_consen  151 NATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEY  197 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence            33333333456788999999998888888887777776666665533

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.74  E-value=2.7e-05  Score=81.38  Aligned_cols=178  Identities=15%  Similarity=0.062  Sum_probs=122.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH--------HHHHH-HHHHHHHhhhhHHHhhcccchHHHH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNF-LGISQASSVLGGFLADAYLGRYWTI  139 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~--------~~~~~-~~~~~~~~~~~G~lsD~~~GR~~~~  139 (597)
                      +.++..++..|+.-+++|+...+.- -+-+..++.+.+...        ...+. ..++..+..++..+.|+ +|||+.-
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s-~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQS-VIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHH-HHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHH
Confidence            5667777888888888888776643 334455654443322        11111 12223355667788998 8999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHH-HHHHHHhhhchhhhhhhhhhccCCC
Q 007580          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTV-LYITGFGAAGIRPCVSSFGADQFDE  218 (597)
Q Consensus       140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~-~~l~g~g~g~~~~~~~~~~ad~~~~  218 (597)
                      +.+.+++++....++..-..    .                    .+...+++. -+.+-++.-++......+-+|.||.
T Consensus       382 ~~GF~~~~i~~~~~~~~y~~----~--------------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa  437 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPYNQ----L--------------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA  437 (538)
T ss_pred             HhhHHHHHHHHHHHcCCccc----c--------------------cccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence            99999888877777654210    0                    011112211 1223344455556666777999999


Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-----ccchHHHHHHHHHHHHHHHHHHHH
Q 007580          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       219 ~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~-----~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                      +.      |+..-++.....-.|+++|...-.++.+     ..|.++.|++.+.++.+..+..++
T Consensus       438 rv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l  496 (538)
T KOG0252|consen  438 RV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL  496 (538)
T ss_pred             HH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence            99      9999999999999999999999999999     788999999999888777666544

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.55  E-value=0.00012  Score=76.51  Aligned_cols=165  Identities=12%  Similarity=0.081  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcc---cchHHHHHH-HHH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAI-FTT  144 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~~~~-~~~  144 (597)
                      +.++.+..+.+-..+++..=.+++++|+. .+|++.+..+.+-..-.+...+.+++.|..|||.   |||||.++. +.+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            55666666666666665555677788875 6899888888777777888899999999999984   798877664 455


Q ss_pred             HHHHHHHHHHHhhhccccC-CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchh
Q 007580          145 IYLAGLTGITLCATMKVFM-PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~  223 (597)
                      ..+++.++...+..+..+. ++          ..  .+.+......++++..+.=+..-..+...-++++|+...++   
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~----------~~--~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~---  175 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDN----------ER--KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA---  175 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCC----------cc--cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh---
Confidence            6667777777775543221 11          01  11223556777788888888888889999999999998776   


Q ss_pred             hhhhhh-HHHHHHHHHHHHHHHHHHHHHHh
Q 007580          224 KTHLDR-FFNFFYLSVTVGAIVAFTLVVYI  252 (597)
Q Consensus       224 ~~~R~~-~~~~~~~~~~lg~~l~p~i~~~i  252 (597)
                         +.+ +.+++.+...+|..+|..+++|.
T Consensus       176 ---~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  176 ---KKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             ---hhhccchhHHHHHHhcceeeeeccccc
Confidence               334 88889999999999998888754

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.53  E-value=0.0018  Score=71.65  Aligned_cols=156  Identities=12%  Similarity=0.029  Sum_probs=111.8

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH-
Q 007580           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-  139 (597)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~-  139 (597)
                      ..+.+|.+...+++.|+..+.+|++....|......++-+..   ..++....+.++..++.++.|++.-+ ++|.|-. 
T Consensus       305 Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw~l  383 (599)
T PF06609_consen  305 LFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKWQL  383 (599)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhHHH
Confidence            344556777878888888888898888888888877776653   45677777888888888899999987 7766655 


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (597)
Q Consensus       140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (597)
                      +++.+++++++..++...      +                    .|....+...++.|+|.|...........-..|++
T Consensus       384 i~~~~~~ta~~Gama~~~------~--------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~  437 (599)
T PF06609_consen  384 IFGSVLMTAFCGAMAAVR------P--------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDE  437 (599)
T ss_pred             HHHHHHHHHHHHHHHHcc------C--------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCch
Confidence            466666666655555431      1                    12233456667888888887777766666666777


Q ss_pred             CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007580          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI  252 (597)
Q Consensus       220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i  252 (597)
                      +      .+.+.++....-.+|+.+|..+-.-+
T Consensus       438 ~------ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  438 D------IGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             H------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            6      88888888888888888777665444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.51  E-value=0.0037  Score=57.09  Aligned_cols=108  Identities=17%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHH
Q 007580          109 NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML  188 (597)
Q Consensus       109 ~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  188 (597)
                      ...++......+..++...+.++ +|.|++++++.+.+.+-......                             ++..
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~~   90 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY-----------------------------PNSY   90 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh-----------------------------hhHH
Confidence            34444555667777888889998 89999999999888765544432                             3557


Q ss_pred             HHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007580          189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI  252 (597)
Q Consensus       189 ~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i  252 (597)
                      .++.+-.+.|+|.+..+.....++.+..++++      |++..+++......+..+|.++.-.+
T Consensus        91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   91 TLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888899999999999999999999888777      88888887777777777666555433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.46  E-value=0.058  Score=55.64  Aligned_cols=158  Identities=14%  Similarity=0.124  Sum_probs=93.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhh-----cccchHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD-----AYLGRYWTI  139 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD-----~~~GR~~~~  139 (597)
                      ++..+.+.++++...++.+- +|.... .+++-+.-|.|-++.+..-.+|  .=.-.-++++++.|     | +||||.-
T Consensus        27 ~~d~~~illLl~LYllQGiP-~GL~~~-iP~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~-~GrrksW  101 (510)
T KOG3574|consen   27 KGDRSSILLLLFLYLLQGIP-LGLIGA-IPLLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKR-FGRRKSW  101 (510)
T ss_pred             hhhhhhHHHHHHHHHHcCCc-hhHhhh-hHHHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHh-hccccce
Confidence            44445677777777787777 666664 4555556677766554332221  12334578899999     8 8999976


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (597)
Q Consensus       140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (597)
                      ++-+ -+.+|..+..++........               .+...++...+....++.-+..+..-.++-+..-.+..++
T Consensus       102 vvp~-q~llG~~mllLs~~v~~~~g---------------~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e  165 (510)
T KOG3574|consen  102 VVPC-QYLLGLFMLLLSYLVDRGLG---------------GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRE  165 (510)
T ss_pred             eeeh-HHHHHHHHHHHhhCCCcccc---------------cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHh
Confidence            6543 23456666655532111000               0011123333333445566666666666667667777777


Q ss_pred             CchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (597)
Q Consensus       220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~  249 (597)
                      +      .+-+......+.+.|.+++..+.
T Consensus       166 ~------lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  166 N------LGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             h------cCchhHHHHHHHhhhHHhhccee
Confidence            7      66666667777788888776654

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.40  E-value=0.0045  Score=66.32  Aligned_cols=85  Identities=13%  Similarity=0.144  Sum_probs=72.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007580          416 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  495 (597)
Q Consensus       416 ~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P  495 (597)
                      .+.++.+.++.+..++..++.++.                       .+...+.+.-+++|++|+... ....+++..+|
T Consensus        89 lG~K~vL~l~~l~Wsl~t~L~~fa-----------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP  144 (511)
T TIGR00806        89 LRYKPVLVLQALSFVCVWLLLLLG-----------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVP  144 (511)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC
Confidence            445556677777666666666654                       467788888899999999999 99999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007580          496 DAMKSIGSAYAALAGGLGCFAASILNSII  524 (597)
Q Consensus       496 ~~~rg~~~gl~~~~~~lg~~lg~~l~~~v  524 (597)
                      ++.|++++|+.+....+|.++++.+.+.+
T Consensus       145 ~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       145 PSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999983

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.40  E-value=0.0069  Score=66.15  Aligned_cols=160  Identities=11%  Similarity=-0.025  Sum_probs=101.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHhhhhHHHhhcccch--H----
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLADAYLGR--Y----  136 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~----~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR--~----  136 (597)
                      |...++.+++...+.-..+.-..+.+..|..+..+.+-    -.+++..+...+...+..|+.+++=.| .+|  |    
T Consensus       266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~-l~~~~~~~s~  344 (493)
T PRK15462        266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKE-SVAGNRTVRI  344 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHH-HhcCCCCCCc
Confidence            33344444444444445555555566666655432211    124555566556556666666666554 322  1    


Q ss_pred             H-HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhcc
Q 007580          137 W-TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ  215 (597)
Q Consensus       137 ~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~  215 (597)
                      + =+.++.++..++...+.++.....                   +....+..++++.-+++.+|+-...|...+++++.
T Consensus       345 ~~Kfa~g~~~~g~~f~~l~~~~~~~~-------------------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~l  405 (493)
T PRK15462        345 WGKFALGLGLMSAGFCILTLSARWSA-------------------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRI  405 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcC-------------------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHh
Confidence            1 267777777888777776543110                   00013566788888899999999999999999999


Q ss_pred             CCCCCchhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHh
Q 007580          216 FDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVVYI  252 (597)
Q Consensus       216 ~~~~~~~~~~~R~~~~~~~~~~~-~lg~~l~p~i~~~i  252 (597)
                      .|++-      |+..++.++... .+|..++..++++.
T Consensus       406 aP~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        406 EIPGV------TGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             ChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999      999999987743 67777766666655

>PTZ00207 hypothetical protein; Provisional

Probab=97.27  E-value=0.0029  Score=70.37  Aligned_cols=176  Identities=11%  Similarity=0.031  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCChHH--HHHHHHHHHHHHHHHhhhhHHHhhcccchHH---------
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSFAD--SSNAVNNFLGISQASSVLGGFLADAYLGRYW---------  137 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~s~~~--a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~---------  137 (597)
                      .+|+++...||..-.-..+..| .-++.+.+ |.+..+  ....++.+.+++++|.+.+|.++. +.-||+         
T Consensus       354 d~Wll~~~~~cg~g~gl~~~~N-~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~-~~~~~~~~~r~prt~  431 (591)
T PTZ00207        354 RLWCLLWSIFCCVGAHFVIIFN-ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEI-WSQKRRAEDRVPITI  431 (591)
T ss_pred             hHHHHHHHHHHhhCchheeeec-HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHH-HHHhhccccccchhH
Confidence            5677777777765554444455 46777778 663322  223789999999999999999993 222322         


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 007580          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (597)
Q Consensus       138 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~  217 (597)
                      .+.+..+ ..++.+++++..                           + ...++++-++.|++.|..+++....+.|+|.
T Consensus       432 ~l~~~~~-~~~~~lll~~~~---------------------------p-~~~L~~~~~lvg~~~G~~~~~~~~i~selFg  482 (591)
T PTZ00207        432 ALFIPSV-CIITMLTLFLTL---------------------------P-KAALPLPYFIAAFANGFMAATIALVTRTIFA  482 (591)
T ss_pred             HHHHHHH-HHHHHHHHHHHC---------------------------C-ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc
Confidence            2223333 455555555541                           1 1478899999999999999999999999999


Q ss_pred             CCCchhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHhhhcc----------c---hHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQMEH----------G---WGSAFGALAIAMGISNMLFFIGTPLY  283 (597)
Q Consensus       218 ~~~~~~~~~R~~~~~~~~~~~~lg~~l~-p~i~~~i~~~~----------g---w~~~f~i~~~~~~~~~~~~~~~~~~~  283 (597)
                       ++      -++-+++...+.-+|+.+- -.+.|.+.|.-          |   ++..|.+.+...+++.++-....-++
T Consensus       483 -k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~  555 (591)
T PTZ00207        483 -KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY  555 (591)
T ss_pred             -cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence             77      7888888888888888764 44566665421          2   68888888877777766655544433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.26  E-value=0.42  Score=51.89  Aligned_cols=166  Identities=10%  Similarity=0.004  Sum_probs=102.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHH-hhhhHHHhhcccchHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-----FADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIAI  141 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-----~~~a~~~~~~~~~~~~~~-~~~~G~lsD~~~GR~~~~~~  141 (597)
                      ++.++...+..|+-.+.|+.+.+     +.+.+..+     .+...++-+...+...+. .++-+++++| ++|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHH
Confidence            34566677777777777665543     46666552     234555555554554444 7889999999 899999988


Q ss_pred             HHHHHHHHHHHHHHhhhc--cccCCCCCcccccccccCCCCCccchhH---------HHHHHHHHHHHHhhhchhh-hhh
Q 007580          142 FTTIYLAGLTGITLCATM--KVFMPNQDNCDRISQLLGSCEPAKSWQM---------LYLYTVLYITGFGAAGIRP-CVS  209 (597)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~--~~~~~~~~~c~~~~~~~~~~~~~~~~~~---------~~l~~~~~l~g~g~g~~~~-~~~  209 (597)
                      ....+.....+.++....  ..++|. ..|++.       ....+.+.         +...+.-....+-...... ...
T Consensus        80 ~~~~F~~~f~lF~~vl~p~~~~~~p~-~~~~~~-------~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW  151 (472)
T TIGR00769        80 VISPFLGFFALFAFVIYPLSDLLHPT-ALADKL-------LSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFW  151 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcCCc-HHHHHH-------HhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            887777777776655321  112222 012100       00000111         1111111122333333444 678


Q ss_pred             hhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580          210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (597)
Q Consensus       210 ~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~  253 (597)
                      ++..|.+..++      -.+++++++.+.|+|..+++.+..++.
T Consensus       152 ~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       152 GFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998      889999999999999999999998876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.13  E-value=0.00011  Score=81.26  Aligned_cols=181  Identities=10%  Similarity=0.059  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH-HHHHHhhhhHHHhhcc-cchHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIAIFTTIYL  147 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~-~GR~~~~~~~~~l~~  147 (597)
                      .+....+...++.+...++.+++|-|+..+|++++++++.+.+...+ +.++|.++||++..|+ ++.|.++.+..+...
T Consensus       306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~  385 (539)
T PF03137_consen  306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI  385 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence            56777778888899999999999999999999999999988877655 7889999999999993 234444444444433


Q ss_pred             HHHHHHHHhhhc------------ccc--CC------CCCccccc------ccccCCCCCccchhHHHHHHHHHHHHHhh
Q 007580          148 AGLTGITLCATM------------KVF--MP------NQDNCDRI------SQLLGSCEPAKSWQMLYLYTVLYITGFGA  201 (597)
Q Consensus       148 ~g~~~~~~~~~~------------~~~--~~------~~~~c~~~------~~~~~~~~~~~~~~~~~l~~~~~l~g~g~  201 (597)
                      +..+.......+            ++.  ..      ....|+..      +-+.+.|...-..++..|++..++..+..
T Consensus       386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~  465 (539)
T PF03137_consen  386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT  465 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence            333321111000            000  00      00012110      01234566553345666666666666666


Q ss_pred             hchhhhhhhhhhccCCCCCchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhhcc
Q 007580          202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEH  256 (597)
Q Consensus       202 g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~-~~~~lg~~l~p~i~~~i~~~~  256 (597)
                      +..........-+..++++      |..+.++.. +...+|.+-||++-|++.|..
T Consensus       466 ~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  466 FMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             --------------------------------------------------------
T ss_pred             HhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            6666666666679999999      999999944 455778899999999998863

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.09  E-value=0.0055  Score=63.08  Aligned_cols=151  Identities=13%  Similarity=0.070  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccch-HHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYL  147 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-~~~~~~~~~l~~  147 (597)
                      ..+.++....+.....|....+.+.++ .+.+++++.+.|-+.+.-.+...+.++.-.+..|++.|. +-.+..++++..
T Consensus       261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v  340 (451)
T KOG2615|consen  261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV  340 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence            455555555544555555555556666 456999999999888887888888888888888885443 333344444433


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      -..++...+                            ....+++.+..+..+..+...++...++....|+++      |
T Consensus       341 P~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------r  386 (451)
T KOG2615|consen  341 PAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------R  386 (451)
T ss_pred             HHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------c
Confidence            344444443                            234678888899999999999999999999999999      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~  254 (597)
                      |...|+......++=++||+++|.+..
T Consensus       387 G~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  387 GTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            999999999999999999999988754

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.01  E-value=0.034  Score=61.56  Aligned_cols=176  Identities=10%  Similarity=0.022  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~  148 (597)
                      +..+.+.+..+...+.+|+..     +....+|.+..........   .........+.+-|+ +|||.....+.++..+
T Consensus       322 ~~~~~~~~~~~~~~~~y~gl~-----~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~-~gR~~~~~~~~~~~~~  392 (521)
T KOG0255|consen  322 YRTLYLLFIWFVFSLVYYGLS-----LNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPE-FGRRPPLFLSLFLAGI  392 (521)
T ss_pred             HHHHHHHHHHHHHhHHHHhhh-----hhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence            345555555555555555443     3344566555433333333   444444555899998 8999999999999998


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                      +++..+.....                         .+.....+...+..++.+....+...+.+|++|+..      |.
T Consensus       393 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~  441 (521)
T KOG0255|consen  393 GLLLFGWLPDD-------------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RN  441 (521)
T ss_pred             HHHHHHHhhcc-------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HH
Confidence            88888876320                         110123333334445555555666888999999999      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH  285 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~  285 (597)
                      .+.+.......+|.+++|.+...... ......+.+.+....+...+..+..++.+.
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence            99999999999999999988765544 222223222233333333334345554433

>PRK03612 spermidine synthase; Provisional

Probab=96.95  E-value=0.13  Score=56.80  Aligned_cols=154  Identities=12%  Similarity=0.112  Sum_probs=86.7

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHH-HHHHHHHHHHH-HHHHhhhccccCCCCCcc
Q 007580           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAGLT-GITLCATMKVFMPNQDNC  169 (597)
Q Consensus        92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~-~~~~l~~~g~~-~~~~~~~~~~~~~~~~~c  169 (597)
                      ..-.+...+|-+....+.+++.|.++..+|..++|+++++ .-|+.... +...+...... ++.....+.         
T Consensus        37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~---------  106 (521)
T PRK03612         37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFVAVELLLALLGGLSALILYAAFAFQ---------  106 (521)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            3445666778888888999999999999999999988754 22332211 11111111111 111110000         


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (597)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~  249 (597)
                                    ......++...++.++..|+..|....+..+... ++      -++..+-.|....+|+++|.++.
T Consensus       107 --------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l~~  165 (521)
T PRK03612        107 --------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGLAF  165 (521)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHHHH
Confidence                          0111223334456678888888877776654332 12      24556677888889999999998


Q ss_pred             HHhhh-ccch-HHHHHHHHHHHHHHHHHH
Q 007580          250 VYIQM-EHGW-GSAFGALAIAMGISNMLF  276 (597)
Q Consensus       250 ~~i~~-~~gw-~~~f~i~~~~~~~~~~~~  276 (597)
                      +++.- ..|- +..+.+.++-.+++++++
T Consensus       166 ~~vLlp~lG~~~t~~~~a~l~~~~a~~~~  194 (521)
T PRK03612        166 PFLLLPRLGLIRTAALTGSLNLLAALVFL  194 (521)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            88654 5664 444433333333443333

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.65  E-value=0.018  Score=46.50  Aligned_cols=64  Identities=8%  Similarity=-0.071  Sum_probs=58.4

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 007580           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (597)
Q Consensus        92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~  156 (597)
                      +.+.+.++.++|.++++++.+...+++.+|.+...++.++ ..+++.+..+.++.++.+..+++.
T Consensus        14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999998 688899999999989888888876

Note that many members are hypothetical proteins.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.46  E-value=0.014  Score=61.70  Aligned_cols=124  Identities=14%  Similarity=0.121  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh---
Q 007580          421 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA---  497 (597)
Q Consensus       421 ~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~---  497 (597)
                      .+.+|.++..++++++.+.....       .      ...+ .+...+.+.+.++++|.++.-|+...+..++.+++   
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~-------~------~~~~-~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~   68 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPP-------S------LPSG-IQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS   68 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSS-------S------C-------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcc-------h------hhhh-HHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence            46677778888887755442110       0      0011 34456777888899999999999999999999876   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580          498 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  576 (597)
Q Consensus       498 ~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~  576 (597)
                      .|..+...+.....+|..++..+.+.+.+..|        |          ...|.+.++..+++.+.++...++++++
T Consensus        69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~--------~----------~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG--------W----------FLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS---------H----------HHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhhhHHHHHHHHhhhhHhhcccchhhccccc--------h----------hhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            56777888899999999999999888876544        4          6788888888888888877776666665

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.38  E-value=0.021  Score=61.86  Aligned_cols=127  Identities=12%  Similarity=0.044  Sum_probs=106.6

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhH-HHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 007580           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGG-FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (597)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G-~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c  169 (597)
                      .+..|+...++++..+.+...+.......++.++.. .+.-. +|-|+++.++++...+...+.+++             
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~-------------  328 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFA-------------  328 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHh-------------
Confidence            446788889999999999888888888888888888 55665 899999999999999999999987             


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007580          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (597)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~  249 (597)
                                     ++.++.+....+ +.......|...++.+.+.++++      +++.+++....-.+.+.++|.+-
T Consensus       329 ---------------~~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~  386 (463)
T KOG2816|consen  329 ---------------TETWMMFAAGVV-VALAGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALY  386 (463)
T ss_pred             ---------------ccchhhhHHHHH-HHhhcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHH
Confidence                           455666666544 45556778999999999999999      99999999999999999999888


Q ss_pred             HHhh
Q 007580          250 VYIQ  253 (597)
Q Consensus       250 ~~i~  253 (597)
                      +.+.
T Consensus       387 ~~i~  390 (463)
T KOG2816|consen  387 GNIF  390 (463)
T ss_pred             HHHH
Confidence            7664

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.37  E-value=0.027  Score=63.33  Aligned_cols=184  Identities=13%  Similarity=0.055  Sum_probs=119.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH-HHHHHHHhhhhHHHhhcc-cchHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAY-LGRYWTIAIF  142 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~~~~G~lsD~~-~GR~~~~~~~  142 (597)
                      ..++ .+....+...++.+.+.++.+++|-|+.++++.+...+..+++.. ..+.++|.++||++.-|+ +.-|.+..+.
T Consensus       389 l~N~-if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~  467 (735)
T KOG3626|consen  389 LSNP-IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFV  467 (735)
T ss_pred             hcCc-hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHH
Confidence            3344 567788888999999999999999999999999999999888665 456788999999999983 2344444444


Q ss_pred             HHHHHHHHHHHHHhhhc------------c-ccCCCCC-------ccccc------------------------------
Q 007580          143 TTIYLAGLTGITLCATM------------K-VFMPNQD-------NCDRI------------------------------  172 (597)
Q Consensus       143 ~~l~~~g~~~~~~~~~~------------~-~~~~~~~-------~c~~~------------------------------  172 (597)
                      ++..++.++.+..-..+            + ...|..+       .|+..                              
T Consensus       468 ~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~  547 (735)
T KOG3626|consen  468 IVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTES  547 (735)
T ss_pred             HHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCccc
Confidence            33333333221111000            0 0001111       14210                              


Q ss_pred             --c-------------c----cc-----CCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          173 --S-------------Q----LL-----GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       173 --~-------------~----~~-----~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                        +             +    ++     +.|..+....+..|++..++.-+..+...+....++-+..++++      |.
T Consensus       548 ~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks  621 (735)
T KOG3626|consen  548 SGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KS  621 (735)
T ss_pred             ccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------ch
Confidence              0             1    01     12544444555556655555555556666667777789999999      99


Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHhhhc
Q 007580          229 RFFNF-FYLSVTVGAIVAFTLVVYIQME  255 (597)
Q Consensus       229 ~~~~~-~~~~~~lg~~l~p~i~~~i~~~  255 (597)
                      -+.++ +.+...+|.+-+|++-|++.|.
T Consensus       622 ~AlG~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  622 FALGFQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             hhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence            99999 4555578888999999998764

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.08  E-value=0.15  Score=54.72  Aligned_cols=160  Identities=13%  Similarity=0.046  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHhhCCC----hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchH-------HHHHHHHHHHHHHHHHHHHhh
Q 007580           89 SVNMVTFMFYVMHKS----FADSSNAVNNFLGISQASSVLGGFLADAYLGRY-------WTIAIFTTIYLAGLTGITLCA  157 (597)
Q Consensus        89 ~~~l~~yl~~~~~~s----~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~-------~~~~~~~~l~~~g~~~~~~~~  157 (597)
                      .+.+..|.++..+.+    +-...+..+.-.+...+..++..++--+ .||+       .-+.++..+...+...+....
T Consensus       304 ~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~-l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~  382 (498)
T COG3104         304 GSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTK-LGRGNKQPSTPIKFALGLILAGLGFLILLLAG  382 (498)
T ss_pred             cchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhH-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            345566665543322    0122344444445555566666666655 4443       233455555555555555442


Q ss_pred             hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007580          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS  237 (597)
Q Consensus       158 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~  237 (597)
                      ....                  .+.+..++++++..-+++++|.=.+.|...++++...|++-      .+..++.|.+.
T Consensus       383 ~~~~------------------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt  438 (498)
T COG3104         383 IWFG------------------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLT  438 (498)
T ss_pred             Hhhc------------------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHH
Confidence            2110                  01122467888889999999999999999999999999987      88889999999


Q ss_pred             HHHHHHHHHHHHHH------hhhccchHHHHHHHHHHHHHHH
Q 007580          238 VTVGAIVAFTLVVY------IQMEHGWGSAFGALAIAMGISN  273 (597)
Q Consensus       238 ~~lg~~l~p~i~~~------i~~~~gw~~~f~i~~~~~~~~~  273 (597)
                      ...|..++..+.+.      ..+.......|+..+....+..
T Consensus       439 ~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~  480 (498)
T COG3104         439 VAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIG  480 (498)
T ss_pred             HHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            99888888777762      2223345556666555444333

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.08  E-value=0.029  Score=59.12  Aligned_cols=183  Identities=13%  Similarity=0.039  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHH-HHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG  149 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~-~~~~~~~l~~~g  149 (597)
                      +++++....+....+|+..+.+-.- ...-|.+...+|.+...-.+++.++..+.|.++|| ....+ +.++......++
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk-tk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADK-TKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHH
Confidence            3444444444444445554443212 23446666788888888899999999999999999 55444 444444444444


Q ss_pred             H-HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          150 L-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       150 ~-~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                      . .+......         .                ...+.++..-.+.|++..+..|...-+..|..-+..+      +
T Consensus       346 ~~~l~~~t~~---------~----------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------~  394 (480)
T KOG2563|consen  346 TLMLLTCTLF---------L----------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------G  394 (480)
T ss_pred             HHHHHHhhcc---------C----------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC------c
Confidence            2 11221110         0                1234555666788888888889888887776655542      3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccc---hHHH-HHHHHHHHHHHHHHHHHhcCccccc
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSA-FGALAIAMGISNMLFFIGTPLYRHR  286 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~g---w~~~-f~i~~~~~~~~~~~~~~~~~~~~~~  286 (597)
                      ...|+.+....+-+.+-..+-+...+..+   |.++ -+.......+..++..+.++.+++.
T Consensus       395 tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~  456 (480)
T KOG2563|consen  395 TSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL  456 (480)
T ss_pred             ccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence            44455444444444444555566655544   3332 2223333444444445556655443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.68  E-value=0.54  Score=50.47  Aligned_cols=139  Identities=9%  Similarity=-0.063  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007580           86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (597)
Q Consensus        86 ~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  165 (597)
                      -++...+..|+... |+++...+..=+.-.+....++.+..++.+| +|--|+-+++.....+.+.++..+...+.. | 
T Consensus       275 Lsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~-~-  350 (432)
T PF06963_consen  275 LSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGS-P-  350 (432)
T ss_pred             hcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCC-C-
Confidence            34455677888876 9999999999999899999999999999999 799999999988888777777665432210 0 


Q ss_pred             CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 007580          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (597)
Q Consensus       166 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~  245 (597)
                                      ....+...++.+..+.=+|-=+.--+..-++-|..|+++      |+...+.-+...++.-.+.
T Consensus       351 ----------------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~  408 (432)
T PF06963_consen  351 ----------------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLS  408 (432)
T ss_pred             ----------------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHH
Confidence                            011345566666666666666777788888889999988      9999999888888887777


Q ss_pred             HHHHH
Q 007580          246 FTLVV  250 (597)
Q Consensus       246 p~i~~  250 (597)
                      ..++-
T Consensus       409 ~~~~i  413 (432)
T PF06963_consen  409 FVLTI  413 (432)
T ss_pred             HHHHh
Confidence            65554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.41  E-value=0.16  Score=53.73  Aligned_cols=63  Identities=8%  Similarity=0.060  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (597)
Q Consensus       185 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~  253 (597)
                      ++.+..++..+..|+..|+...+....+.|..++++      |...++...++-.+|..++..++-++.
T Consensus       333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            356667777788999999999999999999999888      999999999999999998888776654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.33  E-value=6.8  Score=44.62  Aligned_cols=253  Identities=11%  Similarity=-0.012  Sum_probs=151.0

Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccc
Q 007580           94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS  173 (597)
Q Consensus        94 ~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~  173 (597)
                      .+..--.+...........++.....+..++....+|..-|+...+..-.+..+++.+...+.+.. .. |         
T Consensus         9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~-a~-~---------   77 (654)
T TIGR00926         9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG-AI-P---------   77 (654)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-cC-c---------
Confidence            333333444445567788899999999999999999986666677777777777777777665431 00 0         


Q ss_pred             cccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580          174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (597)
Q Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~  253 (597)
                               .........+..+.+.++.++..++-+.+.+++++.-++   ..+.+..++|++..+.+.+ |.+++..+.
T Consensus        78 ---------~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNi-GSlis~~i~  144 (654)
T TIGR00926        78 ---------SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINA-GSLISTIIT  144 (654)
T ss_pred             ---------ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence                     012234455677778899999999999999999987652   4455799999999887776 456666666


Q ss_pred             hccc-hHH------HHH-HHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhhcccCccccccccccCCC
Q 007580          254 MEHG-WGS------AFG-ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGK  325 (597)
Q Consensus       254 ~~~g-w~~------~f~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (597)
                      .... +..      .+. ..++.+++.++.++.+...++..++.+.......++.....+.++.+               
T Consensus       145 ~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~---------------  209 (654)
T TIGR00926       145 PILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR---------------  209 (654)
T ss_pred             HHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh---------------
Confidence            5443 321      233 45555556666666666555544443332222233322221111000               


Q ss_pred             cccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccc--cchhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHH
Q 007580          326 HSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLC--TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQA  403 (597)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  403 (597)
                               ..+               ........|...  .....++++...+++.++...+.+++.+.++......+.
T Consensus       210 ---------~~~---------------~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~  265 (654)
T TIGR00926       210 ---------FST---------------RSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWT  265 (654)
T ss_pred             ---------hcc---------------CCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence                     000               000000112111  112224567777888888888888888888766666666


Q ss_pred             hhhccc
Q 007580          404 YTMNTH  409 (597)
Q Consensus       404 ~~~~~~  409 (597)
                      ..+++.
T Consensus       266 ~qa~~m  271 (654)
T TIGR00926       266 LQATRM  271 (654)
T ss_pred             HHHHHh
Confidence            666644

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.02  E-value=1.3  Score=47.86  Aligned_cols=119  Identities=19%  Similarity=0.089  Sum_probs=75.2

Q ss_pred             HHHHHHHhhhhHHHhhcc--cchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHH
Q 007580          115 LGISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT  192 (597)
Q Consensus       115 ~~~~~~~~~~~G~lsD~~--~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~  192 (597)
                      ..+..++.++.+.+++|.  +||++++.++.+++.++.++.-+...  ...|-    +.++    .-....+++.....+
T Consensus       289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p--~dap~----~~t~----~~~~~~~~~~~~~~i  358 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFP--NDAPL----RPTD----SPPLLFTPSYYLALI  358 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcccc--ccCCC----CCCc----ccccccccchhHHHH
Confidence            334444555566666542  79999999999999988888776521  11110    0000    000111123444455


Q ss_pred             HHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007580          193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (597)
Q Consensus       193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~  250 (597)
                      .-++.|++-+........++++.+ +++      |..+++++-+-..++..++.....
T Consensus       359 i~~l~G~~D~~~~t~~~~ii~~~~-~~~------~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  359 IGFLLGFGDACFNTQRYVIIALLY-PDD------RAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHh-cCc------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence            557899999999999999999999 455      788888876666666665444333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=94.97  E-value=0.39  Score=47.55  Aligned_cols=62  Identities=13%  Similarity=0.027  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580          463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  525 (597)
Q Consensus       463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~  525 (597)
                      .+.+.+....++.+.+..+..........+.+|+ .||.+.|+.-...++++.+-+.+...+.
T Consensus        94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen   94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            3455555555556667666667767777789996 6999999999999999888777765543

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=93.93  E-value=0.54  Score=47.74  Aligned_cols=120  Identities=17%  Similarity=0.089  Sum_probs=72.2

Q ss_pred             ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHH
Q 007580           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (597)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~  140 (597)
                      ++.+++.-|.++.+....++...++.+ ..++...+..++|..+.  +    .-...-....++.+.+..+ +|-|+++.
T Consensus        21 ~r~~~~~~knv~i~s~~fl~~f~a~~g-l~nlq~~vn~~lg~~sl--~----~~y~~l~~s~m~~~~~Ir~-~g~K~tm~   92 (390)
T KOG3097|consen   21 RRKRLGILKNVLILSIAFLLTFTAYLG-LQNLQTSVNYDLGTVSL--G----ALYLSLIDSSMFMPLLIRF-LGTKWTMV   92 (390)
T ss_pred             cccccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhcCcccchh--h----hhhHHHHHHHHHHHHHHHH-HhhHHHHH
Confidence            345555566677776666665555443 34555554444433221  1    1112233344555577776 89999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 007580          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (597)
Q Consensus       141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~  217 (597)
                      ++...+......--.                             +.+..++.+-...|+|.+.++..-.+++++.-.
T Consensus        93 lav~~Y~lyiA~Nl~-----------------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   93 LAVFPYALYIAANLE-----------------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHHHHHHHhhcc-----------------------------hhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            887766543322211                             355667777788999999999888888876654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=93.87  E-value=0.6  Score=50.52  Aligned_cols=132  Identities=13%  Similarity=0.116  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 007580          419 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL-SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA  497 (597)
Q Consensus       419 ~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~  497 (597)
                      .+-+..|.++++++..+...++..                  + . ..+++....++.|+|.+-.. ..=.++++..-.+
T Consensus       102 k~Pli~s~ii~~~g~llY~~l~~~------------------~-~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~  161 (488)
T KOG2325|consen  102 KKPLIVSFLIAIIGNLLYLALAYV------------------P-NGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVE  161 (488)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhc------------------c-cchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCcc
Confidence            344677888888888777555422                  2 2 56778889999998854333 3455666655556


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007580          498 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  575 (597)
Q Consensus       498 ~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~  575 (597)
                      .|.++++..+....+|.++||.+...+.....    .+..|++. +.-+.|...=|+.+++.++.+++..++.+|..+
T Consensus       162 dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~----~G~~i~~~-~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  162 DRPRAFAATSGGFVLGIILGPTIQLAFTPLGE----KGFMILPG-LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             chHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC----CceEEcCc-ceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            67788888888888888888887665443211    11123331 333335555678888888888888888776543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.83  E-value=0.86  Score=49.23  Aligned_cols=89  Identities=16%  Similarity=0.188  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccc
Q 007580          465 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEA---PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  541 (597)
Q Consensus       465 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~---P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~  541 (597)
                      .......+++..+|..+.-....+.+.|..   |.+ ||...+....+..+|+.++..+.|.+....+            
T Consensus        86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~------------  152 (433)
T PF03092_consen   86 AAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG------------  152 (433)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC------------
Confidence            334445556667777777777777777654   555 8888999999999999999999887665433            


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007580          542 NINTGRFDYLYWLLAVLSVINFCAFLYSAYR  572 (597)
Q Consensus       542 ~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~  572 (597)
                            +...|.+.+++.++..+..+++..+
T Consensus       153 ------~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  153 ------PQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             ------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence                  1234667677777666665666555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=92.23  E-value=4.7  Score=41.58  Aligned_cols=99  Identities=13%  Similarity=0.078  Sum_probs=62.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccC
Q 007580          463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  542 (597)
Q Consensus       463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~  542 (597)
                      ..+++.-..|+++.....+..+....-+++...++.-|...|+++++.-+   +=+++.-++.+..|  -     -++-.
T Consensus       324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~---lQsilT~iVvd~~g--~-----~L~ir  393 (433)
T KOG3810|consen  324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALI---LQSILTLIVVDDRG--L-----GLDIR  393 (433)
T ss_pred             cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHH---HHHhheEEEEcccc--c-----CCCcc
Confidence            46788888999998888888888888888888888888888887765433   33333333333222  0     01111


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 007580          543 INTGRFDYLYWLLAVLSVINFCAFLYSAY  571 (597)
Q Consensus       543 l~~~~~~~~f~~~a~l~~l~~~~~~~~~~  571 (597)
                      .+-.-|..+|.+++++.++...+.+...+
T Consensus       394 ~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~  422 (433)
T KOG3810|consen  394 TQFVVYSSYFIVLGVIFLIGFGIEYLMCR  422 (433)
T ss_pred             eeEEEEeehHHHHHHHHHHHHHHHHHHhh
Confidence            11113445688888888888776554433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.64  E-value=0.84  Score=45.11  Aligned_cols=140  Identities=13%  Similarity=0.086  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhcccchHHH---HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcc
Q 007580          107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWT---IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK  183 (597)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~---~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~  183 (597)
                      -|.+.+.|.++..+|+-+...+..|  .|.++   +.+..++..+.+.+..+...   ..|                  +
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP------------------~  340 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSIAALLLPILTSS---VSP------------------S  340 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHHHHHHHHHHHhc---cCC------------------C
Confidence            3788888888888888888777766  33332   22222222222221111111   111                  1


Q ss_pred             chhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHH
Q 007580          184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG  263 (597)
Q Consensus       184 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~  263 (597)
                      +.+...-+++..++-.+.|..+|.+.-+-.+..|+++      |...++++....++-.-++-...--=....+-|..|.
T Consensus       341 kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~  414 (454)
T KOG4332|consen  341 KESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFG  414 (454)
T ss_pred             cCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhh
Confidence            2334445677778888999999999999999999998      9999999999888766543211000001235677888


Q ss_pred             HHHHHHHHHHHH
Q 007580          264 ALAIAMGISNML  275 (597)
Q Consensus       264 i~~~~~~~~~~~  275 (597)
                      +..+...++.+.
T Consensus       415 icS~~~~~a~i~  426 (454)
T KOG4332|consen  415 ICSAFLFVASIL  426 (454)
T ss_pred             hhHHHHHHHHHH
Confidence            887766655443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=89.54  E-value=32  Score=36.67  Aligned_cols=63  Identities=19%  Similarity=0.270  Sum_probs=51.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580          463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  526 (597)
Q Consensus       463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~  526 (597)
                      .++.++-+.-++.|++... -...+++++..+|++.--++++......-+|.++|+++...+..
T Consensus        92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen   92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777776543 56778999999999999999999999999999999988887654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=88.53  E-value=5  Score=36.66  Aligned_cols=63  Identities=10%  Similarity=0.008  Sum_probs=55.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007580          463 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  525 (597)
Q Consensus       463 ~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~  525 (597)
                      ...+.+++.-++.|+|..+.....-.++.+...++.|++..+++......+.++|.++.-.+.
T Consensus        87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888899999999999999999999999999999999999999999998888766554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=86.38  E-value=35  Score=34.88  Aligned_cols=60  Identities=13%  Similarity=0.210  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007580          464 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  523 (597)
Q Consensus       464 s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~  523 (597)
                      +++.....+++-|+-.+..+.+..--+.+..+++.|-.+|+.....-++|-.++.++.-.
T Consensus       341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp  400 (409)
T KOG3880|consen  341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP  400 (409)
T ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence            444444444445554455566666667778889999999999999999998888877443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=85.83  E-value=6.5  Score=42.48  Aligned_cols=156  Identities=10%  Similarity=-0.021  Sum_probs=83.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCChH-HHHHHHHHHHHHHHHHhhhhHHHhhcccchH-HHHHHHHHH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRY-WTIAIFTTI  145 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~s~~-~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~-~~~~~~~~l  145 (597)
                      |.+|...+..++..+.+..+.+.........- +.++. ..-.....|.++=.+|..+..+..  +-.+| +.+.+..+.
T Consensus       269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~--~p~~~~~~l~i~s~~  346 (437)
T TIGR00939       269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM--WPDEDSRWLPILSFL  346 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE--eeCCCccchHHHHHH
Confidence            44555555555554444444444322222221 12222 333555566666666665444321  01222 234444455


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      -.+...+..++...+..+                .+.--++-+..++..++.|+..|-.......+..+..++++     
T Consensus       347 R~iFIPlf~lcn~~~~~~----------------~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e-----  405 (437)
T TIGR00939       347 RVLFIPLFLLCNYPQRSR----------------LPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE-----  405 (437)
T ss_pred             HHHHHHHHHHhcCCcccc----------------CCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH-----
Confidence            555444444432211000                00000244566677889999999999999999989888776     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHH
Q 007580          226 HLDRFFNFFYLSVTVGAIVAFTL  248 (597)
Q Consensus       226 ~R~~~~~~~~~~~~lg~~l~p~i  248 (597)
                       |..+-.+..++.++|-.+|..+
T Consensus       406 -~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       406 -REVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHH
Confidence             7777777777777777766544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=84.67  E-value=66  Score=35.13  Aligned_cols=70  Identities=16%  Similarity=0.114  Sum_probs=51.5

Q ss_pred             HHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 007580          197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (597)
Q Consensus       197 ~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~  271 (597)
                      .++........--..+.+++|.+++     |..+++-+....++...+..++++.+.+..||...-.+.-++.++
T Consensus       276 y~~~~nlve~~~k~~v~~~~p~~~~-----~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       276 YGISINLVEVTWKSKLKAQYPSPNE-----YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4455555556666788888876543     899999998888888877777779999999999876654444433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=84.08  E-value=1.9  Score=45.98  Aligned_cols=92  Identities=10%  Similarity=-0.157  Sum_probs=58.5

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCh----------------HHHHHHHHHHHHHHHHHhhhh
Q 007580           63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSF----------------ADSSNAVNNFLGISQASSVLG  125 (597)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~----------------~~a~~~~~~~~~~~~~~~~~~  125 (597)
                      ..+..++.++.+++.+++..++.+...-+..-++-++ ++=++                ..-.|.+.++.....+.+++-
T Consensus       273 ~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~  352 (498)
T KOG0637|consen  273 ALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLV  352 (498)
T ss_pred             hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence            4456677888888888888888766555544444332 22111                112356666778888889999


Q ss_pred             HHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 007580          126 GFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (597)
Q Consensus       126 G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~  155 (597)
                      -+++|+ +|-|+.+..+...+.++..+..+
T Consensus       353 ~~l~~~-~g~r~~y~~~~~~f~~~~~~~gl  381 (498)
T KOG0637|consen  353 EKLSRK-FGTRKRYWGGVNAFGLATGLAGL  381 (498)
T ss_pred             HHHHHh-cCcceEEeehhHHHHHHHHHHhh
Confidence            999998 89665555555545555554443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=83.44  E-value=73  Score=34.68  Aligned_cols=168  Identities=10%  Similarity=0.047  Sum_probs=100.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHH-HHHHHhhhhHHHhhcccchHHHHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF  142 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~~GR~~~~~~~  142 (597)
                      -++.++.+.+..+|-.+.++.+.+     +.+.+.++   +.....+=..... .+.+..++-+++.++ +-|.+++.+.
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~   98 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHH
Confidence            455667777777776666443322     34444443   3344455555555 677888899999998 7999999888


Q ss_pred             HHHHHHHHHHHHHhhhcc--ccCCCCCcccccccccCCCCCccc----------hhHHHHHHHHHHHHHhhhchh-hhhh
Q 007580          143 TTIYLAGLTGITLCATMK--VFMPNQDNCDRISQLLGSCEPAKS----------WQMLYLYTVLYITGFGAAGIR-PCVS  209 (597)
Q Consensus       143 ~~l~~~g~~~~~~~~~~~--~~~~~~~~c~~~~~~~~~~~~~~~----------~~~~~l~~~~~l~g~g~g~~~-~~~~  209 (597)
                      ...+....+++++....-  .+||+...-++-+     ...|..          +....+++.   .-+-..... -.-.
T Consensus        99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~-----~~~p~~l~~~ili~~~Ws~s~~Yi~---aELWgslV~S~lFw  170 (509)
T COG3202          99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLF-----ADLPMFLKWFILIVGEWSYSLFYIM---AELWGSLVLSLLFW  170 (509)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCHHHHHHHH-----hhCCccceeeeEeecchHHHHHHHH---HHHHHHHHHHHHHH
Confidence            888888888877654310  1122100000000     001100          111122211   111112222 2456


Q ss_pred             hhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007580          210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (597)
Q Consensus       210 ~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~  254 (597)
                      .+..|++..++      -.+++++++...|++..++..+..++.+
T Consensus       171 ~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         171 QFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77889998888      7899999999999999999999988865

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=82.79  E-value=79  Score=34.60  Aligned_cols=57  Identities=14%  Similarity=0.110  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007580          466 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS  522 (597)
Q Consensus       466 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~  522 (597)
                      ..++.++++..+..-..+.+..+|-++++.+..=|++|.+.|...++|+.--..++-
T Consensus       406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL  462 (544)
T PF13000_consen  406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVL  462 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHH
Confidence            334567777778888888999999999999999999999999999999876555443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	597
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-11
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		1e-04

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 73  FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD------SSNAVNNFLGISQASSVLGG 126
           +I  +E  ER +++G+   +  F+   +  S  +      + +  ++F+       +LGG
Sbjct: 16  YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGG 75
Query: 127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186
           ++AD + G+Y TI   + IY  G       A + +F  +                     
Sbjct: 76  WIADRFFGKYNTILWLSLIYCVG------HAFLAIFEHSVQG------------------ 111
Query: 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246
               YT L++   G+ GI+P VSSF  DQFD+ +K       + F+ FY ++  G+  A 
Sbjct: 112 ---FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFAS 165
Query: 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 288
             +  +    G   AFG   + M ++ + F++G   Y H  P
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 37/211 (17%)
Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFL 128
           +F  EM ER +Y+G+   ++ +M+++     +H + A +++ +  +  +   S  +GGF+
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
           AD  +G     A+F    L  L  I L                 S L GS          
Sbjct: 78  ADRIIGA--RPAVFWGGVLIMLGHIVLALPFGA-----------SALFGSI--------- 115
Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
               +L I G G   ++P VS+     +DE  +      D  F+ F   + +GA +A  +
Sbjct: 116 ----ILIIIGTGF--LKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
           V   Q   G+  AF   AI M I  ++++ G
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	597
2xut_A	524	Proton/peptide symporter family protein; transport	1e-107
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  331 bits (851), Expect = e-107
 Identities = 106/567 (18%), Positives = 200/567 (35%), Gaps = 97/567 (17%)

Query: 64  KTGGWIAAL-FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLG 116
               W   + +I  +E  ER +++G+   +  F+   +  S       A + +  ++F+ 
Sbjct: 6   DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
                 +LGG++AD + G+Y TI   + IY  G   + +                     
Sbjct: 66  GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------ 107

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
                     +   YT L++   G+ GI+P VSSF  DQFD+     K+   + F+ FY 
Sbjct: 108 ---------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYF 155

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           ++  G+  A   +  +    G   AFG   + M ++ + F++G   Y H  P        
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LE 350
             V+ +A   +     +  L  +  + G  SA      I        L  A       + 
Sbjct: 216 LPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273

Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
               +      K      V+ V++++R++ + A       +  +  +  + QA  M    
Sbjct: 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ 333

Query: 411 GHP-------------------------------RGASQLQRVGIGLAVSILSVIWAGIF 439
                                                + L+++G G+A++ LS I  G  
Sbjct: 334 WFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTI 393

Query: 440 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 499
           +      +               LS +W ++ Y L+   EV      LEF Y +AP AMK
Sbjct: 394 QLMMDGGSA--------------LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439

Query: 500 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 559
               ++  L+  +G     + N  +KS T          +   ++   F   ++  A  +
Sbjct: 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVT-----EQIVQTGMSVTAFQMFFF--AGFA 492

Query: 560 VINFCAFLYSAYRYKYRSEQKHGNDYE 586
           ++    F   A  Y+ +   +     E
Sbjct: 493 ILAAIVFALYARSYQMQDHYRQATGSE 519

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 37/217 (17%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFL 128
           +F  EM ER +Y+G+   ++ +M++++       + A +++ +  +  +   S  +GGF+
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77

Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
           AD  +G    +     + + G   +                            A  +   
Sbjct: 78  ADRIIGARPAVFWGGVLIMLGHIVL----------------------------ALPFGAS 109

Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
            L+  + +   G   ++P VS+     +DE  +      D  F+ F   + +GA +A  +
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165

Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
           V   Q   G+  AF   AI M I  ++++ G      
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 6e-09
 Identities = 87/597 (14%), Positives = 166/597 (27%), Gaps = 186/597 (31%)

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           K + D+ K+        I   E  + +     +V+    +F+ +          V  F+ 
Sbjct: 36  KDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVE 84

Query: 117 ISQASSVLG---GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR-- 171
                 VL     FL           ++ T +Y+       L    +VF     N  R  
Sbjct: 85  -----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRLQ 135

Query: 172 ----ISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGADQFDERSKD 222
               + Q L    PAK         ++  + G G    A                +    
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL---------------DVCLS 173

Query: 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
           YK      F  F+L++                     +      + + +   L +   P 
Sbjct: 174 YKVQCKMDFKIFWLNL--------------------KNCNSPETV-LEMLQKLLYQIDPN 212

Query: 283 YRHRLPGGSPLTRVAQVLVAAFRK--RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
           +  R    S +      + A  R+  +   + +  L+ L  V         + K  +  +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNV--------QNAKAWNAFN 263

Query: 341 FRC--L----DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTE 394
             C  L     K       D ++ +     T T +      + L P    +++L  +   
Sbjct: 264 LSCKILLTTRFKQVT----DFLSAA-----TTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 395 FLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGI------FERYRR---- 444
              L  +          +P              +SI   I   I      ++ ++     
Sbjct: 315 PQDLPRE------VLTTNP------------RRLSI---IAESIRDGLATWDNWKHVNCD 353

Query: 445 --NYAISHGYE----------FSFLTAMPD--------LSAYWL-LIQYCLIGIAEVFCI 483
                I               F  L+  P         LS  W  +I+  ++ +      
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 484 VGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN------SIIKSVTGNPKKGQPN 537
             L+E   ++  ++  SI S Y  L          + N      SI+     N  K   +
Sbjct: 414 YSLVE---KQPKESTISIPSIYLEL-------KVKLENEYALHRSIVDHY--NIPKTFDS 461

Query: 538 WLAQNINTGRFD-YLYWLLAV-LSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKL 592
               ++     D Y Y  +   L  I       + +R  +        D+  +E K+
Sbjct: 462 D---DLIPPYLDQYFYSHIGHHLKNIEH-PERMTLFRMVFL-------DFRFLEQKI 507

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	597
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.94
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.89
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.84
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.51
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.38
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.34
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.16
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.06
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.88
2xut_A	524	Proton/peptide symporter family protein; transport	98.26

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=2.9e-29  Score=272.75  Aligned_cols=431  Identities=18%  Similarity=0.227  Sum_probs=276.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI  139 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~  139 (597)
                      +++++.++.+++..++..+++|++.++++.|++++     +|++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~   88 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV   88 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            44567788899999999999999999999999998     9999999999999999999999999999999845999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 007580          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (597)
Q Consensus       140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (597)
                      .++.++..++.++++++                            ++...++++|+++|+|.+...++..++++|++|++
T Consensus        89 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  140 (491)
T 4aps_A           89 FWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEH  140 (491)
T ss_dssp             HHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcc
Confidence            99999999999988876                            45678999999999999999999999999999987


Q ss_pred             CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCCc--hhh
Q 007580          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSP--LTR  295 (597)
Q Consensus       220 ~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~  295 (597)
                      +.+    |+.++++++...++|..++|.+++++.+..|||+.|++.++..+++.++++...++..+++  +..++  ..+
T Consensus       141 ~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (491)
T 4aps_A          141 DRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEE  216 (491)
T ss_dssp             TTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHH
T ss_pred             ccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccch
Confidence            733    7778888999999999999999999999999999999988777666665554433332211  11111  111


Q ss_pred             HHHHHHHHHHhhhccc--CccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhh
Q 007580          296 VAQVLVAAFRKRHAAF--SSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK  373 (597)
Q Consensus       296 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (597)
                      ..+.    .+......  .......+...+..          ..++................. ...|+... ....+++
T Consensus       217 ~~~~----~~~~g~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~  280 (491)
T 4aps_A          217 VKPL----LVKVSLAVAGFIAIIVVMNLVGWN----------SLPAYINLLTIVAIAIPVFYF-AWMISSVK-VTSTEHL  280 (491)
T ss_dssp             HHHH----HHHCCCCCHHHHHHHHHHHHHSSC----------CTTHHHHHHHHHHHHHHHHHH-HHHC------------
T ss_pred             hHHH----HHHHHHHHHHHHHHHHHHHhccCc----------ccccchhhhhHHHHHHHHHHH-HHHhhccc-ccHHHHH
Confidence            1110    00000000  00000000000000          000000000000000000000 00000000 0012233


Q ss_pred             HhHhhhhhHHHHHHHHHHHhcchhhHHHHHhh-hcccC--------------------------CCCC-CCChhHHHHHH
Q 007580          374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM--------------------------GHPR-GASQLQRVGIG  425 (597)
Q Consensus       374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------------~~~~-~~~~~~~i~~G  425 (597)
                      +.....++++...+++..+.+..+.+..+... .+...                          +.++ +.....++.+|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~  360 (491)
T 4aps_A          281 RVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG  360 (491)
T ss_dssp             -CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence            33344555556666666666665544433221 12110                          2222 22334555667


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q 007580          426 LAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY  505 (597)
Q Consensus       426 ~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl  505 (597)
                      .++.++++.++.......       +      .... .+.+++++.+++.++++++..|..++++.+.+|++.||.++|+
T Consensus       361 ~~~~~~~~~~~~~~~~~~-------~------~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  426 (491)
T 4aps_A          361 LMFAGLSFLLMAIPGALY-------G------TSGK-VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSM  426 (491)
T ss_dssp             HHHHHHHHTTTHHHHHHC-------C------CCTT-CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHH
T ss_pred             HHHHHHHHHHHHHHHHhc-------C------CCCC-ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence            666666666555442110       0      0111 4667778888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 007580          506 AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  576 (597)
Q Consensus       506 ~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~~  576 (597)
                      .++...+|..+++.+.+.+.+..                   +...|++.++++++..++++++.++.+++
T Consensus       427 ~~~~~~~g~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          427 WFLSSSVGSALNAQLVTLYNAKS-------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGGGSS-------------------TTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988765421                   24678888888888888877776665544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=7.1e-31  Score=287.99  Aligned_cols=451  Identities=22%  Similarity=0.329  Sum_probs=274.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CChHHHHHHHHHHHHHHHHHhhhhHHHhhccc-chHHHH
Q 007580           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI  139 (597)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GR~~~~  139 (597)
                      +++.++.+.+..++..+++|++.++++.|+++++|      ++..+++++.+.+.++..++.+++|+++|| + |||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~   88 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTI   88 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHH
Confidence            34456667888899999999999999999999999      999999999999999999999999999999 8 999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 007580          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (597)
Q Consensus       140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~  218 (597)
                      .++.++..++.++++++                            . +...++++|++.|++.+...++..++++|++|+
T Consensus        89 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  140 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ  140 (524)
T ss_dssp             HHHHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred             HHHHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence            99999999999888876                            3 577899999999999999999999999999999


Q ss_pred             CCchhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhh
Q 007580          219 RSKDYKTHLDR---FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTR  295 (597)
Q Consensus       219 ~~~~~~~~R~~---~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (597)
                      ++      |++   .+++++...++|..++|.+++++.+..||++.|++.++..+++.++++...++.+++++++++..+
T Consensus       141 ~~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (524)
T 2xut_A          141 SN------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHG  214 (524)
T ss_dssp             TT------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------
T ss_pred             cc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchh
Confidence            88      754   455599999999999999999999989999999998887766666555444443333332222222


Q ss_pred             HHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhh--hcccCCCCCC-------ccccc
Q 007580          296 VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL--KEDVINPSPW-------KLCTV  366 (597)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~~~~-------~~~~~  366 (597)
                      ..+.+....|+++...+. ... +.+..........   ..+.+....+..+....  ..+....++|       ..+..
T Consensus       215 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (524)
T 2xut_A          215 FLPVIRSALLTKVEGKGN-IGL-VLALIGGVSAAYA---LVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPD  289 (524)
T ss_dssp             ------------CTTHHH-HHH-HHHHHHHHHHHHT---GGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCS
T ss_pred             HHHHHHHHHhhhhcccCc-cch-hhhhhhhhhhhhh---hcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccH
Confidence            222222222222110000 000 0000000000000   00000000000000000  0000001122       01111


Q ss_pred             hhhhhhhHhHhhhhhHHHHHHHHHHHhcchhhHHHHHhhhccc----C-------------------CC-----C---CC
Q 007580          367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH----M-------------------GH-----P---RG  415 (597)
Q Consensus       367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------~~-----~---~~  415 (597)
                      .+..+++.......++....+++..+.+..+.+..+...++..    .                   +.     +   ++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (524)
T 2xut_A          290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK  369 (524)
T ss_dssp             SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence            1223344444444555555555555555555555443333220    0                   11     1   11


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007580          416 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  495 (597)
Q Consensus       416 ~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P  495 (597)
                      .+....+.+|+++.+++++++...+..+.             .... .+.+++++.+++.++++++..|..++++.+.+|
T Consensus       370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p  435 (524)
T 2xut_A          370 LTALRKMGAGIAITGLSWIVVGTIQLMMD-------------GGSA-LSIFWQILPYALLTFGEVLVSATGLEFAYSQAP  435 (524)
T ss_dssp             -CCHHHHHTHHHHHHHHHHTTTTTTTTTT-------------TTCC-CCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            23345566777777666665544321100             0011 456678888999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccc-CCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007580          496 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  574 (597)
Q Consensus       496 ~~~rg~~~gl~~~~~~lg~~lg~~l~~~v~~~~g~~~~~~~~w~~~-~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~  574 (597)
                      ++.||.++|++++..++|+.+++.+.+.+.+.++      .+|... +++.+  ...|++.++++++++++++++.++++
T Consensus       436 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (524)
T 2xut_A          436 KAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQ  507 (524)
T ss_dssp             TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc------cccccccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999998765322      234321 11111  23378888899998888888877776


Q ss_pred             ccccC
Q 007580          575 YRSEQ  579 (597)
Q Consensus       575 ~~~~~  579 (597)
                      +++.+
T Consensus       508 ~~~~~  512 (524)
T 2xut_A          508 MQDHY  512 (524)
T ss_dssp             -----
T ss_pred             cchhh
Confidence            65443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=2.2e-28  Score=265.61  Aligned_cols=162  Identities=14%  Similarity=0.132  Sum_probs=122.0

Q ss_pred             HHHHHHHhhCC--------ChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007580           92 MVTFMFYVMHK--------SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (597)
Q Consensus        92 l~~yl~~~~~~--------s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~  163 (597)
                      ..+++.++++.        +....+++++.+.++..++++++|+++|| +|||++++++.+++.++.++++++.......
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~  112 (491)
T 4gc0_A           34 TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSI  112 (491)
T ss_dssp             THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCS
T ss_pred             HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            34556666532        23456788899999999999999999999 8999999999999999999998642110000


Q ss_pred             CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 007580          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI  243 (597)
Q Consensus       164 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~  243 (597)
                      ..  ...        -...-.++...++++|+++|+|.|+..+..+.+++|..|++.      |++..++++.+..+|..
T Consensus       113 ~~--~~~--------~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~  176 (491)
T 4gc0_A          113 NP--DNT--------VPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQL  176 (491)
T ss_dssp             SS--SSS--------CCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHH
T ss_pred             cc--hhH--------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhh
Confidence            00  000        000001578899999999999999999999999999999999      99999999999999999


Q ss_pred             HHHHHHHHhhhc--------cchHHHHHHHHHHHH
Q 007580          244 VAFTLVVYIQME--------HGWGSAFGALAIAMG  270 (597)
Q Consensus       244 l~p~i~~~i~~~--------~gw~~~f~i~~~~~~  270 (597)
                      +++.++..+...        .+||+.+.+..+..+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (491)
T 4gc0_A          177 LVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL  211 (491)
T ss_dssp             HHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred             hhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence            998888766532        347766665554433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.94  E-value=9.5e-26  Score=241.58  Aligned_cols=181  Identities=13%  Similarity=0.048  Sum_probs=155.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      +.+|+.++.+++..++..+..+.+.+.++ ++.+++ .+..+.+++.+.+.++..++.+++|+++|| +|||+++.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~  100 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHH
Confidence            34566777777778888777666666554 555677 999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHH----hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 007580          145 IYLAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (597)
Q Consensus       145 l~~~g~~~~~~----~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~  220 (597)
                      +..++.+++++    +                            .++..++++|++.|++.+...+...++++|.+|+++
T Consensus       101 ~~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  152 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE  152 (451)
T ss_dssp             HHHHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh
Confidence            99999999988    5                            456789999999999999999999999999999988


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       221 ~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                            |++.+++++...++|..++|.+++++.+..| ||+.|++.++..++..++.++..++
T Consensus       153 ------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~  209 (451)
T 1pw4_A          153 ------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD  209 (451)
T ss_dssp             ------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccC
Confidence                  9999999999999999999999999888888 9999999888776655555444443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.93  E-value=1.7e-23  Score=223.23  Aligned_cols=180  Identities=12%  Similarity=-0.002  Sum_probs=151.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      +++++.++.+.+..++..+..+.+.+. .+++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence            445667777777777777776555444 556888999999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      +..++.+++......                         ++...++++|++.|++.+...+...++++|.+|+++    
T Consensus       100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  150 (438)
T 3o7q_A          100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----  150 (438)
T ss_dssp             HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred             HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence            999999988332110                         567899999999999999999999999999999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhh-hccc-------------------------hHHHHHHHHHHHHHHHHHHH
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFF  277 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~-~~~g-------------------------w~~~f~i~~~~~~~~~~~~~  277 (597)
                        |++.+++++...++|..++|.+++++. +..+                         ||+.|++.++..++..++++
T Consensus       151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence              999999999999999999999999988 5544                         99999877766555444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.89  E-value=1.9e-22  Score=211.05  Aligned_cols=167  Identities=13%  Similarity=0.121  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHH
Q 007580           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (597)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~  151 (597)
                      +.+++..++..+......+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHH
Confidence            44556667777776666666544 567899999999999999999999999999999999 8999999999999999999


Q ss_pred             HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHH
Q 007580          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (597)
Q Consensus       152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~  231 (597)
                      ++.++                            ++...+++.|++.|++.+...+...+++.|.+|+++      |++.+
T Consensus        81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  126 (375)
T 2gfp_A           81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN  126 (375)
T ss_dssp             HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred             HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence            88876                            577889999999999999999999999999999998      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007580          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (597)
Q Consensus       232 ~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~  274 (597)
                      ++++....+|..++|.+++++.+..|||+.|++.++..++..+
T Consensus       127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988999999987776554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.84  E-value=3.5e-21  Score=205.06  Aligned_cols=169  Identities=11%  Similarity=-0.113  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g  149 (597)
                      ..+.+.+..++..+++..+.++++.|+++++|++..+.+++.+.+.++..++++++|+++|| +|||++++++.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~   86 (417)
T 2cfq_A            8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHH
Confidence            45555555566666667777889999999999999999999999999999999999999999 89999999988776553


Q ss_pred             HHHHHHhhhccccCCCCCcccccccccCCCCCccchhH-HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                      ...+......                         ... ..++.++.+.+++.+...+...+...+..++..    +.|+
T Consensus        87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~  137 (417)
T 2cfq_A           87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN  137 (417)
T ss_dssp             HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred             HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence            2222110000                         000 012233444444443333333333333332211    1156


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~  269 (597)
                      ..++......++|..++|.+++++.+ .+|++.|++.++..
T Consensus       138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA  177 (417)
T ss_dssp             CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence            66677777788999999999999887 58999998765543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.51  E-value=2.4e-13  Score=144.94  Aligned_cols=178  Identities=15%  Similarity=0.119  Sum_probs=150.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhccc--chHHHHHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GRYWTIAIFTTI  145 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~--GR~~~~~~~~~l  145 (597)
                      .+.++.+++..++..+.++++..+++.|+++.+|++..+++...+.+.++..++.++.|+++|| +  |||+.+.++.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~  329 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  329 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence            3467777778888888889999999999998899999999999999999999999999999999 8  999988887766


Q ss_pred             HH-HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          146 YL-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       146 ~~-~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      .. ++.+++.+...                          .+...+++..++.|++.++..+....++.|.+|+++    
T Consensus       330 ~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----  379 (451)
T 1pw4_A          330 LVTIATIVYWMNPA--------------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA----  379 (451)
T ss_dssp             HHHHHHHHTTSCCT--------------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH----
T ss_pred             HHHHHHHHHHHhcc--------------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh----
Confidence            55 55544443210                          245667777888999999999999999999999998    


Q ss_pred             hhhhhHHHHHHHHHHH-HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          225 THLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~l-g~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                        |++.+++++...++ |..++|.+.|++.+..||++.|++.+++.+++.++.+.
T Consensus       380 --~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          380 --AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence              99999999999999 99999999999999999999999888777666655544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.38  E-value=1.2e-11  Score=131.23  Aligned_cols=165  Identities=10%  Similarity=0.004  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~  148 (597)
                      .++..++..++.....+++..+++.| +++.+|.+..+++...+.+.++..++.+++|+++|| +|||+++.++.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~  337 (438)
T 3o7q_A          259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMA  337 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence            45556666677777778888999999 888889999999999999999999999999999999 8999999999988888


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                      +.+++.+.                            .+... ++..++.|++.+...+...++..|.+|++       |+
T Consensus       338 ~~~~~~~~----------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~  381 (438)
T 3o7q_A          338 LCLISAFA----------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK  381 (438)
T ss_dssp             HHHHHHHC----------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred             HHHHHHHc----------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence            87776664                            22233 34447889999999999999999999844       45


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHH
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGIS  272 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~g-w~~~f~i~~~~~~~~  272 (597)
                      .+.++.. ...+|..++|.+.|++.+..| +++.|++.+++.++.
T Consensus       382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            5555554 556999999999999999988 999988765544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.34  E-value=1.1e-11  Score=131.44  Aligned_cols=176  Identities=10%  Similarity=0.055  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      .+...+..++....++....+++.|+.+.++..   ....+...+...++..++.+++|+++|| +|||+++.++.++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~  300 (417)
T 2cfq_A          222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHH
Confidence            333333333334444555566788887766532   3344566666667788889999999999 899999988887777


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++..++++.                            .+...+++..++.+++.+...+....+.+|.+|++.      |
T Consensus       301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~  346 (417)
T 2cfq_A          301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S  346 (417)
T ss_dssp             HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred             HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence            766555443                            234456666667777777777777889999999988      9


Q ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcC
Q 007580          228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       228 ~~~~~~-~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      ++..++ ++....+|..++|.++|++.+..|+...|.+.+++.+++.++.+...+
T Consensus       347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999988 577888999999999999998889998888877766666655444333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.16  E-value=8e-11  Score=127.09  Aligned_cols=187  Identities=12%  Similarity=0.009  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHH-----HHHH
Q 007580           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT  144 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~-----~~~~  144 (597)
                      ..+.+.+..++....+.....+++.|+.+.++.+....+.......++..++.++.|+++|| +|||+...     ++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHH
Confidence            34445555555566666677788899998888886677778888888888999999999999 89986554     5666


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      +..++..++.+......                   ++...+...+++..++.|++.+...+....++.|.+|++.    
T Consensus       363 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~----  419 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF----  419 (491)
T ss_dssp             HHHHHHTTTHHHHHHCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred             HHHHHHHHHHHHHHhcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence            66666555554321000                   0000245567777888999999999999999999999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcc
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY  283 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  283 (597)
                        |+++.++++...++|..++|.+.+++.+. ++.+.|++.+++.+++.++.+...++.
T Consensus       420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              99999999999999999999999988764 677778777776666665555544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.06  E-value=1.3e-08  Score=109.64  Aligned_cols=188  Identities=9%  Similarity=-0.020  Sum_probs=126.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHH
Q 007580           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (597)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~  147 (597)
                      ++..+......+....+.+.+ .+..+++.+..+.+............+...++.++++++.|| +|||+.++.+.....
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~  353 (491)
T 4gc0_A          276 GVIVIGVMLSIFQQFVGINVV-LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMA  353 (491)
T ss_dssp             THHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhHH-HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHH
Confidence            333333333333333333333 344566777788888777777777788889999999999999 899999999988888


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      ++...++......   .                    .+...++...+..+....+..+....+.+|.||.+.      |
T Consensus       354 ~~~~~l~~~~~~~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R  404 (491)
T 4gc0_A          354 IGMFSLGTAFYTQ---A--------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------R  404 (491)
T ss_dssp             HHHHHHHHHHHTT---C--------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------H
T ss_pred             HHHHHHHHHHhcc---c--------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------H
Confidence            7777666542210   0                    122222222222222233345677789999999999      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhh------ccchHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~  286 (597)
                      +++.++.+....++..+++.+..++.+      ..++.+.|++.+.+.+++.+..++..|+.+.+
T Consensus       405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence            999999999899999888887766543      34566678887777777777777777766543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.88  E-value=8.7e-10  Score=114.50  Aligned_cols=164  Identities=12%  Similarity=-0.101  Sum_probs=126.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH-HH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL  147 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l-~~  147 (597)
                      +.++...+..++.....+.+..+++.|+++.+|.+..+++.......++..++.++.|+++|| +||+  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence            346666677777788888888899999998899999999999999999999999999999999 7873  2223222 22


Q ss_pred             HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhh
Q 007580          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (597)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R  227 (597)
                      .+..+......     +                   ..+...+++..++.|++.+...+...++..|.+| ++      |
T Consensus       276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~  324 (375)
T 2gfp_A          276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A  324 (375)
T ss_dssp             TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred             HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence            22221111100     0                   0245566777888999999999999999999998 66      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHH
Q 007580          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  266 (597)
Q Consensus       228 ~~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~  266 (597)
                      ++.+++++...++|..++|.+.+++.+..+|...+.+.+
T Consensus       325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999999999999988878887776543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.26  E-value=7.9e-07  Score=96.48  Aligned_cols=149  Identities=12%  Similarity=0.062  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHh----hcccch----HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 007580          107 SSNAVNNFLGISQASSVLGGFLA----DAYLGR----YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (597)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~G~ls----D~~~GR----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  178 (597)
                      .+.......++..++.++.+++.    || .||    ++.+.++.++..++.+++++.....                  
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------------  397 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIER-MGVKLTALRKMGAGIAITGLSWIVVGTIQLMM------------------  397 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence            34444444444455555555553    44 343    2455666666666655554431000                  


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--
Q 007580          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--  256 (597)
Q Consensus       179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~~--  256 (597)
                       ..+...+...+++..++.|++.+...+...+++.|.+|++.      |++.+++++...++|..++|.+.+++.+..  
T Consensus       398 -~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~  470 (524)
T 2xut_A          398 -DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT  470 (524)
T ss_dssp             -TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH
T ss_pred             -cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence             00001244567777889999999999999999999999999      999999999999999999999999988743  


Q ss_pred             ch---------HHHHHHHHHHHHHHHHHHHHhcC
Q 007580          257 GW---------GSAFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       257 gw---------~~~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      +|         +..|++.+.+.+++.+++++..+
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          471 EQIVQTGMSVTAFQMFFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            23         33365555555555554444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	597
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.9
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.45
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.34

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.7e-25  Score=235.92  Aligned_cols=185  Identities=12%  Similarity=0.036  Sum_probs=150.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHH
Q 007580           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (597)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~  144 (597)
                      +.+|+.+..+++..+...+....+ +.+.+++. ++|+|.++.+++.+.+.++..++.+++|+++|| +|||+++.++.+
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~-~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~   97 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNF-ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSH-HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHH
Confidence            345666665655555555543333 34456775 589999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhh
Q 007580          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (597)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (597)
                      +..++.++++++....                        .+...+++.|++.|++.+...+...++++|++|+++    
T Consensus        98 ~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----  149 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWAT------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE----  149 (447)
T ss_dssp             HHHHHHHHHHHCHHHH------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH----
T ss_pred             HHHHHHhhccccchhh------------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc----
Confidence            9999998888763211                        245689999999999999999999999999999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCc
Q 007580          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFIGTPL  282 (597)
Q Consensus       225 ~~R~~~~~~~~~~~~lg~~l~p~i~~~i~~~-~gw~~~f~i~~~~~~~~~~~~~~~~~~  282 (597)
                        |++.+++++.+.++|..++|.+++.+... .+||+.|++.++..++..++.+...++
T Consensus       150 --r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  206 (447)
T d1pw4a_         150 --RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD  206 (447)
T ss_dssp             --HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred             --ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhccc
Confidence              99999999999999999999998887664 479999998887776655555554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.5e-22  Score=206.00  Aligned_cols=376  Identities=12%  Similarity=-0.028  Sum_probs=221.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHH
Q 007580           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (597)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~  148 (597)
                      |..|.+.+..|+..++.....+.++.|+++++|+|.++.+++.+.+.++..++.+++|+++|| +|||++++++.++..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence            356777777788888877788899999999999999999999999999999999999999999 8999999999988888


Q ss_pred             HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhh
Q 007580          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (597)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~  228 (597)
                      +..++.+.....                        ......++.+.+.+.+.+...........+..+++.    ..+.
T Consensus        86 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  137 (417)
T d1pv7a_          86 MFAPFFIFIFGP------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN  137 (417)
T ss_dssp             THHHHHHHTHHH------------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHS
T ss_pred             HHHHHHHhhhhh------------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhH
Confidence            887777652210                        111122333444444444433333333333332222    1145


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCchhhHHHHHHHHHHhhh
Q 007580          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRH  308 (597)
Q Consensus       229 ~~~~~~~~~~~lg~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (597)
                      ...+........+..++|.+++++.+. +|++.+........+..++.++..++.+..++..+...              
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  202 (417)
T d1pv7a_         138 FEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG--------------  202 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH--------------
T ss_pred             HHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh--------------
Confidence            556667777788889999999988764 55556655555444444444443332222111100000              


Q ss_pred             cccCccccccccccCCCcccccCCcccccCCcchhhHHHhhhhhcccCCCCCCccccchhhhhhhHhHhhhhhHHHHHHH
Q 007580          309 AAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML  388 (597)
Q Consensus       309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  388 (597)
                      . ..+.                          ..........       ..+         ..........   ......
T Consensus       203 ~-~~~~--------------------------~~~~~~~~~~-------~~~---------~~~~~~~~~~---~~~~~~  236 (417)
T d1pv7a_         203 A-NHSA--------------------------FSLKLALELF-------RQP---------KLWFLSLYVI---GVSCTY  236 (417)
T ss_dssp             S-CCCC--------------------------CCHHHHHHHT-------TSS---------HHHHHHHHHH---HHHHHH
T ss_pred             h-hccc--------------------------cccccccccc-------ccc---------cccchhhhhH---HHHHHH
Confidence            0 0000                          0000000000       000         0000000000   000000


Q ss_pred             HHHHhcchhhHHH----------HH----------hhhcccC--CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007580          389 NVILTEFLTLSVQ----------QA----------YTMNTHM--GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY  446 (597)
Q Consensus       389 ~~~~~~~~~~~~~----------~~----------~~~~~~~--~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~  446 (597)
                      .............          ..          ...-...  +..++......+.++.++.++++......       
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------  309 (417)
T d1pv7a_         237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------  309 (417)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred             HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------
Confidence            0000000000000          00          0000000  11122233344445555554444444332       


Q ss_pred             hhhcCccccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 007580          447 AISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCFAASILNSIIK  525 (597)
Q Consensus       447 ~~~~g~~~~~~~~~~~~s~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~lg~~lg~~l~~~v~  525 (597)
                                      .+.++++...++.+++.++..+...+++.+.+|++.|+++.|+. ++...+|..+++.+.+.+.
T Consensus       310 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~  373 (417)
T d1pv7a_         310 ----------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY  373 (417)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             ----------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            45566777778889999999999999999999999999999985 5677899999999999988


Q ss_pred             hccCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007580          526 SVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  575 (597)
Q Consensus       526 ~~~g~~~~~~~~w~~~~l~~~~~~~~f~~~a~l~~l~~~~~~~~~~~~~~  575 (597)
                      +..|                  +...|++.+++.++..++.+++.++.+.
T Consensus       374 ~~~g------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         374 ESIG------------------FQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHC------------------HHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHC------------------HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            7665                  4678888898888888877777665443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=5.8e-13  Score=138.68  Aligned_cols=183  Identities=15%  Similarity=0.057  Sum_probs=141.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHH
Q 007580           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (597)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l  145 (597)
                      .+.+.++.+....++.....+++..+++.|+.+.++.+..+.+.....+.+...++.+++|+++|| ++|++......+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~  324 (447)
T d1pw4a_         246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFF  324 (447)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHH
T ss_pred             HcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchh
Confidence            344567777777888888889999999999999999999999999999999999999999999999 7876544444333


Q ss_pred             HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhh
Q 007580          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (597)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (597)
                      ..+....+.....    .+.                   .+....++..++.|++.++..+....+..|.+|++.     
T Consensus       325 ~~~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-----  376 (447)
T d1pw4a_         325 MTLVTIATIVYWM----NPA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA-----  376 (447)
T ss_dssp             HHHHHHHHHHTTS----CCT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred             HHHHHHHHHHHHh----ccc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-----
Confidence            3222222222110    011                   345666777788899999999999999999999998     


Q ss_pred             hhhhHHHHHHHHHHH-HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 007580          226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (597)
Q Consensus       226 ~R~~~~~~~~~~~~l-g~~l~p~i~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  278 (597)
                       |+++.++.+...++ |..++|.+.|++.++.||+..|++.+.+.+++.+++..
T Consensus       377 -~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         377 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence             99999998887777 56678999999999999999998877766555544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2.6e-12  Score=130.84  Aligned_cols=145  Identities=10%  Similarity=0.035  Sum_probs=122.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHhhhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCC
Q 007580          102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP  181 (597)
Q Consensus       102 ~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  181 (597)
                      .+....+.......++..++.++.+++.|| +|||+++.++.++..++..++.+.                         
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  309 (417)
T d1pv7a_         256 QGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFA-------------------------  309 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred             cchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhccccc-------------------------
Confidence            344556667777788889999999999999 899999999999888888777765                         


Q ss_pred             ccchhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCchhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHhhhccchHH
Q 007580          182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWGS  260 (597)
Q Consensus       182 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~R~~~~~~~-~~~~~lg~~l~p~i~~~i~~~~gw~~  260 (597)
                         .+...+++..++.|++.+...+...+++.|.+|++.      |++.+++. .....+|..++|.+.|++.|..||++
T Consensus       310 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~  380 (417)
T d1pv7a_         310 ---TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG  380 (417)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             ---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence               456677888889999999999999999999999999      99999985 56678999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC
Q 007580          261 AFGALAIAMGISNMLFFIGTP  281 (597)
Q Consensus       261 ~f~i~~~~~~~~~~~~~~~~~  281 (597)
                      .|++.+++.++..++.++..+
T Consensus       381 ~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         381 AYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            999888777666665555444