Citrus Sinensis ID: 007588

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------

MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIEQEADEGLKEPKLVVYKDEDLGSLVSYSTSTESDTKQSQYAGDTNILENNGTDEGKEENKKMKQKTASSGSRGKDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLHV

ccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccEEEEEEcccHHcccccHHHHHccccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHcccccccccEEEEEEccEEEccccHHHHcccccccEEEEEcccccHHHHHHHHHHccccccHHHHccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccEEEccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHccccHHHHHHcccc

ccccccHHHHHHHHHHHHHHHHHHHHEHccccccccccccccHHHHHccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcEEHEcHHHHHccHHHccccccHHccccccEEEEEEcccHHHEEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcHcccEEEEEcccEEEEEccHHHHcEcccccEEccccccccccccccHHccccccccHHHHHcccccccHHHcccEEEEHHHHHHHcHHHHHHHHHHHcccccEHHccccccHHEHEcccccccccccEEccccccccccHHHHcccEEEEEccccccHHHHccHHHHHHHHHHcccccHHHHHccccc

MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIEQEadeglkepklvvykdedlgslvsyststesdtkqsqyagdtnilenngtdegkeeNKKMKqktassgsrgkdqtnqagarrspnvqaSLLRVSDEKIKEMKDQVIRAQAYlnfappgsnshLVKELKLRIKEVERAvgaatkdsdlSRRAFRRMNQMEATLDkashvypdcsaMATKLRAMTYNAEERVRLQKNQATYLVQLAsrttpkglhclsMQLTAEYFalqpeerhlpnqqdlhnpdlhhyavfSDNVLACAVVVNStvsfakepeKIVFHVVTdslnlpaiSMWFllnppgkatiqIQSIDNFNWLSTKYNAtlkkenshdprytsALNHLRFYLPDVFPALNkvllfdhdvvvqsdlgrlwnidmkgKVIGAVDTCKESEASFRRMdlfinfsdpliakkfdvKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLgykrplwkagslplgwvTFYKHTMALDKRWHVLglgydsgvarrDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKfinydhpflqrcnlhv

MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWdfaeelsttkfraenIRLNAIeqeadeglkepklvvykdedlgSLVSYststesdtkqsqyagdtnilenngtdegkeenkkmkqktassgsrgkdqtnqagarrspnvqasllrVSDEKIKEMKDQVIRAQAYlnfappgsnsHLVKELKLRIKEVEravgaatkdsdlsrraFRRMNQMEatldkashvypDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLgrlwnidmkgkVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQlgykrplwkagSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLHV

****RRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIE**********KLVVYK*****************************************************************************************VIRAQAYLNFA******HLVKELKLRIK**********************************HVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQ***********LHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK****DPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCN***

****RRWQRISILALLSVSVIAPVIFVSNRLKVFT***************************************************************************************************************************EKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIK**********************MNQMEATLDKASHVYPDCSAMATKLRAMTYNAE*******NQATYLVQLASRTTPKGLHCLSMQLTAEYF******************DLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH*

MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIEQEADEGLKEPKLVVYKDEDLGSLVS************QYAGDTNILENNGTD********************************PNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLHV

****RRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELST***********************P************************************************************************RSPNVQ**LLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLHV

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iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIEQEADEGLKEPKLVVYKDEDLGSLVSYSTSTESDTKQSQYAGDTNILENNGTDEGKEENKKMKQKTASSGSRGKDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLxxxxxxxxxxxxxxxxxxxxxSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLHV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		597	2.2.26 [Sep-21-2011]
Q9M9Y5		589	Probable galacturonosyltr	yes	no	0.964	0.977	0.595	0.0
Q8RXE1		610	Probable galacturonosyltr	no	no	0.993	0.972	0.576	0.0
Q93ZX7		616	Probable galacturonosyltr	no	no	0.968	0.938	0.429	1e-153
Q9LE59		673	Polygalacturonate 4-alpha	no	no	0.731	0.649	0.502	1e-142
Q0WQD2		680	Probable galacturonosyltr	no	no	0.731	0.642	0.475	1e-127
Q9ZPZ1		528	Putative galacturonosyltr	no	no	0.683	0.772	0.416	1e-103
Q949Q1		537	Probable galacturonosyltr	no	no	0.716	0.797	0.404	1e-96
Q9LSG3		559	Galacturonosyltransferase	no	no	0.765	0.817	0.391	5e-93
Q9SKT6		536	Probable galacturonosyltr	no	no	0.721	0.804	0.396	9e-91
Q9FWA4		561	Probable galacturonosyltr	no	no	0.601	0.639	0.431	2e-83

>sp\|Q9M9Y5\|GAUT6_ARATH Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1	Back alignment and function desciption

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/608 (59%), Positives = 449/608 (73%), Gaps = 32/608 (5%)

Query: 1   MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNA 60
           M Q+RRWQRI ILALLS+SV AP+IFVSNRLK  T +GR +F EELS  +F   ++RL+A
Sbjct: 1   MKQIRRWQRILILALLSISVFAPLIFVSNRLKSITPVGRREFIEELSKIRFTTNDLRLSA 60

Query: 61  IEQEADEGLKEPKLVVYKDEDLGSLVSYSTSTESDTKQSQYAGDTNILENNGTDEGKEEN 120
           IE E  EGLK P+L+++KD +      +++S ESD                 T + +EE 
Sbjct: 61  IEHEDGEGLKGPRLILFKDGE------FNSSAESD--------------GGNTYKNREEQ 100

Query: 121 KKMKQK-TASSGSRGK--DQTNQAG---------ARRSPNVQASLLRVSDEKIKEMKDQV 168
             + QK T SS  +G+     NQ           ++   N +    R +D K KE++D++
Sbjct: 101 VIVSQKMTVSSDEKGQILPTVNQLANKTDFKPPLSKGEKNTRVQPDRATDVKTKEIRDKI 160

Query: 169 IRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKA 228
           I+A+AYLNFAPPGSNS +VKEL+ R+KE+ER+VG ATKD DLS+ A RR+  ME  L KA
Sbjct: 161 IQAKAYLNFAPPGSNSQVVKELRGRLKELERSVGDATKDKDLSKGALRRVKPMENVLYKA 220

Query: 229 SHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFA 288
           S V+ +C A+ATKLRAM YN EE+V+ QKNQA YL+QLA+RTTPKGLHCLSM+LT+EYF+
Sbjct: 221 SRVFNNCPAIATKLRAMNYNTEEQVQAQKNQAAYLMQLAARTTPKGLHCLSMRLTSEYFS 280

Query: 289 LQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNL 348
           L PE+R +PNQQ+  + + +HY VFSDNVLA +VVVNST+S +KEPE+IVFHVVTDSLN 
Sbjct: 281 LDPEKRQMPNQQNYFDANFNHYVVFSDNVLASSVVVNSTISSSKEPERIVFHVVTDSLNY 340

Query: 349 PAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDV 408
           PAISMWFLLN   KATIQI +ID+ + L   Y+  L K+NS+DPR+ S LNH RFYLPD+
Sbjct: 341 PAISMWFLLNIQSKATIQILNIDDMDVLPRDYDQLLMKQNSNDPRFISTLNHARFYLPDI 400

Query: 409 FPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLI 468
           FP LNK++L DHDVVVQ DL RLW+IDMKGKV+GAV+TC E E+SFR M  FINFSD  +
Sbjct: 401 FPGLNKMVLLDHDVVVQRDLSRLWSIDMKGKVVGAVETCLEGESSFRSMSTFINFSDTWV 460

Query: 469 AKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKH 528
           A KF  +ACTWAFGMNL DL+EWR RKLT+ Y KY  LG KRPLWKAGSLP+GW+TFY+ 
Sbjct: 461 AGKFSPRACTWAFGMNLIDLEEWRIRKLTSTYIKYFNLGTKRPLWKAGSLPIGWLTFYRQ 520

Query: 529 TMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHP 588
           T+ALDKRWHV+GLG +SGV   DIEQAAVIHYDGVMKPWL+IG   YK YW   + Y H 
Sbjct: 521 TLALDKRWHVMGLGRESGVKAVDIEQAAVIHYDGVMKPWLDIGKENYKRYWNIHVPYHHT 580

Query: 589 FLQRCNLH 596
           +LQ+CNL 
Sbjct: 581 YLQQCNLQ 588

Probably involved in pectin biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp\|Q8RXE1\|GAUT5_ARATH Probable galacturonosyltransferase 5 OS=Arabidopsis thaliana GN=GAUT5 PE=2 SV=1	Back alignment and function description

>sp\|Q93ZX7\|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1	Back alignment and function description

>sp\|Q9LE59\|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1	Back alignment and function description

>sp\|Q0WQD2\|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2	Back alignment and function description

>sp\|Q9ZPZ1\|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1	Back alignment and function description

>sp\|Q949Q1\|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1	Back alignment and function description

>sp\|Q9LSG3\|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKT6\|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2	Back alignment and function description

>sp\|Q9FWA4\|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		597
224085587		605	glycosyltransferase, CAZy family GT8 [Po	0.984	0.971	0.663	0.0
225437237		588	PREDICTED: probable galacturonosyltransf	0.981	0.996	0.653	0.0
255559941		633	Glycosyltransferase QUASIMODO1, putative	0.993	0.936	0.621	0.0
297843472		595	hypothetical protein ARALYDRAFT_470701 [	0.994	0.998	0.600	0.0
356504981		625	PREDICTED: probable galacturonosyltransf	0.989	0.945	0.601	0.0
18390688		589	alpha-1,4-galacturonosyltransferase [Ara	0.964	0.977	0.595	0.0
356570614		625	PREDICTED: probable galacturonosyltransf	0.989	0.945	0.591	0.0
356502770		585	PREDICTED: probable galacturonosyltransf	0.976	0.996	0.582	0.0
334182350		602	alpha-1,4-galacturonosyltransferase [Ara	0.964	0.956	0.582	0.0
449458506		603	PREDICTED: probable galacturonosyltransf	0.984	0.975	0.578	0.0

>gi\|224085587\|ref\|XP_002307628.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi\|222857077\|gb\|EEE94624.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/612 (66%), Positives = 490/612 (80%), Gaps = 24/612 (3%)

Query: 1   MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNA 60
           M + RRWQRI +L+LL ++V+AP++FVS        +GR +   +LST ++R ++++LNA
Sbjct: 1   MKKFRRWQRIFLLSLLCLTVLAPILFVS--------VGRKELISDLSTLRYRRDSVQLNA 52

Query: 61  IEQEADEGLKEPKLVVYKDEDLGSLVSYSTSTESD--------------TKQSQYAGDTN 106
           IEQE  EGLK PKLVVY +++LGS +SYSTS E++              +K+SQ  G+T+
Sbjct: 53  IEQEEGEGLKGPKLVVYDEKELGSRISYSTSEENNDSKKYGNIGEIDRGSKRSQRGGNTS 112

Query: 107 ILENNGTDEGKEENKKMKQKTASSGSRGK--DQTNQAGARRSPNVQASLLRVSDEKIKEM 164
           I       E +EEN+++ Q+T +S S  K   Q+NQA  R   N+++ +   +DEK+K+M
Sbjct: 113 IPLERTNHESREENRQIPQETVTSRSEAKLQGQSNQATVRHDQNMRSPVRIFTDEKVKQM 172

Query: 165 KDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEAT 224
           KD +IRA+AYL+  PPGSNSHLVKEL+LRIKE ERAV AA KDSDLSR A ++   +E T
Sbjct: 173 KDDLIRAKAYLSMTPPGSNSHLVKELRLRIKESERAVSAANKDSDLSRSALQKKRSLEVT 232

Query: 225 LDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTA 284
           L KAS V+PDCSAMA KLRAMTYNAEE+VR QKNQATYLVQL+ RTTPKGLHCLSM+LTA
Sbjct: 233 LSKASRVFPDCSAMALKLRAMTYNAEEQVRAQKNQATYLVQLSGRTTPKGLHCLSMRLTA 292

Query: 285 EYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTD 344
           EYFAL PEER LPNQQ +H+ DL+HYAVFSDNVLACAVVVNSTVS A EPEKIVFH+VTD
Sbjct: 293 EYFALSPEERQLPNQQRVHDADLYHYAVFSDNVLACAVVVNSTVSSAMEPEKIVFHIVTD 352

Query: 345 SLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFY 404
           SLNLP ISMWFLLNPPGKATIQIQS+ +F  LS  YN+TLK+ NS D RYTSALNHLRFY
Sbjct: 353 SLNLPTISMWFLLNPPGKATIQIQSLVDFKGLSANYNSTLKQLNSRDSRYTSALNHLRFY 412

Query: 405 LPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFS 464
           LPDVFP LNK++LFDHDVVVQ DL  LW+++MKGKVIGAVDTC+E E SFRRMD FINFS
Sbjct: 413 LPDVFPQLNKIVLFDHDVVVQKDLAGLWSLNMKGKVIGAVDTCREGEPSFRRMDKFINFS 472

Query: 465 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVT 524
           DP + K+FD KACTWAFGMNLFDLQEWR+ KLTA+Y+KYLQLG+ R LWKAGSLPLGW T
Sbjct: 473 DPFVIKRFDAKACTWAFGMNLFDLQEWRRHKLTALYNKYLQLGHTRQLWKAGSLPLGWAT 532

Query: 525 FYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFIN 584
           FY  T+ LD+RWH LGLG+++GV    +EQAAV+HYDGVMKPWL+IGI KYK YW+K IN
Sbjct: 533 FYNRTVILDRRWHKLGLGHEAGVGHDGVEQAAVLHYDGVMKPWLDIGIGKYKSYWSKHIN 592

Query: 585 YDHPFLQRCNLH 596
           YDHP+LQ+CN+H
Sbjct: 593 YDHPYLQQCNIH 604

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225437237\|ref\|XP_002282102.1\| PREDICTED: probable galacturonosyltransferase 6 [Vitis vinifera] gi\|297735505\|emb\|CBI17945.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255559941\|ref\|XP_002520989.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi\|223539826\|gb\|EEF41406.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297843472\|ref\|XP_002889617.1\| hypothetical protein ARALYDRAFT_470701 [Arabidopsis lyrata subsp. lyrata] gi\|297335459\|gb\|EFH65876.1\| hypothetical protein ARALYDRAFT_470701 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356504981\|ref\|XP_003521271.1\| PREDICTED: probable galacturonosyltransferase 6-like [Glycine max]	Back alignment and taxonomy information

>gi|18390688|ref|NP_563771.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|75191689|sp|Q9M9Y5.1|GAUT6_ARATH RecName: Full=Probable galacturonosyltransferase 6 gi|7523701|gb|AAF63140.1|AC011001_10 Unknown protein [Arabidopsis thaliana] gi|15028087|gb|AAK76574.1| unknown protein [Arabidopsis thaliana] gi|20259311|gb|AAM14391.1| unknown protein [Arabidopsis thaliana] gi|332189914|gb|AEE28035.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|356570614\|ref\|XP_003553480.1\| PREDICTED: probable galacturonosyltransferase 6-like [Glycine max]	Back alignment and taxonomy information

>gi\|356502770\|ref\|XP_003520189.1\| PREDICTED: probable galacturonosyltransferase 6-like [Glycine max]	Back alignment and taxonomy information

>gi\|334182350\|ref\|NP_001184925.1\| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi\|332189915\|gb\|AEE28036.1\| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449458506\|ref\|XP_004146988.1\| PREDICTED: probable galacturonosyltransferase 6-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		597
TAIR\|locus:504955915		610	LGT5 "los glycosyltransferase	0.993	0.972	0.576	8.5e-184
TAIR\|locus:2160957		616	GAUT4 "galacturonosyltransfera	0.675	0.654	0.367	4.3e-143
TAIR\|locus:2098836		673	GAUT1 "galacturonosyltransfera	0.356	0.316	0.552	1.8e-131
TAIR\|locus:2121753		680	GAUT3 "galacturonosyltransfera	0.340	0.298	0.577	1.4e-118
TAIR\|locus:2027453		537	GAUT11 "galacturonosyltransfer	0.348	0.387	0.526	1e-92
TAIR\|locus:2074572		561	GAUT9 "galacturonosyltransfera	0.378	0.402	0.502	2.7e-88
TAIR\|locus:2039934		528	GAUT2 "galacturonosyltransfera	0.706	0.799	0.385	3.1e-83
TAIR\|locus:2180947		532	GAUT14 "galacturonosyltransfer	0.371	0.417	0.460	2.5e-81
TAIR\|locus:2102082		533	GAUT13 "galacturonosyltransfer	0.351	0.393	0.467	2.5e-81
TAIR\|locus:2064163		619	GAUT7 "AT2G38650" [Arabidopsis	0.964	0.930	0.319	3.4e-77

TAIR\|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1783 (632.7 bits), Expect = 8.5e-184, P = 8.5e-184
 Identities = 353/612 (57%), Positives = 446/612 (72%)

Query:     1 MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAEN-IRLN 59
             MNQVRRWQRI IL+LL +SV+AP++FVSNRLK  TS+ R +F EELS    + E+ +RL 
Sbjct:     1 MNQVRRWQRILILSLLLLSVLAPIVFVSNRLKSITSVDRGEFIEELSDITDKTEDELRLT 60

Query:    60 AIEQEADEGLKEPKLVVYKDEDLGSLV-SYSTSTESDTKQSQYAGDTNILE--NNGTDEG 116
             AIEQ+ +EGLKEPK ++ +D D  S+V S S+   +DT QS      N L   + G +  
Sbjct:    61 AIEQD-EEGLKEPKRIL-QDRDFNSVVLSNSSDKSNDTVQSNEGDQKNFLSEVDKGNNHK 118

Query:   117 KEENKKMKQKTASSGSR-----GKD-QTNQAGARRSP------NVQASLLRVSDEKIKEM 164
              +E + + QKT  S +       +D Q N     R P      N +  L R +DE++KE+
Sbjct:   119 PKEEQAVSQKTTVSSNAEVKISARDIQLNHKTEFRPPSSKSEKNTRVQLERATDERVKEI 178

Query:   165 KDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEAT 224
             +D++I+A+AYLN A PG+NS +VKEL++R KE+ERA G  TKD  L + +  R+  ME  
Sbjct:   179 RDKIIQAKAYLNLALPGNNSQIVKELRVRTKELERATGDTTKDKYLPKSSPNRLKAMEVA 238

Query:   225 LDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTA 284
             L K S  + +C A+ATKL+AMTY  EE+ R QK QA YL+QLA+RTTPKGLHCLSM+LT 
Sbjct:   239 LYKVSRAFHNCPAIATKLQAMTYKTEEQARAQKKQAAYLMQLAARTTPKGLHCLSMRLTT 298

Query:   285 EYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTD 344
             EYF L  E+R L  QQ  ++PDL+HY VFSDNVLA +VVVNST+S +KEP+KIVFHVVTD
Sbjct:   299 EYFTLDHEKRQLL-QQSYNDPDLYHYVVFSDNVLASSVVVNSTISSSKEPDKIVFHVVTD 357

Query:   345 SLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFY 404
             SLN PAISMWFLLNP G+A+IQI +ID  N L   +   L K+NS DPR  SALNH RFY
Sbjct:   358 SLNYPAISMWFLLNPSGRASIQILNIDEMNVLPLYHAELLMKQNSSDPRIISALNHARFY 417

Query:   405 LPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFS 464
             LPD+FP LNK++LFDHDVVVQ DL RLW++DM GKV+GAV+TC E + S+R MD FINFS
Sbjct:   418 LPDIFPGLNKIVLFDHDVVVQRDLTRLWSLDMTGKVVGAVETCLEGDPSYRSMDSFINFS 477

Query:   465 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVT 524
             D  +++KFD KACTWAFGMNLFDL+EWR+++LT+VY KY  LG K  LWKAG LP+GW+T
Sbjct:   478 DAWVSQKFDPKACTWAFGMNLFDLEEWRRQELTSVYLKYFDLGVKGHLWKAGGLPVGWLT 537

Query:   525 FYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFIN 584
             F+  T  L+KRW+V GLG++SG+   DIEQAAVIHYDG+MKPWL+IGI KYK YW   + 
Sbjct:   538 FFGQTFPLEKRWNVGGLGHESGLRASDIEQAAVIHYDGIMKPWLDIGIDKYKRYWNIHVP 597

Query:   585 YDHPFLQRCNLH 596
             Y HP LQRCN+H
Sbjct:   598 YHHPHLQRCNIH 609

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS

GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS

TAIR\|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2180947 GAUT14 "galacturonosyltransferase 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2064163 GAUT7 "AT2G38650" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M9Y5	GAUT6_ARATH	2, ., 4, ., 1, ., -	0.5953	0.9648	0.9779	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		597
PLN02718		603	PLN02718, PLN02718, Probable galacturonosyltransfe	0.0
PLN02829		639	PLN02829, PLN02829, Probable galacturonosyltransfe	0.0
PLN02910		657	PLN02910, PLN02910, polygalacturonate 4-alpha-gala	1e-173
PLN02742		534	PLN02742, PLN02742, Probable galacturonosyltransfe	1e-149
PLN02523		559	PLN02523, PLN02523, galacturonosyltransferase	1e-126
PLN02769		629	PLN02769, PLN02769, Probable galacturonosyltransfe	1e-121
PLN02870		533	PLN02870, PLN02870, Probable galacturonosyltransfe	1e-104
PLN02867		535	PLN02867, PLN02867, Probable galacturonosyltransfe	9e-96
PLN02659		534	PLN02659, PLN02659, Probable galacturonosyltransfe	2e-95
cd06429		257	cd06429, GT8_like_1, GT8_like_1 represents a subfa	4e-93
pfam01501		248	pfam01501, Glyco_transf_8, Glycosyl transferase fa	1e-55
cd04194		248	cd04194, GT8_A4GalT_like, A4GalT_like proteins cat	7e-17
COG1442		325	COG1442, RfaJ, Lipopolysaccharide biosynthesis pro	1e-10
cd00505		246	cd00505, Glyco_transf_8, Members of glycosyltransf	5e-10
cd06431		280	cd06431, GT8_LARGE_C, LARGE catalytic domain has c	0.001

>gnl\|CDD\|178320 PLN02718, PLN02718, Probable galacturonosyltransferase	Back alignment and domain information

 Score = 1010 bits (2613), Expect = 0.0
 Identities = 408/609 (66%), Positives = 486/609 (79%), Gaps = 20/609 (3%)

Query: 1   MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNA 60
           M QVRRWQRI IL+LLS+SV AP+IFVSNRLK  T +GR +F EELST ++R +++RL+A
Sbjct: 1   MKQVRRWQRILILSLLSLSVFAPLIFVSNRLKSITPVGRKEFIEELSTIRYRTDDLRLSA 60

Query: 61  IEQEADEGLKEPKLVVYKDEDLGSLVSYSTSTES-DTKQSQYAGDTNILENNGTDEGKEE 119
           IEQE  EGLK PKLV+Y+D D  S+VSY++S ++ D+ +S+  G  N        + KEE
Sbjct: 61  IEQEEGEGLKGPKLVIYQDGDFNSVVSYNSSDKNNDSLESEVDGGNN-------HKPKEE 113

Query: 120 NKKMKQKTASSGSRG------------KDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQ 167
             ++ QKT  S S              K Q N    +   N +    R +DEK+KE++D+
Sbjct: 114 QAQVSQKTTVSSSEEVQISARDIQLNHKTQFNPPTVKHEKNTRVQPRRATDEKVKEIRDK 173

Query: 168 VIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDK 227
           +I+A+AYLN APPGSNS LVKEL+LR KE+ERAVG ATKD DLS+ A +RM  ME TL K
Sbjct: 174 IIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYK 233

Query: 228 ASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYF 287
           AS V+P+C A+ATKLRAMTYN EE+VR QKNQA YL+QLA+RTTPKGLHCLSM+LTAEYF
Sbjct: 234 ASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYF 293

Query: 288 ALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLN 347
           AL PE+R LPNQQ  ++PDL+HY VFSDNVLAC+VVVNST+S +KEPEKIVFHVVTDSLN
Sbjct: 294 ALDPEKRQLPNQQRYNDPDLYHYVVFSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLN 353

Query: 348 LPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPD 407
            PAISMWFLLNPPGKATIQI +ID+ N L   YN+ L K+NSHDPRY SALNH RFYLPD
Sbjct: 354 YPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQNSHDPRYISALNHARFYLPD 413

Query: 408 VFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPL 467
           +FP LNK++LFDHDVVVQ DL RLW++DMKGKV+GAV+TC E E SFR MD FINFSDP 
Sbjct: 414 IFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPW 473

Query: 468 IAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYK 527
           +AKKFD KACTWAFGMNLFDL+EWR++KLT+VYHKYLQLG KRPLWKAGSLP+GW+TFY 
Sbjct: 474 VAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLWKAGSLPIGWLTFYN 533

Query: 528 HTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDH 587
            T+ALDKRWHVLGLG++SGV   DIEQAAVIHYDGVMKPWL+IGI KYK YW   + Y H
Sbjct: 534 QTVALDKRWHVLGLGHESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHH 593

Query: 588 PFLQRCNLH 596
           P+LQ+CN+H
Sbjct: 594 PYLQQCNIH 602

Length = 603

>gnl\|CDD\|215443 PLN02829, PLN02829, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215395 PLN02742, PLN02742, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215286 PLN02523, PLN02523, galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215412 PLN02769, PLN02769, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215468 PLN02870, PLN02870, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178458 PLN02867, PLN02867, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215356 PLN02659, PLN02659, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>gnl\|CDD\|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8	Back alignment and domain information

>gnl\|CDD\|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>gnl\|CDD\|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>gnl\|CDD\|133053 cd06431, GT8_LARGE_C, LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		597
PLN02829		639	Probable galacturonosyltransferase	100.0
PLN02718		603	Probable galacturonosyltransferase	100.0
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	100.0
PLN02769		629	Probable galacturonosyltransferase	100.0
PLN02742		534	Probable galacturonosyltransferase	100.0
PLN02523		559	galacturonosyltransferase	100.0
PLN02870		533	Probable galacturonosyltransferase	100.0
PLN02659		534	Probable galacturonosyltransferase	100.0
PLN02867		535	Probable galacturonosyltransferase	100.0
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	100.0
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	100.0
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	100.0
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	100.0
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	100.0
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	100.0
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	100.0
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	100.0
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	100.0
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	99.94
PLN00176		333	galactinol synthase	99.92
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	99.77
KOG1879		1470	consensus UDP-glucose:glycoprotein glucosyltransfe	99.15
COG5597		368	Alpha-N-acetylglucosamine transferase [Cell envelo	98.06
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	95.22
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	94.02
PF11051		271	Mannosyl_trans3: Mannosyltransferase putative; Int	92.87
PF05637		239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	86.47
cd02514		334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	82.41

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

Probab=100.00  E-value=8.1e-156  Score=1268.39  Aligned_cols=585  Identities=47%  Similarity=0.875  Sum_probs=532.7

Q ss_pred             hhHHHHHHHHHHHHHHhhcceEEEecccCc-cccccccchhhhhcccccccccccccccccccccccCCCcEEeecCCCc
Q 007588            4 VRRWQRISILALLSVSVIAPVIFVSNRLKV-FTSIGRWDFAEELSTTKFRAENIRLNAIEQEADEGLKEPKLVVYKDEDL   82 (597)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (597)
                      +|||+|++||+||||||+|||+|||+||++ |||++++||+|||+++++++|+.+|||||||++++||||+||||+|+++
T Consensus         1 ~~~~~r~~~~~~l~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~p~~~~~~~~~~   80 (639)
T PLN02829          1 MRMRLRNLVLGLLLLTVLSPILLYTDRLSASFTPSSKRDFLEDVTALTLGGDASKLNVLPQESSSSLKEPIGIVYSDNSS   80 (639)
T ss_pred             CcHHHHHHHHHHHHHHHhhceeEEecccccccCCcchhhhhHHHHhhccCccchhcccccccccccccCceeEEeecccc
Confidence            589999999999999999999999999998 8999999999999999999999999999999999999999999999987


Q ss_pred             cccccc---------------cccCCCccccccccCccccccC---CCCcchhhhhh------------hhhhhhcccCC
Q 007588           83 GSLVSY---------------STSTESDTKQSQYAGDTNILEN---NGTDEGKEENK------------KMKQKTASSGS  132 (597)
Q Consensus        83 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------------~~~~~~~~~~~  132 (597)
                      +.....               -.+.++|+++|+.++.|+|+-.   +-.+...+.+.            +.+|...++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (639)
T PLN02829         81 KTIEPDSQDLLLDKRGEHKARVLSATDDDTHSQTDDIIKQVTQKAGQDDSDQQEKNSQSQSASQAESLEHVQQSAQTSEK  160 (639)
T ss_pred             ccccccccccccccccchhhhhccccccccccccchhHHHhhhcccccccccccccccccccccccchhhhhhhhccccc
Confidence            743222               1344689999999999999831   11111111111            11222211111


Q ss_pred             CCcccccc-ccccCCCCcccccccCcHHHHHHhhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHhhcccCCCCccc
Q 007588          133 RGKDQTNQ-AGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLS  211 (597)
Q Consensus       133 ~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~~~~~~  211 (597)
                      .+.  +.. .+.++.|..+   .+++|++||+|||||||||||++|||+++|++|+|||+++|||+||+||+|+.|+|||
T Consensus       161 ~~~--~~~~~~~~~~~~~~---~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp  235 (639)
T PLN02829        161 VDE--KEPLLTKTDKQTDQ---TVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLP  235 (639)
T ss_pred             ccc--cccccccccccccc---ccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence            111  111 2222333333   3679999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhccCCcccchhhhHhchHhhhcCc
Q 007588          212 RRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQP  291 (597)
Q Consensus       212 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rlt~e~~~~~~  291 (597)
                      +++.++|++|+++|++||++++||+++++|||||++++||++++||+|++|++||||+|+|||||||+||||.|||.+.+
T Consensus       236 ~~~~~~~~~m~~~i~~ak~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~  315 (639)
T PLN02829        236 KNANEKLKAMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNS  315 (639)
T ss_pred             hhHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeEEEEeCcchhHHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEcc
Q 007588          292 EERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSID  371 (597)
Q Consensus       292 ~~~~~~~~~~l~d~~~ihIv~~sDn~laasVvI~Slv~Na~~p~~i~FHIvtd~is~e~~~~wf~l~~~~~~~Ie~i~v~  371 (597)
                      ..+++|+.++++||+.+|||++|||+||++|||+|++.|+++|++++||||||.+|+.+|++||.+|++++++|+|.+++
T Consensus       316 ~~~~~p~~~~l~dp~l~Hy~ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie  395 (639)
T PLN02829        316 SEQQFPNQEKLEDPQLYHYALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIE  395 (639)
T ss_pred             hhccCCChhhccCCccceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehh
Confidence            98888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccchhhhhhhhccCC---------------------CCCCCcchhhHHHhhhcccccCCCeEEEEecCeeeccCcHH
Q 007588          372 NFNWLSTKYNATLKKENS---------------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGR  430 (597)
Q Consensus       372 ~f~~l~~~~~~vlk~l~s---------------------~~~~~~S~~~y~Rf~IPeLLPeldKVLYLD~DvVVq~DLse  430 (597)
                      +|+|++.+|+|+++++++                     ++|+|+|+++|+|||||++||+++||||||+||||++||++
T Consensus       396 ~f~wln~~~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLse  475 (639)
T PLN02829        396 EFTWLNSSYSPVLKQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTG  475 (639)
T ss_pred             hcccccccccHHHHHhhhhhhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHH
Confidence            999999999999998874                     56899999999999999999999999999999999999999


Q ss_pred             hhccCCCCCEEEEecccccchhhhhhhhcccCCCChhhhhccCCCCCceecceEEeecHHHHHhhHHHHHHHHHHHcCCC
Q 007588          431 LWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKR  510 (597)
Q Consensus       431 Lw~iDL~GkviAAV~D~~~~~~~~~r~~~~Lnfs~P~i~~~fd~~~~yFNSGVmLiNL~kWR~~nitek~~~~l~~~~~~  510 (597)
                      ||++||+|+++|||+||..   .++++..+++|++|.+..+|+++.||||+|||||||++||+++++++|+.|++.+.++
T Consensus       476 Lw~iDL~gkviAAVedc~~---~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r  552 (639)
T PLN02829        476 LWSIDLKGNVNGAVETCGE---SFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDR  552 (639)
T ss_pred             HHhCCCCCceEEEeccchh---hhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCC
Confidence            9999999999999999986   6788999999999999999999999999999999999999999999999999998888


Q ss_pred             CCCCCCCcchhhhhhccceeEecccccccccCCCCCCcccccCCCEEEEecCCCCCcccCCccccHHHHHHHhccCCccc
Q 007588          511 PLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFL  590 (597)
Q Consensus       511 ~l~d~~~LpilNi~F~g~i~~Ld~~WN~~~lgy~~~i~~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~~~pfl  590 (597)
                      .+|++|+||+++++|+|++++||++||++|+||++.+..+.+++|+||||+|++|||+..++++|+++|.+|++++++||
T Consensus       553 ~L~dlgaLPp~Ll~F~g~i~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl  632 (639)
T PLN02829        553 QLWKLGTLPPGLITFWKRTYPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYL  632 (639)
T ss_pred             ccccccCCChHHHHhcCceEecChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHH
Confidence            89999999999999999999999999999999988777788999999999999999999999999999999999999999


Q ss_pred             cccccC
Q 007588          591 QRCNLH  596 (597)
Q Consensus       591 ~~Cn~~  596 (597)
                      ++||||
T Consensus       633 ~~Cni~  638 (639)
T PLN02829        633 RECNIN  638 (639)
T ss_pred             HhCCCC
Confidence            999997

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose	Back alignment and domain information

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif	Back alignment and domain information

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		597
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	4e-50
3tzt_A		276	Glycosyl transferase family 8; structural genomics	1e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311	Back alignment and structure

 Score =  174 bits (444), Expect = 4e-50
 Identities = 50/293 (17%), Positives = 95/293 (32%), Gaps = 41/293 (13%)

Query: 313 FSDN-VLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSID 371
             DN      V   S  +   +  +I FHV+   ++    +        G   I+   ++
Sbjct: 7   ADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN 65

Query: 372 NFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRL 431
             ++               + R+ S   + R  L +     +KVL  D DV+V+  L  L
Sbjct: 66  PEDF----------AGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPL 115

Query: 432 WNIDMKGKVIGAV-DTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQE 490
           W+ D+    +GA  D   E           I  +D             +  G+ L +L++
Sbjct: 116 WDTDLGDNWLGASIDLFVE---RQEGYKQKIGMADG---------EYYFNAGVLLINLKK 163

Query: 491 WRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGV--- 547
           WR+  +  +  ++++       ++   +  G   F       + R++ +   Y       
Sbjct: 164 WRRHDIFKMSSEWVEQYKDVMQYQDQDILNG--LFKGGVCYANSRFNFMPTNYAFMANWF 221

Query: 548 -----------ARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPF 589
                          +   AV HY G  KPW     A     +T+        
Sbjct: 222 ASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTTV 274

PyMOL of 1g9r

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		597
3tzt_A		276	Glycosyl transferase family 8; structural genomics	100.0
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	100.0
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	99.94
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	99.92

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Probab=100.00  E-value=9e-47  Score=386.26  Aligned_cols=258  Identities=13%  Similarity=0.138  Sum_probs=192.8

Q ss_pred             ceeEEEEeCcch--hHHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCcccchhhhhhh
Q 007588          307 LHHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL  384 (597)
Q Consensus       307 ~ihIv~~sDn~l--aasVvI~Slv~Na~~p~~i~FHIvtd~is~e~~~~wf~l~~~~~~~Ie~i~v~~f~~l~~~~~~vl  384 (597)
                      .||||+++|+.+  +++|+|+|++.|+++ +.++|||++++++.+.++.+..+....+++|+++.+++ .++.       
T Consensus         5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~~-------   75 (276)
T 3tzt_A            5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLFS-------   75 (276)
T ss_dssp             CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred             eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHHh-------
Confidence            499999999865  599999999999985 57999999999999887776665445678999998874 1111       


Q ss_pred             hccCCCCCCCcchhhHHHhhhcccccC-CCeEEEEecCeeeccCcHHhhccCCCCCEEEEecccccchhhhhhhhcccCC
Q 007588          385 KKENSHDPRYTSALNHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF  463 (597)
Q Consensus       385 k~l~s~~~~~~S~~~y~Rf~IPeLLPe-ldKVLYLD~DvVVq~DLseLw~iDL~GkviAAV~D~~~~~~~~~r~~~~Lnf  463 (597)
                       ..  ....++|..+|+||++|++||+ ++||||||+|+||++||++||++|++|+++|||+||....  +.+....+  
T Consensus        76 -~~--~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~--~~~~~~~~--  148 (276)
T 3tzt_A           76 -FA--KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTD--MANNVNRI--  148 (276)
T ss_dssp             -----------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC-----------------
T ss_pred             -cC--ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccch--HHHHHHHh--
Confidence             11  1235789999999999999995 9999999999999999999999999999999999997531  11111112  


Q ss_pred             CChhhhhccCCCCCceecceEEeecHHHHHhhHHHHHHHHHHHcCCCCCCCCCCcchhhhhhccceeEecc-cccccccC
Q 007588          464 SDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDK-RWHVLGLG  542 (597)
Q Consensus       464 s~P~i~~~fd~~~~yFNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~d~~~LpilNi~F~g~i~~Ld~-~WN~~~lg  542 (597)
                             .++...+|||||||||||++||+.++++++++|++++.....+  +||+++|.+|.|++++||+ +||+++ |
T Consensus       149 -------~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~--~DQd~LN~~f~~~~~~Lp~~~wN~~~-~  218 (276)
T 3tzt_A          149 -------RLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLL--PDQDILNAMYGDRIYPLDDLIYNYDA-R  218 (276)
T ss_dssp             --------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHHGGGEEEEEHHHHSEET-T
T ss_pred             -------cCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccC--CChhHHHHHHhCCEEECCchheeeec-c
Confidence                   2334469999999999999999999999999999987644333  4455679999999999999 999996 3


Q ss_pred             CCCC--------Cc-ccccCCCEEEEecCCCCCcccCCccccHHHHHHHhccCCccc
Q 007588          543 YDSG--------VA-RRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFL  590 (597)
Q Consensus       543 y~~~--------i~-~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~~~pfl  590 (597)
                      +...        .. ....++|+||||+|+.|||+..+.++|+++||+|++...+||
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~  275 (276)
T 3tzt_A          219 NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL  275 (276)
T ss_dssp             CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred             cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence            2110        01 124568999999999999999999999999999999887775

PyMOL of 3tzt

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		597
d1ga8a_		282	c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri	6e-29
d1ll2a_		263	c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun	2e-05

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score =  114 bits (285), Expect = 6e-29
 Identities = 51/286 (17%), Positives = 94/286 (32%), Gaps = 37/286 (12%)

Query: 313 FSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDN 372
             DN  A   V   +V  A    +I FHV+   ++    +        G   I+   ++ 
Sbjct: 7   ADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNP 66

Query: 373 FNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLW 432
            ++     N           R+ S   + R  L +     +KVL  D DV+V+  L  LW
Sbjct: 67  EDFAGFPLN----------IRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLW 116

Query: 433 NIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWR 492
           + D+    +GA                 I  +D             +  G+ L +L++WR
Sbjct: 117 DTDLGDNWLGASIDLFVE--RQEGYKQKIGMADGE---------YYFNAGVLLINLKKWR 165

Query: 493 KRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVA---- 548
           +  +  +  ++++       ++   +  G   F       + R++ +   Y         
Sbjct: 166 RHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKGGVCYANSRFNFMPTNYAFMANWFAS 223

Query: 549 ----------RRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFIN 584
                        +   AV HY G  KPW     A     +T+   
Sbjct: 224 RHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAG 269

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		597
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	100.0
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	99.93
d1o7qa_		287	alpha-1,3-galactosyltransferase catalytic domain {	95.23
d1lzia_		283	Glycosyltransferase A catalytic domain {Human (Hom	93.29
d1fo8a_		343	N-acetylglucosaminyltransferase I {Rabbit (Oryctol	82.55

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=1.6e-43  Score=357.10  Aligned_cols=255  Identities=18%  Similarity=0.198  Sum_probs=204.8

Q ss_pred             eeEEEEeCcch--hHHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCcccchhhhhhhh
Q 007588          308 HHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLK  385 (597)
Q Consensus       308 ihIv~~sDn~l--aasVvI~Slv~Na~~p~~i~FHIvtd~is~e~~~~wf~l~~~~~~~Ie~i~v~~f~~l~~~~~~vlk  385 (597)
                      ||||+|+|+.+  +++|+|+|++.|+.+ ..++|||++++++.+....+.......+..++++.++.-.+         .
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~---------~   70 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDF---------A   70 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGG---------T
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHh---------c
Confidence            69999999865  599999999998765 57999999999999988777665555678899998864211         1


Q ss_pred             ccCCCCCCCcchhhHHHhhhcccccCCCeEEEEecCeeeccCcHHhhccCCCCCEEEEecccccchhhhhhhhcccCCCC
Q 007588          386 KENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSD  465 (597)
Q Consensus       386 ~l~s~~~~~~S~~~y~Rf~IPeLLPeldKVLYLD~DvVVq~DLseLw~iDL~GkviAAV~D~~~~~~~~~r~~~~Lnfs~  465 (597)
                      ... ...+++|.++|+||++|++||+++||||||+|+||.+||++||++|++|+++|||.|+...  ....+...++   
T Consensus        71 ~~~-~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~--~~~~~~~~~~---  144 (282)
T d1ga8a_          71 GFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVE--RQEGYKQKIG---  144 (282)
T ss_dssp             TSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHH--TSTTHHHHTT---
T ss_pred             ccc-ccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhh--hhhhhHHHhC---
Confidence            111 2346789999999999999999999999999999999999999999999999999997642  1112222233   


Q ss_pred             hhhhhccCCCCCceecceEEeecHHHHHhhHHHHHHHHHHHcCCCCCCCCCCcchhhhhhccceeEecccccccccCCCC
Q 007588          466 PLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDS  545 (597)
Q Consensus       466 P~i~~~fd~~~~yFNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~d~~~LpilNi~F~g~i~~Ld~~WN~~~lgy~~  545 (597)
                            +.++.+||||||||||+++||+.+++++++++++++.....+  +||+++|.+|.|++..||.+||++..+|..
T Consensus       145 ------~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~~~--~DQd~LN~~f~~~~~~L~~~~N~~~~~~~~  216 (282)
T d1ga8a_         145 ------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQY--QDQDILNGLFKGGVCYANSRFNFMPTNYAF  216 (282)
T ss_dssp             ------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSS--THHHHHHHHHTTSEEEECGGGSBCHHHHHT
T ss_pred             ------CCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCccc--CchhHHHHHhcCCEEeCCHHHeeccccccc
Confidence                  335689999999999999999999999999999997654333  345567999999999999999998543211


Q ss_pred             C--------Cc------ccccCCCEEEEecCCCCCcccCCccccHHHHHHHhccC
Q 007588          546 G--------VA------RRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYD  586 (597)
Q Consensus       546 ~--------i~------~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~~  586 (597)
                      .        ..      .+...+++||||+|+.|||+..+.+++...|++|++..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~~~~~~~~~~~  271 (282)
T d1ga8a_         217 MANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSL  271 (282)
T ss_dssp             CC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTTHHHHHHHTTC
T ss_pred             cccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhHHHHHHHHHhh
Confidence            0        00      13457899999999999999999889999999999753

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure