Citrus Sinensis ID: 007594

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------

MSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC

ccccccEEEEEEccccccccccccccccccccEEEccccccccccEEEEEEEcccccccEEEEEEEEEcccccccccHHHHHHHHHHHHHcccccEEccEEEEEEEcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccEEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEcccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccc

ccccccEEEEEEcccccHHHHHcccEEEEEEEEEEcccccccccEEEEEEEEcccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHccHHcccEEEEEccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHEEEEEcccccccEEEEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccc

msnlgaqvnnhkfhpqlnqfhplhffsgpdsgvmqenstrslygintvgiiraprgdgkeAIVLVTpynavkggVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVadsqygeyapvaawlrdyhtpafsnldslntetchvgnnnfeskisygIRRSGTMAAALVLGVAygnenedtLGIYaeasngqmpnldlINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKtlnpdwklgISAADYVEGAATLASSLYHqalgvptgphgafrdyQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKtldlnptsekdksatsneLGSVLQSWKWLNSVKTVFVVHFWGATVSLLpyfisqipdsdpttnFSVWILLSILSLEILRWILVspsshiyglpqgewatlksaTISSFFIGLGLMSVINFATAEIGALLMVPMALMahplkldvRGQSLRSILRMICNLVLgvisfppatfFVFKGViegfsginagdFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC

MSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGiiraprgdgkEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLnptsekdksatsnELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC

MSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFallvaplpvvaaSLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVwillsilsleilrwilVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC

*****************NQFHPLHFFS************RSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDL***************GSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLH**

******Q*NNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFS***************NFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDL***************GSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC

********NNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNP*************GSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC

**NLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGN*NFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLD*******************LQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHPC

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		597	2.2.26 [Sep-21-2011]
Q9WTK3		621	Glycosylphosphatidylinosi	yes	no	0.680	0.653	0.264	5e-27
O43292		621	Glycosylphosphatidylinosi	yes	no	0.683	0.657	0.259	2e-24
Q9US48		581	GPI transamidase componen	yes	no	0.430	0.442	0.282	2e-22
P39012		614	GPI transamidase componen	yes	no	0.410	0.399	0.290	2e-18

>sp\|Q9WTK3\|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein OS=Mus musculus GN=Gpaa1 PE=1 SV=3	Back alignment and function desciption

 Score =  122 bits (307), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 206/473 (43%), Gaps = 67/473 (14%)

Query: 44  GINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIW 103
           G N  GI+RAPR    E++VL  P          + ++G+  ++ +      + AKDII+
Sbjct: 126 GTNVYGILRAPRSASTESLVLTVPCGP---DATNSQAVGLLLALAAHFRGQIYWAKDIIF 182

Query: 104 LVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAA 163
           LV D    +     AWL  YH    + + S   +                  R+G + AA
Sbjct: 183 LVTDH---DLLGTEAWLEAYHDINVTGIQSSPLQG-----------------RAGAIQAA 222

Query: 164 LVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKW 223
           + L ++  ++   +L +  E  NGQ+PNLDL+N+       + GL   ++          
Sbjct: 223 VALELS--SDVVTSLDVTVEGLNGQLPNLDLLNLFQTFC-QKGGLLCTLQ---------- 269

Query: 224 VKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDY 283
                      GK+      DW    S    ++G  TL   +  QA G P GPHG F  Y
Sbjct: 270 -----------GKLQPQ---DWT---SLEGPLQGLQTLLLMVLRQASGRPHGPHGLFLRY 312

Query: 284 QVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSK 343
            V+A+TL        +   +    L   G+ +EG+ R +N+LLE+ HQSFF YLL + S+
Sbjct: 313 GVEALTLR-----GINSFRQYKYDLATVGKALEGMFRKLNHLLERLHQSFFFYLLPALSR 367

Query: 344 FVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSV 403
           FVS+G+YM A   L+  L + A  L+ +        E+   A S     +      L S+
Sbjct: 368 FVSIGLYMPATGFLLLVLGLKALELWMQLHQAGVNPEEAGKAPSPGTPLLPTQGVGLASL 427

Query: 404 KTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSV----WILLSILSLEILRWILVSPSSH 459
               ++      + L  YF+  +     T +F V     ++L++L++ +    L   +  
Sbjct: 428 TAPLLI---SQAMGLALYFLPVLGQHLATQHFPVAEAEAVVLTLLAIYVAGLALPHNTHR 484

Query: 460 IYG--LPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHP 510
           +    +P   W  LK   +    + LG ++++NF+   + A  MVP A +A P
Sbjct: 485 VVNSQVPDRGWMALKLVALIYLALQLGCIALLNFSLGFLLAATMVPAAALAKP 537

Essential for GPI-anchoring of precursor proteins but not for GPI synthesis. Acts before or during formation of the carbonyl intermediate.
Mus musculus (taxid: 10090)

>sp\|O43292\|GPAA1_HUMAN Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo sapiens GN=GPAA1 PE=1 SV=3	Back alignment and function description

>sp\|Q9US48\|GAA1_SCHPO GPI transamidase component gaa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gaa1 PE=3 SV=1	Back alignment and function description

>sp\|P39012\|GAA1_YEAST GPI transamidase component GAA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAA1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		597
224060139		716	predicted protein [Populus trichocarpa]	1.0	0.833	0.681	0.0
356511698		705	PREDICTED: glycosylphosphatidylinositol	0.984	0.834	0.651	0.0
357520045		701	GPI transamidase component gaa1 [Medicag	0.991	0.844	0.648	0.0
356573335		707	PREDICTED: glycosylphosphatidylinositol	0.989	0.835	0.643	0.0
359488887		701	PREDICTED: glycosylphosphatidylinositol	0.974	0.830	0.654	0.0
296087611		690	unnamed protein product [Vitis vinifera]	0.964	0.834	0.658	0.0
449483788		714	PREDICTED: glycosylphosphatidylinositol	1.0	0.836	0.648	0.0
449450074		714	PREDICTED: LOW QUALITY PROTEIN: glycosyl	1.0	0.836	0.647	0.0
147783377		1027	hypothetical protein VITISV_026168 [Viti	0.943	0.548	0.648	0.0
297812099		699	hypothetical protein ARALYDRAFT_488797 [	0.971	0.829	0.596	0.0

>gi\|224060139\|ref\|XP_002300056.1\| predicted protein [Populus trichocarpa] gi\|222847314\|gb\|EEE84861.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/613 (68%), Positives = 490/613 (79%), Gaps = 16/613 (2%)

Query: 1   MSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKE 60
           MS+LGA+V+ HKFH + NQFHPLHFFS PDS    +N + S +G+NTVGIIRAPRGDGKE
Sbjct: 104 MSDLGAEVSYHKFHHKPNQFHPLHFFSSPDSTSSVKNFSCSAHGVNTVGIIRAPRGDGKE 163

Query: 61  AIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWL 120
           AIVLVTPY   K G  ETLSL IAY+VFSLL+RVTWLAKDIIW VADSQYGEYAPV AWL
Sbjct: 164 AIVLVTPYKFGKSGAAETLSLSIAYTVFSLLSRVTWLAKDIIWFVADSQYGEYAPVEAWL 223

Query: 121 RDYHTPAFSNLDSLNTETCHVGNNNF--------ESKISYGIRRSGTMAAALVLGVAYGN 172
           RDYHTP F+ L +LN +TC   ++ +        + KIS G RR+GTMAAAL+L VA  N
Sbjct: 224 RDYHTPVFTGLGTLNADTCVKIDDLYVFEQKSIVQRKISDGFRRAGTMAAALILKVADRN 283

Query: 173 EN-EDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVF 231
           E  EDTL IYAEASNGQMPNLDLINIV+YLAVHRQGLRVKVE+   LL+ +W++ LGE+F
Sbjct: 284 ELLEDTLNIYAEASNGQMPNLDLINIVNYLAVHRQGLRVKVEKVLTLLDLRWLEILGEMF 343

Query: 232 ESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLE 291
           E LGK+ ++LNP WK GISAADY+EG+ATLASSLY+QALG+PTGPHGAFRD+QVDAITLE
Sbjct: 344 ELLGKVARSLNPGWKFGISAADYIEGSATLASSLYYQALGIPTGPHGAFRDFQVDAITLE 403

Query: 292 FSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYM 351
            S ++      R N+FLL GGRL+EGVIRS+NNLLEKFHQSFFLY+LTSPSKFVSVGVYM
Sbjct: 404 ISPKVFPHNKARHNEFLLRGGRLVEGVIRSINNLLEKFHQSFFLYMLTSPSKFVSVGVYM 463

Query: 352 IAFALLVAPLPVVAASLYAKT--LDLNPTSEKD--KSATSNELGSVLQSWKWLNSVKTVF 407
           IAFALLVAPLP+VAASLYA    LDL   + K    +  S+EL    +SWKWL + K VF
Sbjct: 464 IAFALLVAPLPLVAASLYADANQLDLGVKNTKSTPTATASDELDITFRSWKWLYAAKEVF 523

Query: 408 VVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHI-YGLPQ- 465
           ++H WGA VSLLPYFI QIP+  PT++  +W+ LS+LSL IL  I+ SPS+H+    P+ 
Sbjct: 524 LIHVWGAAVSLLPYFICQIPNCSPTSSSVIWVFLSMLSLLILYLIVGSPSTHVSISQPEE 583

Query: 466 -GEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSIL 524
            GEWA LKSATIS+ FIGL +MSV+NFA AEIGALL+VPM LMA PLKLD++   LRS L
Sbjct: 584 KGEWAILKSATISAVFIGLLVMSVVNFAAAEIGALLLVPMCLMAQPLKLDMKAGKLRSFL 643

Query: 525 RMICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESLWAWNSATYLYIGMVHLP 584
           R+ICN+VLG ++FPPA FFV K + EGF  IN GDFWNW+ESLWAWNSATY+YIGMVHLP
Sbjct: 644 RIICNVVLGFVAFPPAAFFVVKTIFEGFDSINMGDFWNWMESLWAWNSATYIYIGMVHLP 703

Query: 585 CWVLCVQILLHPC 597
           CWVLC+ ILLH C
Sbjct: 704 CWVLCLHILLHSC 716

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356511698\|ref\|XP_003524560.1\| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|357520045\|ref\|XP_003630311.1\| GPI transamidase component gaa1 [Medicago truncatula] gi\|355524333\|gb\|AET04787.1\| GPI transamidase component gaa1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356573335\|ref\|XP_003554817.1\| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|359488887\|ref\|XP_002274196.2\| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296087611\|emb\|CBI34867.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449483788\|ref\|XP_004156691.1\| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449450074\|ref\|XP_004142789.1\| PREDICTED: LOW QUALITY PROTEIN: glycosylphosphatidylinositol anchor attachment 1 protein-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147783377\|emb\|CAN59886.1\| hypothetical protein VITISV_026168 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297812099\|ref\|XP_002873933.1\| hypothetical protein ARALYDRAFT_488797 [Arabidopsis lyrata subsp. lyrata] gi\|297319770\|gb\|EFH50192.1\| hypothetical protein ARALYDRAFT_488797 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		597
TAIR\|locus:2182197		699	AT5G19130 "AT5G19130" [Arabido	0.966	0.825	0.582	1.2e-177
DICTYBASE\|DDB_G0287287		752	DDB_G0287287 "Glycosylphosphat	0.139	0.110	0.489	2.6e-26
FB\|FBgn0029818		674	CG3033 [Drosophila melanogaste	0.174	0.154	0.380	6e-26
MGI\|MGI:1202392		621	Gpaa1 "GPI anchor attachment p	0.489	0.470	0.277	3.1e-24
UNIPROTKB\|Q6PA87		615	gpaa1 "MGC68658 protein" [Xeno	0.524	0.508	0.240	3.3e-24
UNIPROTKB\|E2REN2		621	GPAA1 "Uncharacterized protein	0.492	0.473	0.272	1.5e-23
UNIPROTKB\|Q6AYM8		621	Gpaa1 "Glycosylphosphatidylino	0.492	0.473	0.269	1.8e-23
UNIPROTKB\|Q58CZ3		568	GPAA1 "Uncharacterized protein	0.482	0.507	0.267	2.4e-22
UNIPROTKB\|G4N7S2		606	MGG_03523 "GPI transamidase co	0.152	0.150	0.414	2.9e-22
ASPGD\|ASPL0000014407		631	AN10439 [Emericella nidulans (	0.150	0.142	0.387	2.4e-21

TAIR\|locus:2182197 AT5G19130 "AT5G19130" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 351/603 (58%), Positives = 425/603 (70%)

Query:     1 MSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKE 60
             MS++GA+V+  KFHP+ NQFHPLHFFSGPDS  + EN + + YG+N  GIIRAPRGDGKE
Sbjct:   115 MSDMGAEVSYQKFHPEGNQFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKE 174

Query:    61 AIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWL 120
             +IVLVTPY+ + GG  E LSLGI  S+FSLL+RVTWL+KDIIWLVADS+YG+Y PVAAWL
Sbjct:   175 SIVLVTPYDFINGGDYEDLSLGIVSSLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWL 234

Query:   121 RDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNEN-EDTLG 179
              +YH+P+F   D L  +  +  +N          RR+GTMAAALVL V   +E  EDTL 
Sbjct:   235 TEYHSPSFKVSDLLKCDEQNTADN---------FRRAGTMAAALVLKVDGRSEKFEDTLS 285

Query:   180 IYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVK 239
             IYAEASNGQMPNLDLIN+V+YLAVHRQG  VKVE+   LL+S W+K  GE+FE++GK+  
Sbjct:   286 IYAEASNGQMPNLDLINVVNYLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAH 345

Query:   240 TLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFD 299
              LNPDW  GI AADY+EG+ATLASSLY QALG+PTGPHGAFRDYQVDAITL+ S R   D
Sbjct:   346 MLNPDWNFGIPAADYLEGSATLASSLYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPD 405

Query:   300 RLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFXXXXX 359
                R++DF L G RL+EG IRSVNNLLEKFHQSFFLY+LTSPSKF+SVGVYMIAF     
Sbjct:   406 SKTRQHDFFLRGARLLEGTIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVA 465

Query:   360 XXXXXXXSLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLL 419
                    SLY         +    + T N      +SWKWL++ K VF +H  G  V+LL
Sbjct:   466 PLPMVAASLYID--GCKSLTNSTHNPTEN-----FKSWKWLDAAKQVFTLHLLGFIVTLL 518

Query:   420 PYFISQIPDSDPTTNFSVXXXXXXXXXXXXXXXXV---SP-SSHIYGLPQGEWATLKSAT 475
             PYFI Q+P     TN S+                +   SP SS ++G     WA LKS T
Sbjct:   519 PYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCSPFSSRLHGT---NWAILKSVT 575

Query:   476 ISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVI 535
             IS+ FIGL LMS+INFATAEIGALL+VP  LMA P+K  +R + L+S+L   C++VL  I
Sbjct:   576 ISAAFIGLCLMSIINFATAEIGALLLVPTCLMAQPIKPALRSRRLKSLLGAFCSIVLLTI 635

Query:   536 SFPPATFFVFKGVI-EGFSGIN-AGDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQIL 593
              FP   F + KG++ EG  G++  G+FW W+ESLWAW SATYLYIGMVHLPCW+LC+ IL
Sbjct:   636 GFPVMFFAISKGLLGEGLVGLSLGGEFWTWLESLWAWKSATYLYIGMVHLPCWLLCLCIL 695

Query:   594 LHP 596
              HP
Sbjct:   696 FHP 698

GO:0003923 "GPI-anchor transamidase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0042765 "GPI-anchor transamidase complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

DICTYBASE\|DDB_G0287287 DDB_G0287287 "Glycosylphosphatidylinositol anchor attachment 1 protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0029818 CG3033 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

MGI\|MGI:1202392 Gpaa1 "GPI anchor attachment protein 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6PA87 gpaa1 "MGC68658 protein" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|E2REN2 GPAA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6AYM8 Gpaa1 "Glycosylphosphatidylinositol anchor attachment protein 1 homolog (Yeast)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q58CZ3 GPAA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N7S2 MGG_03523 "GPI transamidase component GAA1" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000014407 AN10439 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		597
pfam04114		498	pfam04114, Gaa1, Gaa1-like, GPI transamidase compo	6e-48

>gnl\|CDD\|217905 pfam04114, Gaa1, Gaa1-like, GPI transamidase component	Back alignment and domain information

 Score =  174 bits (443), Expect = 6e-48
 Identities = 136/571 (23%), Positives = 224/571 (39%), Gaps = 105/571 (18%)

Query: 43  YGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDII 102
           YG N  GI+RAPRGD  E++VL  P+            + +  S+     R  + +KDII
Sbjct: 2   YGENLYGILRAPRGDSTESLVLAVPWFNSDSETNSA-GVALLLSLARFFRRWPYWSKDII 60

Query: 103 WLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAA 162
           +++ ++       + +WL  YH      +     +                  R+G++ A
Sbjct: 61  FVITEN---PRLGLRSWLEAYHDSTTPYISYTPLDL-----------------RAGSIQA 100

Query: 163 ALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSK 222
           A+VL ++   +  + + +  E  NGQ+PNLDL N+   +  H   ++             
Sbjct: 101 AVVLELSSTEDFSEYVEVSYEGLNGQLPNLDLFNLAQRITEHEGFMKYS----------- 149

Query: 223 WVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRD 282
            +        S     + L                   L   +  QA    TGPHG F  
Sbjct: 150 -LHLQPSDQHSNSGFWQRLK-----------------ILLLGILDQASSGVTGPHGLFSR 191

Query: 283 YQVDAITLEFS--LRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTS 340
           Y++DA+TL        S D        +   G+ IEG+ RS+NNLLE+FHQSFF YLL +
Sbjct: 192 YRIDALTLRMKAHGNSSHD--------ITAFGKAIEGMFRSLNNLLERFHQSFFFYLLLA 243

Query: 341 PSKFVSVGVYMIAFALLVAPLPVVA----ASLYAKTLDLNPTSEKDKSATSNELGSVLQS 396
           P +FVS+G YM +   L A   + A     +L+   + L   S     A    L S++ S
Sbjct: 244 PRRFVSIGSYMPSAVALSAAFALKALNAWINLHEANISLE--SPYGLVALLVWLVSLVIS 301

Query: 397 WK----WLNSVKTVFVVHFWGATVSLLP----YFISQIPDSDPTTNFSVWILLSILSLEI 448
           +     +L+    + +    GA+  +L      F      S    N    + LS++S   
Sbjct: 302 FVVSLAFLSIPAYLLLSTISGASCFVLLILSQKFHIIEFLSARLKN-VALLYLSLVST-- 358

Query: 449 LRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMA 508
                        GL    +A L    + +F + L ++ ++NF+   + A L VP+A   
Sbjct: 359 -------------GLLLPNFAMLLLIGLLAFPLTLVVIILLNFSLGFVTAQLSVPIATEP 405

Query: 509 HP------LKLDVRGQSLRSILRMICNLVLGVISFP--PATFF--VFKGVIEGFSGINAG 558
                     + +   +L    + +  LVL +++ P  P T F          F  +  G
Sbjct: 406 KDENERVENHMTLTPATLVQQSQKLKLLVLLILTNPFIPETPFGLFADDEFLFFDALAKG 465

Query: 559 DFWNWVESLWAWNSATYLYIGMVHLPCWVLC 589
                    W +       + +  LPCW+L 
Sbjct: 466 VSAWLDLGCWLF-----FVLCIGFLPCWLLI 491

GPI (glycosyl phosphatidyl inositol) transamidase is a multi-protein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase that adds glycosylphosphatidylinositols (GPIs) to newly synthesised proteins. Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		597
PF04114		504	Gaa1: Gaa1-like, GPI transamidase component ; Inte	100.0
KOG3566		617	consensus Glycosylphosphatidylinositol anchor atta	100.0
PRK10199		346	alkaline phosphatase isozyme conversion aminopepti	96.89
PF04389		179	Peptidase_M28: Peptidase family M28; InterPro: IPR	95.13
PF05450		234	Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri	87.81

>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins	Back alignment and domain information

Probab=100.00  E-value=3.3e-108  Score=903.41  Aligned_cols=486  Identities=38%  Similarity=0.565  Sum_probs=364.6

Q ss_pred             ecceEEEEEcCCCCCCcceEEEEEEeccCCCCccchhhHHHHHHHHHHHhcCcccccceEEEeeCCCCCCchhHHHHHHH
Q 007594           43 YGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRD  122 (597)
Q Consensus        43 ~G~NvygIlRAPRgdgtEAiVL~~p~~~~~~~~~~~~svalaLala~yl~r~~~wAKDIIfl~tD~~~g~~~G~~AWL~a  122 (597)
                      +|+|||||+|||||||||||||++||++.+++.| ..|+++++|++||+||++||||||||||+|+   +..|+||||||
T Consensus         2 ~G~nvy~i~rapR~d~tEaivl~~~~~~~~~~~n-~~~v~l~lal~~~~~~~~~wsKDii~l~~~~---~~~g~~awl~~   77 (504)
T PF04114_consen    2 SGTNVYGILRAPRGDGTEAIVLVVPWRDSDGEYN-AGGVALALALARYFRRQSYWSKDIIFLFTDD---ELAGMQAWLEA   77 (504)
T ss_pred             CceEEEEEEecCCCCCceeEEEEEecCCCCcccc-hhhHHHHHHHHHHhhhchhhhccEEEEecCC---cchHHHHHHHH
Confidence            6999999999999999999999999998877666 6799999999999999999999999999997   67999999999


Q ss_pred             hcCCCCCCCCccccccccCCCCCcccccccccccchheeeeeEEeecCCCCCcceEEEEeecCCCCCCchhHHHHHHHHH
Q 007594          123 YHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLA  202 (597)
Q Consensus       123 Yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~raG~IqaAl~le~~~~~~~~~~l~I~~eG~NGqLPNLDLiN~v~~ia  202 (597)
                      ||+.+.++...                 ...+.|+|+||||+++|++++  .+++++|++||+|||||||||+|++++++
T Consensus        78 Yh~~~~~~~~~-----------------~~l~~~~G~i~aAl~le~~~~--~~~~v~i~~eG~NGqLPNLDL~N~~~~i~  138 (504)
T PF04114_consen   78 YHDSNTKGLSS-----------------SPLPLRAGSIQAALVLEYPSD--SFSSVEIKYEGLNGQLPNLDLVNTVVRIA  138 (504)
T ss_pred             HhCCCCccccc-----------------cCCCCCCcceeEEEEEEecCC--CccEEEEEEecCCCCCCCchHHHHHHHHH
Confidence            99975332211                 123479999999999999987  46779999999999999999999999999


Q ss_pred             hhccCceeeEeeecccchhhhhhchhhhHhhhhhhhhccCCCcccCCChhhHHHHHHHHHHHHHHhhcCCCCCccccccc
Q 007594          203 VHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRD  282 (597)
Q Consensus       203 ~~~~G~~~~l~~~~~~~~~~w~~~~~~i~e~~g~~~~~~~p~~~~~~~~~~Y~~~l~tll~~m~~Qa~G~ptG~Hg~F~~  282 (597)
                      + ++|++++++....                        .++|+   +.++|.+++++|+++|.+||+|.|+|+||.|++
T Consensus       139 ~-~~gi~~~~~~~~~------------------------~~~~~---~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~  190 (504)
T PF04114_consen  139 E-KEGIPMGVSLHLQ------------------------PSDWH---SNSDYESRLKTLLRGMLNQALGGPTGPHGAFLR  190 (504)
T ss_pred             H-hcCCCcccccccc------------------------ccccc---cccchHHHHHHHHHHHHHhccCCCCCCchhhhh
Confidence            7 6888776643110                        11111   335899999999999999999999999999999


Q ss_pred             cccceEEEEEeccccccccccchhhHhhhHHHHHHHHHhhhhhhhhhhcceeeeeeCCCCceEeechhHHHHHHHHhchH
Q 007594          283 YQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLP  362 (597)
Q Consensus       283 y~IdAiTL~~~~~~~~~~~~~~~~~~~~lGr~iE~~~RSlNNLLErlHqSfFfYlL~s~~rFVSIG~Ympp~~Ll~a~l~  362 (597)
                      ||||||||++.+..++   +.++  +.++||++|+++||+||||||||||||||+|++++||||||+||||+++++++++
T Consensus       191 y~I~aiTl~~~~~~~~---~~~~--~~~~gr~~E~~~RslNNLlE~~HqSff~Yll~~~~~fvsig~Ylp~~~ll~~~~~  265 (504)
T PF04114_consen  191 YRIDAITLRGVKSTGP---GPHD--FTAFGRILEGIFRSLNNLLERFHQSFFFYLLLSPSRFVSIGTYLPAAVLLAASLL  265 (504)
T ss_pred             cCccEEEEecccCCCC---CCcC--HHHHHHHHHHHHHHHHHHHHhHhheeeEeEecCCceEeehHHHHHHHHHHHHHHH
Confidence            9999999987654321   2222  4689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCC--CccccccCc---cc-cccccccchhhhhHHHHHHHHHHHHHHHhHhHHhhhcCCCCC---ch
Q 007594          363 VVAASLYAKTLDLNPT--SEKDKSATS---NE-LGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDP---TT  433 (597)
Q Consensus       363 i~a~~l~~~~~~~~~~--~~~~~~~~~---~~-~~~~~~~~~~~~~~~~vl~~h~~G~~~~~lp~~~~~~~~~~~---~~  433 (597)
                      ++|+.+|.+.+..+..  +++++.+..   .+ .........+......+++.|+.|+.++++|....++.....   ..
T Consensus       266 i~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  345 (504)
T PF04114_consen  266 ISALSLWLKSGASDISLESEYGSSAPSFWFVSLLESFGFSLPFLSVLSPLLVSHLIGFLLFLLPYLGQYIASQHFPSFRL  345 (504)
T ss_pred             HHHHHHHHhCCccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhH
Confidence            9999999986532211  111100000   00 111111234677788888999999998888755444432111   11


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 007594          434 NFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKL  513 (597)
Q Consensus       434 ~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~lk~~~Ll~~~~~l~~la~lNFSLa~~~al~~vPl~l~~~p~~~  513 (597)
                      ...++..++++..++       |....  .|+++|.++|+++|++++++|++++++|||||+++|+++||+|++++|.++
T Consensus       346 ~~~~~~~lsl~~l~l-------~~~~~--~~~~~~~llk~~~Ll~~~~~L~~la~lNFSLa~l~all~vPl~~~~~~~~~  416 (504)
T PF04114_consen  346 ESVVLLYLSLISLLL-------PFRVV--LPPQQWALLKSFSLLLLGMFLSALATLNFSLAFLVALLLVPLCFIPRPSKQ  416 (504)
T ss_pred             HHHHHHHHHHHHHHh-------ccccc--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceecccCCcc
Confidence            122333333311111       32111  455799999999999999999999999999999999999999998887654


Q ss_pred             ccccchh-HHHHH-----HHHHHHHhhhcChhhHHHHhhhhhhccccccHHhHHHHHhhh-hhccchhhhhhhhhhHhHH
Q 007594          514 DVRGQSL-RSILR-----MICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESL-WAWNSATYLYIGMVHLPCW  586 (597)
Q Consensus       514 ~~~~~~~-~~~~~-----~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~v~~v~~P~W  586 (597)
                      +...++. +.++.     .++++++.++.+|+......+...+ .+... .+.++.+.++ |+||+|||++|||||||||
T Consensus       417 ~s~~r~~~~~a~L~l~~~~v~~l~ll~ls~~~~~~~~~~~~~~-~~~~~-~~~l~~~v~~~~v~G~Wt~~vv~lv~lP~W  494 (504)
T PF04114_consen  417 RSTLRSSLRSAVLLLNPPAVVLLVLLFLSFPFFPELLLKLFLD-GWQAV-MDALTFAVFDWWVYGNWTFFVVCLVWLPCW  494 (504)
T ss_pred             hhhhhHHHHHHHhcccchHHHHHHHHHhhcchHHHHHHHHHhh-hhhhH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3112221 22211     1233344445455555544442222 22222 3455555555 5999999999999999999


Q ss_pred             HHHHHHhcc
Q 007594          587 VLCVQILLH  595 (597)
Q Consensus       587 ~~~~~~~~~  595 (597)
                      ++||+++|.
T Consensus       495 ll~w~i~f~  503 (504)
T PF04114_consen  495 LLCWNILFW  503 (504)
T ss_pred             HHHHHHHcc
Confidence            999999984

Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex

>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional	Back alignment and domain information

>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		597
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 55/330 (16%), Positives = 105/330 (31%), Gaps = 85/330 (25%)

Query: 217 WLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGP 276
           W L SK  + + + F     + + L  ++K  +S     +   ++ + +Y +        
Sbjct: 69  WTLLSKQ-EEMVQKF-----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 277 HGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHG----GR--LIEGVIRSVNNLLEKFH 330
           +  F  Y V  +     LR +   L    + L+ G    G+  +   V  S      K  
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-----YKVQ 177

Query: 331 QSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVA--ASLYAKTLDLNPTSEKDKSAT-- 386
                             ++ +      +P  V+     L  + +D N TS  D S+   
Sbjct: 178 CKM------------DFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIK 224

Query: 387 ------SNELGSVLQSWKWLNSVKTVFVV--HFWGATVSLLPYFISQIPDSDPTTNFSVW 438
                   EL  +L+S  + N +    +V  +   A       F           N S  
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCL----LVLLNVQNAKA--WNAF-----------NLSCK 267

Query: 439 ILLSILSLEILRWILVSPSSHIY------GLPQGEWATLKSATISSFFIGLGLMSVINFA 492
           ILL+    ++  ++  + ++HI        L   E                 L+    + 
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--------------VKSLLL--KYL 311

Query: 493 TAEIGALLMVPM-ALMAHPLKLDVRGQSLR 521
                 L   P   L  +P +L +  +S+R
Sbjct: 312 DCRPQDL---PREVLTTNPRRLSIIAESIR 338

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		597
4f9u_A		312	CG32412; alpha/beta hydrolase, PGlu formation, PE,	98.03
3gux_A		314	Putative Zn-dependent exopeptidase; aminopeptidase	97.68
3tc8_A		309	Leucine aminopeptidase; phosphorylase/hydrolase-li	97.65
4fai_A		330	CG5976, isoform B; alpha/beta hydrolase, PGlu form	97.54
1tkj_A		284	Aminopeptidase, SGAP; double-zinc metalloproteinas	97.49
4fuu_A		309	Leucine aminopeptidase; phosphorylase/hydrolase li	97.25
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	97.06
1rtq_A		299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	97.03
3pb6_X		330	Glutaminyl-peptide cyclotransferase-like protein;	96.05
2afw_A		329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	95.69
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	93.6
3k9t_A		435	Putative peptidase; structural genomics, joint cen	93.31
3kas_A		640	Transferrin receptor protein 1; transferrin recept	91.41
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	91.07
4h2k_A		269	Succinyl-diaminopimelate desuccinylase; DAPE, MCSG	85.56

>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*	Back alignment and structure

Probab=98.03  E-value=7.4e-05  Score=76.76  Aligned_cols=104  Identities=15%  Similarity=0.172  Sum_probs=75.1

Q ss_pred             CCccCceeeeeecccCCCCccccccccCCCccccccccccceecceEEEEEcCCCCCCcceEEEEEEeccCC--------
Q 007594            1 MSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVK--------   72 (597)
Q Consensus         1 ~~~~g~e~~~~~f~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~G~NvygIlRAPRgdgtEAiVL~~p~~~~~--------   72 (597)
                      |+++|++|+.|+|...    ++       .        .....+.||+|.++.   ...|.+||.+-||+..        
T Consensus        42 l~~~g~~v~~~~f~~~----~~-------~--------~~~~~~~Nii~~~~~---~~~~~vvl~aHyDs~~~~~~~~~~   99 (312)
T 4f9u_A           42 LNGLGFQTEVDEFKQR----VP-------V--------FGELTFANVVGTINP---QAQNFLALACHYDSKYFPNDPGFV   99 (312)
T ss_dssp             HHHTTCEEEEEEEEEE----ET-------T--------TEEEEEEEEEEEEST---TSSEEEEEEEECCCCCCTTCTTCC
T ss_pred             HHHCCCeEEEEeEEEe----cC-------C--------CCceeEEEEEEEECC---CCCceEEEEEEEecCCCCCCCCCC
Confidence            3578999999999754    11       0        013568899999975   3568999999998742        


Q ss_pred             CCccchhhHHHHHHHHHHHhcC------cccccceEEEeeCCC-CC-------CchhHHHHHHHhcCC
Q 007594           73 GGVRETLSLGIAYSVFSLLTRV------TWLAKDIIWLVADSQ-YG-------EYAPVAAWLRDYHTP  126 (597)
Q Consensus        73 ~~~~~~~svalaLala~yl~r~------~~wAKDIIfl~tD~~-~g-------~~~G~~AWL~aYh~~  126 (597)
                      +..+++.|+|.+|-+||.|+..      .--.|+|+|++.|.. .|       ...|-++|.++|...
T Consensus       100 GA~DnaSGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~fdaEE~G~~~~~~~~L~GS~~~a~~~~~~  167 (312)
T 4f9u_A          100 GATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAFKEWTDADSVYGSKHLAAKLASK  167 (312)
T ss_dssp             CTTTTHHHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEEESCCSCSSSCSSSSSCHHHHHHHHHHHHC
T ss_pred             CccCCcccHHHHHHHHHHHHHHHHhhccCCCCceEEEEEecCccccccCCccccccChHHHHHHHHhh
Confidence            2234567999999999998631      224679999998864 22       167999999998653

PyMOL of 4f9u

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}	Back alignment and structure

>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*	Back alignment and structure

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A	Back alignment and structure

>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}	Back alignment and structure

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...	Back alignment and structure

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*	Back alignment and structure

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*	Back alignment and structure

>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}	Back alignment and structure

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A	Back alignment and structure

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...	Back alignment and structure

>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		597
d1tkja1		277	Aminopeptidase {Streptomyces griseus [TaxId: 1911]	98.13
d2afwa1		329	Glutaminyl-peptide cyclotransferase, QPCT {Human (	97.58
d1rtqa_		291	Aminopeptidase {Aeromonas proteolytica [TaxId: 671	96.72
d3bi1a3		304	Glutamate carboxypeptidase II FOLH1 {Human (Homo s	95.77
d1de4c3		294	Transferrin receptor ectodomain, protease-like dom	95.57
d1yloa2		264	Aminopeptidase YpdE {Shigella flexneri [TaxId: 623	95.5
d1vhoa2		248	Putative endoglucanase TM1048, catalytic domain {T	94.76
d1cg2a1		276	Carboxypeptidase G2, catalytic domain {Pseudomonas	91.8
d1vhea2		275	Hypothetical protein YsdC, catalytic domain {Bacil	89.44
d2fvga2		255	Endoglucanase TM1049 {Thermotoga maritima [TaxId:	88.61
d2grea2		233	Deblocking aminopeptidase YhfE {Bacillus cereus [T	86.92
d1y0ya2		255	Frv operon protein FrvX, catalytic domain {Pyrococ	81.22

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Streptomyces griseus [TaxId: 1911]

Probab=98.13  E-value=1.8e-05  Score=78.20  Aligned_cols=99  Identities=8%  Similarity=0.063  Sum_probs=73.9

Q ss_pred             CCccCceeeeeecccCCCCccccccccCCCccccccccccceecceEEEEEcCCCCCCcceEEEEEEeccCC---CCccc
Q 007594            1 MSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVK---GGVRE   77 (597)
Q Consensus         1 ~~~~g~e~~~~~f~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~G~NvygIlRAPRgdgtEAiVL~~p~~~~~---~~~~~   77 (597)
                      |+++|.||..|+|...                        ...+.||+|.++.++  ..|.+||.+-||+..   +..++
T Consensus        45 l~~~G~~~~~~~~~~~------------------------~~~~~Nvi~~~~g~~--~~~~i~~~aH~D~~~~~~Ga~D~   98 (277)
T d1tkja1          45 LDAAGYTTTLQQFTSG------------------------GATGYNLIANWPGGD--PNKVLMAGAHLDSVSSGAGINDN   98 (277)
T ss_dssp             HHHHTCEEEEEEEEET------------------------TEEEEEEEEECSCSE--EEEEEEEEEECCCCTTSCCTTTT
T ss_pred             HHHCCCeEEEEeeecc------------------------CccccCeEEEECCCC--CCCEEEEEccccccccccccCCC
Confidence            3578999999988643                        134789999997643  348899999998654   22344


Q ss_pred             hhhHHHHHHHHHHHhcCcc-cccceEEEeeCCCCCCchhHHHHHHHhcC
Q 007594           78 TLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGEYAPVAAWLRDYHT  125 (597)
Q Consensus        78 ~~svalaLala~yl~r~~~-wAKDIIfl~tD~~~g~~~G~~AWL~aYh~  125 (597)
                      +.|++.+|.++|.|++..+ ..|+|+|++.|+.-....|.++|++.+..
T Consensus        99 ~sgva~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g~~Gs~~~~~~~~~  147 (277)
T d1tkja1          99 GSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSKFYVNNLPS  147 (277)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHHHHHSCH
T ss_pred             ccchHHHHHHHHHHHhhcCCCCcceEEeecccccccccccHHHHHHhhc
Confidence            6789999999999987655 57899999987642236899999987643

PyMOL of d1tkja1

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]}	Back information, alignment and structure

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]}	Back information, alignment and structure

>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]}	Back information, alignment and structure

>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure