Citrus Sinensis ID: 007604

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590------
Protein Sequence
MSGEEGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKRLWLTDSVVDSHENQN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEcccccHHcHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHcccccccccccccEEHccEEEEcccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHcHcccHcccccccc
Coil and Loop (DISEMBL)
msgeegniddytqdgtvdlkgnpvrrskrggwracSFVVVYEVFERMAYHGISSNLVMYLTDklhhgtvksannvtnwggtiwvtpifgAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVslsglkpppcndinsqdcrkaSTLQLGTFFAALYTLAvgtggtkpniLTIAadqfdefepkekahkLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLagtpfyrhkkpagspfTRMAKVIVAAIRKrnvplpidpqelYELDLEYYAQRgkyrigstqnlRFFNKAAvktgatnpwilcSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGttldraigssfkippasltgfVTLSMLVCVVLYDRCFVRitrrwtknprgiTLLQRMGIGLVIHIIIMVIASFTERYRLSVakdhgivekgqqvpLTIFIMLPQFVLMGTADAFLEVAKieffydqapesmkslgtsysmTTLGVGNFLSSFLLSTVSDitkrhghkgwilnnlnvchLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKRLWLTDSVVDSHENQN
Flexible Loop (DISEMBL)
msgeegniddytqdgtvdlkgnpvrrskrggwraCSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKrnvplpidpqelYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVritrrwtknprgitllqrMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKrlwltdsvvdshenqn
Low Complexity Region (SEG)
MSGEEGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVgwalgyglpalglaiaiaiflagTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRmgiglvihiiimviASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAIlnvlnfvfflvvAKFYVYKAEVSDSMEVLTEELKRLWLTDSVVDSHENQN
Disordered region (IsUnstruct)
****************************RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKRLWLTDSV********
Disordered Region (DISOPRED)
***************TVDLKGNPV*****GGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPC***********STLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPI***************************RFFNKAAVK*GATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYV*********************************
Disordered Region (DISEMBL)
********DDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKRLWLTDSV********
Disordered Region (DISPRO)
*************DGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAE*****************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGEEGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKRLWLTDSVVDSHENQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	596	2.2.26 [Sep-21-2011]
Q9FNL7	582	Peptide transporter PTR3-	yes	no	0.959	0.982	0.695	0.0
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.954	0.970	0.654	0.0
Q8VZR7	583	Probable peptide/nitrate	no	no	0.931	0.951	0.505	1e-164
Q9M390	570	Peptide transporter PTR1	no	no	0.931	0.973	0.460	1e-149
P46032	585	Peptide transporter PTR2	no	no	0.937	0.955	0.429	1e-138
Q9LFB8	570	Peptide transporter PTR5	no	no	0.942	0.985	0.429	1e-137
Q93Z20	590	Probable peptide/nitrate	no	no	0.914	0.923	0.419	1e-130
Q84WG0	545	Probable peptide/nitrate	no	no	0.855	0.935	0.421	1e-123
Q9M1I2	555	Probable peptide/nitrate	no	no	0.901	0.967	0.395	1e-120
Q9M331	602	Probable peptide/nitrate	no	no	0.927	0.918	0.396	1e-118

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  817 bits (2111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/574 (69%), Positives = 473/574 (82%), Gaps = 2/574 (0%)

Query: 9   DDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGT 68
           DDYT+DGTVDL+GNPVRRS RG W+ACSFVVVYEVFERMAY+GISSNL +Y+T KLH GT
Sbjct: 8   DDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGT 67

Query: 69  VKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKP 128
           VKS+NNVTNW GT W+TPI GA V +A LGRY TFVI+   Y  GM+VL LSV++ G+KP
Sbjct: 68  VKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKP 127

Query: 129 PPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL 188
           P C+  N ++C KAS LQL  FF ALYTLA+GTGGTKPNI TI ADQFD F+PKEK  KL
Sbjct: 128 PECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKL 187

Query: 189 SFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKP 248
           SFFNWWMFSIFFGTL  NTVLVY+QD+VGW LGYGLP LGLAI+I IFL GTPFYRHK P
Sbjct: 188 SFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLP 247

Query: 249 AGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAV 308
            GSPFT+MA+VIVA+ RK N P+  D    +EL    Y ++G + I  T +LRF ++A++
Sbjct: 248 TGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDRASL 307

Query: 309 KTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSS 368
           KTG  + W LC+ ++VEET QML M+P+L  TFVPS MLAQINTLFVKQGTTLDR +  S
Sbjct: 308 KTGTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGS 367

Query: 369 FKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVI 428
           F IPPASL+GFVTLSML+ +VLYDR FV+ITR++T NPRGITLLQRMGIGL+ HI+IM++
Sbjct: 368 FSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIV 427

Query: 429 ASFTERYRLSVAKDHGIVEK-GQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPE 487
           AS TERYRL VA DHG++ + G ++PLTIF +LPQFVLMG AD+FLEVAK+EFFYDQAPE
Sbjct: 428 ASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFFYDQAPE 487

Query: 488 SMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAIL 547
           SMKSLGTSYS T+L +GNF+SSFLLSTVS+ITK+ G +GWILNNLN   LDYYY FFA+L
Sbjct: 488 SMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRG-RGWILNNLNESRLDYYYLFFAVL 546

Query: 548 NVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKR 581
           N++NFV FLVV KFYVY+AEV+DS++V   E+K 
Sbjct: 547 NLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMKE 580

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/571 (65%), Positives = 456/571 (79%), Gaps = 2/571 (0%)

Query: 9   DDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGT 68
           DDYT+DGTVDL+GN VRRS+ G W+ACSFVVVYEVFERMAY+GISSNLV+Y+T KLH GT
Sbjct: 8   DDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGT 67

Query: 69  VKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKP 128
           VKS+NNVTNW GT W+TPI GA VA+A+ GRY TFVI+   YL+GM +L LSVSL GLKP
Sbjct: 68  VKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKP 127

Query: 129 PPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL 188
           P C+  N ++C KAS +QL  FF ALYTLA+GTGGTKPNI TI ADQFDEF+PK+K HK 
Sbjct: 128 PKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKH 187

Query: 189 SFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKP 248
           SFFNWWMFSIFFGT    TVLVY+QD+VGWA+GYGL  LGLA +I IFL GT  YRHK P
Sbjct: 188 SFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLP 247

Query: 249 AGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAV 308
            GSPFT+MA+VIVA++RK   P+  D    YEL    YA +  + I ST +LRF N+A++
Sbjct: 248 MGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNRASL 307

Query: 309 KTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSS 368
           KTG+T+ W LC++++VEET QML M+P+L  TFVPS MLAQI TLF+KQGTTLDR + ++
Sbjct: 308 KTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNN 367

Query: 369 FKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVI 428
           F IPPASL GF T SMLV +V+YDR FV+  R+ T NPRGITLLQRMGIG+++HI+IM+I
Sbjct: 368 FSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIMII 427

Query: 429 ASFTERYRLSVAKDHGIVEK-GQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPE 487
           AS TERYRL VA +HG+  +    +PL+IF +LPQ+VLMG ADAF+E+AK+EFFYDQAPE
Sbjct: 428 ASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPE 487

Query: 488 SMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAIL 547
           SMKSLGTSY+ T++ VG F+SS LLS+VS ITK+ G +GWI NNLN   LD YY FFA+L
Sbjct: 488 SMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQG-RGWIQNNLNESRLDNYYMFFAVL 546

Query: 548 NVLNFVFFLVVAKFYVYKAEVSDSMEVLTEE 578
           N+LNF+ FLVV +FY Y+A+V+ S  V  +E
Sbjct: 547 NLLNFILFLVVIRFYEYRADVTQSANVEQKE 577

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2

 Score =  580 bits (1494), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 285/564 (50%), Positives = 390/564 (69%), Gaps = 9/564 (1%)

Query: 11  YTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVK 70
           YTQDGTVDL+G PV  SK G WRACSF++ YE FERMA++GI+SNLV YLT +LH  T+ 
Sbjct: 7   YTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRLHEDTIS 66

Query: 71  SANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPP 130
           S  NV NW G +W+TPI GA +A++Y+GR+WTF  +   Y++GMI+L ++V++  L+P  
Sbjct: 67  SVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVKSLRPTC 126

Query: 131 CNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF 190
            N +    C KAS+LQ+  F+ +LYT+A+G GGTKPNI T  ADQFD +  +EK  K+SF
Sbjct: 127 ENGV----CNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKVSF 182

Query: 191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAG 250
           FNWWMFS F G L     LVYIQ+++GW LGYG+P +GL +++ +F  GTPFYRHK    
Sbjct: 183 FNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKVIKT 242

Query: 251 SPFTR-MAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVK 309
               + + +V +AA + R +  P D  ELYELD  YY   GK+++  T   RF +KAA+K
Sbjct: 243 DNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAAIK 302

Query: 310 TGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSF 369
           T +  P   C+V++VE   ++L +I I + T +PST+ AQ+NTLFVKQGTTLDR IGS+F
Sbjct: 303 TSSRVP---CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNF 359

Query: 370 KIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIA 429
           +IP ASL  FVTLSML+ V +YD+ FV   R+ T NPRGITLLQR+G+G  I I+ + IA
Sbjct: 360 QIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAIAIA 419

Query: 430 SFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESM 489
           S  E  R+ V K+  I    Q VP++IF +LPQ+ L+G  D F  +  +EFFYDQ+PE M
Sbjct: 420 SAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEM 479

Query: 490 KSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNV 549
           +SLGT++  + +G+GNFL+SFL++ +  IT + G K WI NNLN   LDYYY F  ++++
Sbjct: 480 QSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYYGFLVVISI 539

Query: 550 LNFVFFLVVAKFYVYKAEVSDSME 573
           +N   F+  A  YVYK++  D+ E
Sbjct: 540 VNMGLFVWAASKYVYKSD-DDTKE 562

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  530 bits (1364), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/567 (46%), Positives = 376/567 (66%), Gaps = 12/567 (2%)

Query: 9   DDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGT 68
           D YTQDGTVD+  NP  + K G W+AC F++  E  ER+AY+G+ +NLV YL  +L+ G 
Sbjct: 5   DVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64

Query: 69  VKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKP 128
             +ANNVTNW GT ++TP+ GA +A+AYLGRYWT     F Y+ GM +L LS S+ GLKP
Sbjct: 65  ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124

Query: 129 PPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL 188
             CN   +  C   S+ Q   FF ALY +A+GTGG KP + +  ADQFDE +  EK  K 
Sbjct: 125 GNCN---ADTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKS 180

Query: 189 SFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKP 248
           SFFNW+ FSI  G L+  TVLV+IQ +VGW  G+G+P + + IA+  F  G+ FYR ++P
Sbjct: 181 SFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRP 240

Query: 249 AGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAV 308
            GSP TR+ +VIVAA RK +V +P D   L+E   +    +G  ++  T NL+FF+KAAV
Sbjct: 241 GGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAV 300

Query: 309 -------KTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTL 361
                  K G  NPW LCSV+QVEE   ++ ++P+     V +T+ +Q++T+FV QG T+
Sbjct: 301 ESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTM 360

Query: 362 DRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVI 421
           D+ +G +F+IP ASL+ F T+S+L    +YD+  + + R++T+N RG T LQRMGIGLV+
Sbjct: 361 DQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVV 420

Query: 422 HIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFF 481
            I  M+ A   E  RL   K H   ++ +Q+ ++IF  +PQ++L+G A+ F  + ++EFF
Sbjct: 421 SIFAMITAGVLEVVRLDYVKTHNAYDQ-KQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFF 479

Query: 482 YDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYY 541
           YDQAP++M+SL ++ S+TT+ +GN+LS+ L++ V  ITK++G  GWI +NLN  HLDY++
Sbjct: 480 YDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFF 539

Query: 542 AFFAILNVLNFVFFLVVAKFYVYKAEV 568
              A L+ LNF+ +L ++K Y YK  V
Sbjct: 540 YLLATLSFLNFLVYLWISKRYKYKKAV 566

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  493 bits (1270), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/577 (42%), Positives = 370/577 (64%), Gaps = 18/577 (3%)

Query: 4   EEG----NIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMY 59
           EEG     +  Y +DG+VD  GNP  + K G W+AC F++  E  ER+AY+GI+ NL+ Y
Sbjct: 13  EEGLILQEVKLYAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITY 72

Query: 60  LTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLAL 119
           LT KLH G V +A NVT W GT ++TP+ GA +A+AY GRYWT       Y +GM  L L
Sbjct: 73  LTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTL 132

Query: 120 SVSLSGLKPPPC-NDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDE 178
           S S+  LKP  C  D     C  A+  Q   FF  LY +A+GTGG KP + +  ADQFD+
Sbjct: 133 SASVPALKPAECIGDF----CPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDD 188

Query: 179 FEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA 238
            + +E+  K SFFNW+ FSI  G L+ +++LV+IQ++ GW LG+G+P + + +AIA F  
Sbjct: 189 TDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFF 248

Query: 239 GTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQ 298
           GTP YR +KP GSP TR+++V+VA+ RK +V +P D   LYE   +  A  G  +I  T 
Sbjct: 249 GTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTD 308

Query: 299 NLRFFNKAAV------KTGA-TNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQIN 351
           + ++ +KAAV      K+G  +N W LC+V+QVEE   ++ M PI  +  + S + AQ++
Sbjct: 309 DCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMS 368

Query: 352 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITL 411
           T+FV+QG  ++  IGS F++PPA+L  F T S+++ V LYDR  V + R++T   +G T 
Sbjct: 369 TMFVQQGRAMNCKIGS-FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTE 427

Query: 412 LQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADA 471
           +QRMGIGL + ++ M  A+  E  RL +A D G+VE G  VP+++   +PQ+ ++G A+ 
Sbjct: 428 IQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEV 487

Query: 472 FLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNN 531
           F  + ++EFFYDQ+P++M+SL ++ ++ T  +GN+LSS +L+ V+  T R+G +GWI +N
Sbjct: 488 FYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDN 547

Query: 532 LNVCHLDYYYAFFAILNVLNF-VFFLVVAKFYVYKAE 567
           LN  HLDY++   A L+++N  V+F   A++   KA 
Sbjct: 548 LNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQKKAS 584

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  490 bits (1261), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/575 (42%), Positives = 368/575 (64%), Gaps = 13/575 (2%)

Query: 5   EGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKL 64
           E + D YT+DGT+D+   P  ++K G W+AC F++  E  ER+AY+G+S+NL+ YL  ++
Sbjct: 2   EDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQM 61

Query: 65  HHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLS 124
           +   V ++ +V+NW GT + TP+ GA +A+AYLGRYWT       Y+ GM +L +S S+ 
Sbjct: 62  NMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVP 121

Query: 125 GLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEK 184
           GL P      + + C  A+  Q    F ALY +A+GTGG KP + +  ADQFD+ + KEK
Sbjct: 122 GLTP----TCSGETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176

Query: 185 AHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYR 244
             K SFFNW+ F I  G ++ ++VLV+IQ +VGW  G G+P + +AIA+  F AG+ FYR
Sbjct: 177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236

Query: 245 HKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFN 304
            +KP GSP TRM +VIVA+ RK  V +P D   LYE      +  G  ++  T+ L FF+
Sbjct: 237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFD 296

Query: 305 KAAVKTGATN-------PWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQ 357
           KAAV+T + N        W LC+V+QVEE   ++ ++PI     V +++ +Q+ T+FV Q
Sbjct: 297 KAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQ 356

Query: 358 GTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGI 417
           G TLD+ +G +FKIP ASL+ F TLS+L    +YD+  V   R++T + RG T LQR+GI
Sbjct: 357 GNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGI 416

Query: 418 GLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAK 477
           GLVI I  MV A   E  RL+  + H +  + + +P+TIF  +PQ+ L+G A+ F  + +
Sbjct: 417 GLVISIFSMVSAGILEVARLNYVQTHNLYNE-ETIPMTIFWQVPQYFLVGCAEVFTFIGQ 475

Query: 478 IEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHL 537
           +EFFYDQAP++M+SL ++ S+T +  GN+LS+FL++ V+ +T+  G  GWI  NLN  HL
Sbjct: 476 LEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHL 535

Query: 538 DYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSM 572
           DY++   A L+ LNF+ +L +AK+Y YK     ++
Sbjct: 536 DYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTGHAL 570

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  467 bits (1201), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/562 (41%), Positives = 358/562 (63%), Gaps = 17/562 (3%)

Query: 13  QDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSA 72
           +DG++D+ GNP  + K G W+AC F++  E  ER+AY+GI+ NL+ Y T +LH   V +A
Sbjct: 37  EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96

Query: 73  NNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCN 132
           ++V  W GT ++TP+ GA +A++Y GRYWT       Y +GM +L LS SL  LKP  C 
Sbjct: 97  SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156

Query: 133 DINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN 192
            + +  C  A+T+Q   FF  LY +A+GTGG KP + +  ADQFD+ +P+E+  K SFFN
Sbjct: 157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216

Query: 193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSP 252
           W+ FSI  G+ + +T+LV++Q++VGW LG+ +P + + ++IA F  GTP YR +KP GSP
Sbjct: 217 WFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSP 276

Query: 253 FTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAV---- 308
            TR+ +V+VAA RK  + LP D   LYE   +     G  +I  T   +F +KAAV    
Sbjct: 277 ITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEY 336

Query: 309 --KTGA-TNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAI 365
             K+GA +NPW LC+V+QVEE   ++ M PI  +  V S + +QI+TLFV+QG +++R I
Sbjct: 337 ESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRII 396

Query: 366 GSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIII 425
             SF+IPPAS   F TL +L+ + +YDR  V   RR+T  P+G+T LQRMGIGL + ++ 
Sbjct: 397 -RSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLS 455

Query: 426 MVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQA 485
           +  A+  E  RL +A+D         V ++IF  +PQ++LMG A+ F  + ++EFFYD++
Sbjct: 456 IAAAAIVETVRLQLAQDF--------VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDES 507

Query: 486 PESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFA 545
           P++M+S+ ++ ++    VG++LSS +L+ V+  T   G  GW+ ++LN  HLDY++    
Sbjct: 508 PDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLV 567

Query: 546 ILNVLNF-VFFLVVAKFYVYKA 566
            L ++N  V+ L+  K    KA
Sbjct: 568 SLGLVNIPVYALICVKHTKKKA 589

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  441 bits (1134), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/551 (42%), Positives = 335/551 (60%), Gaps = 41/551 (7%)

Query: 11  YTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVK 70
           Y +DG++D+ GNP  +   G W+AC F+   E  ER+AY+GI+ NL+ Y T++LH   V 
Sbjct: 25  YAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVS 84

Query: 71  SANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPP 130
           +A +V  W GT ++TP+ GA +A+AY GRYWT       Y  GM+ L LS S+ GLKP  
Sbjct: 85  AARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAE 144

Query: 131 CNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF 190
           C  I S  C  A+ +Q    F+ LY +A+GTGG KP + +  ADQFD+ +P E+  K SF
Sbjct: 145 C--IGSL-CPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201

Query: 191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAG 250
           FNW+ F+I  G  + +TVLV+IQ++ GW LG+ +P + + +A   F  GTP YR +KP G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261

Query: 251 SPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKT 310
           SP T + +V+VAA RK N+ +P D  +  E D                            
Sbjct: 262 SPITSVCQVLVAAYRKSNLKVPEDSTD--EGD---------------------------- 291

Query: 311 GATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFK 370
             TNPW LC+V+QVEE   +L ++PI  +  + S + +QI TLFV+QG  + R IG  F+
Sbjct: 292 ANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIG-LFE 350

Query: 371 IPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIAS 430
           IPPA+L  F T S+L+ V +YDR  V + RR+T   +G T LQRMGIGL + ++ +  A+
Sbjct: 351 IPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAA 410

Query: 431 FTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMK 490
             E  RL +A+D  +VE G  VPL IF  +PQ+ LMGTA  F  V +IEFFY+Q+P+SM+
Sbjct: 411 IVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMR 470

Query: 491 SLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWI-LNNLNVCHLDYYYAFFAILNV 549
           SL +++++ T  +GN+LSS +++ V+ ++   G   WI  +N+N  HLDY++     L  
Sbjct: 471 SLCSAWALLTTTLGNYLSSLIITLVAYLS---GKDCWIPSDNINNGHLDYFFWLLVSLGS 527

Query: 550 LN---FVFFLV 557
           +N   FVFF V
Sbjct: 528 VNIPVFVFFSV 538

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  433 bits (1114), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/566 (39%), Positives = 342/566 (60%), Gaps = 29/566 (5%)

Query: 24  VRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIW 83
           + +  +GGW A  F++V E+ ER A++G++SNL+ +LT++L   T  +A N+  W G   
Sbjct: 8   INKRTKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSC 67

Query: 84  VTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKAS 143
           + PI GA +A++ LGR+ T ++  F YL+G+++L LSV++                  A 
Sbjct: 68  MFPILGAFLADSILGRFKTVLLTSFIYLLGIVMLPLSVTVV-----------------AR 110

Query: 144 TLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTL 203
            ++   FF ALY +AVG GG KP ++T AADQF E   +EKA K SFFN+W  +I   + 
Sbjct: 111 RMREKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASS 170

Query: 204 LGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAA 263
           +    L++IQ+ V W+LG+ + A  + IAI IFL G P YR + P GSPFTR+A+V+VAA
Sbjct: 171 IAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAA 230

Query: 264 IRKRNVP-----LPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAV-----KTGAT 313
           ++K  +        +  +E  E  LE       Y +  T   RF +KA +          
Sbjct: 231 LKKWRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNKNR 290

Query: 314 NPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPP 373
           NPW LC+V+QVEE   +L +IPI ++  +    L Q+NT F+KQG+ +DR IG+ F IPP
Sbjct: 291 NPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPP 350

Query: 374 ASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTE 433
           A+    V +++L+ + LYDR FV + R+ T +  GIT LQR+G+GL +    MVI    E
Sbjct: 351 AAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVE 410

Query: 434 RYRLSVAKDHGIVEKGQQ-VPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSL 492
             RL VA+DHG+++  ++ VP++   +LPQ++L+G  D F  V   E FYDQ PE+M+S+
Sbjct: 411 AKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSI 470

Query: 493 GTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNF 552
           G +  ++ +GVG+F+S+ ++STV  I+K HG + W++NNLN  HLDYYY   A LN ++ 
Sbjct: 471 GAAIFISVVGVGSFVSTGIISTVQTISKSHGEE-WLVNNLNRAHLDYYYWIIASLNAVSL 529

Query: 553 VFFLVVAKFYVYKAEVSDSMEVLTEE 578
            F+L +A  ++YK       +V +E 
Sbjct: 530 CFYLFIANHFLYKKLQDKDDDVESER 555

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/573 (39%), Positives = 344/573 (60%), Gaps = 20/573 (3%)

Query: 14  DGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSAN 73
           D + D +G    R++ G WRA  F++  E  ER++Y GIS+NLV+YLT  LH     +  
Sbjct: 23  DSSTDSRGEIPLRAQTGAWRAALFIIGIEFSERLSYFGISTNLVVYLTTILHQDLKMAVK 82

Query: 74  NVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCND 133
           N   W G   + P+ G  VA+AYLGRY T ++A   YLMG+I+L LS  + GLK   C++
Sbjct: 83  NTNYWSGVTTLMPLLGGFVADAYLGRYGTVLLATTIYLMGLILLTLSWFIPGLKA--CHE 140

Query: 134 INSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW 193
               + RKA  +    FF A+Y +++GTGG KP++ +  ADQF++  P+E+  K+S+FNW
Sbjct: 141 DMCVEPRKAHEI---AFFIAIYLISIGTGGHKPSLESFGADQFEDGHPEERKMKMSYFNW 197

Query: 194 WMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPF 253
           W   +  G L   TV+VYI+D +GW +   +  + +A +  IF  G PFYR++ P+GSP 
Sbjct: 198 WNAGLCAGILTAVTVIVYIEDRIGWGVASIILTIVMATSFFIFRIGKPFYRYRAPSGSPL 257

Query: 254 TRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAV----- 308
           T M +V VAAI KRN+P P D   L+EL  E Y  +G+  + S++NL+F +KAAV     
Sbjct: 258 TPMLQVFVAAIAKRNLPCPSDSSLLHELTNEEYT-KGRL-LSSSKNLKFLDKAAVIEDRN 315

Query: 309 ---KTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAI 365
              K    +PW L +V++VEE   ++ MIPI   T        Q +TLF+KQ   +DR I
Sbjct: 316 ENTKAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHI 375

Query: 366 -GSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHII 424
            G+SF +PPASL   + LS+++ V +Y++  V + RR T N RGI++LQR+G+G+V  + 
Sbjct: 376 TGTSFIVPPASLFSLIALSIIITVTIYEKLLVPLLRRATGNERGISILQRIGVGMVFSLF 435

Query: 425 IMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQ 484
            M+IA+  E+ RL  AK+H +    + + L+   + PQF+++G ADAF  V   E+FYDQ
Sbjct: 436 AMIIAALIEKKRLDYAKEHHM---NKTMTLSAIWLAPQFLVLGVADAFTLVGLQEYFYDQ 492

Query: 485 APESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFF 544
            P+SM+SLG ++ ++ LG  +F+++ L++    + +    KGW   +LN   LD +Y   
Sbjct: 493 VPDSMRSLGIAFYLSVLGAASFVNNLLITVSDHLAEEISGKGWFGKDLNSSRLDRFYWML 552

Query: 545 AILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTE 577
           A L   N   F++VA  Y YK  V  S+ V+ +
Sbjct: 553 AALTAANICCFVIVAMRYTYKT-VQPSLAVVAD 584

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	596
224107477	589	predicted protein [Populus trichocarpa]	0.974	0.986	0.788	0.0
225433219	592	PREDICTED: peptide transporter PTR3-A [V	0.991	0.998	0.769	0.0
147806162	586	hypothetical protein VITISV_015576 [Viti	0.959	0.976	0.783	0.0
224099963	547	predicted protein [Populus trichocarpa]	0.909	0.990	0.806	0.0
357441053	593	Peptide transporter PTR3-A [Medicago tru	0.968	0.973	0.745	0.0
449458852	592	PREDICTED: peptide transporter PTR3-A-li	0.973	0.979	0.719	0.0
356576503	594	PREDICTED: peptide transporter PTR3-A-li	0.984	0.988	0.725	0.0
356501795	635	PREDICTED: peptide transporter PTR3-A-li	0.968	0.908	0.732	0.0
356533306	590	PREDICTED: peptide transporter PTR3-A-li	0.968	0.977	0.731	0.0
255575829	564	oligopeptide transporter, putative [Rici	0.912	0.964	0.787	0.0

>gi|224107477|ref|XP_002314492.1| predicted protein [Populus trichocarpa] gi|222863532|gb|EEF00663.1| predicted protein [Populus trichocarpa]

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/582 (78%), Positives = 514/582 (88%), Gaps = 1/582 (0%)

Query: 5   EGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKL 64
           E  +DDYTQDGTVDLKG PV RSKRGG +ACSFVVVYEVFERMAY+GISSNLV+YLT KL
Sbjct: 2   EHGLDDYTQDGTVDLKGKPVLRSKRGGLKACSFVVVYEVFERMAYYGISSNLVVYLTKKL 61

Query: 65  HHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLS 124
           H GTVKS+NNVTNW GTIW+TPI GA VA+A+LGRYWTFV+A   YL GM +L LSVSL 
Sbjct: 62  HQGTVKSSNNVTNWVGTIWLTPILGAYVADAHLGRYWTFVVASVIYLSGMSLLTLSVSLP 121

Query: 125 GLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEK 184
            L+PP C + N ++C++ASTLQL  FF ALYTLA+GTGGTKPNI TI ADQFD+F PKEK
Sbjct: 122 ALRPPICKNANVENCKEASTLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDDFHPKEK 181

Query: 185 AHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYR 244
           A+KLSFFNWWMFSIFFGTL  NT+LVYIQD+VGWALGYGLP LGL I++AIFLAGTPFYR
Sbjct: 182 AYKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWALGYGLPTLGLVISVAIFLAGTPFYR 241

Query: 245 HKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFN 304
           H++P GSPFTRMAKVIVAA+RK  V +P DP+EL+ELDLE YA+ GK+RI ST  LRF N
Sbjct: 242 HRQPTGSPFTRMAKVIVAALRKWKVSVPNDPKELHELDLEEYAKAGKFRIDSTPTLRFLN 301

Query: 305 KAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRA 364
           KAAVKTG+T+PW+LCSV+QVEET QML MIPIL++TFVPSTM+AQINTLFVKQGTTLDR 
Sbjct: 302 KAAVKTGSTDPWMLCSVTQVEETKQMLRMIPILISTFVPSTMIAQINTLFVKQGTTLDRQ 361

Query: 365 IGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHII 424
           IG +F++PPASL GFVTLSMLVCVVLYDR FVRI RRWTKNPRGITLLQRMGIGLV HII
Sbjct: 362 IG-NFEVPPASLAGFVTLSMLVCVVLYDRFFVRIVRRWTKNPRGITLLQRMGIGLVFHII 420

Query: 425 IMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQ 484
           IM+ AS  ER+RLSVA+ HG+VEKG QVPLTIFI+LPQFVLMG ADAFLEVAK+EFFYDQ
Sbjct: 421 IMITASLIERHRLSVARQHGLVEKGGQVPLTIFILLPQFVLMGAADAFLEVAKLEFFYDQ 480

Query: 485 APESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFF 544
           APESMKSLGTSYS T+LGVGNF+SSFLLSTVS ITK+HGH+GWILNNLN  HLDYYYAFF
Sbjct: 481 APESMKSLGTSYSTTSLGVGNFISSFLLSTVSHITKKHGHRGWILNNLNASHLDYYYAFF 540

Query: 545 AILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKRLWLTD 586
           AILN LNF+FFL V +FYVYKAEVSDSMEVL EELK + L +
Sbjct: 541 AILNFLNFIFFLGVIRFYVYKAEVSDSMEVLAEELKAMRLRE 582

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433219|ref|XP_002285402.1| PREDICTED: peptide transporter PTR3-A [Vitis vinifera] gi|296083701|emb|CBI23690.3| unnamed protein product [Vitis vinifera]

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/594 (76%), Positives = 513/594 (86%), Gaps = 3/594 (0%)

Query: 3   GEEGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTD 62
           G E  +DDYTQDGTVDLKGNPVRRSKRGGW ACSFVVVYEVFERMAY+GIS+NLV+YLT 
Sbjct: 2   GVENGVDDYTQDGTVDLKGNPVRRSKRGGWTACSFVVVYEVFERMAYYGISTNLVIYLTK 61

Query: 63  KLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVS 122
           KLH GTV S+NNVTNW GT+W+TP+ GA +A+AYLGRY TFVIA   YL GM +L ++VS
Sbjct: 62  KLHQGTVTSSNNVTNWVGTVWMTPVLGAYIADAYLGRYLTFVIASAIYLAGMSLLTVAVS 121

Query: 123 LSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPK 182
           + GLKPP C   +  DC+KASTLQL  FF ALYTLAVGTGGTKPNI TI ADQFD+F+PK
Sbjct: 122 VPGLKPPRCVATDMADCKKASTLQLAVFFGALYTLAVGTGGTKPNISTIGADQFDDFDPK 181

Query: 183 EKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPF 242
           EK HKLSFFNWWMFSIFFGTL  NT+LVYIQD+VGW LGYGLP  GLAI+I IFLAGTPF
Sbjct: 182 EKGHKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWTLGYGLPTAGLAISIVIFLAGTPF 241

Query: 243 YRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRF 302
           YRH+ P+GSPFTRMAKVI+AA+RK   P+P DP+ELYELDLE YA++GK+RI ST  LRF
Sbjct: 242 YRHRVPSGSPFTRMAKVIIAALRKWKTPVPTDPKELYELDLEEYAKKGKFRIDSTPTLRF 301

Query: 303 FNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLD 362
            NKA VKTG+ +PW+LCSV+QVEET QML MIPIL+ATFVPSTM+AQINTLFVKQGTTLD
Sbjct: 302 LNKACVKTGSKDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINTLFVKQGTTLD 361

Query: 363 RAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIH 422
           R IG SF IPPASLTGFVTLSMLV VVLYDR FV ITRR TKNPRGITLLQRMGIGLV H
Sbjct: 362 RGIG-SFNIPPASLTGFVTLSMLVSVVLYDRFFVTITRRLTKNPRGITLLQRMGIGLVFH 420

Query: 423 IIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFY 482
           I IM++AS  ER RLSVAKDHG+VE G QVPL+I I+LPQF+LMGTADAFLEVAKIEFFY
Sbjct: 421 IFIMMVASLVERRRLSVAKDHGVVESGGQVPLSILILLPQFILMGTADAFLEVAKIEFFY 480

Query: 483 DQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYA 542
           DQAPESMKSLGTSYSMT+LG+GNFLSSFLL+TVS ITK+HGH GWILNNLN  HLDYYYA
Sbjct: 481 DQAPESMKSLGTSYSMTSLGIGNFLSSFLLTTVSHITKKHGHHGWILNNLNASHLDYYYA 540

Query: 543 FFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKRLWLTDSVVDSHENQN 596
           FFAILN LNF+FF+VV K+YVYKAEV+DSMEVL  +L+   LT +V +  E++ 
Sbjct: 541 FFAILNFLNFIFFIVVTKYYVYKAEVTDSMEVLEGQLRG--LTPAVTNQEESRT 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806162|emb|CAN63331.1| hypothetical protein VITISV_015576 [Vitis vinifera]

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/573 (78%), Positives = 501/573 (87%), Gaps = 1/573 (0%)

Query: 3   GEEGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTD 62
           G E  +DDYTQDGTVDLKGNPVRRSKRGGW ACSFVVVYEVFERMAY+GIS+NLV+YLT 
Sbjct: 2   GVENGVDDYTQDGTVDLKGNPVRRSKRGGWTACSFVVVYEVFERMAYYGISTNLVIYLTK 61

Query: 63  KLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVS 122
           KLH GTV S+NNVTNW GT+W+TP+ GA +A+AYLGRY TFVIA   YL GM +L ++VS
Sbjct: 62  KLHQGTVTSSNNVTNWVGTVWMTPVLGAYIADAYLGRYLTFVIASAIYLAGMSLLTVAVS 121

Query: 123 LSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPK 182
           + GLKPP C   +  DC+KASTLQL  FF ALYTLAVGTGGTKPNI TI ADQFD+F+PK
Sbjct: 122 VPGLKPPRCVATDMADCKKASTLQLAVFFGALYTLAVGTGGTKPNISTIGADQFDDFDPK 181

Query: 183 EKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPF 242
           EK HKLSFFNWWMFSIFFGTL  NT+LVYIQD+VGW LGYGLP  GLAI+I IFLAGTPF
Sbjct: 182 EKGHKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWTLGYGLPTAGLAISIMIFLAGTPF 241

Query: 243 YRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRF 302
           YRH+ P+GSPFTRMAKVI+AA+RK   P+P DP+ELYELDLE Y ++GK+RI ST  LRF
Sbjct: 242 YRHRVPSGSPFTRMAKVIIAALRKWKTPVPTDPKELYELDLEEYGKKGKFRIDSTPTLRF 301

Query: 303 FNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLD 362
            NKA VKTG+ +PW+LCSV+QVEET QML MIPIL+ATFVPSTM+AQINTLFVKQGTTLD
Sbjct: 302 LNKACVKTGSKDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINTLFVKQGTTLD 361

Query: 363 RAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIH 422
           R IG SF IPPASLTGFVT+SMLV VVLYDR FV I RR TKNPRGITLLQRMGIGLV H
Sbjct: 362 RGIG-SFNIPPASLTGFVTISMLVSVVLYDRFFVTIMRRLTKNPRGITLLQRMGIGLVFH 420

Query: 423 IIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFY 482
           I+IM++AS  ER RLSVAKDHG+VE G QVPL+I I+LPQF+LMGTADAFLEVAKIEFFY
Sbjct: 421 IVIMMVASLVERRRLSVAKDHGVVESGGQVPLSILILLPQFILMGTADAFLEVAKIEFFY 480

Query: 483 DQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYA 542
           DQAPESMKSLGTSYSMT+LG+GNFLSSFLL+TVS ITK+HGH GWILNNLN  HLDYYYA
Sbjct: 481 DQAPESMKSLGTSYSMTSLGIGNFLSSFLLTTVSHITKKHGHHGWILNNLNASHLDYYYA 540

Query: 543 FFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVL 575
           FFAILN LNF+FF+VV K+YVYKAEV+DSMEVL
Sbjct: 541 FFAILNFLNFIFFIVVTKYYVYKAEVTDSMEVL 573

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099963|ref|XP_002311689.1| predicted protein [Populus trichocarpa] gi|222851509|gb|EEE89056.1| predicted protein [Populus trichocarpa]

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/543 (80%), Positives = 481/543 (88%), Gaps = 1/543 (0%)

Query: 5   EGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKL 64
           E  +D+ TQDGTVDLKGNPV RSKRGGWRACSFVVVYEVFERMAY+GISSNLV+YLT KL
Sbjct: 6   ENGLDECTQDGTVDLKGNPVLRSKRGGWRACSFVVVYEVFERMAYYGISSNLVVYLTKKL 65

Query: 65  HHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLS 124
           H GTV+S+NNVTNW GTIW+TPI GA VA+A+LGRYWTF+ A   YL+GM +L LSVSL 
Sbjct: 66  HEGTVRSSNNVTNWVGTIWMTPILGAYVADAHLGRYWTFLTASVIYLLGMSLLTLSVSLP 125

Query: 125 GLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEK 184
            L+PPPC D NS +CRKAST+QL  FF ALYTLAVGTGGTKPNI TI ADQFD+F PKEK
Sbjct: 126 ALRPPPCKDANSDNCRKASTMQLAVFFGALYTLAVGTGGTKPNISTIGADQFDDFHPKEK 185

Query: 185 AHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYR 244
           AHKLSFFNWWMFSIFFGTL  NTVLVYIQD+VGWALGYGLP LGL I++AIFLAGTP+YR
Sbjct: 186 AHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWALGYGLPTLGLLISVAIFLAGTPYYR 245

Query: 245 HKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFN 304
           H+ P GSPFTRMAKVIVAA+RK  V +P DP+ELYELDLE YA+ GK+RI ST  LRF  
Sbjct: 246 HRLPTGSPFTRMAKVIVAALRKSKVSVPSDPKELYELDLEEYAKGGKFRIDSTPTLRFLT 305

Query: 305 KAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRA 364
           KAAVKTG T+PW+LCSV+QVEET QML MIPIL+ATFVPSTM+AQINTLFVKQGTTLDR 
Sbjct: 306 KAAVKTGRTDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINTLFVKQGTTLDRN 365

Query: 365 IGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHII 424
           IG SFKIPPASL GFVTLSMLVCVVLYDR FV I RRWTKNPRGITLLQRMGIGLV HII
Sbjct: 366 IG-SFKIPPASLVGFVTLSMLVCVVLYDRFFVSIARRWTKNPRGITLLQRMGIGLVFHII 424

Query: 425 IMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQ 484
           IM+ AS  ER+RLSVA++HG+VE G Q+PLTIFI+LPQFVLMG ADAFLEVAK+EFFYDQ
Sbjct: 425 IMIAASLIERHRLSVAREHGLVENGGQIPLTIFILLPQFVLMGVADAFLEVAKLEFFYDQ 484

Query: 485 APESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFF 544
           APESMKSLGTSYS T+LG+GNFLSSFLLSTVSDITK+HGH+GWILNNLN  HLDYYYAFF
Sbjct: 485 APESMKSLGTSYSTTSLGIGNFLSSFLLSTVSDITKKHGHRGWILNNLNASHLDYYYAFF 544

Query: 545 AIL 547
           AIL
Sbjct: 545 AIL 547

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441053|ref|XP_003590804.1| Peptide transporter PTR3-A [Medicago truncatula] gi|355479852|gb|AES61055.1| Peptide transporter PTR3-A [Medicago truncatula]

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/582 (74%), Positives = 499/582 (85%), Gaps = 5/582 (0%)

Query: 4   EEGNI--DDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLT 61
           EEG +  ++YT+DGTV+LKG PV RSK GGW+ACSFVVVYEVFERMAY+GISSNL++  T
Sbjct: 2   EEGRVVKEEYTEDGTVNLKGKPVLRSKTGGWKACSFVVVYEVFERMAYYGISSNLILLFT 61

Query: 62  DKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSV 121
            KLH GTV ++NNVTNW GTIW+TPI GA VA+A+LGR+WTF+IA F YL GM +L L+V
Sbjct: 62  KKLHQGTVTASNNVTNWVGTIWMTPILGAYVADAHLGRFWTFLIASFIYLSGMSLLTLAV 121

Query: 122 SLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEP 181
           SL  LKPP C++++   C+K STLQL  F+ ALYTLA+GTGGTKPNI TI ADQFD+F P
Sbjct: 122 SLPTLKPPECHELDVTKCKKLSTLQLAVFYGALYTLAIGTGGTKPNISTIGADQFDDFHP 181

Query: 182 KEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTP 241
           KEK+HKLSFFNWWMFSIFFGTL  NTVLVYIQD+VGW LGY LP LGLAI+I IFL GTP
Sbjct: 182 KEKSHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYALPTLGLAISIMIFLGGTP 241

Query: 242 FYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGK--YRIGSTQN 299
           FYRHK PAGS FTRMA+VIVA++RK  VP+P D ++LYELD+E YA++G   YRI ST  
Sbjct: 242 FYRHKLPAGSTFTRMARVIVASLRKWKVPVPDDTKKLYELDMEEYAKKGSNTYRIDSTPT 301

Query: 300 LRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGT 359
           LRF +KA+VKTG+T+PW+LC+V+ VEET QML MIPILVATFVPSTM+AQ+NTLFVKQGT
Sbjct: 302 LRFLDKASVKTGSTSPWMLCTVTHVEETKQMLRMIPILVATFVPSTMMAQVNTLFVKQGT 361

Query: 360 TLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGL 419
           TLDR IG SFKIPPASL  FVTLS+LVCVVLYDR FVRI +R TKNPRGITLLQRMGIGL
Sbjct: 362 TLDRHIG-SFKIPPASLAAFVTLSLLVCVVLYDRFFVRIMQRLTKNPRGITLLQRMGIGL 420

Query: 420 VIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIE 479
           V+H IIMV+AS TE YRL VAK+HG+VE G QVPL+IFI+LPQF+LMGTADAFLEVAKIE
Sbjct: 421 VLHTIIMVVASVTENYRLRVAKEHGLVESGGQVPLSIFILLPQFILMGTADAFLEVAKIE 480

Query: 480 FFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDY 539
           FFYDQAPESMKS+GTSYS TTLGVGNF+SSFLLSTVS IT+ HGHKGWILNNLN  HLDY
Sbjct: 481 FFYDQAPESMKSIGTSYSSTTLGVGNFISSFLLSTVSHITQEHGHKGWILNNLNDSHLDY 540

Query: 540 YYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKR 581
           YYAFFA+LN LN  FF  V +FYVY+AEVSDS+++L  ELK 
Sbjct: 541 YYAFFAVLNFLNLAFFAFVTRFYVYRAEVSDSIDMLANELKE 582

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458852|ref|XP_004147160.1| PREDICTED: peptide transporter PTR3-A-like [Cucumis sativus] gi|449498602|ref|XP_004160581.1| PREDICTED: peptide transporter PTR3-A-like [Cucumis sativus]

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/581 (71%), Positives = 502/581 (86%), Gaps = 1/581 (0%)

Query: 1   MSGEEGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYL 60
           M  EEG  DDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMA++GISSNL++YL
Sbjct: 1   MGVEEGLADDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAFYGISSNLLIYL 60

Query: 61  TDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALS 120
           T++LH GTV +ANNVTNW G +W+TPI GA +A+AYLGR+WTF++A   YL GM +L ++
Sbjct: 61  TNRLHQGTVVAANNVTNWVGAVWMTPILGAYIADAYLGRFWTFIVASIIYLSGMSLLTMA 120

Query: 121 VSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFE 180
           VSL  L+PPPC D  S  C KAS+LQL  +F ALY LA+GTGGTKPNI TI ADQFD+F 
Sbjct: 121 VSLPTLRPPPCADPTSGHCEKASSLQLAVYFGALYILAIGTGGTKPNISTIGADQFDDFH 180

Query: 181 PKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGT 240
           PKEK  KLSFFNWWMFSIFFGTL  N +LVYIQD++GW LGYGLP LGLAI+I IF+AG 
Sbjct: 181 PKEKKQKLSFFNWWMFSIFFGTLFANIILVYIQDNIGWTLGYGLPTLGLAISIGIFVAGI 240

Query: 241 PFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNL 300
           PFYRHK PAGSPF+RM KV+VAAIRKR +PLP D +ELYELDLE Y ++ K+R+ +T +L
Sbjct: 241 PFYRHKVPAGSPFSRMGKVLVAAIRKRKLPLPRDVKELYELDLEEYTKKRKFRMEATPSL 300

Query: 301 RFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTT 360
            F NKA++KTG+T+PW LC+V++VEET QM+ MIPIL ATFVPS MLAQ+NTLF+KQGTT
Sbjct: 301 SFLNKASIKTGSTHPWRLCTVTEVEETKQMIRMIPILFATFVPSIMLAQVNTLFIKQGTT 360

Query: 361 LDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLV 420
           L+R IG +F+IPPASL+GFVT+S+L+ + LYDR FV+I R++TKNPRGITLLQRMGIG+V
Sbjct: 361 LNRKIG-NFEIPPASLSGFVTVSLLISIGLYDRVFVKIMRKFTKNPRGITLLQRMGIGIV 419

Query: 421 IHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEF 480
           +H++IMV+ S  ER RL+VAK+HG+V+ G QVPL+IFI+LPQF+LMGTADAF+EV+KIEF
Sbjct: 420 LHMLIMVVCSLVERRRLAVAKEHGVVQSGAQVPLSIFILLPQFILMGTADAFMEVSKIEF 479

Query: 481 FYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYY 540
           FYDQAPESMKSLGTSYS T +G GNFLSSFLLSTV+++T+R+G KGWILNNLN  HLDYY
Sbjct: 480 FYDQAPESMKSLGTSYSTTAIGTGNFLSSFLLSTVANLTRRNGRKGWILNNLNASHLDYY 539

Query: 541 YAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKR 581
           Y FFAILN LNF+FFLVV+++YVYKAEVSDS+ +LTEELK 
Sbjct: 540 YGFFAILNFLNFIFFLVVSRYYVYKAEVSDSIRLLTEELKE 580

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576503|ref|XP_003556370.1| PREDICTED: peptide transporter PTR3-A-like [Glycine max]

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/591 (72%), Positives = 499/591 (84%), Gaps = 4/591 (0%)

Query: 1   MSGEEGNID--DYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVM 58
           M+ EEG ++  DYTQDGTV++KG P+ RSK GGW+ACSFVVVYEVFERMAY+GISSNL++
Sbjct: 1   MTMEEGRVENEDYTQDGTVNIKGKPILRSKSGGWKACSFVVVYEVFERMAYYGISSNLIL 60

Query: 59  YLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLA 118
           YLT KLH GTV SANNVTNW GTIW+TPI GA VA+A+LGRYWTFVIA   YL GM +L 
Sbjct: 61  YLTTKLHQGTVSSANNVTNWVGTIWMTPILGAYVADAFLGRYWTFVIASTIYLSGMSLLT 120

Query: 119 LSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDE 178
           L+VSL  LKPP C   +   C KASTLQL  F+ ALYTLAVGTGGTKPNI TI ADQFD+
Sbjct: 121 LAVSLPSLKPPQCFVKDVTKCAKASTLQLAVFYGALYTLAVGTGGTKPNISTIGADQFDD 180

Query: 179 FEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA 238
           F PKEK HKLSFFNWWMFSIFFGTL  N+VLVYIQD+VGW LGY LP LGL ++I IF+A
Sbjct: 181 FHPKEKLHKLSFFNWWMFSIFFGTLFANSVLVYIQDNVGWTLGYALPTLGLLVSIMIFVA 240

Query: 239 GTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQ 298
           GTPFYRHK PAGS FTRMA+V+VAA+RK  VP+P D +ELYELD E YA++G YRI  T 
Sbjct: 241 GTPFYRHKVPAGSTFTRMARVVVAALRKSKVPVPSDSKELYELDKEEYAKKGSYRIDHTP 300

Query: 299 NLRFFNKAAVKTGA-TNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQ 357
            L+F +KA VKT + T+ W LC+V+QVEET QM+ MIPILVATFVPSTM+AQINTLFVKQ
Sbjct: 301 TLKFLDKACVKTDSNTSAWTLCTVTQVEETKQMIRMIPILVATFVPSTMMAQINTLFVKQ 360

Query: 358 GTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGI 417
           GTTLDR +G SFKIPPASL  FVT+S+LVC+VLYDR FV+I +R+TKNPRGITLLQRMGI
Sbjct: 361 GTTLDRHLG-SFKIPPASLAAFVTVSLLVCIVLYDRFFVKIMQRFTKNPRGITLLQRMGI 419

Query: 418 GLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAK 477
           GLVIH +IM+IAS TE YRL VA++HG+VE G QVPL+IFI+LPQF+LMGTADAFLEVAK
Sbjct: 420 GLVIHTLIMIIASGTESYRLKVAREHGVVESGGQVPLSIFILLPQFILMGTADAFLEVAK 479

Query: 478 IEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHL 537
           IEFFYDQ+PE MKS+GTSYS TTLG+GNF+SSFLLSTVS++TK++GHKGWILNNLN  HL
Sbjct: 480 IEFFYDQSPEHMKSIGTSYSTTTLGLGNFISSFLLSTVSNVTKKNGHKGWILNNLNESHL 539

Query: 538 DYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKRLWLTDSV 588
           DYYYAFFAILN LN +FF  V +FYVY+ EVSDS++ L +ELK   +++ V
Sbjct: 540 DYYYAFFAILNFLNLIFFAYVTRFYVYRVEVSDSIDKLAKELKEKTVSNVV 590

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501795|ref|XP_003519709.1| PREDICTED: peptide transporter PTR3-A-like [Glycine max]

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/580 (73%), Positives = 488/580 (84%), Gaps = 3/580 (0%)

Query: 4   EEGNI-DDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTD 62
           EEG + ++YTQDGTVDLKG P+ +SK GGW ACSFVVVYE+FERMAY+GISSNL++YLT 
Sbjct: 2   EEGRVVNEYTQDGTVDLKGKPILKSKSGGWNACSFVVVYEIFERMAYYGISSNLILYLTR 61

Query: 63  KLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVS 122
           KLH GTV S+NNVTNW GTIW+TPI GA VA+A+LGRYWTFVIA   YLMGM +L LSVS
Sbjct: 62  KLHQGTVTSSNNVTNWVGTIWITPILGAYVADAHLGRYWTFVIASVIYLMGMSLLTLSVS 121

Query: 123 LSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPK 182
           L  LKPP C++++   C KAS L L  F+ ALYTLA+GTGGTKPNI TI ADQFD+F+ K
Sbjct: 122 LPSLKPPECHELDVTKCEKASILHLAVFYGALYTLALGTGGTKPNISTIGADQFDDFDSK 181

Query: 183 EKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPF 242
           EK  KLSFFNWWMFSIF GTL  N+VLVYIQD+VGW LGY LP LGLAI+I IFLAGTPF
Sbjct: 182 EKKLKLSFFNWWMFSIFIGTLFANSVLVYIQDNVGWTLGYALPTLGLAISIIIFLAGTPF 241

Query: 243 YRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRF 302
           YRHK P GSPFT+MAKVIVAAIRK  V +P D +ELYELDLE YA++G+ RI ST  LR 
Sbjct: 242 YRHKLPTGSPFTKMAKVIVAAIRKWKVHIPSDTKELYELDLEEYAKKGRVRIDSTPTLRL 301

Query: 303 FNKAAVKTGATNP-WILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTL 361
            NKA V T +T   W+L  V+ VEET QML MIPIL AT +PS M+AQI TLFVKQG TL
Sbjct: 302 LNKACVNTDSTTSGWMLSPVTHVEETKQMLRMIPILAATLIPSAMVAQIGTLFVKQGITL 361

Query: 362 DRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVI 421
           DR IG SF IPPASL  FVTLSMLVCVVLYDR FV+I +R+TKNPRGITLLQR+GIGL+I
Sbjct: 362 DRGIG-SFNIPPASLATFVTLSMLVCVVLYDRFFVKIMQRFTKNPRGITLLQRIGIGLII 420

Query: 422 HIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFF 481
           HI+IMV+AS TERYRL VAK+HG+VE G QVPL+IFI+LPQ+VLMG ADAF+EVAKIEFF
Sbjct: 421 HIVIMVVASLTERYRLRVAKEHGLVENGGQVPLSIFILLPQYVLMGAADAFVEVAKIEFF 480

Query: 482 YDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYY 541
           YDQAPESMKSLGTSYSMTTLG+GNFLS+FLL+T+S +TK+HGH+GW+LNNLN  HLDYYY
Sbjct: 481 YDQAPESMKSLGTSYSMTTLGIGNFLSTFLLTTISHVTKKHGHRGWVLNNLNASHLDYYY 540

Query: 542 AFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKR 581
           A  AILN LNF+FF+VV KFYVY+AE+SDS++VL EELK 
Sbjct: 541 ALLAILNFLNFIFFMVVTKFYVYRAEISDSIKVLEEELKE 580

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533306|ref|XP_003535206.1| PREDICTED: peptide transporter PTR3-A-like [Glycine max]

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/580 (73%), Positives = 491/580 (84%), Gaps = 3/580 (0%)

Query: 4   EEGNI-DDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTD 62
           EEG +  +YT+DGTVDLKG P+ +SK GGW+ACSFVVVYE+FERMAY+GISSNL++YLT 
Sbjct: 2   EEGRVVSEYTKDGTVDLKGKPILKSKSGGWKACSFVVVYEIFERMAYYGISSNLILYLTR 61

Query: 63  KLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVS 122
           KLH GTV S+NNVTNW GTIW+TPI GA VA+A+LGR+WTF+IA   YL+GM +L LSVS
Sbjct: 62  KLHQGTVTSSNNVTNWVGTIWITPILGAYVADAHLGRFWTFLIASVIYLLGMSLLTLSVS 121

Query: 123 LSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPK 182
           L  LKPP C++++   C KASTL L  F+ ALYTLA+GTGGTKPNI TI ADQFD+F+ K
Sbjct: 122 LPSLKPPECHELDVTKCEKASTLHLAVFYGALYTLALGTGGTKPNISTIGADQFDDFDSK 181

Query: 183 EKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPF 242
           EK  KLSFFNWWMFSIF GTL  N+VLVYIQD+VGW LGY LP LGLAI+I IFLAGTPF
Sbjct: 182 EKKLKLSFFNWWMFSIFIGTLFANSVLVYIQDNVGWTLGYALPTLGLAISIIIFLAGTPF 241

Query: 243 YRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRF 302
           YRHK P GSPFT+MAKVIVAAIRK  V +P D +ELYELDLE YA+RG+ RI ST  LRF
Sbjct: 242 YRHKLPTGSPFTKMAKVIVAAIRKWKVHIPSDTKELYELDLEEYAKRGRVRIDSTPTLRF 301

Query: 303 FNKAAVKT-GATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTL 361
            NKA V T  +T+ W L  V+ VEET QML MIPIL AT +PS M+AQI TLFVKQG TL
Sbjct: 302 LNKACVNTDSSTSGWKLSPVTHVEETKQMLRMIPILAATLIPSAMVAQIGTLFVKQGITL 361

Query: 362 DRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVI 421
           DR IG SF IPPASL  FVTLSMLVCVVLYDR FV+I +R+TKNPRGITLLQR+GIGL+I
Sbjct: 362 DRGIG-SFNIPPASLATFVTLSMLVCVVLYDRFFVKIMQRFTKNPRGITLLQRIGIGLII 420

Query: 422 HIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFF 481
           HI+IMVIAS TERYRL VAK+HG++E G QVPL+IFI+LPQ+VLMG ADAF+EVAKIEFF
Sbjct: 421 HIVIMVIASLTERYRLRVAKEHGLLENGGQVPLSIFILLPQYVLMGAADAFVEVAKIEFF 480

Query: 482 YDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYY 541
           YDQAPESMKSLGTSYSMTTLG+GNFLS+FLL+T+S +TK+HGH+GW+LNNLN  HLDYYY
Sbjct: 481 YDQAPESMKSLGTSYSMTTLGIGNFLSTFLLTTISHVTKKHGHRGWVLNNLNASHLDYYY 540

Query: 542 AFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKR 581
           A  AILN++NFVFF+VV KFYVY+AE+SDS++VL EELK 
Sbjct: 541 ALLAILNLVNFVFFMVVTKFYVYRAEISDSIKVLEEELKE 580

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575829|ref|XP_002528812.1| oligopeptide transporter, putative [Ricinus communis] gi|223531724|gb|EEF33546.1| oligopeptide transporter, putative [Ricinus communis]

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/545 (78%), Positives = 479/545 (87%), Gaps = 1/545 (0%)

Query: 40  VYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGR 99
           VYEVFERMAY+GISSNLV+YLT KLH GTVKSANNVTNW GTIW+TPI GA VA+A+LGR
Sbjct: 8   VYEVFERMAYYGISSNLVLYLTKKLHEGTVKSANNVTNWVGTIWMTPILGAYVADAHLGR 67

Query: 100 YWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAV 159
           YWTFVI+   YL GM VL LSVSL  L+PPPC + N  DCRKAS LQL  FF ALYTLA+
Sbjct: 68  YWTFVISCIIYLSGMSVLTLSVSLPALRPPPCKEANVDDCRKASPLQLAVFFGALYTLAI 127

Query: 160 GTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWA 219
           GTGGTKPNI TI ADQFD+F+PKEK HKLSFFNWWMFSIFFGTL  NTVLVYIQD+VGWA
Sbjct: 128 GTGGTKPNISTIGADQFDDFDPKEKDHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWA 187

Query: 220 LGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELY 279
           LGYGLP LGL I+I+IFLAGTP+YRHK PAGSPFTRMA  IVAAIRK  +P+P DP+ELY
Sbjct: 188 LGYGLPTLGLLISISIFLAGTPYYRHKIPAGSPFTRMAMAIVAAIRKIKMPIPNDPKELY 247

Query: 280 ELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVA 339
           ELDLE YA+ GK+RI ST  LRF NKAAV+TG+T+PW+LCSV+QVEET QML MIP+L+A
Sbjct: 248 ELDLEEYARNGKFRIDSTPGLRFLNKAAVRTGSTDPWMLCSVTQVEETKQMLRMIPVLIA 307

Query: 340 TFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRIT 399
           TFVPSTM+AQI+TLFVKQGTTLDR IG SFKIPPASL+GFVT++ML+ VVLYDR FVRIT
Sbjct: 308 TFVPSTMIAQISTLFVKQGTTLDRNIG-SFKIPPASLSGFVTIAMLISVVLYDRFFVRIT 366

Query: 400 RRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIM 459
           R+ T NPRG+TLLQRMGIG+V HIIIM+IAS  ERYRLSVAK+HG+VE G QVPLTIFI+
Sbjct: 367 RKLTNNPRGVTLLQRMGIGIVFHIIIMIIASLIERYRLSVAKEHGLVENGGQVPLTIFIL 426

Query: 460 LPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDIT 519
           LPQFVLMG ADAFLEVAK+EFFYDQAPESMKSLGTSYS T+LG+GNFLSSFLLSTVS +T
Sbjct: 427 LPQFVLMGMADAFLEVAKLEFFYDQAPESMKSLGTSYSTTSLGIGNFLSSFLLSTVSRLT 486

Query: 520 KRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEEL 579
            ++GH+GWILNNLN  HLDYYYAFFAILN  NF+FFLVV KFYVYKAE SDSMEVL E+L
Sbjct: 487 SKNGHQGWILNNLNASHLDYYYAFFAILNFFNFLFFLVVIKFYVYKAEASDSMEVLAEQL 546

Query: 580 KRLWL 584
           K + L
Sbjct: 547 KGMRL 551

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	596
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.969	0.993	0.629	1.5e-193
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.966	0.982	0.592	6.1e-181
TAIR|locus:2061843	583	AT2G40460 [Arabidopsis thalian	0.931	0.951	0.473	5.8e-137
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.931	0.973	0.421	2.6e-118
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.889	0.905	0.406	1.4e-110
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.872	0.881	0.401	4.9e-108
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.931	0.973	0.394	2.1e-107
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.437	0.478	0.420	5.1e-104
TAIR|locus:2084500	602	AT3G53960 [Arabidopsis thalian	0.926	0.916	0.376	2e-97
TAIR|locus:1006230253	555	AT3G54450 [Arabidopsis thalian	0.879	0.944	0.363	1.6e-93

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1875 (665.1 bits), Expect = 1.5e-193, P = 1.5e-193
 Identities = 366/581 (62%), Positives = 434/581 (74%)

Query:     1 MSGEEGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYL 60
             M+ EE   DDYT+DGTVDL+GNPVRRS RG W+ACSFVVVYEVFERMAY+GISSNL +Y+
Sbjct:     1 MTVEEVG-DDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYM 59

Query:    61 TDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALS 120
             T KLH GTVKS+NNVTNW GT W+TPI GA V +A LGRY TFVI+   Y  GM+VL LS
Sbjct:    60 TTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLS 119

Query:   121 VSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFE 180
             V++ G+KPP C+  N ++C KAS LQL  FF ALYTLA+GTGGTKPNI TI ADQFD F+
Sbjct:   120 VTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179

Query:   181 PKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVXXXXXXXXXXXXXXXXXXXXXXXT 240
             PKEK  KLSFFNWWMFSIFFGTL  NTVLVY+QD+V                       T
Sbjct:   180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239

Query:   241 PFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNL 300
             PFYRHK P GSPFT+MA+VIVA+ RK N P+  D    +EL    Y ++G + I  T +L
Sbjct:   240 PFYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSL 299

Query:   301 RFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTT 360
             RF ++A++KTG  + W LC+ ++VEET QML M+P+L  TFVPS MLAQINTLFVKQGTT
Sbjct:   300 RFLDRASLKTGTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTT 359

Query:   361 LDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRXXXXXX 420
             LDR +  SF IPPASL+GFVTLSML+ +VLYDR FV+ITR++T NPRGITLLQR      
Sbjct:   360 LDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLI 419

Query:   421 XXXXXXXXASFTERYRLSVAKDHGIVEK-GQQVPLTIFIMLPQFVLMGTADAFLEVAKIE 479
                     AS TERYRL VA DHG++ + G ++PLTIF +LPQFVLMG AD+FLEVAK+E
Sbjct:   420 FHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLE 479

Query:   480 FFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDY 539
             FFYDQAPESMKSLGTSYS T+L +GNF+SSFLLSTVS+ITK+ G +GWILNNLN   LDY
Sbjct:   480 FFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRG-RGWILNNLNESRLDY 538

Query:   540 YYAFFAIXXXXXXXXXXXXAKFYVYKAEVSDSMEVLTEELK 580
             YY FFA+             KFYVY+AEV+DS++V   E+K
Sbjct:   539 YYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 1756 (623.2 bits), Expect = 6.1e-181, P = 6.1e-181
 Identities = 343/579 (59%), Positives = 417/579 (72%)

Query:     1 MSGEEGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYL 60
             M+ EE   DDYT+DGTVDL+GN VRRS+ G W+ACSFVVVYEVFERMAY+GISSNLV+Y+
Sbjct:     1 MTVEEVG-DDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYM 59

Query:    61 TDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALS 120
             T KLH GTVKS+NNVTNW GT W+TPI GA VA+A+ GRY TFVI+   YL+GM +L LS
Sbjct:    60 TTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLS 119

Query:   121 VSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFE 180
             VSL GLKPP C+  N ++C KAS +QL  FF ALYTLA+GTGGTKPNI TI ADQFDEF+
Sbjct:   120 VSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179

Query:   181 PKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVXXXXXXXXXXXXXXXXXXXXXXXT 240
             PK+K HK SFFNWWMFSIFFGT    TVLVY+QD+V                       T
Sbjct:   180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239

Query:   241 PFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNL 300
               YRHK P GSPFT+MA+VIVA++RK   P+  D    YEL    YA +  + I ST +L
Sbjct:   240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSL 299

Query:   301 RFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTT 360
             RF N+A++KTG+T+ W LC++++VEET QML M+P+L  TFVPS MLAQI TLF+KQGTT
Sbjct:   300 RFLNRASLKTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTT 359

Query:   361 LDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRXXXXXX 420
             LDR + ++F IPPASL GF T SMLV +V+YDR FV+  R+ T NPRGITLLQR      
Sbjct:   360 LDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMI 419

Query:   421 XXXXXXXXASFTERYRLSVAKDHGIVEK-GQQVPLTIFIMLPQFVLMGTADAFLEVAKIE 479
                     AS TERYRL VA +HG+  +    +PL+IF +LPQ+VLMG ADAF+E+AK+E
Sbjct:   420 LHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLE 479

Query:   480 FFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDY 539
             FFYDQAPESMKSLGTSY+ T++ VG F+SS LLS+VS ITK+ G +GWI NNLN   LD 
Sbjct:   480 FFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQG-RGWIQNNLNESRLDN 538

Query:   540 YYAFFAIXXXXXXXXXXXXAKFYVYKAEVSDSMEVLTEE 578
             YY FFA+             +FY Y+A+V+ S  V  +E
Sbjct:   539 YYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQKE 577

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)]

 Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
 Identities = 267/564 (47%), Positives = 357/564 (63%)

Query:    11 YTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVK 70
             YTQDGTVDL+G PV  SK G WRACSF++ YE FERMA++GI+SNLV YLT +LH  T+ 
Sbjct:     7 YTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRLHEDTIS 66

Query:    71 SANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPP 130
             S  NV NW G +W+TPI GA +A++Y+GR+WTF  +   Y++GMI+L ++V++  L+P  
Sbjct:    67 SVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVKSLRPTC 126

Query:   131 CNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF 190
              N +    C KAS+LQ+  F+ +LYT+A+G GGTKPNI T  ADQFD +  +EK  K+SF
Sbjct:   127 ENGV----CNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKVSF 182

Query:   191 FNWWMFSIFFGTLLGNTVLVYIQDDVXXXXXXXXXXXXXXXXXXXXXXXTPFYRHKKPAG 250
             FNWWMFS F G L     LVYIQ+++                       TPFYRHK    
Sbjct:   183 FNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKVIKT 242

Query:   251 SPFTR-MAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVK 309
                 + + +V +AA + R +  P D  ELYELD  YY   GK+++  T   RF +KAA+K
Sbjct:   243 DNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAAIK 302

Query:   310 TGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSF 369
             T +  P   C+V++VE   ++L +I I + T +PST+ AQ+NTLFVKQGTTLDR IGS+F
Sbjct:   303 TSSRVP---CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNF 359

Query:   370 KIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRXXXXXXXXXXXXXXA 429
             +IP ASL  FVTLSML+ V +YD+ FV   R+ T NPRGITLLQR              A
Sbjct:   360 QIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAIAIA 419

Query:   430 SFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESM 489
             S  E  R+ V K+  I    Q VP++IF +LPQ+ L+G  D F  +  +EFFYDQ+PE M
Sbjct:   420 SAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEM 479

Query:   490 KSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAIXXX 549
             +SLGT++  + +G+GNFL+SFL++ +  IT + G K WI NNLN   LDYYY F  +   
Sbjct:   480 QSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYYGFLVVISI 539

Query:   550 XXXXXXXXXAKFYVYKAEVSDSME 573
                      A  YVYK++  D+ E
Sbjct:   540 VNMGLFVWAASKYVYKSD-DDTKE 562

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
 Identities = 239/567 (42%), Positives = 343/567 (60%)

Query:     9 DDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGT 68
             D YTQDGTVD+  NP  + K G W+AC F++  E  ER+AY+G+ +NLV YL  +L+ G 
Sbjct:     5 DVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64

Query:    69 VKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKP 128
               +ANNVTNW GT ++TP+ GA +A+AYLGRYWT     F Y+ GM +L LS S+ GLKP
Sbjct:    65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124

Query:   129 PPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL 188
               CN   +  C   S+ Q   FF ALY +A+GTGG KP + +  ADQFDE +  EK  K 
Sbjct:   125 GNCN---ADTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKS 180

Query:   189 SFFNWWMFSIFFGTLLGNTVLVYIQDDVXXXXXXXXXXXXXXXXXXXXXXXTPFYRHKKP 248
             SFFNW+ FSI  G L+  TVLV+IQ +V                       + FYR ++P
Sbjct:   181 SFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRP 240

Query:   249 AGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAV 308
              GSP TR+ +VIVAA RK +V +P D   L+E   +    +G  ++  T NL+FF+KAAV
Sbjct:   241 GGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAV 300

Query:   309 -------KTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTL 361
                    K G  NPW LCSV+QVEE   ++ ++P+     V +T+ +Q++T+FV QG T+
Sbjct:   301 ESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTM 360

Query:   362 DRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRXXXXXXX 421
             D+ +G +F+IP ASL+ F T+S+L    +YD+  + + R++T+N RG T LQR       
Sbjct:   361 DQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVV 420

Query:   422 XXXXXXXASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFF 481
                    A   E  RL   K H   ++ +Q+ ++IF  +PQ++L+G A+ F  + ++EFF
Sbjct:   421 SIFAMITAGVLEVVRLDYVKTHNAYDQ-KQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFF 479

Query:   482 YDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYY 541
             YDQAP++M+SL ++ S+TT+ +GN+LS+ L++ V  ITK++G  GWI +NLN  HLDY++
Sbjct:   480 YDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFF 539

Query:   542 AFFAIXXXXXXXXXXXXAKFYVYKAEV 568
                A             +K Y YK  V
Sbjct:   540 YLLATLSFLNFLVYLWISKRYKYKKAV 566

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 221/543 (40%), Positives = 328/543 (60%)

Query:    11 YTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVK 70
             Y +DG+VD  GNP  + K G W+AC F++  E  ER+AY+GI+ NL+ YLT KLH G V 
Sbjct:    24 YAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVS 83

Query:    71 SANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPP 130
             +A NVT W GT ++TP+ GA +A+AY GRYWT       Y +GM  L LS S+  LKP  
Sbjct:    84 AATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE 143

Query:   131 C-NDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS 189
             C  D     C  A+  Q   FF  LY +A+GTGG KP + +  ADQFD+ + +E+  K S
Sbjct:   144 CIGDF----CPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKAS 199

Query:   190 FFNWWMFSIFFGTLLGNTVLVYIQDDVXXXXXXXXXXXXXXXXXXXXXXXTPFYRHKKPA 249
             FFNW+ FSI  G L+ +++LV+IQ++                        TP YR +KP 
Sbjct:   200 FFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPG 259

Query:   250 GSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAV- 308
             GSP TR+++V+VA+ RK +V +P D   LYE   +  A  G  +I  T + ++ +KAAV 
Sbjct:   260 GSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVI 319

Query:   309 -----KTGA-TNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLD 362
                  K+G  +N W LC+V+QVEE   ++ M PI  +  + S + AQ++T+FV+QG  ++
Sbjct:   320 SEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMN 379

Query:   363 RAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRXXXXXXXX 422
               IGS F++PPA+L  F T S+++ V LYDR  V + R++T   +G T +QR        
Sbjct:   380 CKIGS-FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVS 438

Query:   423 XXXXXXASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFY 482
                   A+  E  RL +A D G+VE G  VP+++   +PQ+ ++G A+ F  + ++EFFY
Sbjct:   439 VLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFY 498

Query:   483 DQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYA 542
             DQ+P++M+SL ++ ++ T  +GN+LSS +L+ V+  T R+G +GWI +NLN  HLDY++ 
Sbjct:   499 DQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFW 558

Query:   543 FFA 545
               A
Sbjct:   559 LLA 561

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
 Identities = 215/536 (40%), Positives = 323/536 (60%)

Query:    13 QDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSA 72
             +DG++D+ GNP  + K G W+AC F++  E  ER+AY+GI+ NL+ Y T +LH   V +A
Sbjct:    37 EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96

Query:    73 NNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCN 132
             ++V  W GT ++TP+ GA +A++Y GRYWT       Y +GM +L LS SL  LKP  C 
Sbjct:    97 SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156

Query:   133 DINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN 192
              + +  C  A+T+Q   FF  LY +A+GTGG KP + +  ADQFD+ +P+E+  K SFFN
Sbjct:   157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216

Query:   193 WWMFSIFFGTLLGNTVLVYIQDDVXXXXXXXXXXXXXXXXXXXXXXXTPFYRHKKPAGSP 252
             W+ FSI  G+ + +T+LV++Q++V                       TP YR +KP GSP
Sbjct:   217 WFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSP 276

Query:   253 FTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAV---- 308
              TR+ +V+VAA RK  + LP D   LYE   +     G  +I  T   +F +KAAV    
Sbjct:   277 ITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEY 336

Query:   309 --KTGA-TNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAI 365
               K+GA +NPW LC+V+QVEE   ++ M PI  +  V S + +QI+TLFV+QG +++R I
Sbjct:   337 ESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRII 396

Query:   366 GSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRXXXXXXXXXXX 425
               SF+IPPAS   F TL +L+ + +YDR  V   RR+T  P+G+T LQR           
Sbjct:   397 -RSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLS 455

Query:   426 XXXASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQA 485
                A+  E  RL +A+D         V ++IF  +PQ++LMG A+ F  + ++EFFYD++
Sbjct:   456 IAAAAIVETVRLQLAQDF--------VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDES 507

Query:   486 PESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYY 541
             P++M+S+ ++ ++    VG++LSS +L+ V+  T   G  GW+ ++LN  HLDY++
Sbjct:   508 PDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFF 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
 Identities = 224/568 (39%), Positives = 335/568 (58%)

Query:     5 EGNIDDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKL 64
             E + D YT+DGT+D+   P  ++K G W+AC F++  E  ER+AY+G+S+NL+ YL  ++
Sbjct:     2 EDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQM 61

Query:    65 HHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLS 124
             +   V ++ +V+NW GT + TP+ GA +A+AYLGRYWT       Y+ GM +L +S S+ 
Sbjct:    62 NMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVP 121

Query:   125 GLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEK 184
             GL P  C+    + C  A+  Q    F ALY +A+GTGG KP + +  ADQFD+ + KEK
Sbjct:   122 GLTPT-CS---GETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176

Query:   185 AHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVXXXXXXXXXXXXXXXXXXXXXXXTPFYR 244
               K SFFNW+ F I  G ++ ++VLV+IQ +V                       + FYR
Sbjct:   177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236

Query:   245 HKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFN 304
              +KP GSP TRM +VIVA+ RK  V +P D   LYE      +  G  ++  T+ L FF+
Sbjct:   237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFD 296

Query:   305 KAAVKT-----GA--TNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQ 357
             KAAV+T     GA  ++ W LC+V+QVEE   ++ ++PI     V +++ +Q+ T+FV Q
Sbjct:   297 KAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQ 356

Query:   358 GTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRXXX 417
             G TLD+ +G +FKIP ASL+ F TLS+L    +YD+  V   R++T + RG T LQR   
Sbjct:   357 GNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGI 416

Query:   418 XXXXXXXXXXXASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAK 477
                        A   E  RL+  + H +  + + +P+TIF  +PQ+ L+G A+ F  + +
Sbjct:   417 GLVISIFSMVSAGILEVARLNYVQTHNLYNE-ETIPMTIFWQVPQYFLVGCAEVFTFIGQ 475

Query:   478 IEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHL 537
             +EFFYDQAP++M+SL ++ S+T +  GN+LS+FL++ V+ +T+  G  GWI  NLN  HL
Sbjct:   476 LEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHL 535

Query:   538 DYYYAFFAIXXXXXXXXXXXXAKFYVYK 565
             DY++   A             AK+Y YK
Sbjct:   536 DYFFWLLAGLSFLNFLVYLWIAKWYTYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 5.1e-104, Sum P(2) = 5.1e-104
 Identities = 111/264 (42%), Positives = 156/264 (59%)

Query:    11 YTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVK 70
             Y +DG++D+ GNP  +   G W+AC F+   E  ER+AY+GI+ NL+ Y T++LH   V 
Sbjct:    25 YAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVS 84

Query:    71 SANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPP 130
             +A +V  W GT ++TP+ GA +A+AY GRYWT       Y  GM+ L LS S+ GLKP  
Sbjct:    85 AARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAE 144

Query:   131 CNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF 190
             C  I S  C  A+ +Q    F+ LY +A+GTGG KP + +  ADQFD+ +P E+  K SF
Sbjct:   145 C--IGSL-CPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201

Query:   191 FNWWMFSIFFGTLLGNTVLVYIQDDVXXXXXXXXXXXXXXXXXXXXXXXTPFYRHKKPAG 250
             FNW+ F+I  G  + +TVLV+IQ++                        TP YR +KP G
Sbjct:   202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261

Query:   251 SPFTRMAKVIVAAIRKRNVPLPID 274
             SP T + +V+VAA RK N+ +P D
Sbjct:   262 SPITSVCQVLVAAYRKSNLKVPED 285

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 216/574 (37%), Positives = 320/574 (55%)

Query:    14 DGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSAN 73
             D + D +G    R++ G WRA  F++  E  ER++Y GIS+NLV+YLT  LH     +  
Sbjct:    23 DSSTDSRGEIPLRAQTGAWRAALFIIGIEFSERLSYFGISTNLVVYLTTILHQDLKMAVK 82

Query:    74 NVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCND 133
             N   W G   + P+ G  VA+AYLGRY T ++A   YLMG+I+L LS  + GLK   C++
Sbjct:    83 NTNYWSGVTTLMPLLGGFVADAYLGRYGTVLLATTIYLMGLILLTLSWFIPGLKA--CHE 140

Query:   134 INSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW 193
                 + RKA  +    FF A+Y +++GTGG KP++ +  ADQF++  P+E+  K+S+FNW
Sbjct:   141 DMCVEPRKAHEI---AFFIAIYLISIGTGGHKPSLESFGADQFEDGHPEERKMKMSYFNW 197

Query:   194 WMFSIFFGTLLGNTVLVYIQDDVXXXXXXXXXXXXXXXXXXXXXXXTPFYRHKKPAGSPF 253
             W   +  G L   TV+VYI+D +                        PFYR++ P+GSP 
Sbjct:   198 WNAGLCAGILTAVTVIVYIEDRIGWGVASIILTIVMATSFFIFRIGKPFYRYRAPSGSPL 257

Query:   254 TRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAV----- 308
             T M +V VAAI KRN+P P D   L+EL  E Y  +G+  + S++NL+F +KAAV     
Sbjct:   258 TPMLQVFVAAIAKRNLPCPSDSSLLHELTNEEYT-KGRL-LSSSKNLKFLDKAAVIEDRN 315

Query:   309 ---KTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAI 365
                K    +PW L +V++VEE   ++ MIPI   T        Q +TLF+KQ   +DR I
Sbjct:   316 ENTKAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHI 375

Query:   366 -GSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRXXXXXXXXXX 424
              G+SF +PPASL   + LS+++ V +Y++  V + RR T N RGI++LQR          
Sbjct:   376 TGTSFIVPPASLFSLIALSIIITVTIYEKLLVPLLRRATGNERGISILQRIGVGMVFSLF 435

Query:   425 XXXXASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQ 484
                 A+  E+ RL  AK+H +    + + L+   + PQF+++G ADAF  V   E+FYDQ
Sbjct:   436 AMIIAALIEKKRLDYAKEHHM---NKTMTLSAIWLAPQFLVLGVADAFTLVGLQEYFYDQ 492

Query:   485 APESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD-ITKRHGHKGWILNNLNVCHLDYYYAF 543
              P+SM+SLG ++ ++ LG  +F+++ L+ TVSD + +    KGW   +LN   LD +Y  
Sbjct:   493 VPDSMRSLGIAFYLSVLGAASFVNNLLI-TVSDHLAEEISGKGWFGKDLNSSRLDRFYWM 551

Query:   544 FAIXXXXXXXXXXXXAKFYVYKAEVSDSMEVLTE 577
              A             A  Y YK  V  S+ V+ +
Sbjct:   552 LAALTAANICCFVIVAMRYTYKT-VQPSLAVVAD 584

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 201/553 (36%), Positives = 307/553 (55%)

Query:    24 VRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIW 83
             + +  +GGW A  F++V E+ ER A++G++SNL+ +LT++L   T  +A N+  W G   
Sbjct:     8 INKRTKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSC 67

Query:    84 VTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKAS 143
             + PI GA +A++ LGR+ T ++  F YL+G+++L LSV++                  A 
Sbjct:    68 MFPILGAFLADSILGRFKTVLLTSFIYLLGIVMLPLSVTVV-----------------AR 110

Query:   144 TLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTL 203
              ++   FF ALY +AVG GG KP ++T AADQF E   +EKA K SFFN+W  +I   + 
Sbjct:   111 RMREKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASS 170

Query:   204 LGNTVLVYIQDDVXXXXXXXXXXXXXXXXXXXXXXXTPFYRHKKPAGSPFTRMAKVIVAA 263
             +    L++IQ+ V                        P YR + P GSPFTR+A+V+VAA
Sbjct:   171 IAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAA 230

Query:   264 IRKRNVPLPIDPQEL-YELDLEYYAQRGK----YRIGSTQNLRFFNKAAV-----KTGAT 313
             ++K  +        L YE + E+  +       Y +  T   RF +KA +          
Sbjct:   231 LKKWRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNKNR 290

Query:   314 NPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPP 373
             NPW LC+V+QVEE   +L +IPI ++  +    L Q+NT F+KQG+ +DR IG+ F IPP
Sbjct:   291 NPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPP 350

Query:   374 ASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRXXXXXXXXXXXXXXASFTE 433
             A+    V +++L+ + LYDR FV + R+ T +  GIT LQR                  E
Sbjct:   351 AAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVE 410

Query:   434 RYRLSVAKDHGIVEKGQQV-PLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSL 492
               RL VA+DHG+++  ++V P++   +LPQ++L+G  D F  V   E FYDQ PE+M+S+
Sbjct:   411 AKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSI 470

Query:   493 GTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAIXXXXXX 552
             G +  ++ +GVG+F+S+ ++STV  I+K HG + W++NNLN  HLDYYY   A       
Sbjct:   471 GAAIFISVVGVGSFVSTGIISTVQTISKSHGEE-WLVNNLNRAHLDYYYWIIASLNAVSL 529

Query:   553 XXXXXXAKFYVYK 565
                   A  ++YK
Sbjct:   530 CFYLFIANHFLYK 542

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FNL7	PTR3_ARATH	No assigned EC number	0.6951	0.9597	0.9828	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	596
pfam00854	372	pfam00854, PTR2, POT family	6e-87
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-21
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	7e-18
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	8e-13
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	4e-12
PRK10207	489	PRK10207, PRK10207, dipeptide/tripeptide permease	1e-05
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	0.002
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.004

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  274 bits (703), Expect = 6e-87
 Identities = 130/403 (32%), Positives = 189/403 (46%), Gaps = 34/403 (8%)

Query: 100 YWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAV 159
           + T ++    Y +G ++L L      L P                +Q+  F+  LY +A+
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSP----------------VQVALFYIGLYLIAL 44

Query: 160 GTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWA 219
           GTGG KPN+    ADQFDE +   +     FF+W+ FSI  G+L+   +  Y+Q +VG+ 
Sbjct: 45  GTGGIKPNVSAFGADQFDETQDPRRD---GFFSWFYFSINAGSLIATIITPYLQQNVGYP 101

Query: 220 LGYGLPALGLAIAIAIFLAGTPFYRHK-KPAGSPFTRM-AKVIVAAIRKRNVPLPIDPQE 277
           LG+GLPA+G+ +A+ +FL G+  Y+ K  P GSPFT   A +I AA + R + LP D   
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW 161

Query: 278 LYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPIL 337
           LY    +Y  +        T  +        K  A           V     +L M+PI 
Sbjct: 162 LYWALEKYNKRSISQTKVHT-RVAVIFIPLPKFWALF----DQQGSVWLLQAILLMLPIW 216

Query: 338 VATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVR 397
               +P  M  Q+ TL V+Q  T+DR I   F+IPPAS   F  L++L+ + + D     
Sbjct: 217 AFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYP 276

Query: 398 ITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIF 457
           + R      RG+TL QR G+G+ I I+   +A+  E  R   A   G+   G  VPL I 
Sbjct: 277 LLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLFIL 332

Query: 458 IMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTT 500
             LP+  + G          +EF  D  P SM SL T  S   
Sbjct: 333 WSLPELFISGVG----LAGALEFAPDALPSSMMSLWTLLSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 98.5 bits (246), Expect = 1e-21
 Identities = 103/543 (18%), Positives = 197/543 (36%), Gaps = 89/543 (16%)

Query: 33  RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTN----WGGTIWVTPIF 88
           R    +   E++ER +Y+G+ + L++YL  +L  G      + T     +G  +++TPI 
Sbjct: 21  RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPII 80

Query: 89  GAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLG 148
           G  +A+  LG   T V+      +G +VLA+S                      S    G
Sbjct: 81  GGWLADRVLGTRRTIVLGAILMAIGHLVLAIS----------------------SVSGPG 118

Query: 149 TFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTV 208
             +  L  + VGTG  KPNI ++  + +    PK+   +   F  +   I  G+L+   +
Sbjct: 119 GLYIGLALIIVGTGLFKPNISSLLGELY----PKDDPRRDGGFTLFYMGINIGSLIAPII 174

Query: 209 LVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRN 268
              +  + GW +G+GL A+G+ I + IFL G    +                   I    
Sbjct: 175 TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKG------------------IGGVP 216

Query: 269 VPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILC-----SVSQ 323
            P P+    L  +            +    N   F+   +        I       S   
Sbjct: 217 DPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKV 276

Query: 324 VEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTT-LDRAIGSSFKIPPASLTGFVTL 382
            +E  ++LA IP+ +   +   +  Q+ +         ++R I   F++PPA        
Sbjct: 277 FDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPF 335

Query: 383 SMLVCVVLYDRCFVRITRRWTKNPRGITLLQ---RMGIGLVIHIIIMVIASFTERYRLSV 439
            +++   +       +   WTK  RG        +  +GL++  +  +I      +    
Sbjct: 336 FIILFSPI----LAAL---WTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWF--- 385

Query: 440 AKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMT 499
               G+V        +++ ++  +VL    + F+    +      AP ++KS   +    
Sbjct: 386 GGPSGLV--------SVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFL 437

Query: 500 TLGVGNFLSSFL--LSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLV 557
           T+  G  L   +  L+ V+D       +G             +     +  V+  +  L+
Sbjct: 438 TVAAGQTLGGQVAGLTAVTDPAYTAFIEGR-----------VFGTIGVVAIVIGILLLLL 486

Query: 558 VAK 560
             K
Sbjct: 487 SPK 489

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 87.1 bits (216), Expect = 7e-18
 Identities = 61/226 (26%), Positives = 115/226 (50%), Gaps = 26/226 (11%)

Query: 49  YHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFF 108
           Y+G+ + LV+YL + L      + N    +    ++TP+ GA +A+++LG++ T +    
Sbjct: 3   YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62

Query: 109 FYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNI 168
            Y++G  + +L    S   P             A +L +G    AL     GTGG KP  
Sbjct: 63  VYVVGHALASLGAVPSLGHPL----------HDALSL-VGLALIAL-----GTGGIKP-- 104

Query: 169 LTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVG-------WALG 221
             ++A   D+FE ++ + +  FF+++ F+I  G+L    +   ++ DVG       + L 
Sbjct: 105 -CVSAFGGDQFEERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLA 163

Query: 222 YGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKR 267
           +G+P + + +A+ +F  G+  Y+ K P G+  +++ K IV A++KR
Sbjct: 164 FGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 70.7 bits (173), Expect = 8e-13
 Identities = 55/245 (22%), Positives = 104/245 (42%), Gaps = 47/245 (19%)

Query: 33  RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGV 92
           RA  +VV  +++E  +++G+ + L++YLT++L +    +    + +   ++VTPI G  +
Sbjct: 9   RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68

Query: 93  AEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFA 152
           A+  LG     ++      +G +VL                        AS +     + 
Sbjct: 69  ADKVLGNRMAVMLGALLMAIGHVVLG-----------------------ASEIHPSFLYL 105

Query: 153 ALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFF-----GTLLGNT 207
           +L  +  G G  K N+  +  + ++  +P+             FS+ +     G+++   
Sbjct: 106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG---------FSLMYAAGNVGSIIAPI 156

Query: 208 VLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKR 267
              Y Q++  WA+G+GL A+G+   + IFL G    RH       FT    V    +R  
Sbjct: 157 ACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGN---RH-------FTHTRGVNKKVLRAT 206

Query: 268 NVPLP 272
           N  LP
Sbjct: 207 NFLLP 211

Length = 493

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 68.3 bits (167), Expect = 4e-12
 Identities = 41/206 (19%), Positives = 80/206 (38%), Gaps = 29/206 (14%)

Query: 42  EVFERMAYHGISSNLVMYL--TDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGR 99
           E++ER +Y+G+   L +YL     L     ++      +   +++    G    +   G 
Sbjct: 19  ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGT 78

Query: 100 YWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAV 159
             T V+     ++G  +LA+S+                             F  L T+AV
Sbjct: 79  KKTMVLGGIVLMLGHFMLAMSIYP------------------------DLIFYGLGTIAV 114

Query: 160 GTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWA 219
           G+G  K N  ++    ++  +   +    + F     SI  G+ +   +   I ++ G+ 
Sbjct: 115 GSGLFKANPSSMVGKLYERGDMPRRDGGFTLF---YMSINIGSFISPLLAGVIAENYGYH 171

Query: 220 LGYGLPALGLAIAIAIFLAGTPFYRH 245
           +G+ L A+G+ I +  F AG    R 
Sbjct: 172 VGFNLAAVGMVIGLLTFFAGRHMLRD 197

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 27/197 (13%)

Query: 42  EVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYW 101
           E++ER  Y+G+   L ++   +L     ++      +   ++     G  V +  LG   
Sbjct: 23  ELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR 82

Query: 102 TFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGT 161
           T V       +G IVLA+   ++G+                S L+    F AL T+AVG 
Sbjct: 83  TIV-------LGAIVLAIGYFMTGM----------------SLLKPDLIFIALGTIAVGN 119

Query: 162 GGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALG 221
           G  K N  ++ +  +    PK+     +F  ++M SI  G+L+  ++   I D  G+++ 
Sbjct: 120 GLFKANPASLLSKCY---PPKDPRLDGAFTLFYM-SINIGSLISLSLAPVIADKFGYSVT 175

Query: 222 YGLPALGLAIAIAIFLA 238
           Y L   GL IA+ ++ A
Sbjct: 176 YNLCGAGLIIALLVYFA 192

Length = 489

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 21/127 (16%)

Query: 440 AKDHGI-VEKGQQVPLTIFIM---LPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTS 495
               G+ ++  + VP+    +   LPQ+VL    +    V  +EF Y QAP +MKS+  +
Sbjct: 532 PTIDGLQLQIVEDVPVNTVSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQA 591

Query: 496 YSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFF 555
             + T+ +GN     ++  +    +            N+      +  F+ L ++    F
Sbjct: 592 LWLLTVAIGN-----IIVLIIAEFE------------NMAVQWAEFVLFSSLMLVVMAIF 634

Query: 556 LVVAKFY 562
            ++A  Y
Sbjct: 635 SILAYTY 641

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 26/203 (12%), Positives = 60/203 (29%), Gaps = 32/203 (15%)

Query: 35  CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAE 94
              + +      +    +S  L +   D     +           G    + + G  +++
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGY-LSD 59

Query: 95  AYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAAL 154
            + GR    ++    + +G ++LA + SL                               
Sbjct: 60  RF-GRRRVLLLGLLLFALGSLLLAFASSL------------------------WLLLVGR 94

Query: 155 YTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD 214
           + L +G G   P    + A+ F          +      +      G LLG  +   + +
Sbjct: 95  FLLGLGGGALYPAAAALIAEWF------PPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148

Query: 215 DVGWALGYGLPALGLAIAIAIFL 237
            +GW   + + A+   +   + L
Sbjct: 149 SLGWRWLFLILAILGLLLALLLL 171

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	596
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.94
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK12382	392	putative transporter; Provisional	99.94
PRK10054	395	putative transporter; Provisional	99.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
PRK10642	490	proline/glycine betaine transporter; Provisional	99.93
PRK10504	471	putative transporter; Provisional	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
PRK11663	434	regulatory protein UhpC; Provisional	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
TIGR00893	399	2A0114 d-galactonate transporter.	99.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.92
PRK09874	408	drug efflux system protein MdtG; Provisional	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.92
TIGR00891	405	2A0112 putative sialic acid transporter.	99.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
PRK09705	393	cynX putative cyanate transporter; Provisional	99.92
PLN00028	476	nitrate transmembrane transporter; Provisional	99.92
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.92
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.92
PRK12307	426	putative sialic acid transporter; Provisional	99.91
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.91
PRK03893	496	putative sialic acid transporter; Provisional	99.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.91
TIGR00898	505	2A0119 cation transport protein.	99.91
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.91
PRK10091	382	MFS transport protein AraJ; Provisional	99.91
PRK03633	381	putative MFS family transporter protein; Provision	99.91
PRK09952	438	shikimate transporter; Provisional	99.91
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.91
PRK03699	394	putative transporter; Provisional	99.91
TIGR00895	398	2A0115 benzoate transport.	99.91
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.9
PRK15011	393	sugar efflux transporter B; Provisional	99.89
PRK15075	434	citrate-proton symporter; Provisional	99.89
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.89
PRK09528	420	lacY galactoside permease; Reviewed	99.89
KOG0569	485	consensus Permease of the major facilitator superf	99.89
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.89
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.89
PRK11043	401	putative transporter; Provisional	99.89
KOG0254	513	consensus Predicted transporter (major facilitator	99.89
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.89
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.88
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.88
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.88
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.88
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
PRK10133	438	L-fucose transporter; Provisional	99.87
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.87
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.86
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.86
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.85
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.85
PRK11010	491	ampG muropeptide transporter; Validated	99.85
KOG2532	466	consensus Permease of the major facilitator superf	99.85
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.84
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.82
TIGR00901	356	2A0125 AmpG-related permease.	99.81
PRK11902	402	ampG muropeptide transporter; Reviewed	99.8
PRK09669	444	putative symporter YagG; Provisional	99.79
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.79
PRK10429	473	melibiose:sodium symporter; Provisional	99.78
PRK09848	448	glucuronide transporter; Provisional	99.78
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.78
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.77
PTZ00207	591	hypothetical protein; Provisional	99.77
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.77
KOG2615	451	consensus Permease of the major facilitator superf	99.76
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.75
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.75
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.74
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.74
TIGR00805	633	oat sodium-independent organic anion transporter.	99.73
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.73
PRK11462	460	putative transporter; Provisional	99.73
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.73
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.73
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.72
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.71
PF13347	428	MFS_2: MFS/sugar transport protein	99.7
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.7
KOG2533	495	consensus Permease of the major facilitator superf	99.68
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.68
COG2211	467	MelB Na+/melibiose symporter and related transport	99.66
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.57
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.49
PRK10642	490	proline/glycine betaine transporter; Provisional	99.48
PRK15011	393	sugar efflux transporter B; Provisional	99.47
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.46
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.44
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.43
PRK09952	438	shikimate transporter; Provisional	99.39
PRK03699	394	putative transporter; Provisional	99.39
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.39
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.39
PRK05122	399	major facilitator superfamily transporter; Provisi	99.38
KOG2563	480	consensus Permease of the major facilitator superf	99.38
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.38
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.38
PRK09705	393	cynX putative cyanate transporter; Provisional	99.37
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.37
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.36
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.35
PRK03545	390	putative arabinose transporter; Provisional	99.33
TIGR00893	399	2A0114 d-galactonate transporter.	99.32
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.31
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.31
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.31
PRK09528	420	lacY galactoside permease; Reviewed	99.3
PRK09874	408	drug efflux system protein MdtG; Provisional	99.29
PRK11663	434	regulatory protein UhpC; Provisional	99.29
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.28
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.28
PRK03633	381	putative MFS family transporter protein; Provision	99.28
PRK10489	417	enterobactin exporter EntS; Provisional	99.27
PRK12382	392	putative transporter; Provisional	99.26
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.26
TIGR00891	405	2A0112 putative sialic acid transporter.	99.25
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.25
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.25
PRK03893	496	putative sialic acid transporter; Provisional	99.24
PRK11010	491	ampG muropeptide transporter; Validated	99.21
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.2
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.2
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.2
PRK15075	434	citrate-proton symporter; Provisional	99.19
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.18
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.17
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.15
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.15
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.15
TIGR00900	365	2A0121 H+ Antiporter protein.	99.14
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.14
KOG3626	735	consensus Organic anion transporter [Secondary met	99.14
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.13
PLN00028	476	nitrate transmembrane transporter; Provisional	99.12
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.11
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.11
PRK10091	382	MFS transport protein AraJ; Provisional	99.11
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.1
PRK10504	471	putative transporter; Provisional	99.1
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.1
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.09
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.09
TIGR00895	398	2A0115 benzoate transport.	99.08
PRK12307	426	putative sialic acid transporter; Provisional	99.08
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.07
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.06
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.06
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.06
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.02
PRK10054	395	putative transporter; Provisional	99.01
PRK10133	438	L-fucose transporter; Provisional	99.01
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.0
PRK11902	402	ampG muropeptide transporter; Reviewed	98.99
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.99
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.97
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.97
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.95
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.91
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.9
PF13347	428	MFS_2: MFS/sugar transport protein	98.9
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.89
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.88
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.87
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.87
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.85
PRK09848	448	glucuronide transporter; Provisional	98.85
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.84
KOG2532	466	consensus Permease of the major facilitator superf	98.84
TIGR00901	356	2A0125 AmpG-related permease.	98.82
TIGR00898	505	2A0119 cation transport protein.	98.8
PRK11043	401	putative transporter; Provisional	98.77
KOG0569	485	consensus Permease of the major facilitator superf	98.76
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.73
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.73
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.72
PRK10429	473	melibiose:sodium symporter; Provisional	98.72
KOG3762	618	consensus Predicted transporter [General function	98.68
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.66
PRK09669	444	putative symporter YagG; Provisional	98.65
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.64
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.63
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.61
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.61
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.58
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.55
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.49
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.49
COG2211	467	MelB Na+/melibiose symporter and related transport	98.44
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.35
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.34
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.31
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.3
PRK11462	460	putative transporter; Provisional	98.27
COG0477	338	ProP Permeases of the major facilitator superfamil	98.26
KOG0637	498	consensus Sucrose transporter and related proteins	98.26
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.25
KOG2533	495	consensus Permease of the major facilitator superf	98.13
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.1
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.09
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.08
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.04
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.01
KOG3762	618	consensus Predicted transporter [General function	98.0
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.99
PF12832	77	MFS_1_like: MFS_1 like family	97.98
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.95
PTZ00207	591	hypothetical protein; Provisional	97.92
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.9
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.88
TIGR00805	633	oat sodium-independent organic anion transporter.	97.81
KOG2615	451	consensus Permease of the major facilitator superf	97.78
KOG0254	513	consensus Predicted transporter (major facilitator	97.76
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.74
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.67
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.62
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.52
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.36
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.34
KOG2563	480	consensus Permease of the major facilitator superf	97.24
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.98
PRK03612	521	spermidine synthase; Provisional	96.91
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.77
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.75
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.68
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.63
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.86
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.78
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.7
KOG3626	735	consensus Organic anion transporter [Secondary met	95.63
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.97
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	94.74
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.6
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	94.41
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.03
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.98
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.82
KOG3880	409	consensus Predicted small molecule transporter inv	92.35
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.84
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	91.51
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.92
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.92
KOG0637	498	consensus Sucrose transporter and related proteins	88.81
KOG3810	433	consensus Micronutrient transporters (folate trans	87.24
KOG3097	390	consensus Predicted membrane protein [Function unk	85.68
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	85.66
COG0477	338	ProP Permeases of the major facilitator superfamil	84.98
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	84.61
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	84.35
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	83.06
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	82.85
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	80.68
COG3202	509	ATP/ADP translocase [Energy production and convers	80.4

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-47  Score=415.23  Aligned_cols=529  Identities=47%  Similarity=0.796  Sum_probs=476.2

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHH
Q 007604           28 KRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAF  107 (596)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~  107 (596)
                      +++.|+++..++..+.++++++|++..++..|+++.+|.+...+...++.+.......++++++++|.++||.+++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCC-CCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhh
Q 007604          108 FFYLMGMIVLALSVSLSGLKPPPC-NDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAH  186 (596)
Q Consensus       108 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  186 (596)
                      ++..+|..++.++..++.+.+..| .+.++..|..++..+...++.++.++++|.|+..|+..++.+||+++..++++.+
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            999999999999888888888776 4444556888888899999999999999999999999999999999877777778


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHh
Q 007604          187 KLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRK  266 (596)
Q Consensus       187 r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (596)
                      +.+.|+|+++..+.|..++..+..|+.+..||.+.|.++.+..++++++++...+.+++++|.++|...+.+++..+.++
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCC-------CCCcccccchhhhhhhhHHhHHHHHHH
Q 007604          267 RNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGA-------TNPWILCSVSQVEETTQMLAMIPILVA  339 (596)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~l~~~~~~~~  339 (596)
                      ++...+.++...      ..........+.++.++++|+++.+...       .++|+.++.+++++.|.+++.++++..
T Consensus       272 ~~~~~~~~~~~~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~  345 (571)
T KOG1237|consen  272 RKAVVSLDPEEL------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLT  345 (571)
T ss_pred             HhccCCCcchhc------cccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHH
Confidence            888776654333      1111112233346778899998877432       367999999999999999999999999


Q ss_pred             hhhhhhhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHH
Q 007604          340 TFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGL  419 (596)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~  419 (596)
                      ...+++++.|+.+.+..|...|++++++.+.+|++.+..+..+..++..|+.+++..|+.||..+++.+++++.++++|+
T Consensus       346 ~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~  425 (571)
T KOG1237|consen  346 TIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGL  425 (571)
T ss_pred             HHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccc
Confidence            99999999999999999999999999966999999999999999999999999999999999988776789999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHH
Q 007604          420 VIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMT  499 (596)
Q Consensus       420 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  499 (596)
                      ++..+++...+..+.+|.+...+    +.+..++++++|++++++++|++|.+..++..|+.++++|++||+.+++++.+
T Consensus       426 ~~si~sm~~aa~vE~krl~~~~~----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~  501 (571)
T KOG1237|consen  426 VLSILSMAVAGIVEAKRLKTAVS----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLL  501 (571)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhh----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHH
Confidence            99999999999999988776543    22234689999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhHHHhhhhccccccCCCCccc-cCCcccchhHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 007604          500 TLGVGNFLSSFLLSTVSDITKRHGHKGWIL-NNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEV  568 (596)
Q Consensus       500 ~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~  568 (596)
                      +.++|+.++.++++.+...++.  +.+|++ +++|.+++..+||+++.+..+....+.++.++|+.+..+
T Consensus       502 t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  502 TVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK  569 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence            9999999999999998765533  568999 999999999999999999999999999999988776654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=6.6e-41  Score=345.75  Aligned_cols=461  Identities=19%  Similarity=0.311  Sum_probs=354.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----CChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHH
Q 007604           29 RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLH----HGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFV  104 (596)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg----~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~  104 (596)
                      -+++|.++.++.++++|+++|||+...+..|+..+++    +|++++.-+.++|....++.++++||++||++|+|+++.
T Consensus        17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            3478999999999999999999999999999999888    999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhh
Q 007604          105 IAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEK  184 (596)
Q Consensus       105 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  184 (596)
                      .+.++.++|.++++.++.                      .....++++..++++|.|++.|+..++++|++|++++   
T Consensus        97 lGail~~iGh~~L~~~~~----------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp---  151 (498)
T COG3104          97 LGAILMAIGHLVLAISSV----------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP---  151 (498)
T ss_pred             HHHHHHHHHHHHHhcccc----------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc---
Confidence            999999999999987630                      1566799999999999999999999999999999986   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCC--CCChhH--H----H
Q 007604          185 AHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKP--AGSPFT--R----M  256 (596)
Q Consensus       185 ~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~----~  256 (596)
                       ||..+++++|++.|+|+.++|++.+++.+.+||+..|.++++...++++.++++++....+..  +..|..  .    .
T Consensus       152 -rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~  230 (498)
T COG3104         152 -RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVL  230 (498)
T ss_pred             -ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhH
Confidence             699999999999999999999999999999999999999999999999999998877665432  222211  0    0


Q ss_pred             HHHHHHHHHhcCCCCCCCchhhhhhhhH-HhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHH
Q 007604          257 AKVIVAAIRKRNVPLPIDPQELYELDLE-YYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIP  335 (596)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~  335 (596)
                      ...+.......       .-+....+.- .......  +.     ..+..-...       ....+.. +++|+++..+.
T Consensus       231 ~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~--i~-----~~~~~~~~~-------~~~~~~~-~er~r~~~~~~  288 (498)
T COG3104         231 GGLVVMILAAL-------LTLLLNQNTFSGVLLVIS--IL-----IAIIYFAEA-------FRSPKVF-DERRRLLAAIP  288 (498)
T ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHH-------hccCccH-HHHHHHHHHHH
Confidence            11110000000       0000000000 0000000  00     000000000       0002233 67899999999


Q ss_pred             HHHHhhhhhhhhhcccceeeeeec-cccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHH
Q 007604          336 ILVATFVPSTMLAQINTLFVKQGT-TLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQR  414 (596)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~  414 (596)
                      +++..++||++++|+++.+..+.. ..+++.. +++.+++.++++|++.+++++|+.++++.|++++. +.   +++..+
T Consensus       289 Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~K  363 (498)
T COG3104         289 LFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIK  363 (498)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchH
Confidence            999999999999999987765544 3455533 48899999999999999999999999999988885 23   588889


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHH
Q 007604          415 MGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGT  494 (596)
Q Consensus       415 l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~  494 (596)
                      +.+|+.+++.+++++........+           .....|.+|+++.++++++||.+..|...++++..+|+.+.+.++
T Consensus       364 FalGl~l~g~~fl~l~~~~~~~~~-----------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~m  432 (498)
T COG3104         364 FALGLILAGLGFLILLLAGIWFGG-----------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIM  432 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC-----------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHH
Confidence            999999999999888766432211           022579999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 007604          495 SYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYV  563 (596)
Q Consensus       495 g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  563 (596)
                      |.|.+++..|+.++..+.+.... +     ++    ..+......+|+..+...++.........++.+
T Consensus       433 a~wfLt~a~~~~l~g~va~~~~~-~-----~~----~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~  491 (498)
T COG3104         433 AMWFLTVAAGQTLGGQVAGLTAV-T-----DP----AYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLN  491 (498)
T ss_pred             HHHHHHHHHHHHhhceecccccc-c-----ch----hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999998874221 0     00    011223356788888877777766666655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3e-36  Score=327.14  Aligned_cols=462  Identities=14%  Similarity=0.225  Sum_probs=331.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHH
Q 007604           29 RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFF  108 (596)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  108 (596)
                      +++||.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+....++.++++|+++||++||||+++++.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999994499999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhh
Q 007604          109 FYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL  188 (596)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  188 (596)
                      ++.++.++++++.+                       ....++++|.++++|.|+..|+..++++|++|++++    ||.
T Consensus        90 ~~~~g~~~~~~~~~-----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~  142 (489)
T PRK10207         90 VLAIGYFMTGMSLL-----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLD  142 (489)
T ss_pred             HHHHHHHHHHHhcc-----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhh
Confidence            99999999987641                       233466889999999999999999999999998752    468


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceecc--CCCCChhHHHHHHHHH----
Q 007604          189 SFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHK--KPAGSPFTRMAKVIVA----  262 (596)
Q Consensus       189 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----  262 (596)
                      +++++++++.|+|.++||.+++++.+..|||+.|+++++..+++++.+...++.+++.  ++++++. |..+.+..    
T Consensus       143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~~  221 (489)
T PRK10207        143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLGS  221 (489)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHHH
Confidence            8999999999999999999999999999999999998776666666666655444332  2222222 11111100    


Q ss_pred             ---HHH-hcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHH
Q 007604          263 ---AIR-KRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILV  338 (596)
Q Consensus       263 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~  338 (596)
                         ... ...................  .          ....++.            +..+.++++ +++.+..+.+++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~--i----------~~~~f~~------------~~~~~~~~~-r~r~~~~~~l~~  276 (489)
T PRK10207        222 VVMIFVCAWLMHNVEVANLVLIVLSI--V----------VTIIFFR------------EAFKLDKTG-RNKMFVAFVLML  276 (489)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHH--H----------HHHHHHH------------HHhcCCHHH-HHHHHHHHHHHH
Confidence               000 0000000000000000000  0          0000000            000111222 344455566667


Q ss_pred             Hhhhhhhhhhcccceeeeeec-cccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHH
Q 007604          339 ATFVPSTMLAQINTLFVKQGT-TLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGI  417 (596)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~  417 (596)
                      ....+|..+.|....+..+.+ .+++... ++.++++.+.+++++.+++..|+.+++.+|+++|...    +++..++.+
T Consensus       277 ~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~----~~~~~k~~~  351 (489)
T PRK10207        277 EAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKD----LSMPMKFTL  351 (489)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCC----CCcHHHHHH
Confidence            788899999988765544433 3444443 5677888889999999999999999999999887422    578889999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHH
Q 007604          418 GLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYS  497 (596)
Q Consensus       418 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~  497 (596)
                      |+++.+++++.++.......+   .        ....+++|+++.+++.|+||.+..|..++++.+.+|++++|.++|++
T Consensus       352 G~~l~~~~~~~~~~~~~~~~~---~--------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~  420 (489)
T PRK10207        352 GMFLCSLGFLTAAAAGMWFAD---A--------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMW  420 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhhcC---C--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHH
Confidence            999999898765432210000   0        01357788999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007604          498 MTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYK  565 (596)
Q Consensus       498 ~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~  565 (596)
                      ++.+++|+.+|..+...+....  ...++.    ...+.+.++|..+++.+++..++++++.++.++.
T Consensus       421 ~l~~~ig~~lg~~l~~~~~~~~--~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        421 FLTQAAAFLLGGYVATFTAVPD--NITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc--ccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887653100  001111    0112356788888888887777777776665544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=3.4e-35  Score=318.65  Aligned_cols=453  Identities=15%  Similarity=0.202  Sum_probs=329.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHH
Q 007604           29 RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDK--LHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIA  106 (596)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~  106 (596)
                      .+++|.++.+++.++++++++|++.++++.|++++  +|++..+++++.+.+.++..++++++|+++||++|||+++.++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            34668899999999999999999999999999987  9999999999999999999999999999999944999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhh
Q 007604          107 FFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAH  186 (596)
Q Consensus       107 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  186 (596)
                      .++.+++.++++++.                        +...+++++++.|+|.|+..|+..++++|++|++++   .+
T Consensus        86 ~~~~~~g~~~~~~~~------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~  138 (475)
T TIGR00924        86 GIVLMLGHFMLAMSI------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PR  138 (475)
T ss_pred             HHHHHHHHHHHHhcc------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---cc
Confidence            999999998887653                        556778899999999999999999999999997642   14


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhH----HH-HHH--
Q 007604          187 KLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFT----RM-AKV--  259 (596)
Q Consensus       187 r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~--  259 (596)
                      |++++++++++.|+|.++||.+++++.+..||++.|+++++..+++++.++..++.+++.++++++.+    +. .+.  
T Consensus       139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (475)
T TIGR00924       139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA  218 (475)
T ss_pred             ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence            88899999999999999999999999998899999999887776676666665555433322221111    00 000  


Q ss_pred             ----HHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHH
Q 007604          260 ----IVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIP  335 (596)
Q Consensus       260 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~  335 (596)
                          +....+....... ...........    ..         ..+....... .  ++    ..++ .++++....+.
T Consensus       219 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~---------~~~~~~~~~~-~--~~----~~~~-~~~~~~~~~l~  276 (475)
T TIGR00924       219 LLAALALVFFCAWLMHH-VVIANILLMTV----TL---------AVIIFFFRLA-F--KP----RLDA-VARNKMYAYIV  276 (475)
T ss_pred             HHHHHHHHHHHHHHHhc-cHHHHHHHHHH----HH---------HHHHHHHHHH-H--hc----cCCH-HHHhHHHHHHH
Confidence                0000000000000 00000000000    00         0000000000 0  00    0111 22344455677


Q ss_pred             HHHHhhhhhhhhhcccceee-eeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHH
Q 007604          336 ILVATFVPSTMLAQINTLFV-KQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQR  414 (596)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~  414 (596)
                      +++...++|+.+.|..+.+. .+...++.+++ ++.++++.+.++|++.+++.+|+.+++..++.||...    ++...+
T Consensus       277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~----~~~~~k  351 (475)
T TIGR00924       277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKD----PTTPLK  351 (475)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCC----CCcHHH
Confidence            77888899999999887543 33334566655 5788899999999999999999999888777776211    466678


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHH
Q 007604          415 MGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGT  494 (596)
Q Consensus       415 l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~  494 (596)
                      +.+|+++.+++++.+++...    ..++        ..+.+++|+++.+++.++||.+..|..++++.+.+|+++||+++
T Consensus       352 ~~~G~~l~~~~~~~~~~~~~----~~~~--------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~  419 (475)
T TIGR00924       352 FTLGMLFCGASFLTFAASIW----FADA--------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQML  419 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----hcCC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999988776421    1111        11468999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 007604          495 SYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYV  563 (596)
Q Consensus       495 g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  563 (596)
                      |++.+...+|+.+++.+.+....                ..+...+|...++..++..+++++..++.+
T Consensus       420 g~~~l~~~~g~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (475)
T TIGR00924       420 GMWFLAQAMGSLLGGYLATFGAV----------------PQGVTGVFGKIGLVTLLVGVVMALMVPWLN  472 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998876642                112345677777777777777766665543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=7.7e-35  Score=311.82  Aligned_cols=427  Identities=16%  Similarity=0.279  Sum_probs=310.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      |++.++.++++++++++++|++..+++.|+++++|+++.+++.+.+.+.....++++++|+++||++||||+++++.++.
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++.++++...+                       +...++++..+..+|.|...++..++++|++|++++    +|.++
T Consensus        87 ~lg~lll~~~~~-----------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sg  139 (493)
T PRK15462         87 AIGHVVLGASEI-----------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGG  139 (493)
T ss_pred             HHHHHHHHHhhc-----------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccce
Confidence            998876654320                       223355566667788889899999999999998642    49999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccC-CCCChhH--HHHHHHHHHHHhc
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKK-PAGSPFT--RMAKVIVAAIRKR  267 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~  267 (596)
                      ++++|...|+|+.++|.+.+++.+..||++.|.++++..+++++.++..++.+.+.. .+++|.+  +...........-
T Consensus       140 f~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (493)
T PRK15462        140 FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVL  219 (493)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHH
Confidence            999999999999999999999999899999999988877777777666555543321 1111111  1100000000000


Q ss_pred             CCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhh
Q 007604          268 NVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTML  347 (596)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~  347 (596)
                      -.   ..+......-..... .        ............+-  ..... ...+.+++|++...+.++++...||+.+
T Consensus       220 ~~---~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~--~~~~~-~~~~~~er~r~~~~~~l~~~~~~Fw~~~  284 (493)
T PRK15462        220 LV---ATPALITVLFWKEWS-V--------YALIVATIIGLGVL--AKIYR-KAENQKQRKELGLIVTLTFFSMLFWAFA  284 (493)
T ss_pred             HH---HHHHHHHHHHHHHHH-H--------HHHHHHHHHHHHHH--HHHHH-hcCCHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            00   000000000000000 0        00000000000000  00000 0112356778888888899999999999


Q ss_pred             hcccceeeee-eccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHH
Q 007604          348 AQINTLFVKQ-GTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIM  426 (596)
Q Consensus       348 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~  426 (596)
                      .|.++.+... ..++|+++. ++++|+..++++|++.+++++|+..+++.++.||..    .++...++.+|++++++++
T Consensus       285 ~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~----~~s~~~Kfa~g~~~~g~~f  359 (493)
T PRK15462        285 QQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNR----TVRIWGKFALGLGLMSAGF  359 (493)
T ss_pred             HHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCC----CCCcHHHHHHHHHHHHHHH
Confidence            9999754322 346778877 788999999999999999999999999988865421    1578889999999999999


Q ss_pred             HHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHH-hHHH
Q 007604          427 VIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTL-GVGN  505 (596)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~-~ig~  505 (596)
                      +++.+.....    ++++        ..+.+|++..++++++||.+..|...+++.+.+|++.||++||++.+.. .+|+
T Consensus       360 ~~l~~~~~~~----~~~~--------~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~  427 (493)
T PRK15462        360 CILTLSARWS----AMYG--------HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIAN  427 (493)
T ss_pred             HHHHHHHhhc----CCCC--------CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            8887643211    1111        3688999999999999999999999999999999999999999998854 7999


Q ss_pred             HHHhHHHhhhh
Q 007604          506 FLSSFLLSTVS  516 (596)
Q Consensus       506 ~lg~~~~~~i~  516 (596)
                      .++..+.....
T Consensus       428 ~~~g~~~~~~~  438 (493)
T PRK15462        428 YLAGVIADQTS  438 (493)
T ss_pred             HHHHHHHHHhc
Confidence            98888877663

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=4.2e-34  Score=311.85  Aligned_cols=457  Identities=13%  Similarity=0.231  Sum_probs=326.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH
Q 007604           30 GGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF  109 (596)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  109 (596)
                      +++|.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+.......++++|+++||++|||++++++.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999998888787888889999999944999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      ..++.++++++.+                       +...++++++++|+|.|...|+..++++|++|++++    +|..
T Consensus        98 ~~ig~~l~~~~~~-----------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~  150 (500)
T PRK09584         98 LAIGYALVAWSGH-----------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDG  150 (500)
T ss_pred             HHHHHHHHHHhcc-----------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhh
Confidence            9999888877531                       345567889999999999999999999999987641    4667


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceecc--CCCCChhHHH------HHHH-
Q 007604          190 FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHK--KPAGSPFTRM------AKVI-  260 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~-  260 (596)
                      ++++++++.++|..+||.+++++.+..|||+.|++.++..+++++.++..++..+++  ++++++.+..      .... 
T Consensus       151 ~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (500)
T PRK09584        151 AFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVA  230 (500)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHH
Confidence            889999999999999999999999999999999998876666665555444333322  2222222110      0000 


Q ss_pred             HHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHh
Q 007604          261 VAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVAT  340 (596)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~  340 (596)
                      ...........++..........               .....+....         ....++ .++++.+..+.+++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~  285 (500)
T PRK09584        231 LIAIATWLLHNQEIARMALGVVA---------------LGIVVIFGKE---------AFAMKG-AARRKMIVAFILMLEA  285 (500)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHH---------------HHHHHHHHHH---------HhhcCH-HHHHHHHHHHHHHHHH
Confidence            00000000000000000000000               0000000000         001112 2345555566677888


Q ss_pred             hhhhhhhhcccceeeeeec-cccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHH
Q 007604          341 FVPSTMLAQINTLFVKQGT-TLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGL  419 (596)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~  419 (596)
                      ++||+.+.|.+..+..+.. .++.++. ++.++++.+.+++++.+++.+|+.+++..|+.+|       .++.+++.+|+
T Consensus       286 i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~  357 (500)
T PRK09584        286 IIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGM  357 (500)
T ss_pred             HHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHH
Confidence            8999999999988766543 2444444 4677899999999999999999999988777766       46778999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHH
Q 007604          420 VIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMT  499 (596)
Q Consensus       420 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  499 (596)
                      ++++++++.+......    .+++        ...+.+|+++.+++.++||++..|...+++.+.+|+++||+++|++.+
T Consensus       358 ~l~~l~f~~l~~~~~~----~~~~--------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l  425 (500)
T PRK09584        358 VLCSGAFLVLPLGAKF----ANDA--------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFL  425 (500)
T ss_pred             HHHHHHHHHHHHHHHh----cCCC--------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            9999999887765421    1111        146788999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhHHHhhhhccccccCCCCccccCC-cccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007604          500 TLGVGNFLSSFLLSTVSDITKRHGHKGWILNNL-NVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYK  565 (596)
Q Consensus       500 ~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~-~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~  565 (596)
                      ...+|+.++..+...+..       .+-..+.. ..+++..+|..+++++++..++++...++.++.
T Consensus       426 ~~a~g~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        426 TTAGAALIAGYVANLMAV-------PDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHHHHHHHHHHhcc-------ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888864421       00000111 112356788888887777766666666655543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.97  E-value=1.8e-27  Score=263.36  Aligned_cols=334  Identities=24%  Similarity=0.441  Sum_probs=270.2

Q ss_pred             HHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 007604           47 MAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGL  126 (596)
Q Consensus        47 ~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~  126 (596)
                      ++|||+...+..|+.+.+|++.+++..+...+.....+.++++|+++|+++||++++.++.++..+|..+++++.. +..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999988887531 110


Q ss_pred             CCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhh
Q 007604          127 KPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGN  206 (596)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~  206 (596)
                                     ....+....+++..++++|.|+..|+..++.+|+++++++   ++|.++++++|+++|+|+.+++
T Consensus        80 ---------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~  141 (654)
T TIGR00926        80 ---------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLIST  141 (654)
T ss_pred             ---------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHH
Confidence                           0012345577889999999999999999999999986532   3589999999999999999999


Q ss_pred             hhhhhcccc-------ccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 007604          207 TVLVYIQDD-------VGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELY  279 (596)
Q Consensus       207 ~~~~~l~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (596)
                      ++.+++.+.       .+|..+|.+++++++++++++...+++++++++.+++..+..++++.+.++++...+..     
T Consensus       142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-----  216 (654)
T TIGR00926       142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-----  216 (654)
T ss_pred             HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-----
Confidence            999988743       36999999999999999988888888877777777777777777766666543211100     


Q ss_pred             hhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeec
Q 007604          280 ELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGT  359 (596)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (596)
                                        ...+++|.+..+.         ..++++++|++++++.++....++|..+.|..+.+..|..
T Consensus       217 ------------------~~~~~ld~a~~~~---------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~  269 (654)
T TIGR00926       217 ------------------WPLHWLDYAKDKH---------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQAT  269 (654)
T ss_pred             ------------------cchhHHHHhcccc---------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence                              0123444433321         2345788899999999999999999999999998888887


Q ss_pred             cccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhh
Q 007604          360 TLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERY  435 (596)
Q Consensus       360 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~  435 (596)
                      .++.+++ ++.++++.+..++++.++++.|+.+..+.+..+|+...   +++..++.+|+++.+++++++++.+.+
T Consensus       270 ~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~  341 (654)
T TIGR00926       270 RMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLK  341 (654)
T ss_pred             HhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766 57889999999999999999999997777776665322   678999999999999999888776654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.95  E-value=9.1e-25  Score=244.79  Aligned_cols=156  Identities=14%  Similarity=0.104  Sum_probs=132.4

Q ss_pred             HHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 007604           53 SSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCN  132 (596)
Q Consensus        53 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  132 (596)
                      ...+..++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++..++.++++++.           
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~-----------  253 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ-----------  253 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            44555667788999999999999999999999999999999998 999999999999999888888764           


Q ss_pred             CCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhc
Q 007604          133 DINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYI  212 (596)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l  212 (596)
                                   +...++++|++.|+|.|+..|...+++.|.+|++.      |+..+++......+|.++++.++..+
T Consensus       254 -------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       254 -------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         67788999999999999999999999999999885      99999999999999999998766544


Q ss_pred             cc-------------cccchhhhHHHHHHHHHHHHHHHhc
Q 007604          213 QD-------------DVGWALGYGLPALGLAIAIAIFLAG  239 (596)
Q Consensus       213 ~~-------------~~g~~~~f~~~~~~~~~~~~~~~~~  239 (596)
                      ..             ..+||+.+++.++..++.++..++.
T Consensus       315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l  354 (742)
T TIGR01299       315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM  354 (742)
T ss_pred             HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence            32             2368998888777666555544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.94  E-value=2.8e-24  Score=228.62  Aligned_cols=374  Identities=11%  Similarity=0.059  Sum_probs=250.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      +|.+..+.+..+...++.......++.|+++++|.++.+.+++.+++.++..+++++.|+++||+ ||||+++.+.++..
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA   92 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence            35677788888888888888888999999999999999999999999999999999999999998 99999999999888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++.+.+.++.....+                ...+...+++.|+++|++.+...+....++.|.+|+++      |+++.
T Consensus        93 ~~~~~~~~~~~~~~~----------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~  150 (399)
T PRK05122         93 LSGLLYLLAGLLAAW----------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVI  150 (399)
T ss_pred             HHHHHHHHhhhhhcc----------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccch
Confidence            877766554211100                00145678899999999999999999999999999886      99999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCC
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPL  271 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (596)
                      ++.....++|..+|+.+++++.+..||+..+++.++..++..+..   ++. +..++++++..+..              
T Consensus       151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~--------------  212 (399)
T PRK05122        151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RPR-PAVPPVKGERLPFR--------------  212 (399)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hcC-CCCCCCCccchhHH--------------
Confidence            999999999999999999999888999998877665443332221   111 11100000000000              


Q ss_pred             CCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHh-HHHHHHHhhhhhhhhhcc
Q 007604          272 PIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLA-MIPILVATFVPSTMLAQI  350 (596)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~-~~~~~~~~~~~~~~~~~~  350 (596)
                                                                           +..|.... .....+....+.......
T Consensus       213 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (399)
T PRK05122        213 -----------------------------------------------------RVLGRVWPYGMGLALASIGFGTIATFI  239 (399)
T ss_pred             -----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                 00000000 000111111111111111


Q ss_pred             cceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 007604          351 NTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIAS  430 (596)
Q Consensus       351 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~  430 (596)
                      +.++..+  +.+         ..+.......++.+++.++.+++.||.++|           +.+..+.++.+++++...
T Consensus       240 ~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~  297 (399)
T PRK05122        240 TLYYAAR--GWD---------GAALALTLFGVAFVGARLLFGNLINRLGGL-----------RVAIVSLLVEILGLLLLW  297 (399)
T ss_pred             HHHHHHc--ccc---------cchHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHH
Confidence            1111111  000         111222334455556666666666555444           345566666666665554


Q ss_pred             HHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhH
Q 007604          431 FTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSF  510 (596)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~  510 (596)
                      ..                     .+.+.+++..++.|++.+...+.......+..|++.||+++|+++....+|..+++.
T Consensus       298 ~~---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~  356 (399)
T PRK05122        298 LA---------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP  356 (399)
T ss_pred             Hh---------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            42                     234455566788899998888888888889999999999999999999999999999


Q ss_pred             HHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 007604          511 LLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVV  558 (596)
Q Consensus       511 ~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~  558 (596)
                      +.+.+.+..                ++...|++.+++.+++.++.+..
T Consensus       357 ~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        357 LAGLVASWF----------------GYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHHHHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHh
Confidence            888876421                34667777777766665555444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.94  E-value=2.3e-24  Score=229.71  Aligned_cols=357  Identities=12%  Similarity=0.116  Sum_probs=234.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      +|......++..++..+..+......| .+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~   90 (406)
T PRK11551         13 LALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALF   90 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            344455555666666666655544444 55678999999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++.+++.++.                        +...+++.|++.|++.+...+...+++.|.+|+++      |+++
T Consensus        91 ~~~~~~~~~~~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~  140 (406)
T PRK11551         91 GLFSLATAQAW------------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTA  140 (406)
T ss_pred             HHHHHHHHHhc------------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            88887777653                        67788899999999999999999999999999876      9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCC
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVP  270 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (596)
                      .++.+...++|..+++.+++.+.+..+|++.|++.++..++..+......++.++.+++++.                  
T Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------  202 (406)
T PRK11551        141 VSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA------------------  202 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc------------------
Confidence            99999999999999999988888888999999887765444433333222221110000000                  


Q ss_pred             CCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcc
Q 007604          271 LPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQI  350 (596)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~  350 (596)
                       ..+.....                        + ..            . ++.+.++........++....++....+.
T Consensus       203 -~~~~~~~~------------------------~-~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (406)
T PRK11551        203 -GKQRAPVL------------------------R-AL------------F-GEGRATATLLLWISYFFTLIVLYFLLNWL  243 (406)
T ss_pred             -chhhhhhH------------------------H-HH------------h-hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00000000                        0 00            0 00000111111111111112222222222


Q ss_pred             cceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 007604          351 NTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIAS  430 (596)
Q Consensus       351 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~  430 (596)
                      +.+...+  +.+       ....+.......+..+++..+..++.||+++|           +.+.++++..+++++...
T Consensus       244 p~~~~~~--g~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~  303 (406)
T PRK11551        244 PSLLVGQ--GLS-------RSQAGLVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAALA  303 (406)
T ss_pred             HHHHHhC--CCC-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHH
Confidence            2221111  111       11223344555666777777888877777665           223344444444444333


Q ss_pred             HHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhH
Q 007604          431 FTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSF  510 (596)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~  510 (596)
                      ..                     .+.+.+....++.+++.....+..+++..|.+|++.||+++|+.+....+|..+|+.
T Consensus       304 ~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~  362 (406)
T PRK11551        304 AA---------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPL  362 (406)
T ss_pred             hc---------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhh
Confidence            22                     133444555677787777778888899999999999999999999999999999999


Q ss_pred             HHhhhhc
Q 007604          511 LLSTVSD  517 (596)
Q Consensus       511 ~~~~i~~  517 (596)
                      +.+.+.+
T Consensus       363 ~~g~l~~  369 (406)
T PRK11551        363 LAGQLLA  369 (406)
T ss_pred             hHhhhhc
Confidence            9998865

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=2.5e-24  Score=228.45  Aligned_cols=374  Identities=11%  Similarity=0.082  Sum_probs=245.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      +|...+.+.+..+......+.....+| .+.+++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence            344455556655554444443333344 56779999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++.+.+.+++                        +.+.++++|+++|++.+...+...+++.|++|+++      |+++
T Consensus        85 ~~~~~~~~~~~------------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~  134 (390)
T PRK03545         85 IASHVLSALAW------------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQA  134 (390)
T ss_pred             HHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhH
Confidence            99998888774                        78889999999999999888999999999999876      9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCC
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVP  270 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (596)
                      .++.....++|..++|.+++.+.+..|||++|++.++..++..+..+...|+.++++  +++.++.    .         
T Consensus       135 ~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~----~---------  199 (390)
T PRK03545        135 LSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH--SGSLKSL----P---------  199 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cchHHHH----H---------
Confidence            999999999999999999999988899999999888765544433333222211100  0000000    0         


Q ss_pred             CCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhH-HHHHHHhhhhhhhhhc
Q 007604          271 LPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAM-IPILVATFVPSTMLAQ  349 (596)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~-~~~~~~~~~~~~~~~~  349 (596)
                                                                          +..+.+.+... ...++.....+.....
T Consensus       200 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (390)
T PRK03545        200 ----------------------------------------------------LLFRRPALVSLYLLTVVVVTAHFTAYSY  227 (390)
T ss_pred             ----------------------------------------------------HHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                00001111111 1111111222222222


Q ss_pred             ccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 007604          350 INTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIA  429 (596)
Q Consensus       350 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~  429 (596)
                      .+.+...+ .+.+.       ...+.......+..+++..+.+++.||..+|            .+..+..+.+++....
T Consensus       228 ~~~~l~~~-~g~s~-------~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------------~~~~~~~~~~~~~~~l  287 (390)
T PRK03545        228 IEPFVQQV-AGLSE-------NFATLLLLLFGGAGIIGSVLFSRLGNRHPSG------------FLLIAIALLLVCLLLL  287 (390)
T ss_pred             HHHHHHHh-cCCCc-------cHHHHHHHHHHHHHHHHHHHHHHHhhccchh------------HHHHHHHHHHHHHHHH
Confidence            22222111 11111       1112233344455566666666655443322            2444444444444333


Q ss_pred             HHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHh
Q 007604          430 SFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSS  509 (596)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~  509 (596)
                      ...                    ..+.+.+++..++.|++.+...+.....+.+..| +.|++++|+++....+|..+|+
T Consensus       288 ~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~  346 (390)
T PRK03545        288 LPA--------------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGA  346 (390)
T ss_pred             HHH--------------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence            221                    1244555667788888887777877888888877 5889999999999999999999


Q ss_pred             HHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 007604          510 FLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAK  560 (596)
Q Consensus       510 ~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~  560 (596)
                      .+.+.+.+..                ++...|++.+++.+++.++++...+
T Consensus       347 ~~~G~~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        347 LLGNQVSLHL----------------GLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHhcc----------------ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999987532                3456777777777777777666543

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=5.5e-24  Score=225.90  Aligned_cols=374  Identities=11%  Similarity=0.042  Sum_probs=245.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +.++.+.+..++..++.....+.+|.|+.+++|.|..+.+++.+.+.++..+++++.|+++||+ ||||+++++.+...+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~   93 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGL   93 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHH
Confidence            4566666777777777777778888899999999999999999999999999999999999998 999999999887776


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.+........+..                ...+...++++|+++|++.+...+...+++.|.+|+++      |+++++
T Consensus        94 ~~~~~~~~~~~~~~----------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~  151 (392)
T PRK12382         94 AGLAYLLAAILPVS----------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMS  151 (392)
T ss_pred             HHHHHHhhhccccc----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhh
Confidence            65443322111100                01267788999999999999988988999999999876      999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCC
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLP  272 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (596)
                      +.+.+.++|..+||.+++++.+..||+..+.+..+..++...   ..+ +.++.+++++...+..+.             
T Consensus       152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~-------------  214 (392)
T PRK12382        152 WNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAGERPSLWSV-------------  214 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcccCchHHHH-------------
Confidence            999999999999999999998888999877655443222221   111 111111100000000000             


Q ss_pred             CCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccc
Q 007604          273 IDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINT  352 (596)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~  352 (596)
                                                 .                     +..  .+....   ..+....+.......+.
T Consensus       215 ---------------------------~---------------------~~~--~~~~~~---~~l~~~~~~~~~~~~~~  241 (392)
T PRK12382        215 ---------------------------V---------------------GLI--WKPGLG---LALQGVGFAVIGTFVSL  241 (392)
T ss_pred             ---------------------------H---------------------HHH--HHhHHH---HHHHHHHHhHHHHHHHH
Confidence                                       0                     000  000000   01111111111111111


Q ss_pred             eeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007604          353 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFT  432 (596)
Q Consensus       353 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~  432 (596)
                      ++..      ....     ..+.......+..+++.++.+++.||+++|+           .+..+..+.+++++.....
T Consensus       242 ~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----------~~~~~~~~~~~~~~~~~~~  299 (392)
T PRK12382        242 YFAS------KGWA-----MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVK-----------VAIVSLLVETVGLLLLWLA  299 (392)
T ss_pred             HHHh------cCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-----------ehHHHHHHHHHHHHHHHHc
Confidence            1111      0100     1112223344555666777777776666552           2555666666665554432


Q ss_pred             hhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHH
Q 007604          433 ERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLL  512 (596)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~  512 (596)
                                           .+.+...+..++.+++.+...+.......+.+|++.||++.|+++....+|..+++.+.
T Consensus       300 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~  358 (392)
T PRK12382        300 ---------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLA  358 (392)
T ss_pred             ---------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 13344555678888888888888888889999999999999999999999999999999


Q ss_pred             hhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 007604          513 STVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVV  558 (596)
Q Consensus       513 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~  558 (596)
                      +.+.+..                ++...|.+.+++.+++.++.+..
T Consensus       359 g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        359 GMLATSF----------------GYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHh----------------CchHHHHHHHHHHHHHHHHHHhh
Confidence            9887522                34567777777777666655443

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=2.4e-24  Score=228.91  Aligned_cols=354  Identities=12%  Similarity=0.056  Sum_probs=234.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      .+|+.+.+.+..++..++++.+.++++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence            346788888889999999999999999999999999999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++.++..+++                        +...+++.+.+.+.+.+...+...++..|.+|+++      |+++
T Consensus        84 ~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  133 (395)
T PRK10054         84 ASGFIAIPLVN------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKI  133 (395)
T ss_pred             HHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHH
Confidence            88888777764                        56667777888888877778889999999999875      9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCC
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVP  270 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (596)
                      +++.+...++|.++||.+++++.+ .+|+.+|++.++..+++++......++.+.+++++++ + ..             
T Consensus       134 ~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~-~-~~-------------  197 (395)
T PRK10054        134 FSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATETG-S-VW-------------  197 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccchh-h-hh-------------
Confidence            999999999999999999998875 7899999988776666544333322221111000000 0 00             


Q ss_pred             CCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhH-HHHHHHhhhhhhhhhc
Q 007604          271 LPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAM-IPILVATFVPSTMLAQ  349 (596)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~-~~~~~~~~~~~~~~~~  349 (596)
                                                       +.                .+..+.|.+... +..++....+......
T Consensus       198 ---------------------------------~~----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  228 (395)
T PRK10054        198 ---------------------------------SP----------------SVLLQDKALLWFTCSGFLASFVSGAFASC  228 (395)
T ss_pred             ---------------------------------hh----------------hhhccCceehHHHHHHHHHHHHHHHhhhh
Confidence                                             00                000011111111 1111111111111111


Q ss_pred             ccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 007604          350 INTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIA  429 (596)
Q Consensus       350 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~  429 (596)
                      ...+.... .  +....   ....+.+...+.+..+...+..+++    .+|+       ++.+.+..++++.+++....
T Consensus       229 ~~~~~~~~-~--~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~~----~~~~-------~~~~~l~~~~~~~~~~~~~~  291 (395)
T PRK10054        229 ISQYVMVV-A--DSDFA---EKVVAVVLPVNAAMVVSLQYSVGRR----LNAA-------NIRPLMTAGTLCFVIGLVGF  291 (395)
T ss_pred             HHHHHHHh-c--ccchH---HHHHHHHHHhhhhheeeehhHHHHH----HccC-------CchhHHHHHHHHHHHHHHHH
Confidence            11111110 0  11100   0011122222333333333333343    3331       22344666776666666555


Q ss_pred             HHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHh
Q 007604          430 SFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSS  509 (596)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~  509 (596)
                      ....                    .+.+.+.+..++.++|++...|..++++.+.+|++.||++.+..+ ...+|..+|+
T Consensus       292 ~~~~--------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp  350 (395)
T PRK10054        292 IFSG--------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINP  350 (395)
T ss_pred             HHcc--------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHH
Confidence            4321                    133444556789999999999999999999999999999998766 5668999999


Q ss_pred             HHHhhhhcc
Q 007604          510 FLLSTVSDI  518 (596)
Q Consensus       510 ~~~~~i~~~  518 (596)
                      .+.+.+.+.
T Consensus       351 ~~~G~l~~~  359 (395)
T PRK10054        351 LVSGVILTT  359 (395)
T ss_pred             HHHHHHHHH
Confidence            999999763

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=1.8e-23  Score=222.50  Aligned_cols=345  Identities=13%  Similarity=0.140  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMI  115 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  115 (596)
                      +.++...++...+.+.+.++++.|+++++|++..+.|.+.+.+.+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            5667888888999999999999999999999999999999999999999999999999998 999999999999999998


Q ss_pred             HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 007604          116 VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWM  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  195 (596)
                      ++..+.                        +.+.+++.|++.|++.+...|...+++.|.+|+++      |+++.++.+
T Consensus        92 ~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~  141 (400)
T PRK11646         92 TMAIAH------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLM  141 (400)
T ss_pred             HHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHH
Confidence            887653                        67778899999999999888999999999999875      999999999


Q ss_pred             HHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCc
Q 007604          196 FSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDP  275 (596)
Q Consensus       196 ~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (596)
                      ...++|..+||.+++++. .+||++.|++.++..++..+......++.+. ++..++..   +..               
T Consensus       142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~---~~~---------------  201 (400)
T PRK11646        142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVR---EGM---------------  201 (400)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhH---HHH---------------
Confidence            999999999999999998 6899999998876554443333222222110 00000000   000               


Q ss_pred             hhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcc---cc
Q 007604          276 QELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQI---NT  352 (596)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~---~~  352 (596)
                                                                    ....+.+.+.......   ..++....+.   .+
T Consensus       202 ----------------------------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p  232 (400)
T PRK11646        202 ----------------------------------------------TRVLRDKRFVTYVLTL---TGYYMLAVQVMLMLP  232 (400)
T ss_pred             ----------------------------------------------HHHHcCchHHHHHHHH---HHHHHHHHHHHHhhh
Confidence                                                          0000011111111111   1111111111   11


Q ss_pred             eeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007604          353 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFT  432 (596)
Q Consensus       353 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~  432 (596)
                      .+...... +       ....+.......+..+.......+    +.+|+      .+..+.+..+.++.+++++.++..
T Consensus       233 ~~~~~~~~-~-------~~~~g~l~~~~~~~~~~~~~~~~~----~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~  294 (400)
T PRK11646        233 IMVNDIAG-S-------PSAVKWMYAIEACLSLTLLYPIAR----WSEKR------FRLEHRLMAGLLIMSLSMFPIGMV  294 (400)
T ss_pred             hhHHhhcC-C-------chHHHHHHHHHHHHHHHHHHHHHH----HHHHh------cchhHHHHHHHHHHHHHHHHHHHh
Confidence            11111000 0       111112222222222222222222    23221      122345667777777776655543


Q ss_pred             hhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHH
Q 007604          433 ERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLL  512 (596)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~  512 (596)
                      +                     +.+.++...++.+.+.+...|...+++.+.+|++.||+++|++++...+|..+|+.+.
T Consensus       295 ~---------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~  353 (400)
T PRK11646        295 S---------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGG  353 (400)
T ss_pred             h---------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccch
Confidence            1                     2334444556778888888899999999999999999999999999999999999999


Q ss_pred             hhhhccc
Q 007604          513 STVSDIT  519 (596)
Q Consensus       513 ~~i~~~~  519 (596)
                      +.+.+.+
T Consensus       354 G~l~~~~  360 (400)
T PRK11646        354 GWLFDLG  360 (400)
T ss_pred             HHHHHHH
Confidence            9998654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=2.3e-23  Score=213.88  Aligned_cols=378  Identities=12%  Similarity=0.065  Sum_probs=267.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH
Q 007604           30 GGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF  109 (596)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  109 (596)
                      ..+..++.+.+..|+...+=|...+.+|. +.+++|.+..++|+.++.|.++..++.|+...++||+ .||++++..+.+
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~l   87 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLAL   87 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHH
Confidence            34567788888888888888877777765 6779999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      +.++.+++++++                        ++..++++|++.|+..|.+.+...++.++..|+++      |++
T Consensus        88 Fi~~n~l~alAp------------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~  137 (394)
T COG2814          88 FIVSNLLSALAP------------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGR  137 (394)
T ss_pred             HHHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhh
Confidence            999999999995                        89999999999999999999999999999999996      999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCC-ceeccCCCCChhHHHHHHHHHHHHhcC
Q 007604          190 FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTP-FYRHKKPAGSPFTRMAKVIVAAIRKRN  268 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (596)
                      +.++...+..++..+|..++.++.+.+|||..|+..+...++.++..+...| +...+ +.+.+..+..+.         
T Consensus       138 Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~-~~~~~~~~~~~~---------  207 (394)
T COG2814         138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISG-SLPGPLRTLLRL---------  207 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCC-CCCcchhHHHHH---------
Confidence            9999999999999999999999999999999999888877777776666555 11111 111111111000         


Q ss_pred             CCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhh
Q 007604          269 VPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLA  348 (596)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~  348 (596)
                                                                             .++.+.........+.....+..|.
T Consensus       208 -------------------------------------------------------l~~p~v~~~l~~t~l~~~g~F~~ft  232 (394)
T COG2814         208 -------------------------------------------------------LRRPGVLLGLLATFLFMTGHFALYT  232 (394)
T ss_pred             -------------------------------------------------------hcCchHHHHHHHHHHHHcchhhhHH
Confidence                                                                   0111222223333344444445554


Q ss_pred             cccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 007604          349 QINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVI  428 (596)
Q Consensus       349 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~  428 (596)
                      ++.++..+.. +++       ............++.+++..+.+++.|| ..           .+.+...+.+.++.++.
T Consensus       233 Yi~P~L~~v~-g~s-------~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~-----------~~~l~~~~~l~a~~~l~  292 (394)
T COG2814         233 YIRPFLESVA-GFS-------VSAVSLVLLAFGIAGFIGNLLGGRLADR-GP-----------RRALIAALLLLALALLA  292 (394)
T ss_pred             hHHHHHHHcc-CCC-------HhHHHHHHHHHHHHHHHHHHHHhhhccc-cc-----------hhHHHHHHHHHHHHHHH
Confidence            4444332211 111       1122334445566666777777665554 22           23355566677777666


Q ss_pred             HHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHH
Q 007604          429 ASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLS  508 (596)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg  508 (596)
                      +.+.                    ..+.+..+...++.+++.....+..+....+.+ ++.++.+++++....++|..+|
T Consensus       293 l~~~--------------------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~G  351 (394)
T COG2814         293 LTFT--------------------GASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALG  351 (394)
T ss_pred             HHHh--------------------cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHH
Confidence            5554                    224444445555555555444444444444422 5889999999999999999999


Q ss_pred             hHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007604          509 SFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKF  561 (596)
Q Consensus       509 ~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  561 (596)
                      ..+.+.+.+.                .++....+..+.+.+++.++.+...++
T Consensus       352 A~lGG~v~~~----------------~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         352 AALGGLVLDA----------------LGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHh----------------hchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999762                345667777777777776666555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=1.1e-23  Score=230.42  Aligned_cols=398  Identities=10%  Similarity=0.029  Sum_probs=246.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      |..+..+++..++..+..-.+..-+| .+.+++|.+..+.+|+.+.+.++..++.++.|+++||+ |||++++++..++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            34455566666666555554555555 45678999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++.++++.+.                        +.+.++++|+++|+|.++..|.....+.+.+++++     +|++++
T Consensus        83 ~~~~~~~~a~------------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~  133 (495)
T PRK14995         83 LASLAAAFSP------------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMAL  133 (495)
T ss_pred             HHHHHHHHcC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHH
Confidence            9999998874                        78889999999999999988888888888775433     499999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHH------HHHHHHH
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAK------VIVAAIR  265 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  265 (596)
                      +++....++|..+||.+++++.+..|||+.|++.....++.+++.+...|+.++++.++........      .+.....
T Consensus       134 g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~  213 (495)
T PRK14995        134 GVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAK  213 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988766555544444433332221111111111100      0001111


Q ss_pred             hcCCCCCCCchh-hhh--hhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHH-hh
Q 007604          266 KRNVPLPIDPQE-LYE--LDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVA-TF  341 (596)
Q Consensus       266 ~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~-~~  341 (596)
                      ... ....+... ...  ..-.--.           .+...+..     ...+..   +.+.-+.|.+.......+. ..
T Consensus       214 ~~~-~~~~~~~~~~~~~~~~~~~l~-----------~f~~~e~~-----~~~p~~---~~~lf~~~~~~~~~~~~~~~~~  273 (495)
T PRK14995        214 TAL-KGFLSLWVTSLTLLTGALLLG-----------LFIRTQLA-----ASRPMI---DMRLFTHRIILSGVVMAMTAMI  273 (495)
T ss_pred             hcc-ccCCchHHHHHHHHHHHHHHH-----------HHHHHHhc-----CCCCCc---CHHHhCCcccHHHHHHHHHHHH
Confidence            100 00000000 000  0000000           00000000     000000   0000111222111111111 11


Q ss_pred             hhhhhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHH
Q 007604          342 VPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVI  421 (596)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l  421 (596)
                      .++.. ....+.+.......+       ....+.......+...++.++.+++.+|+++|           +.+..|+++
T Consensus       274 ~~~~~-~~~~~~~lq~v~g~s-------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~g~~~  334 (495)
T PRK14995        274 TLVGF-ELLMAQELQFVHGLS-------PLEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----------LVATGGMAL  334 (495)
T ss_pred             HHHHH-HHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHH
Confidence            11111 111111111101111       12234444555667777788888877766655           335667777


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHH
Q 007604          422 HIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTL  501 (596)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~  501 (596)
                      .+++++.......                  ..+.+......++.|+|.++..+.....+.+.+|++.+|.+++++++.+
T Consensus       335 ~~~~~~~l~~~~~------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  396 (495)
T PRK14995        335 SALSFYGLAMTDF------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAY  396 (495)
T ss_pred             HHHHHHHHHHhcC------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHH
Confidence            7766655443211                  1233445566788899999999999999999999999999999999999


Q ss_pred             hHHHHHHhHHHhhhhc
Q 007604          502 GVGNFLSSFLLSTVSD  517 (596)
Q Consensus       502 ~ig~~lg~~~~~~i~~  517 (596)
                      .+|+.+|+.+.+.+..
T Consensus       397 ~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        397 ELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999865

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.93  E-value=4.4e-23  Score=225.46  Aligned_cols=175  Identities=15%  Similarity=0.146  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhh-hhh-----HHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVK-SAN-----NVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIA  106 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~-~~~-----~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~  106 (596)
                      +......+..+++.+.+. +..+...++.++++.+..+ ..+     +.++..++..+++++.|+++||+ |||+++.++
T Consensus        16 ~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~   93 (490)
T PRK10642         16 KAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAIT   93 (490)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence            445556667777776655 4556666888888644322 122     24667788999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhh
Q 007604          107 FFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAH  186 (596)
Q Consensus       107 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  186 (596)
                      ++++.++.++++++++...+                +......+.+.|+++|+|.|+..+...++++|++|+++      
T Consensus        94 ~~l~~i~~~~~a~~~~~~~~----------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------  151 (490)
T PRK10642         94 IVIMSISTFCIGLIPSYATI----------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------  151 (490)
T ss_pred             HHHHHHHHHHHHhcccHHHH----------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------
Confidence            99999999999987521100                00011247889999999999999999999999999986      


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhcc--------ccccchhhhHHHHHHHHH
Q 007604          187 KLSFFNWWMFSIFFGTLLGNTVLVYIQ--------DDVGWALGYGLPALGLAI  231 (596)
Q Consensus       187 r~~~~~~~~~~~~ig~~l~~~~~~~l~--------~~~g~~~~f~~~~~~~~~  231 (596)
                      |+.+.++...+..+|..+|+.+...+.        ..+|||++|++.++..++
T Consensus       152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            999999988888888887775543332        257999999987654443

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=3.4e-23  Score=225.33  Aligned_cols=404  Identities=12%  Similarity=0.051  Sum_probs=245.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      .|..+.+.+..++..+..+.+...+|.+.+ ++|.++.+.+++.+.+.++..++.+++|+++||+ |||++++.+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            346777888888888888888888888775 6999999999999999999999999999999998 99999999988888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++.+++.++.                        +...++++|+++|++.+...|...+++.|.+|+++      |+++.
T Consensus        87 ~~~~~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  136 (471)
T PRK10504         87 LGSLFCALSG------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAM  136 (471)
T ss_pred             HHHHHHHHhC------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence            8888776653                        67778899999999999999999999999999775      99999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHH---HHHHHHH-hc
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAK---VIVAAIR-KR  267 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~  267 (596)
                      ++.+...++|..+||.+++++.+..|||+.|++......+..+......++.+..+.+.+.......   ....... +.
T Consensus       137 ~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  216 (471)
T PRK10504        137 TFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDG  216 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999989999999988766555554444433332221111111110000   0000000 00


Q ss_pred             CCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhh
Q 007604          268 NVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTML  347 (596)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~  347 (596)
                      .....-.+......-..-..            .......+++... .+.  ... ++.+.|.+...+...+.....+...
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~~--~~~-~l~~~~~~~~~l~~~~~~~~~~~~~  280 (471)
T PRK10504        217 SKGLGLSPLAIAGLVAVGVV------------ALLLYLLHARNNN-RAL--FSL-KLFRTRTFSLGLAGSFAGRIGSGML  280 (471)
T ss_pred             CCcCCcchHHHHHHHHHHHH------------HHHHHHHHHhcCC-CCc--cCH-HHhcccchHHHHHHHHHHHHHHHHH
Confidence            00000000000000000000            0000000000000 000  000 0111122222221111111111111


Q ss_pred             hcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 007604          348 AQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMV  427 (596)
Q Consensus       348 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~  427 (596)
                      ....+++.....+.+       ....+.......+..++..++..++.||+++|           +.+..+.++.+++..
T Consensus       281 ~~~~~~~~~~~~g~~-------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~  342 (471)
T PRK10504        281 PFMTPVFLQIGLGFS-------PFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR-----------RVLVATTLGLALVSL  342 (471)
T ss_pred             HHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHH
Confidence            111222221111111       11122223333444455556666666555544           445566666665554


Q ss_pred             HHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHH
Q 007604          428 IASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFL  507 (596)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l  507 (596)
                      ...+...                  ..+.+.+....++.|++.++..+....+..+.+|++.+|+++|++++.+.+|..+
T Consensus       343 ~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i  404 (471)
T PRK10504        343 LFMLVAL------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSI  404 (471)
T ss_pred             HHHhccc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHH
Confidence            4443210                  1123333445677788888888888999999999999999999999999999999


Q ss_pred             HhHHHhhhhccc
Q 007604          508 SSFLLSTVSDIT  519 (596)
Q Consensus       508 g~~~~~~i~~~~  519 (596)
                      |+.+.+.+.+..
T Consensus       405 g~~i~g~ll~~~  416 (471)
T PRK10504        405 GVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=1e-23  Score=229.76  Aligned_cols=399  Identities=12%  Similarity=0.081  Sum_probs=228.7

Q ss_pred             cCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccc
Q 007604           64 LHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKAS  143 (596)
Q Consensus        64 lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (596)
                      +|.+..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++..+..            +...++
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~------------~~~~~~  116 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFT------------SIGPDN  116 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccc------------cccccc
Confidence            388999999999999999999999999999998 9999999999999888887775421000            000011


Q ss_pred             cchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcc--------cc
Q 007604          144 TLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQ--------DD  215 (596)
Q Consensus       144 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~--------~~  215 (596)
                      ......++++|+++|++.|+..|...++++|++|+++      |+++.++.+.+..+|.++++.+++.+.        +.
T Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  190 (479)
T PRK10077        117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT  190 (479)
T ss_pred             hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence            1246678899999999999999999999999999986      999999999999999999886655432        35


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCccccc
Q 007604          216 VGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIG  295 (596)
Q Consensus       216 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (596)
                      .|||++|++.++..++..+..++.+ +.++....+++.++..+...   +..+   .....+..  ++.           
T Consensus       191 ~gWr~~f~~~~~~~~~~~~~~~~l~-~s~~~l~~~~~~~~~~~~~~---~~~~---~~~~~~~~--~~~-----------  250 (479)
T PRK10077        191 DGWRYMFASEAIPALLFLMLLYFVP-ETPRYLMSRGKQEQAEGILR---KIMG---NTLATQAL--QEI-----------  250 (479)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHcCCHHHHHHHHH---HHcC---ChhHHHHH--HHH-----------
Confidence            7899999988766555544433332 21111000111111111000   0000   00000000  000           


Q ss_pred             CCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccc-----eeeeeeccccccCCCccc
Q 007604          296 STQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINT-----LFVKQGTTLDRAIGSSFK  370 (596)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~  370 (596)
                          ...+..                 +.+..+..+......+........+.+...     ++...   .....+  ..
T Consensus       251 ----~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---i~~~~g--~~  304 (479)
T PRK10077        251 ----KHSLDH-----------------GRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPE---IFKTLG--AS  304 (479)
T ss_pred             ----HHHHHH-----------------hhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHH---HHHHcC--CC
Confidence                000000                 000000100000000000000011111111     00000   000011  01


Q ss_pred             -ccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccC
Q 007604          371 -IPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKG  449 (596)
Q Consensus       371 -~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (596)
                       ...........+..+++.++..++.||++||           +.+..+.++.+++++.+......              
T Consensus       305 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r-----------~~~i~~~~~~~v~~~~l~~~~~~--------------  359 (479)
T PRK10077        305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT--------------  359 (479)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----------HHHHHhHHHHHHHHHHHHHHHhc--------------
Confidence             0112223334555666777777877777766           34666777777776665433210              


Q ss_pred             CcceehhHHHHHHHHHHHHHHHH-HhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCcc
Q 007604          450 QQVPLTIFIMLPQFVLMGTADAF-LEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWI  528 (596)
Q Consensus       450 ~~~~~~~~~li~~~~l~g~~~~~-~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~  528 (596)
                         .....+.+...++.+.+.+. ..|..+.++.|.+|++.|++++|+.+..+.+++.+++.+.+.+.+       .+|+
T Consensus       360 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~-------~~~~  429 (479)
T PRK10077        360 ---QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK-------NSWL  429 (479)
T ss_pred             ---CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-------ccch
Confidence               11222333344455555544 346778999999999999999999999999999999988886642       1232


Q ss_pred             ccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007604          529 LNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYK  565 (596)
Q Consensus       529 ~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~  565 (596)
                      .++.   +....|++++++.++..++.+++.++.+++
T Consensus       430 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  463 (479)
T PRK10077        430 VAHF---HNGFSYWIYGCMGVLAALFMWKFVPETKGK  463 (479)
T ss_pred             hhhc---cCccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            2221   223456776776666666555555554433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.93  E-value=8.8e-24  Score=228.68  Aligned_cols=371  Identities=10%  Similarity=0.020  Sum_probs=224.6

Q ss_pred             HHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCc
Q 007604           58 MYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQ  137 (596)
Q Consensus        58 ~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  137 (596)
                      ..+.+++|.+.++.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++.++++++.                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            345679999999999999999999999999999999998 999999999999998888887764                


Q ss_pred             cccccccchhHHHHH-HHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccc
Q 007604          138 DCRKASTLQLGTFFA-ALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDV  216 (596)
Q Consensus       138 ~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~  216 (596)
                              +...+++ .|++.|++.+...+...+++.++++ ++      |+++.++.+.+..+|..++|.+++++.+.+
T Consensus       106 --------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~  170 (455)
T TIGR00892       106 --------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESF  170 (455)
T ss_pred             --------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence                    5555554 4688899998876777788889886 33      999999999999999999999999999889


Q ss_pred             cchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccC
Q 007604          217 GWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGS  296 (596)
Q Consensus       217 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (596)
                      |||++|++.++..+++.+..++.++....++..+....            ..  .+....     .     ++.......
T Consensus       171 gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------~~--~~~~~~-----~-----~~~~~~~~~  226 (455)
T TIGR00892       171 GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK------------EG--LPPDGS-----T-----KKLSKKSTA  226 (455)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc------------cc--CCCCCc-----c-----ccccccchh
Confidence            99999999887665554443333322111000000000            00  000000     0     000000000


Q ss_pred             CcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHH-HHHHhhhhhhhhhcccceeeeeeccccccCCCcccccccc
Q 007604          297 TQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIP-ILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPAS  375 (596)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  375 (596)
                      .+..++.+.                 +..+.+.+...+. ..+....++......+.+...      ....   ....+.
T Consensus       227 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------~g~s---~~~~g~  280 (455)
T TIGR00892       227 EKINRFLDF-----------------SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD------KGVD---EYEAAF  280 (455)
T ss_pred             hhhhhhcch-----------------HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH------cCCC---HHHHHH
Confidence            000000000                 0011122221111 111111111111111222111      1111   112233


Q ss_pred             cccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceeh
Q 007604          376 LTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT  455 (596)
Q Consensus       376 ~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (596)
                      ......+..+++.++..++.|+...+       ......+..+.++.+++++.....                     .+
T Consensus       281 ~~~~~~~~~~~~~~~~g~l~d~~~~~-------~~~~~~~~~~~~~~~l~~ll~~~~---------------------~~  332 (455)
T TIGR00892       281 LLSIIGFVDIFARPSCGLIAGLKWIR-------PHVQYLFSFALLFNGLTHLLCALA---------------------GD  332 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccC-------HHHHHHHHHHHHHHHHHHHHHHHh---------------------ch
Confidence            44455666666677777755431111       011122233333333333333221                     24


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCccc
Q 007604          456 IFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVC  535 (596)
Q Consensus       456 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~  535 (596)
                      .+.++...++.|++.+...+...+++.+.+|++.+|+.+|+++....+|..+|+.+.+.+.+..               +
T Consensus       333 ~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~---------------g  397 (455)
T TIGR00892       333 YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT---------------K  397 (455)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc---------------C
Confidence            5556667788899998889999999999999999999999999999999999999998876522               2


Q ss_pred             chhHHHHHHHHHHHHHHH
Q 007604          536 HLDYYYAFFAILNVLNFV  553 (596)
Q Consensus       536 ~~~~~f~~~~~~~~v~~~  553 (596)
                      ++...|++.+++.+++.+
T Consensus       398 ~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       398 NYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             CcchHHHHhhHHHHHHHH
Confidence            344567766666555544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=2.8e-23  Score=222.34  Aligned_cols=388  Identities=13%  Similarity=0.065  Sum_probs=241.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 007604           37 FVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIV  116 (596)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~  116 (596)
                      .++...++..++.......+|.+.+ +++.++.+.|++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~   98 (417)
T PRK10489         21 AVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIG   98 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHH
Confidence            3444455555555555556666654 6788999999999999999999999999999998 9999999988887777666


Q ss_pred             HHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHH
Q 007604          117 LALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMF  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  196 (596)
                      ++......                   ..+...+++.|++.|++.+...++..+++.|.+|+++      |+++.++.+.
T Consensus        99 ~~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  153 (417)
T PRK10489         99 LALNAFLP-------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITML  153 (417)
T ss_pred             HHHHHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHH
Confidence            54321100                   0156677889999999988888888999999999875      9999999999


Q ss_pred             HHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCch
Q 007604          197 SIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQ  276 (596)
Q Consensus       197 ~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (596)
                      ..++|..+||.+++++.+..+|++.|++.++..+++.+..+..++..+.+++++++..+..+..                
T Consensus       154 ~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------------  217 (417)
T PRK10489        154 TVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLLAGF----------------  217 (417)
T ss_pred             HHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHHHHH----------------
Confidence            9999999999999999888899999988776655555443333221110000000000000000                


Q ss_pred             hhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeee
Q 007604          277 ELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVK  356 (596)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  356 (596)
                                                                   +.+.+.+.+.......+............+.+ ..
T Consensus       218 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~  251 (417)
T PRK10489        218 ---------------------------------------------RFLLASPVVGGIALLGGLLTMASAVRVLYPAL-AD  251 (417)
T ss_pred             ---------------------------------------------HHHHcChHHHHHHHHHHHHHHHHhHHHhhHHH-HH
Confidence                                                         00000111111111111111111111111111 11


Q ss_pred             eeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhh
Q 007604          357 QGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYR  436 (596)
Q Consensus       357 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~  436 (596)
                      +..+.+       ....+.+.....++.+++..+.+++    .+|.       ++.+.+..+.++.+++++.....    
T Consensus       252 ~~~g~~-------~~~~g~~~~~~~~g~~ig~~~~~~l----~~~~-------~~~~~l~~~~~~~~~~~~~~~~~----  309 (417)
T PRK10489        252 EVWQMG-------AAQIGLLYAAVPLGAALGALTSGWL----AHSA-------RPGLLMLLSTLGSFLAVGLFGLM----  309 (417)
T ss_pred             hccCCC-------hhHhHHHHHHHHHHHHHHHHHHHHh----hhcc-------CcchHHHHHHHHHHHHHHHHHcc----
Confidence            101111       1112233344455555555555553    3331       12234566666666666555432    


Q ss_pred             hhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 007604          437 LSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS  516 (596)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~  516 (596)
                                       .+++......++.|++.+...+...+++.+.+|++.||+++|+++....+|..+|+.+.+.+.
T Consensus       310 -----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~  372 (417)
T PRK10489        310 -----------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG  372 (417)
T ss_pred             -----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence                             244455566777888888888888899999999999999999999999999999999999987


Q ss_pred             ccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 007604          517 DITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEV  568 (596)
Q Consensus       517 ~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~  568 (596)
                      +..                +....++..++..++..++.+...+++++++++
T Consensus       373 ~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (417)
T PRK10489        373 AMM----------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQT  408 (417)
T ss_pred             HHh----------------chhhHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            532                223455555655555555555555555554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=4e-23  Score=220.77  Aligned_cols=172  Identities=13%  Similarity=0.083  Sum_probs=145.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      +|+..+.+++..++..+....+. +....+++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++..++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~-~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIG-FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHH-HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence            45555656665555556555444 444588999999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++.++++++.                        +...+++.|++.|++.+...|....++.|++|+++      |+++
T Consensus        84 ~~~~~~~~~~~------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~  133 (412)
T TIGR02332        84 GIASTATMFAT------------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARA  133 (412)
T ss_pred             HHHHHHHHHhc------------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHH
Confidence            99999988874                        67789999999999999999999999999999875      9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccc------cccchhhhHHHHHHHHHHHH
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQD------DVGWALGYGLPALGLAIAIA  234 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~  234 (596)
                      .++++....+|..+++.+++++.+      ..|||+.|++.++..++..+
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~  183 (412)
T TIGR02332       134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGV  183 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHH
Confidence            999999999999999999888753      36999999987765544333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.93  E-value=4.2e-23  Score=222.19  Aligned_cols=164  Identities=14%  Similarity=0.053  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      .+..++..++..+..+.....++.+. +++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~  102 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIIN  102 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHH
Confidence            33444445555555555556666554 57999999999999999999999999999999998 99999999999999999


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      ++++.+.                        +...+++.|++.|++.|...+...+++.|++|+++      |+++.+++
T Consensus       103 ~~~~~~~------------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~  152 (434)
T PRK11663        103 ILFGFSS------------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIW  152 (434)
T ss_pred             HHHHHHh------------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHH
Confidence            8888764                        67788888999999999989999999999999876      99999999


Q ss_pred             HHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHH
Q 007604          195 MFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLA  230 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~  230 (596)
                      +.+.++|..++|.+.+++.+.+|||+.|++.++..+
T Consensus       153 ~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~  188 (434)
T PRK11663        153 NTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAI  188 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            999999999999999999888999999988776544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=5.1e-23  Score=216.12  Aligned_cols=351  Identities=12%  Similarity=0.082  Sum_probs=215.9

Q ss_pred             HHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 007604           54 SNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCND  133 (596)
Q Consensus        54 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  133 (596)
                      ......+++++|++.++.+++.+.+.+++.+++++.|+++||+ |||+++..++.....+.+ .....            
T Consensus        11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~------------   76 (368)
T TIGR00903        11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP------------   76 (368)
T ss_pred             HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh------------
Confidence            4444456779999999999999999999999999999999998 999987765555544433 22221            


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 007604          134 INSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQ  213 (596)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~  213 (596)
                                 .+...+++.|+++|+|.+. .+......+|++|+++      |+++.++.+.+..+|..+++.+++++.
T Consensus        77 -----------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~  138 (368)
T TIGR00903        77 -----------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIY  138 (368)
T ss_pred             -----------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       1678899999999999986 4555566799999875      999999999999999999999999999


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCccc
Q 007604          214 DDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYR  293 (596)
Q Consensus       214 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (596)
                      +.+|||+.|++.++..++..++.+...|+.++.+++.....+..+                                   
T Consensus       139 ~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~-----------------------------------  183 (368)
T TIGR00903       139 TAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVK-----------------------------------  183 (368)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHH-----------------------------------
Confidence            889999999886655444433333322221111100000000000                                   


Q ss_pred             ccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCcccccc
Q 007604          294 IGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPP  373 (596)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  373 (596)
                             .+   .               +-.++++.....+..++....++....+.++++...  ..+        ...
T Consensus       184 -------~~---~---------------~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~--g~s--------~~~  228 (368)
T TIGR00903       184 -------EF---G---------------ALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPA--GLE--------DIA  228 (368)
T ss_pred             -------HH---H---------------HHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCC--------hHH
Confidence                   00   0               000111222222333444555555555555554221  111        111


Q ss_pred             cccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcce
Q 007604          374 ASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP  453 (596)
Q Consensus       374 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (596)
                      +   ....+..+.+.....++.|++.||..       +...+....++.++.+......                     
T Consensus       229 ~---~~~~l~~~~g~~g~~~~~d~~~r~~~-------r~~~~~~~~~~~a~~~~~~~~~---------------------  277 (368)
T TIGR00903       229 G---DAVALAILAGLIGVAVIPDRVARAGL-------RSIYIRAAALLIAAFFLALAFE---------------------  277 (368)
T ss_pred             H---HHHHHHHHHHHHHHHHhhHHhhhhhh-------HHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence            1   11222223333334555666655421       1111222233333333333221                     


Q ss_pred             ehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCc
Q 007604          454 LTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLN  533 (596)
Q Consensus       454 ~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~  533 (596)
                      .+....+....+.+++.....+..+++..|.+|++.||+++|+.+...++++..++.+.+.+..                
T Consensus       278 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~----------------  341 (368)
T TIGR00903       278 LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS----------------  341 (368)
T ss_pred             cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc----------------
Confidence            1222233334445555666667788999999999999999999999999999999998887641                


Q ss_pred             ccchhHHHHHHHHHHHHHHHHH
Q 007604          534 VCHLDYYYAFFAILNVLNFVFF  555 (596)
Q Consensus       534 ~~~~~~~f~~~~~~~~v~~~~~  555 (596)
                        +....|.++++..+++.+..
T Consensus       342 --~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       342 --SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             --CHHHHHHHHHHHHHHHHHHH
Confidence              24567887777777766554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.93  E-value=5e-23  Score=216.92  Aligned_cols=382  Identities=13%  Similarity=0.131  Sum_probs=233.0

Q ss_pred             HHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 007604           54 SNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCND  133 (596)
Q Consensus        54 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  133 (596)
                      +....++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++.            
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------   80 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------   80 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence            4444567889999999999999999999999999999999998 999999999999999988888764            


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 007604          134 INSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQ  213 (596)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~  213 (596)
                                  +.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.+++++.
T Consensus        81 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~  142 (399)
T TIGR00893        81 ------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWIL  142 (399)
T ss_pred             ------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence                        77889999999999999999999999999999875      999999999999999999999999988


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCccc
Q 007604          214 DDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYR  293 (596)
Q Consensus       214 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (596)
                      +..+|++.|++.++..++..+..+...++.++++....+..+.  ..    .++ .             +.+..++.   
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~-~-------------~~~~~~~~---  199 (399)
T TIGR00893       143 IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKY--IV----VGG-L-------------LAEQQGKG---  199 (399)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHh--hc----chh-h-------------cccccccc---
Confidence            8899999999877665544444333333221111100000000  00    000 0             00000000   


Q ss_pred             ccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHH-HHHHhhhhhhhhhcccceeeeeeccccccCCCccccc
Q 007604          294 IGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIP-ILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIP  372 (596)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  372 (596)
                       +..+.                +.  ...+..+.+++..... .++............ +.+..+....+       ...
T Consensus       200 -~~~~~----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~  252 (399)
T TIGR00893       200 -PSTPK----------------KY--QIKELLKDRRVWGLALGQFLVNIGLGFFLTWF-PTYLVQERGLS-------ILE  252 (399)
T ss_pred             -ccCCC----------------cc--chHHHhcCHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhccc-------HHH
Confidence             00000                00  0000111122222211 111112111111111 11111111111       112


Q ss_pred             ccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcc
Q 007604          373 PASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV  452 (596)
Q Consensus       373 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (596)
                      .+.......+..+++.++..++.||++||...      ....... ..+..+..........                 .
T Consensus       253 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~-----------------~  308 (399)
T TIGR00893       253 AGFMASLPGIVGFIGMILGGRLSDLLLRRGKS------LVFARKT-AIIAGLVLSLLMFATN-----------------Y  308 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------hhHHHHH-HHHHHHHHHHHHHHhc-----------------c
Confidence            23445556667778888888988888887311      0000000 1111111111111100                 0


Q ss_pred             eehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCC
Q 007604          453 PLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNL  532 (596)
Q Consensus       453 ~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~  532 (596)
                      ..+.+..+ ...+.+.......+..+++..|..|++.||+++|+.+....+|+.+++.+.+.+.+..             
T Consensus       309 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~-------------  374 (399)
T TIGR00893       309 VNIPYAAL-ALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT-------------  374 (399)
T ss_pred             chhHHHHH-HHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC-------------
Confidence            01222222 2233333333378889999999999999999999999999999999999999886522             


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHH
Q 007604          533 NVCHLDYYYAFFAILNVLNFVFFL  556 (596)
Q Consensus       533 ~~~~~~~~f~~~~~~~~v~~~~~~  556 (596)
                        +++...|++.++..+++.+.++
T Consensus       375 --g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       375 --GSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             --CchhHHHHHHHHHHHHHHHHHH
Confidence              1245667777776666655544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.92  E-value=8.5e-24  Score=229.76  Aligned_cols=150  Identities=11%  Similarity=0.012  Sum_probs=124.2

Q ss_pred             HHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 007604           55 NLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDI  134 (596)
Q Consensus        55 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  134 (596)
                      .....+.+++|++..+.|++.+.+.+++.++++++|+++||+ |||+++.++.++..++..+.+.....           
T Consensus        50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-----------  117 (467)
T PRK09556         50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS-----------  117 (467)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            334567789999999999999999999999999999999999 99999998888877776665543100           


Q ss_pred             CCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccc
Q 007604          135 NSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD  214 (596)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~  214 (596)
                              ...+...+++.|++.|++.+...|....+++|++|+++      |+++++++..+.++|.++++.+..++..
T Consensus       118 --------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~  183 (467)
T PRK09556        118 --------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGAN  183 (467)
T ss_pred             --------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHH
Confidence                    00278889999999999999999999999999999987      9999999999999999999888776654


Q ss_pred             cc---cchhhhHHHHHHHH
Q 007604          215 DV---GWALGYGLPALGLA  230 (596)
Q Consensus       215 ~~---g~~~~f~~~~~~~~  230 (596)
                      ..   +|+..|.+.++..+
T Consensus       184 ~~~~~~~~~~f~~~g~~~~  202 (467)
T PRK09556        184 YFFDGHVIGMFIFPSIIAL  202 (467)
T ss_pred             hhccCcchhHHHHHHHHHH
Confidence            32   58888877665443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=4e-23  Score=215.84  Aligned_cols=358  Identities=11%  Similarity=0.037  Sum_probs=235.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 007604           38 VVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVL  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~  117 (596)
                      ++...++..++.......+|.|.. +++.++.+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.++.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence            445555666665556666777766 5899999999999999999999999999999998 99999999998888887777


Q ss_pred             HHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHH
Q 007604          118 ALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFS  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  197 (596)
                      .......                   ..+.+.++++|++.|++.+...+...+++.|++|+++      |++.+++.+..
T Consensus        82 ~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  136 (365)
T TIGR00900        82 PFVALLG-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAV  136 (365)
T ss_pred             HHHHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHH
Confidence            6653111                   0267788899999999999999999999999999885      99999999999


Q ss_pred             HHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchh
Q 007604          198 IFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQE  277 (596)
Q Consensus       198 ~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (596)
                      ..+|..+||.+++++.+..||++.|++.++..+++.+..+..+.+.++++++++..++..+..                 
T Consensus       137 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  199 (365)
T TIGR00900       137 RSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDT-----------------  199 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHH-----------------
Confidence            999999999999999888999999988877655555444433221111100000000000000                 


Q ss_pred             hhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHH-HHHhhhhhhhhhcccceeee
Q 007604          278 LYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPI-LVATFVPSTMLAQINTLFVK  356 (596)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~  356 (596)
                                               .+.          +     +...+.+.+...+.. .+....+........+++..
T Consensus       200 -------------------------~~~----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (365)
T TIGR00900       200 -------------------------REG----------I-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQS  239 (365)
T ss_pred             -------------------------HhH----------H-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence                                     000          0     000011111111111 11111111111111122211


Q ss_pred             eeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhh
Q 007604          357 QGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYR  436 (596)
Q Consensus       357 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~  436 (596)
                      +..+.+       ....+.......++.+++.++..++.++..||           +.+..+..+.++++....+..   
T Consensus       240 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---  298 (365)
T TIGR00900       240 KYLGRG-------STHYGWVLAAFGLGALLGALLLGLLGRYFKRM-----------ALMTGAIFVIGLAILVVGLTP---  298 (365)
T ss_pred             HHhCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----------HHHHHHHHHHHHHHHHHHhhc---
Confidence            101111       11123334445555666666666654444333           334455555555555544421   


Q ss_pred             hhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 007604          437 LSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS  516 (596)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~  516 (596)
                                      + +.+...+..++.|++.+...+...++..|.+|++.||+++|+.+....++..+++.+.+.+.
T Consensus       299 ----------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       299 ----------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             ----------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            1 35556667788999999999999999999999999999999999999999999999998876


Q ss_pred             c
Q 007604          517 D  517 (596)
Q Consensus       517 ~  517 (596)
                      +
T Consensus       362 ~  362 (365)
T TIGR00900       362 D  362 (365)
T ss_pred             H
Confidence            4

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=1.7e-22  Score=215.50  Aligned_cols=341  Identities=11%  Similarity=0.062  Sum_probs=217.7

Q ss_pred             HHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 007604           48 AYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLK  127 (596)
Q Consensus        48 ~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~  127 (596)
                      +.......++. +.+++|.++.+.++..+.+.++..++.++.|+++||+ |||++++++..+..++.+++..+.      
T Consensus        28 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------   99 (406)
T PRK15402         28 ANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ------   99 (406)
T ss_pred             hhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc------
Confidence            33334444444 4578999999999999999999999999999999998 999999999999888888877663      


Q ss_pred             CCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 007604          128 PPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNT  207 (596)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~  207 (596)
                                        +...+++.|++.|++.+...+...+++.|.+|+++      |.+..++......+|..++|.
T Consensus       100 ------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~  155 (406)
T PRK15402        100 ------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPL  155 (406)
T ss_pred             ------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHH
Confidence                              67778899999999999888899999999999875      888888888888889999999


Q ss_pred             hhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhh
Q 007604          208 VLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYA  287 (596)
Q Consensus       208 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (596)
                      +++++.+..+||++|++.++..++..+..+...|+.+++++++.+..+..+..                           
T Consensus       156 i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  208 (406)
T PRK15402        156 VGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDY---------------------------  208 (406)
T ss_pred             HHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHH---------------------------
Confidence            99999888899999988776655554433332222111100000000000000                           


Q ss_pred             hcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHH-HHhhhhhhhhhcccceeeeeeccccccCC
Q 007604          288 QRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPIL-VATFVPSTMLAQINTLFVKQGTTLDRAIG  366 (596)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  366 (596)
                                                        ..+.+.+.+....... +............+.++ .+.    ....
T Consensus       209 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~----~g~~  249 (406)
T PRK15402        209 ----------------------------------KLVLKNRRFVAGALALGLVSLPLLAWIALSPVIL-ISG----EQLS  249 (406)
T ss_pred             ----------------------------------HHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHH----hCCC
Confidence                                              0000111111111111 11111111111111111 110    0110


Q ss_pred             CcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcc
Q 007604          367 SSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIV  446 (596)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  446 (596)
                         ....+.......++.+++.++.+++.||..+|           +.+.++.++.+++.+........           
T Consensus       250 ---~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~-----------  304 (406)
T PRK15402        250 ---SYEYGLLQVPVFGALIAGNLTLARLTSRRPLR-----------SLIRMGLWPMVAGLLLAALATVI-----------  304 (406)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHHHHHc-----------
Confidence               11111122223334555556666655554444           44666777676666655543210           


Q ss_pred             ccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhc
Q 007604          447 EKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD  517 (596)
Q Consensus       447 ~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~  517 (596)
                           ...+.++++...++.+++.+...+........ .+++.||+..+++++.+.++..+|+.+.+.+.+
T Consensus       305 -----~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        305 -----SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             -----ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                 01245566777888999998888777666544 445899999999999999999999999988764

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.92  E-value=2.8e-22  Score=215.64  Aligned_cols=175  Identities=17%  Similarity=0.138  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CChhhhhhHHH---HHHHHHHHhhhhhHHHhhhhcchhHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLH---HGTVKSANNVT---NWGGTIWVTPIFGAGVAEAYLGRYWTFVIAF  107 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~~~~~~~~~~~---~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~  107 (596)
                      .+....+..+++.+.+.. .+++..++.++++   .+..+.+.+.+   ...++..++++++|+++||+ |||+++.+++
T Consensus        23 ~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~  100 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISV  100 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence            344444556666666554 5666678888874   45554444444   44455559999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhh
Q 007604          108 FFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHK  187 (596)
Q Consensus       108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  187 (596)
                      +++.++.++++++++...                .+......+++.|+++|+|.|+..|...+++.|++|+++      |
T Consensus       101 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------r  158 (432)
T PRK10406        101 CMMCFGSLVIACLPGYET----------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------K  158 (432)
T ss_pred             HHHHHHHHHHhhcCCchh----------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------c
Confidence            999999999887642110                000134568899999999999999999999999999986      9


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhcc--------ccccchhhhHHHHHHHHHH
Q 007604          188 LSFFNWWMFSIFFGTLLGNTVLVYIQ--------DDVGWALGYGLPALGLAIA  232 (596)
Q Consensus       188 ~~~~~~~~~~~~ig~~l~~~~~~~l~--------~~~g~~~~f~~~~~~~~~~  232 (596)
                      +.+.++.+...+.|..+++.+...+.        ..+|||++|++.++..++.
T Consensus       159 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        159 GFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            99999888888888888876554432        2579999999877654443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.92  E-value=9.3e-23  Score=217.33  Aligned_cols=380  Identities=14%  Similarity=0.099  Sum_probs=246.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhh-----hhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVK-----SANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAF  107 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~-----~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~  107 (596)
                      |....+++..++..+++......+|.|.+ ++|.+..+     .+.+.+++.++..++.++.|+++||+ |||+++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~   91 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA   91 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence            45666667777778887777888888886 58888654     47888899999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhh
Q 007604          108 FFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHK  187 (596)
Q Consensus       108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  187 (596)
                      ++..++.+++..+.                        +.+.+++.|++.|++.+ ..+....++.|.+|+++      |
T Consensus        92 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~  140 (408)
T PRK09874         92 LGMGIVMVLMGLAQ------------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------S  140 (408)
T ss_pred             HHHHHHHHHHHHHh------------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------h
Confidence            88888887776653                        67788899999999865 45777888999998875      9


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhc
Q 007604          188 LSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKR  267 (596)
Q Consensus       188 ~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (596)
                      +++.++.+...++|..++|.+++.+.+..+|++.|++.++..++..+..+...++..+..++++. .+. +..   .   
T Consensus       141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~---~---  212 (408)
T PRK09874        141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LHM-REV---V---  212 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hHH-HHH---H---
Confidence            99999999999999999999999998888999999988776555544333322221110000000 000 000   0   


Q ss_pred             CCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHH-HHHhhhhhhh
Q 007604          268 NVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPI-LVATFVPSTM  346 (596)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~-~~~~~~~~~~  346 (596)
                                                       +                     ..++.+.....+.. +.........
T Consensus       213 ---------------------------------~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~  238 (408)
T PRK09874        213 ---------------------------------T---------------------SLKNPKLVLSLFVTTLIIQVATGSI  238 (408)
T ss_pred             ---------------------------------H---------------------hCcCCchHHHHHHHHHHHHHHHHHH
Confidence                                             0                     00011111111111 1111111111


Q ss_pred             hhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHH
Q 007604          347 LAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIM  426 (596)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~  426 (596)
                      ....+.+....... ...    .....+.+.....+..++..+..+++.||++||           +.+..+.++.++++
T Consensus       239 ~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~  302 (408)
T PRK09874        239 APILTLYVRELAGN-VSN----IAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----------KILITALIFSVLLL  302 (408)
T ss_pred             HHHHHHHHHHHhcc-chH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHH
Confidence            11111111111000 000    000112222334455566667777766666655           23445555555554


Q ss_pred             HHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHH
Q 007604          427 VIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNF  506 (596)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~  506 (596)
                      +.....                     .+.+.+.+..++.|++.+...|...+++.+..|++.+|+.+|+++....+|..
T Consensus       303 ~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~  361 (408)
T PRK09874        303 IPMSFV---------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNV  361 (408)
T ss_pred             HHHHHh---------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHH
Confidence            443332                     13445555667889999999999999999999999999999999999999999


Q ss_pred             HHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 007604          507 LSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAK  560 (596)
Q Consensus       507 lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~  560 (596)
                      +|+.+.+.+.+.                .++...|++.+++.+++.++.+...+
T Consensus       362 ~gp~~~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        362 TGPLMGAAISAN----------------YGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             hhHHHHHHHHhh----------------cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988642                23466788878777777666655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.92  E-value=6e-23  Score=222.32  Aligned_cols=402  Identities=14%  Similarity=0.149  Sum_probs=227.3

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccc
Q 007604           66 HGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTL  145 (596)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (596)
                      .+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++......                     .
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~---------------------~  125 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA---------------------L  125 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc---------------------c
Confidence            3389999999999999999999999999998 99999999999999998888665310                     1


Q ss_pred             hhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhh---hhccccccchhhh
Q 007604          146 QLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVL---VYIQDDVGWALGY  222 (596)
Q Consensus       146 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~---~~l~~~~g~~~~f  222 (596)
                      +.+.++++|++.|+|.+...+...+++.|.+|+++      |+++.++.+.+.++|..+++.++   +...+..+||++|
T Consensus       126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f  199 (481)
T TIGR00879       126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL  199 (481)
T ss_pred             chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            45578899999999999999999999999999886      99999999999999999999888   6666778999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhh
Q 007604          223 GLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRF  302 (596)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (596)
                      ++.++..++.++..++.++..+....+++ .++..+..    ++...............+..+.......+....     
T Consensus       200 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  269 (481)
T TIGR00879       200 GLQLIPAGLLFLGLFFLPESPRWLVGKGR-VEEARKSL----ARLRGTSGEDKELLDELELIDIKRSIEKRSVQP-----  269 (481)
T ss_pred             HHHHHHHHHHHHHHhcCCCChHHHHHcCC-hHHHHHHH----HHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccc-----
Confidence            99766555554444443322111000111 11111111    000000000000000000000000000000000     


Q ss_pred             hhhhhhhcCCCCCcccccch-hhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCcccc-cccccccch
Q 007604          303 FNKAAVKTGATNPWILCSVS-QVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKI-PPASLTGFV  380 (596)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~  380 (596)
                                  .|...... +....+.+...+...+.............+.+..       ..+  ++. .........
T Consensus       270 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g--~~~~~~~~~~~~~  328 (481)
T TIGR00879       270 ------------SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-------NAG--VSTDHAFLVSIIV  328 (481)
T ss_pred             ------------cHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-------HcC--CCchHHHHHHHHH
Confidence                        00000000 0000111111111101000000000000111111       111  111 123334445


Q ss_pred             hHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHH
Q 007604          381 TLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIML  460 (596)
Q Consensus       381 ~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  460 (596)
                      .+..+++.++..++.||++||           +.+.+++++.+++++...+......+.          .....+...+.
T Consensus       329 ~~~~~~~~~~~g~l~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~  387 (481)
T TIGR00879       329 GAVNFAFTFVAIFLVDRFGRR-----------PLLLIGAAGMAICLFVLGILGASFVTG----------SSKSSGNVAIV  387 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHHhhcccCC----------cccchhHHHHH
Confidence            556667777777877777666           335556666666665555321100000          00001222233


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHH
Q 007604          461 PQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYY  540 (596)
Q Consensus       461 ~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~  540 (596)
                      ...++.+.......+....++.|..|++.|++++|+.+....+|+++++.+.+.+.+..                ++.+.
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~----------------~~~~~  451 (481)
T TIGR00879       388 FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI----------------GVGGV  451 (481)
T ss_pred             HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------Cccce
Confidence            33333333333445667778899999999999999999999999999999998876421                23456


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccc
Q 007604          541 YAFFAILNVLNFVFFLVVAKFYV  563 (596)
Q Consensus       541 f~~~~~~~~v~~~~~~~~~~~~~  563 (596)
                      |++.+++.+++.++.+++.++.+
T Consensus       452 f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       452 FIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             ehhHHHHHHHHHHHHheecccCC
Confidence            77777777777666665555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.92  E-value=1.2e-22  Score=215.81  Aligned_cols=175  Identities=15%  Similarity=0.229  Sum_probs=149.3

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHH
Q 007604           27 SKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIA  106 (596)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~  106 (596)
                      ..+.+|+.+...++..+...+..+......+ .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~   83 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS   83 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence            3456677777777777777777766655555 56789999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhh
Q 007604          107 FFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAH  186 (596)
Q Consensus       107 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  186 (596)
                      .++..++.+++.++.                        +...+++.|++.|++.+...+...+++.|.+|+++      
T Consensus        84 ~~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------  133 (405)
T TIGR00891        84 IVLFSAGTLACGFAP------------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------  133 (405)
T ss_pred             HHHHHHHHHHHHHhc------------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------
Confidence            999999888887764                        67788899999999999999999999999999886      


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhcccccc--chhhhHHHHHHHHHHH
Q 007604          187 KLSFFNWWMFSIFFGTLLGNTVLVYIQDDVG--WALGYGLPALGLAIAI  233 (596)
Q Consensus       187 r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~  233 (596)
                      |+++.++.+....+|..+++.+.+.+.+..+  ||+.|++.++..++.+
T Consensus       134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888876655  9999987665544443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.92  E-value=6e-23  Score=213.58  Aligned_cols=350  Identities=15%  Similarity=0.207  Sum_probs=228.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Q 007604           39 VVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLA  118 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~  118 (596)
                      ++..++..+........++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            3455666666666667777688899999999999999999999999999999999998 999999999999999866655


Q ss_pred             HHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHH
Q 007604          119 LSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSI  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  198 (596)
                      ++.                        +.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.+...
T Consensus        81 ~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~  130 (352)
T PF07690_consen   81 FAS------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGF  130 (352)
T ss_dssp             HHC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHH
T ss_pred             hhh------------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchh
Confidence            542                        55689999999999999999999999999999986      999999999999


Q ss_pred             HHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhh
Q 007604          199 FFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQEL  278 (596)
Q Consensus       199 ~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (596)
                      ++|..++|.+++++.+..+||+.|++.++..++..++.....++.+++++++++.+                    ..  
T Consensus       131 ~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~--------------------~~--  188 (352)
T PF07690_consen  131 SLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKE--------------------SE--  188 (352)
T ss_dssp             HHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTT--------------------TT--
T ss_pred             hhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccc--------------------cc--
Confidence            99999999999999988999999999888776665543333322111111110000                    00  


Q ss_pred             hhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHH-hHHHHHHHhhhhhhhhhcccceeeee
Q 007604          279 YELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQML-AMIPILVATFVPSTMLAQINTLFVKQ  357 (596)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (596)
                       ...          +.+..+                .+     +...+.+.+. .....+.....+.......+. +..+
T Consensus       189 -~~~----------~~~~~~----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~  235 (352)
T PF07690_consen  189 -SKK----------PKPLKP----------------GF-----KSLFKNPVLWILLIAFFLFFFVFSGFSFFLPL-YLQE  235 (352)
T ss_dssp             ---H----------HHCCCH-----------------C-----THHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HCCH
T ss_pred             -ccc----------cccccc----------------cc-----ccccccchhhhhhhhhhHHHHHHHHhhcccch-hhhh
Confidence             000          000000                00     0111222121 111111111122222222222 1111


Q ss_pred             eccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007604          358 GTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRL  437 (596)
Q Consensus       358 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~  437 (596)
                      ..+.+   +   ....+.......+..+++.++.+++.||+.+|           +...+......++.+...+...   
T Consensus       236 ~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~---  295 (352)
T PF07690_consen  236 VLGFS---G---PSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-----------RRLLIAILLLILGALGLLLLPF---  295 (352)
T ss_dssp             HHHCC---T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHHCCSHH---
T ss_pred             ccCCC---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHHH---
Confidence            11111   0   01122334445555556667777766665544           2233333334433333332211   


Q ss_pred             hhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHh
Q 007604          438 SVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSS  509 (596)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~  509 (596)
                                     ..+..+.+...++.|++.+...+...++..+.+|++.||++.|+.+....+|..+||
T Consensus       296 ---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  296 ---------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             ---------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence                           124455666778899999999999999999999999999999999999999999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=1.3e-22  Score=222.43  Aligned_cols=181  Identities=19%  Similarity=0.125  Sum_probs=134.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDK-----LHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAF  107 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~  107 (596)
                      +.+....+..+...+....+....+. +.++     .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.
T Consensus        16 ~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~   93 (502)
T TIGR00887        16 RAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence            34444444444444444333333443 3322     234566778999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhh
Q 007604          108 FFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHK  187 (596)
Q Consensus       108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  187 (596)
                      ++..++.++++++.+..                  ...+...++++|++.|++.|+..+..+.++.|.+|+++      |
T Consensus        94 ~~~~v~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------R  149 (502)
T TIGR00887        94 IIMIIATVASGLSPGSS------------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------R  149 (502)
T ss_pred             HHHHHHHHHHHHccCcc------------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------H
Confidence            99999988887653100                  00136789999999999999999999999999999997      9


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhccc-----------------------cccchhhhHHHHHHHHHHHHHHHhc
Q 007604          188 LSFFNWWMFSIFFGTLLGNTVLVYIQD-----------------------DVGWALGYGLPALGLAIAIAIFLAG  239 (596)
Q Consensus       188 ~~~~~~~~~~~~ig~~l~~~~~~~l~~-----------------------~~g~~~~f~~~~~~~~~~~~~~~~~  239 (596)
                      +++.++.+....+|..+++.+...+..                       .++||++|.+.++..++..+..+..
T Consensus       150 g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~l  224 (502)
T TIGR00887       150 GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTI  224 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999988877654321                       2479999988776655554443333

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.92  E-value=2e-22  Score=214.04  Aligned_cols=358  Identities=13%  Similarity=0.076  Sum_probs=229.6

Q ss_pred             HHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 007604           48 AYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLK  127 (596)
Q Consensus        48 ~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~  127 (596)
                      .++.+...+| .+++++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..++.++.++.+++++++      
T Consensus        24 ~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~------   95 (393)
T PRK09705         24 LLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP------   95 (393)
T ss_pred             hhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc------
Confidence            3344444455 56779999999999999999999999999999999998 999999999999999999999875      


Q ss_pred             CCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 007604          128 PPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNT  207 (596)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~  207 (596)
                                        +...++++|+++|+|.+...+....++.+++| ++      |+.+.+.+..+.+.|..+|+.
T Consensus        96 ------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~  150 (393)
T PRK09705         96 ------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAA  150 (393)
T ss_pred             ------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHH
Confidence                              67788999999999999999999999999997 43      999999999999999999999


Q ss_pred             hhhhccccc-cchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHh
Q 007604          208 VLVYIQDDV-GWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYY  286 (596)
Q Consensus       208 ~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (596)
                      +++++.+.. +||..+.+.++..++.+...+...++.++++++++                                   
T Consensus       151 ~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  195 (393)
T PRK09705        151 ITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASSHKTT-----------------------------------  195 (393)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-----------------------------------
Confidence            998887764 79988766544433333222222111110000000                                   


Q ss_pred             hhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCC
Q 007604          287 AQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIG  366 (596)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  366 (596)
                                .+                ..     +..++.+.....+...+....++....+.+.+...+  ..+    
T Consensus       196 ----------~~----------------~~-----~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~--g~s----  238 (393)
T PRK09705        196 ----------TT----------------PV-----RVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEI--GAS----  238 (393)
T ss_pred             ----------cC----------------Cc-----ccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC----
Confidence                      00                00     000111111111122222233333333333333221  111    


Q ss_pred             CcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcc
Q 007604          367 SSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIV  446 (596)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  446 (596)
                         ....+.......++.+++.++.+++.||.++|           +.+.+++.+.+++.+......             
T Consensus       239 ---~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----------~~~~~~~~l~~~~~~~~~~~~-------------  291 (393)
T PRK09705        239 ---AQYSGSLLALMTLGQAAGALLMPAMARHQDRR-----------KLLMLALVLQLVGFCGFIWLP-------------  291 (393)
T ss_pred             ---hhhhhHHHHHHHHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHHHHHHcc-------------
Confidence               11223344555666667766766655554443           335556666665554443221             


Q ss_pred             ccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhcc-chhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCC
Q 007604          447 EKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAP-ESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHK  525 (596)
Q Consensus       447 ~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~  525 (596)
                             .+...+  ..++.+++.+...|.......+..| ++.+|+.+|+.+....++..+++.+.+++.+.+      
T Consensus       292 -------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~------  356 (393)
T PRK09705        292 -------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS------  356 (393)
T ss_pred             -------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence                   111111  2245577777777777777777774 678999999999999999999999999987643      


Q ss_pred             CccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007604          526 GWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKF  561 (596)
Q Consensus       526 ~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  561 (596)
                               +.+...|.+.++..++..+..+.+.++
T Consensus       357 ---------g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        357 ---------GNYLMDWAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             ---------CCchHHHHHHHHHHHHHHHHHHHhccc
Confidence                     123345555555555555555554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.92  E-value=2.8e-22  Score=218.17  Aligned_cols=174  Identities=11%  Similarity=0.036  Sum_probs=132.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      +++.++......++..+..+.....++ ++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            444555555555555555555544443 66789999999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++.++.+++.                        +...+++.|++.|++.+... ....+++|++|+++      |+++
T Consensus       112 ~~~~~~~~~~~------------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a  160 (476)
T PLN00028        112 APAVFCMSLVS------------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTA  160 (476)
T ss_pred             HHHHHHHHHhc------------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHH
Confidence            88888777764                        66678888999999988654 35567899999886      9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcc----c-----cccchhhhHHHHHHHHHHHHHHH
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQ----D-----DVGWALGYGLPALGLAIAIAIFL  237 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~----~-----~~g~~~~f~~~~~~~~~~~~~~~  237 (596)
                      .++.+...++|+.+++.+.+.+.    +     ..|||+.|++.+++.++..+..+
T Consensus       161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~  216 (476)
T PLN00028        161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL  216 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            99988777888877766554432    1     25899999988766544443333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.92  E-value=4.6e-23  Score=216.19  Aligned_cols=338  Identities=10%  Similarity=0.001  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 007604           49 YHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKP  128 (596)
Q Consensus        49 ~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~  128 (596)
                      .|.. +.+..++.+++|++..+.+++.+++.++..+++++.|+++||+ |||+++.++.++..++.++++++.       
T Consensus        19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~-------   89 (377)
T TIGR00890        19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD-------   89 (377)
T ss_pred             Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-------
Confidence            4433 4455678889999999999999999999999999999999998 999999999999999998888875       


Q ss_pred             CCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhh
Q 007604          129 PPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTV  208 (596)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~  208 (596)
                                       +...++++|++.|++.+...+.......+++|++       |+++.++.....++|..+++.+
T Consensus        90 -----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~  145 (377)
T TIGR00890        90 -----------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPDK-------RGLASGIIIGGYGLGSFILSPL  145 (377)
T ss_pred             -----------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcc-------cHHHHHHHHHhcchhHhHHHHH
Confidence                             7888899999999999988888888888888743       9999999999999998877667


Q ss_pred             hhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhh
Q 007604          209 LVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQ  288 (596)
Q Consensus       209 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (596)
                      .+.+.+..|||+.|++.++..++..+..+...++.++++.+++.                    +..    .        
T Consensus       146 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~----~--------  193 (377)
T TIGR00890       146 ITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI--------------------EVS----V--------  193 (377)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc--------------------ccc----h--------
Confidence            77777778999999988766554443333222211110000000                    000    0        


Q ss_pred             cCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCc
Q 007604          289 RGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSS  368 (596)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  368 (596)
                               +....   .+               ..++++........+........... ....+. +    +....  
T Consensus       194 ---------~~~~~---~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~----~~~~~--  238 (377)
T TIGR00890       194 ---------KDYTV---WE---------------MLRTPQFWVLYLSFFLNAVSGLLLIG-LYKPYG-Q----SLGLS--  238 (377)
T ss_pred             ---------hhhhH---HH---------------HHcCccHHHHHHHHHHHhHHHHHHHH-HHHHHH-H----HcCCC--
Confidence                     00000   00               00011111111111111111111111 111111 1    11111  


Q ss_pred             ccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcccc
Q 007604          369 FKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEK  448 (596)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (596)
                       ....+.......+..+++.++..++.||++||+           .+.++.++.+++.+......               
T Consensus       239 -~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~~---------------  291 (377)
T TIGR00890       239 -DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK-----------TMSIVFGISAVGMAAMLFIP---------------  291 (377)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hhhHHHHHHHHHHHHHHHcc---------------
Confidence             111233455566777788888888888877662           25556666666655544321               


Q ss_pred             CCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhc
Q 007604          449 GQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD  517 (596)
Q Consensus       449 ~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~  517 (596)
                          ..+.+.++...++.+++.+...+....+..|..|++.||+..|+.+....+|..+++.+.+.+.+
T Consensus       292 ----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       292 ----MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             ----cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                11222233334556666666666677888999999999999999999999999999999998864

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=1.1e-21  Score=208.45  Aligned_cols=173  Identities=11%  Similarity=0.109  Sum_probs=148.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHH
Q 007604           29 RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFF  108 (596)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  108 (596)
                      |..|+..+.+.+..++.....|.....+|. +.+++|.++.+.++..+.+.++..+++++.|+++||+ |||++++.+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~   93 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAV   93 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHH
Confidence            345666666666666665666666666665 4568999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhh
Q 007604          109 FYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL  188 (596)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  188 (596)
                      +..++.+++.++.                        +.+.+++.|++.|++.+...|...+++.|++|+++      |+
T Consensus        94 ~~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~  143 (394)
T PRK10213         94 LLTLSCLLVSFAN------------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VP  143 (394)
T ss_pred             HHHHHHHHHHHHC------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HH
Confidence            9999988887763                        78899999999999999999999999999999885      99


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHH
Q 007604          189 SFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAI  233 (596)
Q Consensus       189 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  233 (596)
                      ++.++.....++|..+||.+++++.+.+|||+.|++.++..++..
T Consensus       144 ~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        144 KALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998999999998776544433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=4.8e-23  Score=208.67  Aligned_cols=401  Identities=13%  Similarity=0.081  Sum_probs=253.9

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGI---SSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~---~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      -+-++...++.+.++|-+   +....+++.++.++|.+|.|.+.+++++.+.++..+.|.++||. +.|+.+-+++++.+
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsa  105 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHH
Confidence            355666667777777765   35566688999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      +..++..+++                        +...+.+..++.|...|.-.|.+...++.++|++|      ||+..
T Consensus       106 i~nil~Gfs~------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~  155 (448)
T COG2271         106 IVNILFGFSP------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWW  155 (448)
T ss_pred             HHHHHHhhhh------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceE
Confidence            9999999885                        67788888889999999999999999999999998      99999


Q ss_pred             HHHHHHHHHHHHHhhhhh--hhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCC
Q 007604          192 NWWMFSIFFGTLLGNTVL--VYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNV  269 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~--~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (596)
                      ++++.+-|+|+++.|++.  +++..+.+||..|++++++.++..++.+...++.+....-+ +.++.             
T Consensus       156 siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP-~ie~~-------------  221 (448)
T COG2271         156 SIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP-PIEEY-------------  221 (448)
T ss_pred             EEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CHHHh-------------
Confidence            999999999999999999  88888889999999999765444433333333222211000 00000             


Q ss_pred             CCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhc
Q 007604          270 PLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQ  349 (596)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~  349 (596)
                        -+++.+.++      .++..+.+..++.+.                    +.+-+-|.   +..+.+..+..|.+-..
T Consensus       222 --~~d~~e~~~------~~~~~~~ls~~~i~~--------------------~YVL~Nk~---iW~la~a~vfvYivR~g  270 (448)
T COG2271         222 --RGDPLEIYE------EEKENEGLTAWQIFV--------------------KYVLKNKL---IWLLALANVFVYVVRYG  270 (448)
T ss_pred             --hcCchhhhh------hhccCCCccHHHHHH--------------------HHHHcChH---HHHHHHHHHHHHHHHHH
Confidence              000111100      000000011010000                    00111111   11122222222322221


Q ss_pred             ---ccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHH
Q 007604          350 ---INTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIM  426 (596)
Q Consensus       350 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~  426 (596)
                         ..+.+..+..+.+       ........+..-.+.+.+..+.+++.||+.+.+++      +  .-.+.+++..+++
T Consensus       271 i~dW~p~YL~e~k~~s-------~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~------p--~~~i~~~~i~~~~  335 (448)
T COG2271         271 INDWGPLYLSEVKGFS-------LVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG------P--MALIFMLLITASL  335 (448)
T ss_pred             HhhhHHHHHHHhcCCC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc------h--HHHHHHHHHHHHH
Confidence               1223333322222       11233344555667778888999999999866321      1  1222233333333


Q ss_pred             HHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhh--HHHHHhhccchhHHHHHHHHHHHHhH-
Q 007604          427 VIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAK--IEFFYDQAPESMKSLGTSYSMTTLGV-  503 (596)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~--~~~~~~~~P~~~rg~~~g~~~~~~~i-  503 (596)
                      +.+-...                   +.+.+...+.++.+|+  .+..|..  -....|.+|++..|++.|+..++..+ 
T Consensus       336 ~~~w~~~-------------------~~~~~l~~~~l~~iGf--~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~  394 (448)
T COG2271         336 VLYWLAP-------------------NGSYLLDAILLFIIGF--LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLI  394 (448)
T ss_pred             HHHHcCC-------------------CccHHHHHHHHHHHHH--HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHh
Confidence            3332221                   1233333333344443  3333332  23456889999999999999999998 


Q ss_pred             HHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 007604          504 GNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYV  563 (596)
Q Consensus       504 g~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  563 (596)
                      |+.++....+.+.+.      -+|          ...|.++.+.++++.++++...+..+
T Consensus       395 Ga~~a~~~~g~i~d~------~gW----------~g~Fi~~~~~a~l~~lll~~~~~~~~  438 (448)
T COG2271         395 GAALAGLPLGYIADT------WGW----------DGGFIVLSIAALLAILLLLPVWNAEE  438 (448)
T ss_pred             hHHhcCCcceeeEec------CCC----------cchHHHHHHHHHHHHHHHHHHHhhcc
Confidence            888888888887653      244          34577667777777777666665433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.92  E-value=2e-22  Score=219.90  Aligned_cols=399  Identities=12%  Similarity=0.102  Sum_probs=243.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      +..+++..++..+....+ .....++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIV-NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            344445555554544434 4444456678999999999999999999999999999999998 99999999999999999


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      ++++.+.                        +...++++|+++|++.+...+...+++.|.+|+++      |+++.+++
T Consensus        82 ~~~~~~~------------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~  131 (485)
T TIGR00711        82 LLCGVAP------------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIW  131 (485)
T ss_pred             HHHhCcC------------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHH
Confidence            8887663                        67788999999999999999999999999999875      99999999


Q ss_pred             HHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHH-H-----HHHHHHHHhcC
Q 007604          195 MFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRM-A-----KVIVAAIRKRN  268 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~  268 (596)
                      +....+|..+||.+++++.+..|||+.|++.+...++..+..+...++.++++.++...... .     ..+.....+..
T Consensus       132 ~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~  211 (485)
T TIGR00711       132 GLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGP  211 (485)
T ss_pred             HHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999887665554444333333211111111110000 0     00000000000


Q ss_pred             CCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHh-HHHHHHHhhhhhhhh
Q 007604          269 VPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLA-MIPILVATFVPSTML  347 (596)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~-~~~~~~~~~~~~~~~  347 (596)
                      .....++.+.....-.....           .........+  ...+.   .+.+..+.|.+.. .+..++....++...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (485)
T TIGR00711       212 ERGWFDSNEILILSITGLVA-----------IIAFVVWELT--DDNPL---VDLRLFKYRNFTIGCVYMSLLGLGLYGSF  275 (485)
T ss_pred             CCCCCCchHHHHHHHHHHHH-----------HHHHHHHHHc--CCCCc---cCHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence            00000000000000000000           0000000000  00000   0000011111111 111111122222211


Q ss_pred             hcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 007604          348 AQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMV  427 (596)
Q Consensus       348 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~  427 (596)
                      ...+.++ ....+.+       ....+.......++.+++.++..++.||+++|           +.+.++.++.+++..
T Consensus       276 ~~~p~~~-~~~~g~s-------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~g~~~~~~~~~  336 (485)
T TIGR00711       276 YLLPLYL-QQVLGYT-------ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR-----------KLVTIGLILYAVGFY  336 (485)
T ss_pred             HHHHHHH-HHhcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----------HHHHHHHHHHHHHHH
Confidence            1111111 1111111       11223444556677777888888877666655           346667777777666


Q ss_pred             HHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHH
Q 007604          428 IASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFL  507 (596)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l  507 (596)
                      ...+...                 ...+.+..+...++.|++.+...+.......+..|++.+|+++|+.++.+.+|+.+
T Consensus       337 ~~~~~~~-----------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i  399 (485)
T TIGR00711       337 WRAFTFT-----------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSI  399 (485)
T ss_pred             HHhccCC-----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHH
Confidence            5542110                 02344555666788999999988888888889999999999999999999999999


Q ss_pred             HhHHHhhhhc
Q 007604          508 SSFLLSTVSD  517 (596)
Q Consensus       508 g~~~~~~i~~  517 (596)
                      |+.+.+.+.+
T Consensus       400 g~~i~g~~~~  409 (485)
T TIGR00711       400 GTALITTILT  409 (485)
T ss_pred             HHHHHHHHHH
Confidence            9999988864

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.91  E-value=4.9e-22  Score=213.21  Aligned_cols=166  Identities=13%  Similarity=0.094  Sum_probs=142.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      +++.+....+..+...+..+.. .++..++.+++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~   93 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            3445555555555555555544 4455567789999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++.++++++.                        +...++++|++.|++.+...+....++.|.+|+++      |+++
T Consensus        94 ~~~~~~~~~~~------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~  143 (426)
T PRK12307         94 SVGTGLSGLAS------------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKA  143 (426)
T ss_pred             HHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHh
Confidence            99998888774                        67889999999999999999999999999999886      9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHH
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALG  228 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~  228 (596)
                      .++.+.+..+|.++++.+.+++.+..+||+.|++.++.
T Consensus       144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            99999999999999999999888889999999876543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.91  E-value=4.2e-22  Score=215.60  Aligned_cols=150  Identities=11%  Similarity=0.056  Sum_probs=121.2

Q ss_pred             HHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 007604           55 NLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDI  134 (596)
Q Consensus        55 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  134 (596)
                      ....|+.++ |++..+.+++.+.+.++..++++++|+++||+ |||++++++.++..++.++++++...           
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~-----------  116 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA-----------  116 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence            344567777 99999999999999999999999999999998 99999999999988888877765210           


Q ss_pred             CCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH-Hhhhhhhhcc
Q 007604          135 NSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTL-LGNTVLVYIQ  213 (596)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-l~~~~~~~l~  213 (596)
                               ..+...+++.|++.|++.+...|.....+.|++|+++      |+++.++++.+.++|+. .+|+++..+.
T Consensus       117 ---------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~  181 (452)
T PRK11273        117 ---------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMA  181 (452)
T ss_pred             ---------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence                     0156677888999999999988888888999999876      99999999999999874 4554433333


Q ss_pred             ccccchhhhHHHHHHHHHH
Q 007604          214 DDVGWALGYGLPALGLAIA  232 (596)
Q Consensus       214 ~~~g~~~~f~~~~~~~~~~  232 (596)
                      ...|||+.|++.++..++.
T Consensus       182 ~~~gw~~~f~i~~~~~~~~  200 (452)
T PRK11273        182 WFNDWHAALYMPAFAAILV  200 (452)
T ss_pred             HhccHHHHHHHHHHHHHHH
Confidence            3458999999877654443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.91  E-value=8.2e-22  Score=207.39  Aligned_cols=365  Identities=11%  Similarity=0.094  Sum_probs=225.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHH-HHHHHHHHHHHHH
Q 007604           40 VYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVI-AFFFYLMGMIVLA  118 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~-~~~~~~i~~~~~~  118 (596)
                      +..++..++.......++.|+++++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.++. +..+..++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence            446667777777889999999999999999999999999999999999999999998 99887654 4555556666666


Q ss_pred             HHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh--HHHHHH
Q 007604          119 LSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF--FNWWMF  196 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~  196 (596)
                      .+.                        +...+++.|++++.+.+...|...++..|..|++.      |+..  .+..+.
T Consensus        83 ~~~------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~  132 (375)
T TIGR00899        83 WNR------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRA  132 (375)
T ss_pred             hcc------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHH
Confidence            553                        66677788888888877788888888888877654      4433  577777


Q ss_pred             HHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCch
Q 007604          197 SIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQ  276 (596)
Q Consensus       197 ~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (596)
                      ..++|..+||.+++++.+..|||+.|++.++..++..+..+...++.++++++++.                      ..
T Consensus       133 ~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~  190 (375)
T TIGR00899       133 QISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT----------------------RL  190 (375)
T ss_pred             HHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC----------------------cc
Confidence            88999999999999998889999999988876555444433322321111100000                      00


Q ss_pred             hhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeee
Q 007604          277 ELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVK  356 (596)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  356 (596)
                                        +.++                .+   +   .++.+.+...  .++............+.+...
T Consensus       191 ------------------~~~~----------------~~---~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  228 (375)
T TIGR00899       191 ------------------EVRG----------------LL---A---SRDTRLLFVA--CTLMWGCNILYIINMPLLIIH  228 (375)
T ss_pred             ------------------hhhh----------------hh---c---CcchHHHHHH--HHHHHHHHHHHHhhhHHHHHH
Confidence                              0000                00   0   0011111111  111111111111111111111


Q ss_pred             eeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhh
Q 007604          357 QGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYR  436 (596)
Q Consensus       357 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~  436 (596)
                       ..+.+       ....+..........+++.++.+++.||+++|           +.+.++.++..+.++.....    
T Consensus       229 -~~g~~-------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~----  285 (375)
T TIGR00899       229 -ELGLP-------DKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR-----------RLMLLAALAGVAFYTGLAAD----  285 (375)
T ss_pred             -HcCCC-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----------hHHHHHHHHHHHHHHHHHHH----
Confidence             01111       11111222223333444555666766666555           22444444433333332221    


Q ss_pred             hhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 007604          437 LSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS  516 (596)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~  516 (596)
                                       .+.+..+...++.+++.+...+....+..|..|++ +++++|+++....+|..+++.+.+.+.
T Consensus       286 -----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~  347 (375)
T TIGR00899       286 -----------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILA  347 (375)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             13444455567778888888888888889988865 569999999999999999999999886


Q ss_pred             ccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHH
Q 007604          517 DITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFL  556 (596)
Q Consensus       517 ~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~  556 (596)
                      +..                ++...|++.++..+++.++..
T Consensus       348 ~~~----------------g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       348 ERW----------------SYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             Hhc----------------cchhHHHHHHHHHHHHHHHHh
Confidence            522                235567776766666655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.91  E-value=3.4e-22  Score=218.89  Aligned_cols=170  Identities=15%  Similarity=0.255  Sum_probs=144.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH
Q 007604           30 GGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF  109 (596)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  109 (596)
                      .+|+.+..+.+..++..+....+. .+..++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            445556666666666666555444 444567789999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      .+++.+++.++.                        +...+++.|++.|++.++..+...+++.|.+|+++      |++
T Consensus        95 ~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  144 (496)
T PRK03893         95 FSVGTLACGFAP------------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNK  144 (496)
T ss_pred             HHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence            999988888764                        67788999999999999999999999999999885      999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHH
Q 007604          190 FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAI  231 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~  231 (596)
                      +.++.+...++|..++|.+.+++.+.++||+.|++.++..++
T Consensus       145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~  186 (496)
T PRK03893        145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIF  186 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999889999999876544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.91  E-value=8.8e-22  Score=204.11  Aligned_cols=347  Identities=16%  Similarity=0.225  Sum_probs=257.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 007604           37 FVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIV  116 (596)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~  116 (596)
                      .+.+..++..+..+......+.|.+ ++|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence            3455566777777777777777765 6799999999999999999999999999999998 9999999999999999988


Q ss_pred             HHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHH
Q 007604          117 LALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMF  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  196 (596)
                      .....                        +...+++.|++.|++.+...+...++..|.+|+++      |++.+++.+.
T Consensus        81 ~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  130 (352)
T cd06174          81 LAFAS------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSA  130 (352)
T ss_pred             HHHhc------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHH
Confidence            87763                        67788999999999999999999999999999976      9999999999


Q ss_pred             HHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCch
Q 007604          197 SIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQ  276 (596)
Q Consensus       197 ~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (596)
                      ..++|..++|.+.+.+.+..+|++.+++.++..++..+.....+           +  .                     
T Consensus       131 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--~---------------------  176 (352)
T cd06174         131 GFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-----------R--L---------------------  176 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------H--H---------------------
Confidence            99999999999999999888899999988876555544433221           0  0                     


Q ss_pred             hhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeee
Q 007604          277 ELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVK  356 (596)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  356 (596)
                                                                          .....+................+.+...
T Consensus       177 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (352)
T cd06174         177 ----------------------------------------------------LLLLALAFFLLSFGYYGLLTYLPLYLQE  204 (352)
T ss_pred             ----------------------------------------------------HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                                                                0000000011111111111111111111


Q ss_pred             eeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhh
Q 007604          357 QGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYR  436 (596)
Q Consensus       357 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~  436 (596)
                      . .+.+       ....+.......+..+++.++..++.||.++|+          ..+..+.++..++.+.....    
T Consensus       205 ~-~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~~~~~~----  262 (352)
T cd06174         205 V-LGLS-------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR----------LLLLIGLLLAALGLLLLALA----  262 (352)
T ss_pred             h-cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHh----
Confidence            0 0001       122344556667777888888888877777662          04667777777777666543    


Q ss_pred             hhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 007604          437 LSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS  516 (596)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~  516 (596)
                                       .+.+...+..++.+++.+...+...++..|..|++.|++.+|+.+....++..+++.+.+.+.
T Consensus       263 -----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~  325 (352)
T cd06174         263 -----------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL  325 (352)
T ss_pred             -----------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                             235566777899999999999999999999999999999999999999999999999999886


Q ss_pred             ccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHH
Q 007604          517 DITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFL  556 (596)
Q Consensus       517 ~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~  556 (596)
                      +.                .++...+++.+++.+++.++.+
T Consensus       326 ~~----------------~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         326 DT----------------GGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             cc----------------cCcchHHHHHHHHHHHHHHHhe
Confidence            41                2335567777777766655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.91  E-value=2.1e-21  Score=204.90  Aligned_cols=352  Identities=10%  Similarity=0.097  Sum_probs=224.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |..+.+....+...++.......+| ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~   82 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFAL   82 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHH
Confidence            3344444434444444444444444 45678999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.+++..+.                        +...+++.|++.|++.+...+...+++.|.+|+++      |++.++
T Consensus        83 ~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  132 (385)
T TIGR00710        83 SSLGLALSN------------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYS  132 (385)
T ss_pred             HHHHHHHHc------------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHH
Confidence            888887764                        67788899999999999999999999999999875      999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCC
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLP  272 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (596)
                      +.+....+|..++|.+++++.+..+|+.+|++.++..++..+..+...++.+.+++++ ...+..+..+           
T Consensus       133 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------  200 (385)
T TIGR00710       133 ILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI-QISTYFETFL-----------  200 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC-CHHHHHHHHH-----------
Confidence            9999999999999999999988889999998877665555444433333211111000 0000000000           


Q ss_pred             CCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHH-HHHHHhhhhhhhhhccc
Q 007604          273 IDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMI-PILVATFVPSTMLAQIN  351 (596)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~-~~~~~~~~~~~~~~~~~  351 (596)
                                                                        +..+.+.+.... ...+....++...... 
T Consensus       201 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  229 (385)
T TIGR00710       201 --------------------------------------------------LLLKSKMFWGYALIYGASFGGFFAFFSGA-  229 (385)
T ss_pred             --------------------------------------------------HHHcCchhHHHHHHHHHHHHHHHHHHHcC-
Confidence                                                              000011111111 1111111111111111 


Q ss_pred             ceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 007604          352 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASF  431 (596)
Q Consensus       352 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~  431 (596)
                      +.+..+..+.+       ....+.......+..+++.++..++.||+++|           +.+..+.++.+++.+....
T Consensus       230 ~~~~~~~~g~~-------~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  291 (385)
T TIGR00710       230 PFVYIDIMGVS-------PSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK-----------SLLRMGLILFAVSAVLLEI  291 (385)
T ss_pred             hHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHH
Confidence            11111111111       11123344455666777777888877666655           3355556566655544443


Q ss_pred             HhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHH
Q 007604          432 TERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFL  511 (596)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~  511 (596)
                      ....                ...+...++...++.|++.+...+....+..|..| +.+|+++++.+.....++.+.+.+
T Consensus       292 ~~~~----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~  354 (385)
T TIGR00710       292 TAIL----------------GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL  354 (385)
T ss_pred             HHHh----------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence            2110                01123344455677888889888888888888887 579999999988776655555555


Q ss_pred             Hhh
Q 007604          512 LST  514 (596)
Q Consensus       512 ~~~  514 (596)
                      .+.
T Consensus       355 ~~~  357 (385)
T TIGR00710       355 VSL  357 (385)
T ss_pred             HHh
Confidence            553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00898 2A0119 cation transport protein

Probab=99.91  E-value=8.8e-22  Score=216.18  Aligned_cols=385  Identities=14%  Similarity=0.100  Sum_probs=233.4

Q ss_pred             HHhhhcCCC---hhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 007604           59 YLTDKLHHG---TVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDIN  135 (596)
Q Consensus        59 yl~~~lg~~---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  135 (596)
                      .+.++++++   ..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.++.+++.              
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~--------------  178 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP--------------  178 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence            456789998   89999999999999999999999999998 999999999999999888888764              


Q ss_pred             CccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccc
Q 007604          136 SQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDD  215 (596)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~  215 (596)
                                +...+++.|++.|++.++..+...+++.|.+|+++      |+.+.++...+..+|.++++.++..+.+ 
T Consensus       179 ----------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~-  241 (505)
T TIGR00898       179 ----------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD-  241 (505)
T ss_pred             ----------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH-
Confidence                      78889999999999999999999999999999986      9999999988999999999977766543 


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCccccc
Q 007604          216 VGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIG  295 (596)
Q Consensus       216 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (596)
                        ||+.|++.++..++..+..+..++..+....++ ..++..+.+....+..+...+   .+.......+ .....    
T Consensus       242 --wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~-~~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~-~~~~~----  310 (505)
T TIGR00898       242 --WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQG-RIEEALKILQRIAKINGKKLP---AEVLSLSLEK-DLSSS----  310 (505)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCC-CHHHHHHHHHHHHHHcCCCCC---HHHHhhhhhh-hhhhc----
Confidence              999998887765555544444332211111111 122222332222222221111   1110000000 00000    


Q ss_pred             CCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHH-HHHHHhhhhhhhhhcccceeeeeeccccccCCCccccccc
Q 007604          296 STQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMI-PILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPA  374 (596)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  374 (596)
                       .+.....                   +..+.+.+.... ............+.. ...+..       .++    ....
T Consensus       311 -~~~~~~~-------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~----~~~~  358 (505)
T TIGR00898       311 -KKQYSFL-------------------DLFRTPNLRKTTLCLMMLWFTTAFSYYG-LVLDLG-------NLG----GNIY  358 (505)
T ss_pred             -cCCCcHH-------------------HHhCChHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-------ccC----CChH
Confidence             0000000                   000111111111 111111111111100 011111       011    0111


Q ss_pred             ccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCccee
Q 007604          375 SLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL  454 (596)
Q Consensus       375 ~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (596)
                      ....+..+..+++..+..++.||++||           +.+.+++++.+++.+...+..                   ..
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr-----------~~~~~~~~~~~~~~l~~~~~~-------------------~~  408 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRR-----------YTMAASLLLAGVALLLLLFVP-------------------VD  408 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHHHHHHcC-------------------CC
Confidence            122233445555666667777777766           335666666666665554431                   11


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcc
Q 007604          455 TIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNV  534 (596)
Q Consensus       455 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~  534 (596)
                      +.+..+...++.+++.....+..+.+..|.+|++.|++++|+.+....+|+.+++.+.+ +.+                 
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-----------------  470 (505)
T TIGR00898       409 LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-----------------  470 (505)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-----------------
Confidence            22334444556667777777888899999999999999999999999999999999887 322                 


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 007604          535 CHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAE  567 (596)
Q Consensus       535 ~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~  567 (596)
                      .+....++++++..++..++.+ +.+++++++.
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l  502 (505)
T TIGR00898       471 KWLFLPLVLFGGLALLAGILTL-FLPETKGVPL  502 (505)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCC
Confidence            1123356666666666555443 3455555443

>TIGR00897 2A0118 polyol permease family

Probab=99.91  E-value=5e-21  Score=203.98  Aligned_cols=390  Identities=14%  Similarity=0.011  Sum_probs=238.9

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHH
Q 007604           28 KRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAF  107 (596)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~  107 (596)
                      |.+.||+.....+..++..++.+....+++.++ +++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~   85 (402)
T TIGR00897         8 KIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGL   85 (402)
T ss_pred             HcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHH
Confidence            345667888888888888888777778888888 56899999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhh
Q 007604          108 FFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHK  187 (596)
Q Consensus       108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  187 (596)
                      .+..++.+++..... .                   ..+...+++.|++.|+|.+...+...+.+.+.+|+++      |
T Consensus        86 ~~~~~~~~~~~~~~~-~-------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~  139 (402)
T TIGR00897        86 LLWCVGHAAFIVFGL-G-------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------L  139 (402)
T ss_pred             HHHHHHHHHHHHHhc-c-------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------H
Confidence            998888765532110 0                   0156677888999999988887888888899999876      9


Q ss_pred             hhhHHHHHHHHHHHH-HHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHh
Q 007604          188 LSFFNWWMFSIFFGT-LLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRK  266 (596)
Q Consensus       188 ~~~~~~~~~~~~ig~-~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (596)
                      +++.++.+.+.++|. .++|.+++++.+..||+..+|.......+..+..+...++.++  ++++. +            
T Consensus       140 g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~------------  204 (402)
T TIGR00897       140 SSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT--PQHMQ-T------------  204 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC--ccccc-C------------
Confidence            999999999999996 5889888998888887766665544333333222222222110  10000 0            


Q ss_pred             cCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHH-hHHHHHHHhhhhhh
Q 007604          267 RNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQML-AMIPILVATFVPST  345 (596)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l-~~~~~~~~~~~~~~  345 (596)
                           +++..+..                  +..+                     .+.+.|.+. .....++....++.
T Consensus       205 -----~~~~~~~~------------------~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~  240 (402)
T TIGR00897       205 -----REKFSELG------------------KAAT---------------------ILFTNPNVLLGGMVRIINTIGLFG  240 (402)
T ss_pred             -----CcchhhHH------------------HHHH---------------------HHHcChhHHHHHHHHHHHHHHHHH
Confidence                 00000000                  0000                     000111111 11111122222222


Q ss_pred             hhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHH
Q 007604          346 MLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIII  425 (596)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~  425 (596)
                      .....+.+ ..+ ...+       ....+.......++.+++.++.+++.||++||+        ..  +..+.+..+++
T Consensus       241 ~~~~~p~~-~~~-~g~s-------~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~--------~~--~~~~~l~~~~~  301 (402)
T TIGR00897       241 FAVFLPMF-VAE-LGFS-------TSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN--------TV--RWFGGVGCGIF  301 (402)
T ss_pred             HHHHHHHH-HHH-cCCC-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--------HH--HHHHHHHHHHH
Confidence            22222222 111 1111       111223334456677788888888887777652        11  11222223332


Q ss_pred             HHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHH
Q 007604          426 MVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGN  505 (596)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~  505 (596)
                      .+........                ...+.+..++..++.|++.....+. .....+.. ++.||+++|+.+....+|+
T Consensus       302 ~~~l~~~~~~----------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~  363 (402)
T TIGR00897       302 TLALYYIPQH----------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSA  363 (402)
T ss_pred             HHHHHHHHHc----------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHH
Confidence            2222211100                0113344455667777777665443 44555554 4689999999999999999


Q ss_pred             HHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 007604          506 FLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLV  557 (596)
Q Consensus       506 ~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~  557 (596)
                      .++|.+.+.+.+..                ++...+++.+++.+++.++..+
T Consensus       364 ~~gp~i~g~l~~~~----------------g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       364 FLAPAIAVLFIGFF----------------GAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHhhc----------------chHHHHHHHHHHHHHHHHHHHH
Confidence            99999999887532                2345677777776666655544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.91  E-value=1.9e-21  Score=205.80  Aligned_cols=171  Identities=12%  Similarity=0.062  Sum_probs=148.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +.++.+.+..+......+...+.+|. +.+++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++.++..+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            45677777777777777777777765 5668999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.+++++++                        +.+.+++.|++.|++.+...+....++.|++|+++      |+++++
T Consensus        81 ~~~l~~~~~------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  130 (382)
T PRK10091         81 GNAMFTLSS------------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVA  130 (382)
T ss_pred             HHHHHHHhC------------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHH
Confidence            999888774                        78889999999999999988888889999998875      899999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHH
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAI  235 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  235 (596)
                      ....+..+|..++|.+++++.+..|||++|++.++..++..+.
T Consensus       131 ~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091        131 GMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988899999999888765444433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.91  E-value=2.4e-21  Score=204.91  Aligned_cols=155  Identities=13%  Similarity=0.153  Sum_probs=137.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |.++.+++..++..+....+...+|.|++ ++|.+..+.|++.+.+.++..+++++.|+++||+ |||+++.++.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~   83 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA   83 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            56888888888888888888888888877 6899999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.+.++.+.                        +.+.+++.|++.|++.+...|...+.+.+..++++      |+++++
T Consensus        84 ~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  133 (381)
T PRK03633         84 GCAGLGLMV------------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLA  133 (381)
T ss_pred             HHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence            888887764                        77888999999999999988888888888888765      999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccch
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWA  219 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~  219 (596)
                      +++...++|..+||.+++.+.+...++
T Consensus       134 ~~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        134 AYMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccch
Confidence            999999999999999999887654333

>PRK09952 shikimate transporter; Provisional

Probab=99.91  E-value=3.8e-21  Score=207.17  Aligned_cols=175  Identities=10%  Similarity=0.039  Sum_probs=130.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCChhhhhhHH-----HHHHHHHHHhhhhhHHHhhhhcchhHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKL--HHGTVKSANNV-----TNWGGTIWVTPIFGAGVAEAYLGRYWTFV  104 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g~~~~~~~~~~-----~~~~~~~~~~~~~~G~laD~~~Grk~~~~  104 (596)
                      +|..+..++..+++.+.+.......+.++.+++  +.++. .+++.     ++..++..++.++.|+++||+ |||+++.
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~   98 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHH
Confidence            455666777777777777655555555666555  66666 45443     234456678888899999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhh
Q 007604          105 IAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEK  184 (596)
Q Consensus       105 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  184 (596)
                      ++.+++.++.++++++++....                .......+++.|+++|++.|+..|....++.|++|+++    
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~----  158 (438)
T PRK09952         99 LTVWMMGIATALIGLLPSFSTI----------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK----  158 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHH----------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC----
Confidence            9999999999999887421100                00012357889999999999999999999999999986    


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhhhhhhcc--------ccccchhhhHHHHHHHH
Q 007604          185 AHKLSFFNWWMFSIFFGTLLGNTVLVYIQ--------DDVGWALGYGLPALGLA  230 (596)
Q Consensus       185 ~~r~~~~~~~~~~~~ig~~l~~~~~~~l~--------~~~g~~~~f~~~~~~~~  230 (596)
                        |+...+..+.+..+|..++..+...+.        ..+|||.+|++.++..+
T Consensus       159 --rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        159 --KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             --CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence              999999888888888888876655543        35799999998776543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.91  E-value=6.3e-22  Score=215.04  Aligned_cols=377  Identities=12%  Similarity=0.082  Sum_probs=225.8

Q ss_pred             hcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcccccc
Q 007604           63 KLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKA  142 (596)
Q Consensus        63 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (596)
                      +++++..+.|.+.+.+.+++.++++++|+++||+ |||+++.++.++..++.+++..+..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6899999999999999999999999999999998 9999999999988888877654421                    


Q ss_pred             ccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccc-cchhh
Q 007604          143 STLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDV-GWALG  221 (596)
Q Consensus       143 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~-g~~~~  221 (596)
                        .+...+++.|+++|++.+...|....+++|++|+++      |+++.++.+.+.++|.+++|.+++++.+.. |||++
T Consensus       129 --~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~  200 (465)
T TIGR00894       129 --GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI  200 (465)
T ss_pred             --cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence              145678889999999999999999999999999886      999999999999999999999999998874 99999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchh
Q 007604          222 YGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLR  301 (596)
Q Consensus       222 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (596)
                      |++.++..++..+..+...++.++++++.+..+.  +.+                     ++.  .+....  +.++.  
T Consensus       201 f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~i---------------------~~~--~~~~~~--~~~~~--  251 (465)
T TIGR00894       201 FYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK--KYI---------------------NSS--LQGQKG--STRQS--  251 (465)
T ss_pred             hhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH--HHH---------------------Hhh--cccccC--CCCCC--
Confidence            9988776544444333333222211111111000  000                     000  000000  00000  


Q ss_pred             hhhhhhhhcCCCCCcccccchhhhhhhhHHh-HHHHHHHhhhhhhhhhcccceeeeeeccccccCCCcccccccccccch
Q 007604          302 FFNKAAVKTGATNPWILCSVSQVEETTQMLA-MIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFV  380 (596)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  380 (596)
                                  .+|     .++...+.+.. .+..++....++....+.+.++.. ..+.+       ....+......
T Consensus       252 ------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~-~~g~s-------~~~~g~~~~~~  306 (465)
T TIGR00894       252 ------------LPI-----KAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISW-VLRVS-------GKENGLLSSLP  306 (465)
T ss_pred             ------------CCH-----HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcC-------hHHhHHHHHHH
Confidence                        000     01111122221 122222222333333333333322 11111       11234445566


Q ss_pred             hHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHH
Q 007604          381 TLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIML  460 (596)
Q Consensus       381 ~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  460 (596)
                      .+..+++.++.+++.|++.+|.....   ...+++..+..+...+...+.....                  ..+....+
T Consensus       307 ~~~~~i~~~~~g~l~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~  365 (465)
T TIGR00894       307 YLFAWLCSIFAGYLADFLKSSKTLSL---TAARKIFNGIGGLGPGIFAYALPYL------------------SAAFYLTI  365 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHc------------------CCchHHHH
Confidence            77778888889999988876632110   1111122222211111111111100                  11223333


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHH
Q 007604          461 PQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYY  540 (596)
Q Consensus       461 ~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~  540 (596)
                      ..+.+.+.+.+...+..+....+.+|+ .+|.++|+.++.+.++..+++.+.+.+.+..      +|       +.+...
T Consensus       366 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~------~~-------~~~~~~  431 (465)
T TIGR00894       366 IILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQD------SK-------NVWLIV  431 (465)
T ss_pred             HHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCC------Cc-------hHHHHH
Confidence            344444444444555555566677765 8999999999999999999999988765311      01       224556


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007604          541 YAFFAILNVLNFVFFLV  557 (596)
Q Consensus       541 f~~~~~~~~v~~~~~~~  557 (596)
                      |++.++..+++.+++..
T Consensus       432 f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       432 FLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHHHHHHHHHHeee
Confidence            77767666666555543

>PRK03699 putative transporter; Provisional

Probab=99.91  E-value=3.5e-21  Score=204.65  Aligned_cols=350  Identities=11%  Similarity=0.097  Sum_probs=223.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH
Q 007604           30 GGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF  109 (596)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  109 (596)
                      +++|..+...+..++...........++. +.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            44566666666666666655545444554 5678999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      ..++.++++++.                        +...+++.|+++|++.|...+...+++.|.+|+++      |+.
T Consensus        82 ~~i~~~l~~~~~------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~  131 (394)
T PRK03699         82 MILAVAGLMFSH------------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGS  131 (394)
T ss_pred             HHHHHHHHHHcc------------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHH
Confidence            999888887753                        67788899999999999999999999999998875      999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhcc-ccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcC
Q 007604          190 FFNWWMFSIFFGTLLGNTVLVYIQ-DDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRN  268 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l~~~~~~~l~-~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (596)
                      ..+..+....+|+.++|.+.+++. +..|||++|.+.++..++..+..+..+  .++.++ +++              + 
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~~--~p~~~~-~~~--------------~-  193 (394)
T PRK03699        132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLFSE--FPALGK-HAP--------------K-  193 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhcC--Cccccc-cCc--------------c-
Confidence            998888888899999998888765 457999999887765444433332211  111000 000              0 


Q ss_pred             CCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhh
Q 007604          269 VPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLA  348 (596)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~  348 (596)
                         +.               +..    .+                ..|         +.+.....+..++.....+....
T Consensus       194 ---~~---------------~~~----~~----------------~~~---------~~~~~~~~~~~~~~~~~~~~~~~  226 (394)
T PRK03699        194 ---AD---------------KPV----AK----------------EKW---------GIGVLFLAIAALLYILAQLTFIS  226 (394)
T ss_pred             ---cc---------------Ccc----cc----------------ccC---------ChHHHHHHHHHHHHHHHHHHHHH
Confidence               00               000    00                000         01111111111111122222222


Q ss_pred             cccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 007604          349 QINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVI  428 (596)
Q Consensus       349 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~  428 (596)
                      +.+.+...+ .+.+       ....+.......+...++.++.+++.||+.+|           +.+..+..+.++.+..
T Consensus       227 ~~p~~l~~~-~g~s-------~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----------~~l~~~~~~~~~~~~~  287 (394)
T PRK03699        227 WVPEYAQKK-FGMS-------LEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ-----------RILTVLAGLALVLMYL  287 (394)
T ss_pred             HHHHHHHHH-cCCC-------hHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh-----------hHHHHHHHHHHHHHHH
Confidence            223222111 1111       11123333444556677777777777766655           2233333333333333


Q ss_pred             HHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHH
Q 007604          429 ASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLS  508 (596)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg  508 (596)
                      ....                     .+.+++.+..++.|++.+...+...++..+..|++ ++...|.......+|..++
T Consensus       288 ~~~~---------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~  345 (394)
T PRK03699        288 FVNT---------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLT  345 (394)
T ss_pred             HHHc---------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHH
Confidence            3221                     13334444556777777777777777877777744 5777888888889999999


Q ss_pred             hHHHhhhhc
Q 007604          509 SFLLSTVSD  517 (596)
Q Consensus       509 ~~~~~~i~~  517 (596)
                      +.+.+.+.+
T Consensus       346 p~~~G~l~~  354 (394)
T PRK03699        346 FVVTSPIVA  354 (394)
T ss_pred             HHHHHHHHH
Confidence            999998875

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=9.2e-22  Score=208.07  Aligned_cols=382  Identities=9%  Similarity=0.098  Sum_probs=228.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      ++.+...++..+...+.... ......++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~   93 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAA-MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFS   93 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHH
Confidence            34444444444444444443 34444566678999999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++.++...+.                        +...+++.+++.|++.+...+...+++.|.+|+++      |+++.
T Consensus        94 ~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~  143 (398)
T TIGR00895        94 VFTLLCALAT------------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAV  143 (398)
T ss_pred             HHHHHHHHcc------------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhH
Confidence            8887777653                        67778889999999999999999999999999876      99999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCC
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPL  271 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (596)
                      ++.+....+|..+++.+++++.+..||+..|++.++..++..+..+...++.++...++++ ++..+..... ...... 
T Consensus       144 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~-  220 (398)
T TIGR00895       144 GLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIVNAI-APQMQA-  220 (398)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCH-HHHHHHHHHH-HHhccc-
Confidence            9999999999999999999999889999999888644433333333322221111000011 0000000000 000000 


Q ss_pred             CCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhccc
Q 007604          272 PIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQIN  351 (596)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~  351 (596)
                      +. ..           +....+...++..   +          .++.... ....++.....+...+....++......+
T Consensus       221 ~~-~~-----------~~~~~~~~~~~~~---~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (398)
T TIGR00895       221 EA-QS-----------ALPEQKATQGTKR---S----------VFKALFQ-GKTARITVLLWLLYFMLLVGVYFLTNWLP  274 (398)
T ss_pred             cc-cc-----------cccccccccchhh---H----------HHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 00           0000000000000   0          0000000 00001111111111111122211111111


Q ss_pred             ceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 007604          352 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASF  431 (596)
Q Consensus       352 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~  431 (596)
                       ++... ...+       ....+.......++.+++.++..++.||+++|            .+..+..+.++.......
T Consensus       275 -~~~~~-~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~  333 (398)
T TIGR00895       275 -KLMVE-LGFS-------LSLAATGGALFNFGGVIGSIIFGWLADRLGPR------------VTALLLLLGAVFAVLVGS  333 (398)
T ss_pred             -HHHHH-cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH------------HHHHHHHHHHHHHHHHHH
Confidence             11110 0111       11123344455666677777777766666544            133333333333222222


Q ss_pred             HhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHH
Q 007604          432 TERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFL  511 (596)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~  511 (596)
                      ..                    .+.+......++.+++.+...+...+++.+.+|++.||+++|+.+....+|..+|+.+
T Consensus       334 ~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  393 (398)
T TIGR00895       334 TL--------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPIL  393 (398)
T ss_pred             Hh--------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11                    1334455666888999999999999999999999999999999999999999999998


Q ss_pred             Hhhh
Q 007604          512 LSTV  515 (596)
Q Consensus       512 ~~~i  515 (596)
                      .+.+
T Consensus       394 ~G~l  397 (398)
T TIGR00895       394 AGYL  397 (398)
T ss_pred             HHhc
Confidence            8764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=2.8e-21  Score=205.26  Aligned_cols=166  Identities=14%  Similarity=0.124  Sum_probs=136.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |.++.+++..++..++...+...++.. .+++|.++.+.+++.+.+.+...++.+++|+++||+ |||++++++.+++.+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence            345666777777777655444444444 568899999999999999999999999999999998 999999999999988


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.+++.++.                        +.   ++.|+++|++.+...|+..+++.|.+|+++      |+++.+
T Consensus        81 ~~~~~~~~~------------------------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~  127 (393)
T PRK11195         81 GCLLMLFGI------------------------HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANG  127 (393)
T ss_pred             HHHHHHHHH------------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence            887776543                        32   678999999999999999999999999886      999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHH
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIA  234 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  234 (596)
                      +.+...++|.++||.++|++.+. .|+..+.+.+...+++.+
T Consensus       128 ~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~  168 (393)
T PRK11195        128 WMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAAL  168 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998874 477777666554444433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.90  E-value=9e-21  Score=201.37  Aligned_cols=170  Identities=15%  Similarity=0.138  Sum_probs=141.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      .+|.++...+...+..+........+|. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++..+.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            3455666666666666665545555554 4578999999999999999999999999999999998 9999999999998


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++.+++..+.                        +...+++.|++.|++.+...+....+..|.+++++      |+.+
T Consensus        84 ~~~~~~~~~~~------------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  133 (394)
T PRK11652         84 ILGTLVALFAH------------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHA  133 (394)
T ss_pred             HHHHHHHHHHc------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHH
Confidence            88888877653                        67788899999999998888888888899888765      8889


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHH
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIA  232 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~  232 (596)
                      .++.+.+..+|..++|.+++++.+..|||++|++.++..++.
T Consensus       134 ~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~  175 (394)
T PRK11652        134 NSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV  175 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            999999999999999999999988889999999876654433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.89  E-value=1.4e-20  Score=199.85  Aligned_cols=176  Identities=11%  Similarity=0.146  Sum_probs=125.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHH-HHHHhhhhhHHHhhhhcchhHHHH-HHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGG-TIWVTPIFGAGVAEAYLGRYWTFV-IAFFFY  110 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grk~~~~-~~~~~~  110 (596)
                      ...+..++..++..++.....+.++.|+.+++|.+.++.|++.+...+ +..++++.+|+ +||+ ||||.++ .+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~   92 (393)
T PRK15011         15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLG   92 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHH
Confidence            345566666778888888888999999999999999999999876544 66666666666 9998 9988754 445555


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++..+.+++.                        +...+++.+.+.+...+...|....+..|..++++    +..+..
T Consensus        93 ~~~~~~~~~~~------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  144 (393)
T PRK15011         93 VLACTLFAWNR------------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG----REAVMF  144 (393)
T ss_pred             HHHHHHHHHhh------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc----chHHHH
Confidence            56666555553                        45555444444333334567778888888776553    012344


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHh
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      .++.+...++|.++||.+++++.+.+|||..|++.++..++..+..+.
T Consensus       145 ~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        145 SSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            578888999999999999999998899999998887655544444333

>PRK15075 citrate-proton symporter; Provisional

Probab=99.89  E-value=1.1e-20  Score=203.52  Aligned_cols=171  Identities=11%  Similarity=0.062  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHH-HHHH-----HHHHHhhhhhHHHhhhhcchhHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNV-TNWG-----GTIWVTPIFGAGVAEAYLGRYWTFVIA  106 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~-~~~~-----~~~~~~~~~~G~laD~~~Grk~~~~~~  106 (596)
                      +....+++..++..+....+ ......+.++++.++.+.+... +...     ++..+++++.|+++||+ |||++++.+
T Consensus        15 ~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~   92 (434)
T PRK15075         15 RAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVT   92 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHH
Confidence            45555666666666665544 4555577888998887765433 2222     22246789999999998 999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhh
Q 007604          107 FFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAH  186 (596)
Q Consensus       107 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  186 (596)
                      ..+..++.++++++.+...+                .......++++|+++|++.+...+....+++|++|+++      
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------  150 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATI----------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------  150 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHH----------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------
Confidence            99999999998876421100                00001246889999999999999999999999999986      


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhc--------cccccchhhhHHHHH
Q 007604          187 KLSFFNWWMFSIFFGTLLGNTVLVYI--------QDDVGWALGYGLPAL  227 (596)
Q Consensus       187 r~~~~~~~~~~~~ig~~l~~~~~~~l--------~~~~g~~~~f~~~~~  227 (596)
                      |+++.++.....++|..+++.+++.+        .+.+|||++|++.++
T Consensus       151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            99999998888888887777666654        246899999987654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.89  E-value=2.1e-20  Score=199.78  Aligned_cols=147  Identities=9%  Similarity=0.108  Sum_probs=130.3

Q ss_pred             HhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccc
Q 007604           60 LTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDC  139 (596)
Q Consensus        60 l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (596)
                      +.+++|.+..+.++.++++.++..++++++|+++||+ |||++++++.++..++.+++..+.                  
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------  102 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------  102 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence            5678999999999999999999999999999999998 999999999999999998888764                  


Q ss_pred             cccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccch
Q 007604          140 RKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWA  219 (596)
Q Consensus       140 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~  219 (596)
                            +...++++|+++|++.+...+....++.|.+|+++      |++..++.....++|..+||.+++++.+..|||
T Consensus       103 ------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~  170 (413)
T PRK15403        103 ------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK  170 (413)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence                  77889999999999998767777888999999875      899999999999999999999999998888999


Q ss_pred             hhhHHHHHHHHHHHHHHH
Q 007604          220 LGYGLPALGLAIAIAIFL  237 (596)
Q Consensus       220 ~~f~~~~~~~~~~~~~~~  237 (596)
                      +.|++.++..+++.+..+
T Consensus       171 ~~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        171 VLFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999988776555554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=5.2e-21  Score=205.06  Aligned_cols=391  Identities=8%  Similarity=-0.040  Sum_probs=227.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +..+.+.+..++..+++..+.++++.|+++++|+++.+.|.+.+.+.++..+++++.|+++||+ |||++++++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4566666677777777777899999999999999999999999999999999999999999998 999999887666554


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +..........+.                    -......+.++.++..+...+...+...++.++..    ++++..++
T Consensus        89 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g  144 (420)
T PRK09528         89 LFGPFFIYVFAPL--------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEYG  144 (420)
T ss_pred             HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccch
Confidence            4332211100000                    00001112222233333222222222333322111    13677778


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCC
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLP  272 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (596)
                      ..+...++|..++|.+++++.+ .+|+.+|++.++..++.++..+..+++.++++..++.                   +
T Consensus       145 ~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~  204 (420)
T PRK09528        145 RARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA-------------------L  204 (420)
T ss_pred             hhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc-------------------h
Confidence            8888889999999999998876 5899999887766555554444433221111000000                   0


Q ss_pred             CCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHH-HHhhhhhhhhhccc
Q 007604          273 IDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPIL-VATFVPSTMLAQIN  351 (596)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~-~~~~~~~~~~~~~~  351 (596)
                      +               ...   + +.  ..-+..                ...+.+.+....... .....+.....+.+
T Consensus       205 ~---------------~~~---~-~~--~~~~~~----------------~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~  247 (420)
T PRK09528        205 G---------------ANA---S-AV--SLKDAL----------------ALLKLPKFWFLVLYVIGVACFYDVFDQQFP  247 (420)
T ss_pred             h---------------ccc---c-cc--cHHHHH----------------HHccCCCeEeehHHHHHHHHHHHHHHHHHH
Confidence            0               000   0 00  000000                000011111111111 11122222222223


Q ss_pred             ceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 007604          352 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASF  431 (596)
Q Consensus       352 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~  431 (596)
                      .+......  +...+   ....+....+..+...++.++.+++.||+++|           +.+..+.++.+++.+..++
T Consensus       248 ~~~~~~~~--~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l~~~~~~l~~~  311 (420)
T PRK09528        248 NFFASFFA--TPEQG---TRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTIMAVRIIGSGF  311 (420)
T ss_pred             HHHHHHHh--ccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHh
Confidence            32221100  11110   01112334445556667777888877777766           3356666666666666554


Q ss_pred             HhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHH-HHHHHhHHHHHHhH
Q 007604          432 TERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY-SMTTLGVGNFLSSF  510 (596)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~~lg~~  510 (596)
                      .                     .++++++...++.+++.....+....++.+..|++.+++..+. +++...+|..+++.
T Consensus       312 ~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~  370 (420)
T PRK09528        312 A---------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST  370 (420)
T ss_pred             c---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence            3                     2445566667788888888778888999999999999988766 67788899999999


Q ss_pred             HHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 007604          511 LLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVV  558 (596)
Q Consensus       511 ~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~  558 (596)
                      +.+.+.+..                ++...|+..+++.++..++.+..
T Consensus       371 ~~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~~~  402 (420)
T PRK09528        371 LAGNLYDSI----------------GFQGTYLILGGIVLLFTLISVFT  402 (420)
T ss_pred             HHHHHHHhh----------------CchHHHHHHHHHHHHHHHHHHHH
Confidence            999887522                24567777777766666555544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=3.3e-20  Score=196.30  Aligned_cols=395  Identities=11%  Similarity=0.084  Sum_probs=234.8

Q ss_pred             hhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHH
Q 007604           72 ANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFF  151 (596)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (596)
                      +.+++++.+|.++|+.++|+++||+ |||..++++.++..++.++..++...+                     ...++.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~---------------------~~e~li  120 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP---------------------SFEMLI  120 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh---------------------hHHHHH
Confidence            4667889999999999999999999 999999999999888888887775322                     788899


Q ss_pred             HHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhh--hccccccchhhhHHHHHHH
Q 007604          152 AALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLV--YIQDDVGWALGYGLPALGL  229 (596)
Q Consensus       152 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~--~l~~~~g~~~~f~~~~~~~  229 (596)
                      ++|++.|+..|......+.++.|..|++.      ||........+..+|..++..++.  .+.....|.+.+.+.++..
T Consensus       121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~  194 (485)
T KOG0569|consen  121 LGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA  194 (485)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999997      999999999999999999965542  3445566999888888776


Q ss_pred             HHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhh
Q 007604          230 AIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVK  309 (596)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (596)
                      ++.++...++++.-+.--.+++..+++.+.+    +..+  ..++.....+....+..+....+   .+.....|     
T Consensus       195 ~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl----~~y~--G~~~~~~~~e~~~~e~~~~~~~~---~~~~sl~~-----  260 (485)
T KOG0569|consen  195 LLQLALLPFLPESPKYLLIKKGDEEEARKAL----KFYR--GKEDVEAEIEEMLREIEEEELEK---KKQISLRQ-----  260 (485)
T ss_pred             HHHHHHHhcCCCCcchHHHHcCCHHHHHHHH----HHHh--CCCcchhHHHHHHHHHHHhcccc---ccCCcHHH-----
Confidence            6666655544322111100011111221111    1111  01111111111110000000000   00000000     


Q ss_pred             cCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCccccc-ccccccchhHHHHHHH
Q 007604          310 TGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIP-PASLTGFVTLSMLVCV  388 (596)
Q Consensus       310 ~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~  388 (596)
                              . .+++ ..++.+...+.+.+.+..-.......++....      .+.|  +... ....+....+..++..
T Consensus       261 --------~-~~~~-~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~------~~aG--~~~~~a~~an~~~g~v~~~~t  322 (485)
T KOG0569|consen  261 --------L-LKNP-TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIF------KTAG--FTPEEAQYANLGIGIVNLLST  322 (485)
T ss_pred             --------H-hcCc-chhHHHHHHHHHHHHHHhcCcceeHHHHHHHH------HHcC--CCHHHHHHHHHHHHHHHHHHH
Confidence                    0 0000 11222222222212111111111111111111      1111  1111 1222233344445555


Q ss_pred             HHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCccee-hhHH-H-HHHHHH
Q 007604          389 VLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL-TIFI-M-LPQFVL  465 (596)
Q Consensus       389 ~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l-i~~~~l  465 (596)
                      .+...++||++||           ..+.+++.++.+..+++.....-..               .. ++.+ . +...++
T Consensus       323 ~~~~~lid~~gRR-----------pLll~~~~~~~~~~~~~~~~~~l~~---------------~~~~~~~y~~i~~~~~  376 (485)
T KOG0569|consen  323 LVSPFLIDRLGRR-----------PLLLISLSLMAVALLLMSIALFLSN---------------SFGSWLSYLCIAAIFL  376 (485)
T ss_pred             HHHHHHHHhcCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHH---------------HhhhHHHHHHHHHHHH
Confidence            5666677778877           3355566666655544443321000               01 2222 1 233333


Q ss_pred             H-HHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHH
Q 007604          466 M-GTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFF  544 (596)
Q Consensus       466 ~-g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~  544 (596)
                      + .....+..|..+-+.+|.+|++.|..++++..+.+++.+++-....+.+....+                 +++|..+
T Consensus       377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF  439 (485)
T KOG0569|consen  377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILF  439 (485)
T ss_pred             HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHH
Confidence            3 334555589999999999999999999999999999999999999988875431                 2568888


Q ss_pred             HHHHHHHHHHHHHHhhccccccCCC
Q 007604          545 AILNVLNFVFFLVVAKFYVYKAEVS  569 (596)
Q Consensus       545 ~~~~~v~~~~~~~~~~~~~~~~~~~  569 (596)
                      .+..++..+..+...+++|+|+..+
T Consensus       440 ~i~~~~~~i~~~~~lPETkgr~~~e  464 (485)
T KOG0569|consen  440 VIPLAIFLIYLYRYLPETKGRTPYE  464 (485)
T ss_pred             HHHHHHHHHHHHHhCcccCCCCHHH
Confidence            8888888888888889988887643

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.89  E-value=8.2e-23  Score=215.31  Aligned_cols=367  Identities=34%  Similarity=0.578  Sum_probs=237.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCC
Q 007604          100 YWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEF  179 (596)
Q Consensus       100 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~  179 (596)
                      .|+++++.+++++|.+++.++...+..               +++.+...+++++.++++|.|+..|+..++.+||++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~---------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~   65 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL---------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED   65 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh---------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc
Confidence            478999999999999998887632211               22335678999999999999999999999999999987


Q ss_pred             ChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceecc-CCCCChhHH-HH
Q 007604          180 EPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHK-KPAGSPFTR-MA  257 (596)
Q Consensus       180 ~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~  257 (596)
                      ++   .+|.++|+++|+++|+|+.+++.+.+++.+..||.+.|.++++..+++++.++..+++++++ ++.+++..+ ..
T Consensus        66 ~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~  142 (372)
T PF00854_consen   66 DD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIK  142 (372)
T ss_dssp             TT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SH
T ss_pred             ch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHH
Confidence            32   36999999999999999999999999999999999999999999999999999998888776 666676666 34


Q ss_pred             HHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCccc-ccchhhhhhhhHHhHHHH
Q 007604          258 KVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWIL-CSVSQVEETTQMLAMIPI  336 (596)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~l~~~~~  336 (596)
                      .+.....+++....+....+......... +..   .  ...................|.. +..++++..+.+.+.++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~  216 (372)
T PF00854_consen  143 LVLVAAFKKRKLAVPKGSSWLDWALFQYS-ERS---I--FGIIVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPI  216 (372)
T ss_dssp             HHHHHHHHHHCCCH-HHHHHHHHHHHHHC-CCC---C--CCCCCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHC
T ss_pred             HHHHHHHHHhhcccccchHHHHHhhhhhh-hhh---h--hhhhhhccchhhhhhhhhhcccCCccceeeeeeeeeecccc
Confidence            44445555554433321222222111100 000   0  0000001100000000001110 123445556666677776


Q ss_pred             HHHhhhhhhhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHH
Q 007604          337 LVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMG  416 (596)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~  416 (596)
                      +.+...+.....+.......+...++..+++.+.++++.+.+++++.+++..|+.+++++++.|+. +.   +++..++.
T Consensus       217 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~-~~---~~~~~k~~  292 (372)
T PF00854_consen  217 FLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRG-IQ---PSPPQKFG  292 (372)
T ss_dssp             CCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHH
T ss_pred             CeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhc-cc---chhhhhhh
Confidence            666666667767766666777767766666337899999999999999999999999999999842 22   68889999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHH
Q 007604          417 IGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY  496 (596)
Q Consensus       417 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~  496 (596)
                      +|+++..++++..+..+.+|....+..+        ..+.+|.++.+++..++|.+..+.+.+...|.+|++..+.++|+
T Consensus       293 ~G~~~~~~~~~~~~~v~~~r~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~  364 (372)
T PF00854_consen  293 IGMVFAILAMFVAAIVEIRRLCYAQPCG--------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGI  364 (372)
T ss_dssp             HH-HHHHHHHHTTTHHHH---HH----T--------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccccC--------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHH
Confidence            9999999999888877765543333333        23447777999999999999999999988888888888888888


Q ss_pred             HHHHHh
Q 007604          497 SMTTLG  502 (596)
Q Consensus       497 ~~~~~~  502 (596)
                      ++....
T Consensus       365 ~~~~~~  370 (372)
T PF00854_consen  365 WFALSA  370 (372)
T ss_dssp             HHHHH-
T ss_pred             HHHHhc
Confidence            876553

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.89  E-value=2.8e-20  Score=202.13  Aligned_cols=359  Identities=14%  Similarity=0.164  Sum_probs=241.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |.+..+++.+++.+++......-++-++. ++.-|+...+.+..+..+-..+..+++|.++||+ .|||+++.+-++.++
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~   87 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL   87 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence            45556667777777776655555555544 5677899999999999999999999999999999 999999999888776


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      ..+++++.....                   ..+.+.+++..++.|++.+...|+..+++.|.+|+++      ...+.+
T Consensus        88 ~~~~L~~l~~~~-------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~a  142 (524)
T PF05977_consen   88 VALLLAVLAFFG-------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANA  142 (524)
T ss_pred             HHHHHHHHHHhC-------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHH
Confidence            655554432111                   1267788888899999999999999999999999986      999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCC
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLP  272 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (596)
                      +.+...|+...+||.++|.+....|-.++|.+.++..++.+..+...++..+.+   +.+.+...+.++..++.      
T Consensus       143 l~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~~~e~~~~~l~~G~ry------  213 (524)
T PF05977_consen  143 LNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPS---SLPRERFFSALREGLRY------  213 (524)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc---ccchhhhhhhHHHHHHH------
Confidence            999999999999999999998888988999999887776665555444332111   11111111111000000      


Q ss_pred             CCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHH-HHHhhhhhhhhhccc
Q 007604          273 IDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPI-LVATFVPSTMLAQIN  351 (596)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~-~~~~~~~~~~~~~~~  351 (596)
                                                                         +.+.+.+...+.. .++.+....... ..
T Consensus       214 ---------------------------------------------------v~~~~~l~~~l~~~~~~~l~~~a~~a-Ll  241 (524)
T PF05977_consen  214 ---------------------------------------------------VRSSPPLRSVLLRSFLFNLFASAVWA-LL  241 (524)
T ss_pred             ---------------------------------------------------HhcchHHHHHHHHHHHHHHhhhHHHH-hh
Confidence                                                               0011111111111 111111111111 11


Q ss_pred             ceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 007604          352 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASF  431 (596)
Q Consensus       352 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~  431 (596)
                      +.+..+      .++. -...-+.+.+..+++.++++.+..+    +.+|       .+..+.+..+.++.+++++.+++
T Consensus       242 Pl~a~~------~l~~-~a~~yGll~a~~gvGai~Gal~~~~----l~~~-------~~~~~lv~~~~~~~a~~~~~lal  303 (524)
T PF05977_consen  242 PLFARD------VLGG-GASGYGLLLAAFGVGAILGALLLPR----LRRR-------LSSRRLVLLASLLFALALLLLAL  303 (524)
T ss_pred             hHHHHH------HhCC-cHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-------cCcchhhHHHHHHHHHHHHHHhc
Confidence            222111      1110 0111233444455555665555444    4444       23345567777777777777666


Q ss_pred             HhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHH
Q 007604          432 TERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFL  511 (596)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~  511 (596)
                      .                     .+.+..++.+++.|++....++...+.+.+.+|+++||+.++++.+....+..+|..+
T Consensus       304 ~---------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll  362 (524)
T PF05977_consen  304 S---------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLL  362 (524)
T ss_pred             c---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3                     3556667778899999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhcc
Q 007604          512 LSTVSDI  518 (596)
Q Consensus       512 ~~~i~~~  518 (596)
                      .|.+.+.
T Consensus       363 ~G~la~~  369 (524)
T PF05977_consen  363 WGFLADH  369 (524)
T ss_pred             HHHHHHH
Confidence            9998753

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11043 putative transporter; Provisional

Probab=99.89  E-value=2.3e-20  Score=198.70  Aligned_cols=160  Identities=11%  Similarity=0.164  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHH--HhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 007604           48 AYHGISSNLVMY--LTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSG  125 (596)
Q Consensus        48 ~~~~~~~~l~~y--l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~  125 (596)
                      ++++...+.|.+  +.+++|.++.+.+++.+++.++..++.+++|+++||+ |||+++.++..+..++.+++..+.    
T Consensus        18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~----   92 (401)
T PRK11043         18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE----   92 (401)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc----
Confidence            333444444443  6779999999999999999999999999999999998 999999999988888888877653    


Q ss_pred             CCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHh
Q 007604          126 LKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLG  205 (596)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~  205 (596)
                                          +...+++.|++.|++.+...+...+++.|.+|+++      +++.++......++|..++
T Consensus        93 --------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g  146 (401)
T PRK11043         93 --------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALA  146 (401)
T ss_pred             --------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHH
Confidence                                67788899999999988888888899999999875      7888888888889999999


Q ss_pred             hhhhhhccccccchhhhHHHHHHHHHHHHHHHh
Q 007604          206 NTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       206 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      |.+++++.+..|||+.|++.++..++..+..+.
T Consensus       147 ~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        147 PLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999998899999998877665555444333

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=2.8e-20  Score=204.42  Aligned_cols=400  Identities=14%  Similarity=0.143  Sum_probs=238.4

Q ss_pred             hhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhH
Q 007604           69 VKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLG  148 (596)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (596)
                      .+.+++.+...++..++.+++|+++|++ |||++++++.+++.+|.++++++.                        +..
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~------------------------~~~  143 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP------------------------SWY  143 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh------------------------hHH
Confidence            3458999999999999999999999998 999999999999999999999985                        889


Q ss_pred             HHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccc--ccchhhhHHHH
Q 007604          149 TFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDD--VGWALGYGLPA  226 (596)
Q Consensus       149 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~--~g~~~~f~~~~  226 (596)
                      +++++|++.|+|.|+....++.+++|..|++.      |+...+..+...++|..++..+ ++..++  ++||..+++..
T Consensus       144 ~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~-~~~~~~~~~~Wr~~~~~~~  216 (513)
T KOG0254|consen  144 QLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCI-NYGTSKVYAGWRIPLGLAL  216 (513)
T ss_pred             HHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHH-hhhhccCCccHHHHHHHHH
Confidence            99999999999999999999999999999987      9999999999999999999644 444433  48998888877


Q ss_pred             HHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhh
Q 007604          227 LGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKA  306 (596)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (596)
                      +..++..+.+++.. +.++.-.+.....+..+.+......+   ......+..+.......+...               
T Consensus       217 i~~~~~~~~~~~~p-esp~~L~~~g~~~~a~~~l~~l~g~~---~~~~~~~~~~~~~~~~~~~~~---------------  277 (513)
T KOG0254|consen  217 IPAVILALGMLFLP-ESPRWLIEKGRLEEAKRSLKRLRGLS---PEDVEVELELLKIKLLVEAEV---------------  277 (513)
T ss_pred             HHHHHHHHHHHhCC-CChHHHHHcCChHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhhhc---------------
Confidence            76555555433322 11111001111122222221111101   000000000000000000000               


Q ss_pred             hhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccc--eeeeeeccccccCCCcccccccccccchhHHH
Q 007604          307 AVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINT--LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM  384 (596)
Q Consensus       307 ~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  384 (596)
                         ......|.....  ...+|.....+.+..        ++|...  ....+...+-...|  +..+......+..+..
T Consensus       278 ---~~~~~~~~~l~~--~~~~~~~~i~~~l~~--------fqq~tG~~~~~~Y~~~if~~~g--~~~~~~~~~~~~~~v~  342 (513)
T KOG0254|consen  278 ---AEGKASWGELFS--PKVRKRLIIGLLLQL--------FQQLTGINYVFYYSTTIFKSAG--LKSDTFLASIILGVVN  342 (513)
T ss_pred             ---ccccccHHHhcC--cchHHHHHHHHHHHH--------HHHHhCCceEEeehHHHHHhcC--CCCchHHHHHHHHHHH
Confidence               000000000000  011122221121111        222211  11111111112221  1211122233334444


Q ss_pred             HHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHH
Q 007604          385 LVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFV  464 (596)
Q Consensus       385 ~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~  464 (596)
                      +++..+...++||++||           ..+..|...+.+++++.+...........        ......++.++..++
T Consensus       343 ~~~t~~~~~lvd~~gRr-----------~lll~s~~~m~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  403 (513)
T KOG0254|consen  343 FLGTLVATYLVDRFGRR-----------KLLLFGAAGMSICLVILAVVGVFALYYPN--------SSKGAGWLAIVFLCL  403 (513)
T ss_pred             HHHHHHHHHHHHHhccH-----------HHHHHhHHHHHHHHHHHHHHHHHhccCCC--------cccchhHHHHHHHHH
Confidence            45555556778888777           44777888888887776654321100000        001234444455556


Q ss_pred             HHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHH
Q 007604          465 LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFF  544 (596)
Q Consensus       465 l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~  544 (596)
                      +.........|..+.+..|.+|.+.|+.+.++....+++.+++-....+......                +....|..+
T Consensus       404 ~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~----------------~~~~~f~~f  467 (513)
T KOG0254|consen  404 FIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL----------------GIGGTFGYF  467 (513)
T ss_pred             HHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cccchHHHH
Confidence            6666777778888899999999999999999999999999988877666554211                012456666


Q ss_pred             HHHHHHHHH-HHHHHhhccccccCCC
Q 007604          545 AILNVLNFV-FFLVVAKFYVYKAEVS  569 (596)
Q Consensus       545 ~~~~~v~~~-~~~~~~~~~~~~~~~~  569 (596)
                      ++...+... +.+++.+++++++.++
T Consensus       468 ~~~~~~~~~~fv~~~~pETkg~slee  493 (513)
T KOG0254|consen  468 GGICLLSLIIFVFFFVPETKGLTLEE  493 (513)
T ss_pred             HHHHHHHHHHHheEEcccCCCCcHHH
Confidence            666666666 6777778888777643

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.89  E-value=3.9e-20  Score=195.79  Aligned_cols=363  Identities=10%  Similarity=-0.015  Sum_probs=225.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH-HHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF-YLMGM  114 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~-~~i~~  114 (596)
                      +.+.+..++...++-...+++|.|++ ++|.+..+.|++.+.+.+...+++++.|.++||+ ||++.....+.+ ..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            33445555555555556788888886 6899999999999999999999999999999998 985433222111 11111


Q ss_pred             H-HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          115 I-VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       115 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      + .+..++                        +.+.+++.|++++.+.+...|...++..+.  ++      +|++.++.
T Consensus        85 ~~~~~~~~------------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~------~~~~~~g~  132 (382)
T TIGR00902        85 AAFSAGAH------------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--QK------QFGLDYGK  132 (382)
T ss_pred             HHHHHhhh------------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HH------HcCCCccH
Confidence            1 222222                        677888899999999888888888876553  23      38899999


Q ss_pred             HHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCC
Q 007604          194 WMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPI  273 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (596)
                      .....++|.+++|.+++++.+.+|||..|++.++..++.++ .+..+++.++++++++.                    +
T Consensus       133 ~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------------~  191 (382)
T TIGR00902       133 VRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIPPKDAIPED--------------------E  191 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCCCCcccccc--------------------c
Confidence            99999999999999999999999999998876554333222 22222211110000000                    0


Q ss_pred             CchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhH-HHHHHHhhhhhhhhhcccc
Q 007604          274 DPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAM-IPILVATFVPSTMLAQINT  352 (596)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~-~~~~~~~~~~~~~~~~~~~  352 (596)
                      .                    ...+.  .                   .++.+.|++... ...++........+...+.
T Consensus       192 ~--------------------~~~~~--~-------------------~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~  230 (382)
T TIGR00902       192 S--------------------QGDSA--F-------------------IALLKNPMNLRFLAAVCLIQGAHAAYYGFSAI  230 (382)
T ss_pred             c--------------------ccchh--H-------------------HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0                    00000  0                   001111222221 1112222222222222222


Q ss_pred             eeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007604          353 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFT  432 (596)
Q Consensus       353 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~  432 (596)
                      +. .     +....   ....+.......+..++..++.++    +.||       .++.+.+.++.++.++..+..++.
T Consensus       231 ~l-~-----~~g~s---~~~~g~l~~~~~~~~i~~~~~~~~----l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~  290 (382)
T TIGR00902       231 YW-Q-----AAGIS---ASATGLLWGIGVLAEIIIFAFSNK----LFQN-------CSARDLLLISAIACVGRWAIIGAI  290 (382)
T ss_pred             HH-H-----HCCCC---HhHHHHHHHHHHHHHHHHHHHhHH----HHhh-------CCHHHHHHHHHHHHHHHHHHHHhH
Confidence            21 1     11110   111222333344444444444444    4555       344566788888888887776653


Q ss_pred             hhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHH-HHHhHHHHHHhHH
Q 007604          433 ERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSM-TTLGVGNFLSSFL  511 (596)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~lg~~~  511 (596)
                                           .+++.++...++.++..++..+....++.+. |++.|++++++++ ...++|..+++.+
T Consensus       291 ---------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~  348 (382)
T TIGR00902       291 ---------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF  348 (382)
T ss_pred             ---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 2556666677999999999999999999988 9999999999987 5678999999999


Q ss_pred             HhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHH
Q 007604          512 LSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFV  553 (596)
Q Consensus       512 ~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~  553 (596)
                      .|.+.+..                + ...|+..+++.+++.+
T Consensus       349 ~G~l~~~~----------------g-~~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       349 AGFIYPTL----------------G-AGTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHHHHhc----------------c-HHHHHHHHHHHHHHHH
Confidence            99987632                1 2457777777665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.88  E-value=6.3e-20  Score=194.98  Aligned_cols=382  Identities=11%  Similarity=-0.021  Sum_probs=237.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTD-KLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      |.+++ ....+..++....+.+.+...+.+ ++|++.+|.+++.+++.++..++.++.|++.||+ |.|+++.++.++..
T Consensus        34 r~l~~-s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWI-SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            44444 444455566666666666666654 7999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      +.+++.+++....                   ..++..+++.|++.|++ |...+.....+++++|+++      ||++.
T Consensus       112 i~~~~~~~a~~~~-------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~  165 (462)
T PRK15034        112 IPCVWLGIAVQNP-------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSAL  165 (462)
T ss_pred             HHHHHHHHHHccc-------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHH
Confidence            9888888752000                   02788899999999998 6678889999999999986      99999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcc-----c-------------cccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChh
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQ-----D-------------DVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPF  253 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~-----~-------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (596)
                      ++.....++|..+++.+.+.+.     .             ..+|+.++++..+..++..+..++..++.+.   ++...
T Consensus       166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~  242 (462)
T PRK15034        166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASI  242 (462)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCH
Confidence            9987666777766554443321     1             2347777766666555444444443332111   11111


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhH
Q 007604          254 TRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAM  333 (596)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~  333 (596)
                      ++..    ..+|                                                            +.+..+..
T Consensus       243 ~~~~----~vlk------------------------------------------------------------~~~~Wlls  258 (462)
T PRK15034        243 ADQL----PVLQ------------------------------------------------------------RLHLWLLS  258 (462)
T ss_pred             HHHH----HHhC------------------------------------------------------------CCchhHHH
Confidence            1111    0111                                                            11111111


Q ss_pred             HHHHHHhhhhhhhhh-cccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChh
Q 007604          334 IPILVATFVPSTMLA-QINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLL  412 (596)
Q Consensus       334 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~  412 (596)
                      +.+ +.....+..+. ..+.+...+.   +       .........+.++...+..|+.+++.||++++           
T Consensus       259 lly-~~tFG~fvg~s~~lp~~~~~~~---~-------~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~-----------  316 (462)
T PRK15034        259 LLY-LATFGSFIGFSAGFAMLAKTQF---P-------DVNILRLAFFGPFIGAIARSVGGAISDKFGGV-----------  316 (462)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHc---C-------hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch-----------
Confidence            111 11222222222 2222211110   1       01111112334566777889999988888776           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccc-----
Q 007604          413 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPE-----  487 (596)
Q Consensus       413 ~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~-----  487 (596)
                      +.+.+++++++++..........               ....+.+.....++.+.++.++.+-..+-++...+|+     
T Consensus       317 ~vl~~~~i~~~i~~~~~~l~lp~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~  381 (462)
T PRK15034        317 RVTLINFIFMAIFSALLFLTLPG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYR  381 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhc
Confidence            33555555554443222221100               0013444555555555566667777777777777774     


Q ss_pred             ----------------hhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHH
Q 007604          488 ----------------SMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLN  551 (596)
Q Consensus       488 ----------------~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~  551 (596)
                                      +..|..+|+......+|+++-|.+.+...+.+               +++...|+.+.+..+++
T Consensus       382 ~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~---------------g~~~~~~~~~~~~~~~~  446 (462)
T PRK15034        382 VKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT---------------GSPVGAMKVFLIFYIVC  446 (462)
T ss_pred             ccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc---------------CCcHHHHHHHHHHHHHH
Confidence                            25788899999999999999998888776544               34456788888888888


Q ss_pred             HHHHHHHhhc
Q 007604          552 FVFFLVVAKF  561 (596)
Q Consensus       552 ~~~~~~~~~~  561 (596)
                      +++.+.+..|
T Consensus       447 ~~~~w~~y~r  456 (462)
T PRK15034        447 VLLTWLVYGR  456 (462)
T ss_pred             HHHHHHHhcc
Confidence            8887776544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.88  E-value=8.1e-21  Score=204.71  Aligned_cols=151  Identities=10%  Similarity=0.060  Sum_probs=124.6

Q ss_pred             HHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 007604           56 LVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDIN  135 (596)
Q Consensus        56 l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  135 (596)
                      ...++++ +|.++++.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.++++......           
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  115 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT-----------  115 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc-----------
Confidence            3446665 599999999999999999999999999999998 999999999888888877765542100           


Q ss_pred             CccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcc-c
Q 007604          136 SQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQ-D  214 (596)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~-~  214 (596)
                               .+...+++.|++.|++.|...+.....+.|++|+++      |++++++++...++|+.+++.+.+.+. .
T Consensus       116 ---------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       116 ---------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             ---------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence                     145667788999999999999989999999999886      999999999999999999987776543 3


Q ss_pred             cccchhhhHHHHHHHHHHHH
Q 007604          215 DVGWALGYGLPALGLAIAIA  234 (596)
Q Consensus       215 ~~g~~~~f~~~~~~~~~~~~  234 (596)
                      ..+||..|++.++..++..+
T Consensus       181 ~~~w~~~f~~~~~~~~i~~~  200 (438)
T TIGR00712       181 FNDWHAALYFPAICAIIVAL  200 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHH
Confidence            46899999988776555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.88  E-value=2.6e-21  Score=203.04  Aligned_cols=151  Identities=15%  Similarity=0.131  Sum_probs=132.4

Q ss_pred             HHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 007604           54 SNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCND  133 (596)
Q Consensus        54 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  133 (596)
                      .....++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++.            
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------   81 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------   81 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------
Confidence            3444577889999999999999999999999999999999998 999999999999999998888774            


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhh-hhhhhc
Q 007604          134 INSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGN-TVLVYI  212 (596)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~-~~~~~l  212 (596)
                                  +.+.+++.|++.|++.+...+...+++.|.+|+++      |+++.++.+.+.++|..++| .+++.+
T Consensus        82 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~  143 (379)
T TIGR00881        82 ------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGI  143 (379)
T ss_pred             ------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHH
Confidence                        67788899999999999999999999999999886      99999999999999999999 566677


Q ss_pred             cccccchhhhHHHHHHHHHHHHH
Q 007604          213 QDDVGWALGYGLPALGLAIAIAI  235 (596)
Q Consensus       213 ~~~~g~~~~f~~~~~~~~~~~~~  235 (596)
                      .+..+|++.|++.++..++..+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~  166 (379)
T TIGR00881       144 AELYSWHWVFIVPGIIAIIVSLI  166 (379)
T ss_pred             HhcCCchhHHHHHHHHHHHHHHH
Confidence            77789999998877655444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.88  E-value=6.3e-20  Score=195.10  Aligned_cols=389  Identities=10%  Similarity=-0.033  Sum_probs=232.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |.+|.+....++...+.....++++.|+++++|.++.+.+++.+.+.++..+++++.|+++||+ |||+.++.+....++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4567777778888888888889999999999999999999999999999999999999999998 999999987766655


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +..........+..                .......+.+++++.+++.+...+....+..|..++        ++..++
T Consensus        81 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g  136 (396)
T TIGR00882        81 LFAPFFIYVFGPLL----------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYG  136 (396)
T ss_pred             HHHHHHHHHhhhHH----------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccc
Confidence            44332211000000                000223345667888888888888887777664321        445667


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCC
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLP  272 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (596)
                      ......++|.++||.+++.+.+ .+|+.+|++.++..++..+..+...++.++    ++...+.       .+.     +
T Consensus       137 ~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~~~-----~  199 (396)
T TIGR00882       137 KARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPS----SATVANA-------LGA-----N  199 (396)
T ss_pred             hhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCch----hhhhhcc-------ccc-----c
Confidence            7777889999999999888765 699999998876655544433332222111    0000000       000     0


Q ss_pred             CCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhh-hccc
Q 007604          273 IDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTML-AQIN  351 (596)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~-~~~~  351 (596)
                                        .   ...+..+..                   +..+.|.+...+...+.....+... .+.+
T Consensus       200 ------------------~---~~~~~~~~~-------------------~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  239 (396)
T TIGR00882       200 ------------------A---SAFSLKLAL-------------------ELFRQRKFWMFVLYVVGVACVYDVFDQQFA  239 (396)
T ss_pred             ------------------c---CCCCHHHHH-------------------HHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              0   000000000                   0001122222222111111111111 1222


Q ss_pred             ceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 007604          352 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASF  431 (596)
Q Consensus       352 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~  431 (596)
                      .+......  +...+   ....+...+...+...+......++.||+++|           +.+.++.++.++++.....
T Consensus       240 ~y~~~~~~--~~~~~---~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-----------~~l~~~~~l~~l~~~~~~~  303 (396)
T TIGR00882       240 NFFTSFFA--TPQQG---TRVFGYVTTMGELLNALIMFCAPLIINRIGAK-----------NALLIAGTIMSVRIIGSSF  303 (396)
T ss_pred             HHHHHhcc--ccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHHh
Confidence            22211110  00100   00112233444445555556666666666555           3366666666666655443


Q ss_pred             HhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHH-HHHHHhHHHHHHhH
Q 007604          432 TERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY-SMTTLGVGNFLSSF  510 (596)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~~lg~~  510 (596)
                      .                     .+.+++++..++.+++..........+..+..|++.+++..+. ++....+|+.+++.
T Consensus       304 ~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~  362 (396)
T TIGR00882       304 A---------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLST  362 (396)
T ss_pred             c---------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHH
Confidence            2                     2445556667778888777766777788888899999887766 67889999999999


Q ss_pred             HHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHH
Q 007604          511 LLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFL  556 (596)
Q Consensus       511 ~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~  556 (596)
                      +.+.+.+..                ++...|.+.+++.++..++..
T Consensus       363 l~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       363 LAGNMYDSI----------------GFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             hHHHHHHhc----------------ccHHHHHHHHHHHHHHHHHHH
Confidence            999887522                346677777777666555443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.88  E-value=1.1e-19  Score=192.76  Aligned_cols=168  Identities=11%  Similarity=0.093  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMI  115 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  115 (596)
                      .+..+..+....+.......+|. +.+++|.+..+.+++.+.+.++..+++++.|+++||+ |||+.++++.++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~   83 (392)
T PRK10473          6 LCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHH
Confidence            33444444455555545555554 4568999999999999999999999999999999998 999999999999988888


Q ss_pred             HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 007604          116 VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWM  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  195 (596)
                      ++..+.                        +...++++|++.|++.+...+...+++.|.+|+++      |+++.++.+
T Consensus        84 ~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~  133 (392)
T PRK10473         84 LCSLAE------------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLN  133 (392)
T ss_pred             HHHHhC------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence            877653                        56678889999999999989999999999999886      999999999


Q ss_pred             HHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHH
Q 007604          196 FSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAI  235 (596)
Q Consensus       196 ~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  235 (596)
                      ...++|..++|.+++.+.+..||++.|++.++..++..+.
T Consensus       134 ~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~  173 (392)
T PRK10473        134 GITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence            9999999999999988888889999998887655444433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.87  E-value=1.5e-19  Score=193.53  Aligned_cols=393  Identities=12%  Similarity=0.108  Sum_probs=228.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcch-hHHHHHHHHHHHHHHHH
Q 007604           38 VVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGR-YWTFVIAFFFYLMGMIV  116 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-k~~~~~~~~~~~i~~~~  116 (596)
                      +.+..++...++-...++++.|+++++|++..+.|++.+++.++..+++++.|.++||+ || |+++.++.++..++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence            44445555555556679999999999999999999999999999999999999999998 65 77888887777777766


Q ss_pred             HHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCC-------CCChhhhhhhhh
Q 007604          117 LALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFD-------EFEPKEKAHKLS  189 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-------~~~~~~~~~r~~  189 (596)
                      ..+..                        +...+++.|++.+++.+...+...++..+...       ++.     .|.+
T Consensus        86 ~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~-----~~~r  136 (418)
T TIGR00889        86 AAQVT------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDF-----PPIR  136 (418)
T ss_pred             HHHhc------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcC-----CCee
Confidence            66543                        56677788888888877666665554332221       111     1444


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCC-ChhHHHHHHHHHHHHhcC
Q 007604          190 FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAG-SPFTRMAKVIVAAIRKRN  268 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  268 (596)
                      .++      .+|.++||.+++.+.....|. +|++.++..++..+..+. .++.++.++++ ....+.            
T Consensus       137 ~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~------------  196 (418)
T TIGR00889       137 VMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTAKMSIKVM------------  196 (418)
T ss_pred             eeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCccccccCHHHH------------
Confidence            444      478888888888774433344 455555444443333222 22211110000 000000            


Q ss_pred             CCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhH-HHHHHHhhhhhhhh
Q 007604          269 VPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAM-IPILVATFVPSTML  347 (596)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~-~~~~~~~~~~~~~~  347 (596)
                                   .                   ..+.                .+..+.+.+... +..++.........
T Consensus       197 -------------~-------------------~~~~----------------~~~~k~~~~~~~~~~~~~~~~~~~~~~  228 (418)
T TIGR00889       197 -------------L-------------------GLDA----------------FILFKNKRMAIFFFFSMLLGAPLQITN  228 (418)
T ss_pred             -------------h-------------------hhhH----------------HHHhcCCCeeeHHHHHHHHHhHHHHHH
Confidence                         0                   0000                000001111111 11111111111111


Q ss_pred             hcccceeeeeeccccccCCCccc-ccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHH
Q 007604          348 AQINTLFVKQGTTLDRAIGSSFK-IPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIM  426 (596)
Q Consensus       348 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~  426 (596)
                      ...+.+.....  .+.....++. ...+....+..+..++...+.+++.||+++|           +.+.++.++.++++
T Consensus       229 ~~~~~~~~~~g--~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~v~~  295 (418)
T TIGR00889       229 IFGNGFLHEFG--RNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----------KVMLLSLVAWALRF  295 (418)
T ss_pred             HhHHHHHHHhc--ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHH
Confidence            11111111100  0000000000 0113334445555566666777766666655           44777777777766


Q ss_pred             HHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHH-HHHhHHH
Q 007604          427 VIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSM-TTLGVGN  505 (596)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~  505 (596)
                      ........                 ...+.+.+++..++.+++++...+....++.|.+|++.||+++|+.+ ....+|.
T Consensus       296 ~l~~~~~~-----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~  358 (418)
T TIGR00889       296 GFFAYGDP-----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGS  358 (418)
T ss_pred             HHHHHcCc-----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHH
Confidence            55544210                 01123345556788899999988998999999999999999999997 6788999


Q ss_pred             HHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 007604          506 FLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEV  568 (596)
Q Consensus       506 ~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~  568 (596)
                      .+|+.+.+.+.+..+..++          .+++..|.+.+++.++..++++++.++..+..+.
T Consensus       359 ~iGp~l~G~l~~~~g~~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~~  411 (418)
T TIGR00889       359 LLGYILSGVMVEKMFAYGT----------FDWQTMWLFFAGYIAILAVLFMIFFKYSHNAIKV  411 (418)
T ss_pred             HHHHHHHHHHHHHhccccC----------CchHHHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            9999999998764421110          1356678888888787777777777655444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=1.7e-19  Score=190.14  Aligned_cols=154  Identities=12%  Similarity=0.138  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 007604           51 GISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPP  130 (596)
Q Consensus        51 ~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  130 (596)
                      ...+.+|.+. +++|.++.+.+++.+++.++..++.+++|+++||+ |||+++.++.++..++.+++..+.         
T Consensus         9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~---------   77 (377)
T PRK11102          9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ---------   77 (377)
T ss_pred             HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc---------
Confidence            3446666665 47999999999999999999999999999999998 999999999999999988887764         


Q ss_pred             CCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 007604          131 CNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLV  210 (596)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~  210 (596)
                                     +...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+....+|..++|.+++
T Consensus        78 ---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~  136 (377)
T PRK11102         78 ---------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGG  136 (377)
T ss_pred             ---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           67778899999999999999999999999999876      999999999999999999999999


Q ss_pred             hccccccchhhhHHHHHHHHHHHHHH
Q 007604          211 YIQDDVGWALGYGLPALGLAIAIAIF  236 (596)
Q Consensus       211 ~l~~~~g~~~~f~~~~~~~~~~~~~~  236 (596)
                      ++.+..+|++.|++.++..++..+..
T Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102        137 WLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            99888899999988776655554433

>PRK10133 L-fucose transporter; Provisional

Probab=99.87  E-value=3.7e-19  Score=191.49  Aligned_cols=152  Identities=11%  Similarity=0.068  Sum_probs=122.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      ...+..+.+..+...+........+|. +++++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++.+++.+++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~  102 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            344555555555555555545555554 5889999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++.+++..+...                     .+...++++|+++|+|.|...+...+++.|..|+++      |....
T Consensus       103 ~~~~l~~~~~~a---------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~  155 (438)
T PRK10133        103 LGAALFWPAAEI---------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRL  155 (438)
T ss_pred             HHHHHHHHHHhc---------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHH
Confidence            999876422100                     177889999999999999999999999998765553      66668


Q ss_pred             HHHHHHHHHHHHHhhhhhhhc
Q 007604          192 NWWMFSIFFGTLLGNTVLVYI  212 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l  212 (596)
                      +..+....+|..+|+.+++.+
T Consensus       156 s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        156 NLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888899999999877654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.87  E-value=2.5e-21  Score=198.00  Aligned_cols=180  Identities=12%  Similarity=0.120  Sum_probs=160.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHH
Q 007604           29 RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFF  108 (596)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  108 (596)
                      +..++.+.++++.+.+++..-|.+-+.+ .-.++.+|.+++..|.+.+.+.+.+.+..|+.|+++||+ .||+++.+|..
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~  106 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF  106 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence            3445668888899999999998776644 456788999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhh
Q 007604          109 FYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL  188 (596)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  188 (596)
                      ++.+++++++++.                        ..+++.+.|.+.|+|.+.+.|.++++++|.||+.+      |+
T Consensus       107 iW~~Av~~~~fs~------------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs  156 (493)
T KOG1330|consen  107 IWTLAVFASGFSN------------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RS  156 (493)
T ss_pred             HHHHHHHHHHHHH------------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hh
Confidence            9999999999985                        78899999999999999999999999999999997      99


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHHHhcC
Q 007604          189 SFFNWWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIFLAGT  240 (596)
Q Consensus       189 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  240 (596)
                      +.++++|+++++|..+|.++++++....+ ||++|+..+++.++..++.++..
T Consensus       157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~  209 (493)
T KOG1330|consen  157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV  209 (493)
T ss_pred             HHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence            99999999999999999999999988776 99999999887665555544443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.86  E-value=3.7e-19  Score=191.53  Aligned_cols=355  Identities=14%  Similarity=0.133  Sum_probs=220.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhh---cchhH-HHHHHHHHHHHHHHHHH
Q 007604           43 VFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAY---LGRYW-TFVIAFFFYLMGMIVLA  118 (596)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grk~-~~~~~~~~~~i~~~~~~  118 (596)
                      +..++....+..+++.|+++.+|+++.+.|.+.++..+...+..|+.|+++||.   +|||| .++++....+++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            444555566678899999999999999999999999999999999999999983   38855 56677777777777776


Q ss_pred             HHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHH
Q 007604          119 LSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSI  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  198 (596)
                      ...+.+                  .......+.+.+++.+++.+...+...++..|..++++     +|++..++.+...
T Consensus        89 ~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~  145 (437)
T TIGR00792        89 TTPDFS------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGA  145 (437)
T ss_pred             hCCCCC------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHH
Confidence            542111                  00134455666777888888888888899999886543     4999999988888


Q ss_pred             HHHHHHhhhhhhhcc-------ccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCC
Q 007604          199 FFGTLLGNTVLVYIQ-------DDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPL  271 (596)
Q Consensus       199 ~ig~~l~~~~~~~l~-------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (596)
                      ++|..+++.+.+.+.       +..+|++++.+.++..++..+..+...++.+++.+++++.                  
T Consensus       146 ~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~------------------  207 (437)
T TIGR00792       146 TLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEK------------------  207 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc------------------
Confidence            888877765544432       2468999888777665544443333222211100000000                  


Q ss_pred             CCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhccc
Q 007604          272 PIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQIN  351 (596)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~  351 (596)
                                           +    .  ...+..               +...+.|.+...+...+.....+.......
T Consensus       208 ---------------------~----~--~~~~~~---------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (437)
T TIGR00792       208 ---------------------K----L--SLKQIF---------------KALFKNDQLLILCLAYLFYNLAFNIKNGVQ  245 (437)
T ss_pred             ---------------------C----C--CHHHHH---------------HHHhCCHHHHHHHHHHHHHHHHHHHHcchh
Confidence                                 0    0  000000               000111222222221111111111111122


Q ss_pred             ceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 007604          352 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASF  431 (596)
Q Consensus       352 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~  431 (596)
                      .++...... +       ....+.+.....+..+++.++..++.+|+++|           +.+.++.++.+++++...+
T Consensus       246 ~~~~~~~~~-~-------~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~  306 (437)
T TIGR00792       246 VYYFTYVLG-D-------PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----------ILFAGGILLMVLGYLIFFF  306 (437)
T ss_pred             heeEeeecC-C-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHH
Confidence            222221111 0       00112233445666777777777777666655           3466676666666655544


Q ss_pred             HhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhcc-------chhHHHHHHHHHHHHhHH
Q 007604          432 TERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAP-------ESMKSLGTSYSMTTLGVG  504 (596)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~ig  504 (596)
                      ..                    .+.+.+++..++.+++.+...+..+++..|..|       ++.+|+++|++++...+|
T Consensus       307 ~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g  366 (437)
T TIGR00792       307 AG--------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLG  366 (437)
T ss_pred             cc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHH
Confidence            21                    133445556677888988888888999888765       567899999999999999


Q ss_pred             HHHHhHHHhhhhccc
Q 007604          505 NFLSSFLLSTVSDIT  519 (596)
Q Consensus       505 ~~lg~~~~~~i~~~~  519 (596)
                      ..+++.+.+.+.+..
T Consensus       367 ~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       367 QALAGFLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=6.3e-20  Score=186.51  Aligned_cols=391  Identities=12%  Similarity=0.028  Sum_probs=267.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHH
Q 007604           29 RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFF  108 (596)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  108 (596)
                      +.++|.++ +....+..++..+.+.+.+..++++++|+|+.|.++++.+..+...+..++-|.+.||+ |-|++..++++
T Consensus        10 ~~~~~~L~-~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~   87 (417)
T COG2223          10 RIARRNLW-LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML   87 (417)
T ss_pred             cchhHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence            34445555 44445666777777888888899999999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhh
Q 007604          109 FYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL  188 (596)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  188 (596)
                      +.++-.+..+++...+                     +.+.+++.+++.|++- +..+...++++.+||+++      +|
T Consensus        88 l~~IP~~~~~~a~~~~---------------------~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~------qG  139 (417)
T COG2223          88 LLLIPCLGLAFAVTYP---------------------STWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEK------QG  139 (417)
T ss_pred             HHHHHHHHHHHHccCC---------------------chHHHHHHHHHHhccc-ceehcccccccccCChhh------hh
Confidence            9999998888885322                     4568888888999884 456777888999999996      99


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhcccccc---chhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHH
Q 007604          189 SFFNWWMFSIFFGTLLGNTVLVYIQDDVG---WALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIR  265 (596)
Q Consensus       189 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (596)
                      .+.+++. ..|+|..+...+++.+....|   |+.+..+.++..++..+.+++..++.+...+..++...  ..+     
T Consensus       140 ~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~~~-----  211 (417)
T COG2223         140 LALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--AQL-----  211 (417)
T ss_pred             HHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--hHH-----
Confidence            9999999 889999999999999888888   99999988888777776666665554332221111100  000     


Q ss_pred             hcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhh
Q 007604          266 KRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPST  345 (596)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~  345 (596)
                                                                              +.+...+..-....+....+.-+.
T Consensus       212 --------------------------------------------------------~~v~~~~~~W~lsllY~~tFG~Fv  235 (417)
T COG2223         212 --------------------------------------------------------KAVFSNKDTWLLSLLYFATFGGFV  235 (417)
T ss_pred             --------------------------------------------------------HHHhcCcchHHHHHHHHHHHHHHH
Confidence                                                                    000101111111111122222222


Q ss_pred             hhh-cccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHH
Q 007604          346 MLA-QINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHII  424 (596)
Q Consensus       346 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~  424 (596)
                      .+. +.+.++..+.. .+       ....+.+....++...+.-|+.+++.||++.+           +...+.+..+++
T Consensus       236 gfs~~l~~~~~~~fg-~~-------~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-----------rv~~~~f~~~~~  296 (417)
T COG2223         236 GFSAYLPMYLVTQFG-LS-------PVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-----------RVTLAVFVGMAL  296 (417)
T ss_pred             HHHHHHHHHHHHhcC-CC-------hhhHHHHHHHHHHHHHHHHhccchhhhhccch-----------hHHHHHHHHHHH
Confidence            222 12222222211 11       22234566677778888889999988888777           335666666776


Q ss_pred             HHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHH
Q 007604          425 IMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVG  504 (596)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig  504 (596)
                      +....++.....              ....+.+..+..++..++..++-+-..+-++....|+ +.|.+.|+....+++|
T Consensus       297 ~~~~l~~~~~~~--------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lG  361 (417)
T COG2223         297 AAALLSLFLTGF--------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLG  361 (417)
T ss_pred             HHHHHHcccccc--------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhcccc
Confidence            766665532100              0013444455555666666666666666777766764 7889999999999999


Q ss_pred             HHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 007604          505 NFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFY  562 (596)
Q Consensus       505 ~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~  562 (596)
                      ++.-|...+...+.+               +.+...|+++....+++.++.+....+.
T Consensus       362 Gf~lp~~~g~~~~~t---------------g~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         362 GFFLPLAFGVSLDLT---------------GSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             ccchhHHHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999888887655               2456678888888888887777766543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.86  E-value=3.4e-19  Score=214.69  Aligned_cols=361  Identities=12%  Similarity=0.065  Sum_probs=217.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCh--hhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGT--VKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      +.+..+++..++..+...+....+..++...++.+.  ...+++.+++.++..++++++|+++||+ |||++++++.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence            455556666666666665555566666665666544  4468889999999999999999999998 9999999998776


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      +++.++..++...                     .+.+.+++.|++.|++.+...++..++++|++|+++      |+++
T Consensus        88 ~~~~~~~~~~~~~---------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~  140 (1146)
T PRK08633         88 VGLTLLIVLAYYL---------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRA  140 (1146)
T ss_pred             HHHHHHHHHHHHH---------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhh
Confidence            6665554443211                     157789999999999999999999999999999986      9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccc--------c-cchhhhHHHHHHH-HHHHHHHHhcCCceeccCCCCChhHHHHHHH
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDD--------V-GWALGYGLPALGL-AIAIAIFLAGTPFYRHKKPAGSPFTRMAKVI  260 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~--------~-g~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (596)
                      +++...+.++|.++|+.+++++...        + +|++.+.+.++.. ++++++.+.. ++.+...+......      
T Consensus       141 ~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------  213 (1146)
T PRK08633        141 NGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRL-PKVPAAAPEVFDKK------  213 (1146)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcC-cCCCCCCccccccc------
Confidence            9999999999999999999988765        2 2333333333222 2222222222 22111100000000      


Q ss_pred             HHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhH-HHHHHH
Q 007604          261 VAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAM-IPILVA  339 (596)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~-~~~~~~  339 (596)
                                ......                        ...+..               ..+.+.+.+... +...+.
T Consensus       214 ----------~~~~~~------------------------~~~~~~---------------~~l~~~~~~~~~~~~~~~~  244 (1146)
T PRK08633        214 ----------KYLFPK------------------------LLWRNL---------------KLLRSDRVLWLAIIGLSYF  244 (1146)
T ss_pred             ----------ccccHH------------------------HHHHHH---------------HHHhcCcHHHHHHHHHHHH
Confidence                      000000                        000000               000011111111 111111


Q ss_pred             hhhhhhhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHH
Q 007604          340 TFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGL  419 (596)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~  419 (596)
                      ....+.....++.++... ...+.      ....+.+.....++.+++..+.+++.++..++           +.+.++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~-~g~s~------~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----------~~~~~~~  306 (1146)
T PRK08633        245 WFISQLAQANFPAYAKEV-LGLDN------TFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----------GLVPLGA  306 (1146)
T ss_pred             HHHHHHHHHhhHHHHHHH-hCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----------cchhHHH
Confidence            111111111111111111 00010      00122334444555555555655544333322           2355566


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHH
Q 007604          420 VIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMT  499 (596)
Q Consensus       420 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  499 (596)
                      ++.+++++.+.+.                     .+.+.+++..++.|++.++..+...+++.+.+|++.||+++|+.++
T Consensus       307 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~  365 (1146)
T PRK08633        307 LGLALSLFLLPTA---------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNF  365 (1146)
T ss_pred             HHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence            6666665555442                     2455666777888999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhHHHhhhh
Q 007604          500 TLGVGNFLSSFLLSTVS  516 (596)
Q Consensus       500 ~~~ig~~lg~~~~~~i~  516 (596)
                      ...+|..+++.+.+.+.
T Consensus       366 ~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        366 LQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999988877766553

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.86  E-value=1.9e-19  Score=216.51  Aligned_cols=351  Identities=11%  Similarity=0.021  Sum_probs=202.4

Q ss_pred             HHhhhcCCCh-hhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH--HHHHHHHHHHHhhccCCCCCCCCCCC
Q 007604           59 YLTDKLHHGT-VKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF--YLMGMIVLALSVSLSGLKPPPCNDIN  135 (596)
Q Consensus        59 yl~~~lg~~~-~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~  135 (596)
                      .++...+.+. ...++..+++.+...++++++|+++||+ |||+++.....+  ......+..+..              
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~--------------  105 (1140)
T PRK06814         41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL--------------  105 (1140)
T ss_pred             HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence            3333443333 4567788889999999999999999999 999986442222  111222222221              


Q ss_pred             CccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccc
Q 007604          136 SQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDD  215 (596)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~  215 (596)
                               .+.+.++++|+++|++.+.+.|+..+++.|++|+++      |+.+.++.+++.++|.++||.++|++...
T Consensus       106 ---------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~  170 (1140)
T PRK06814        106 ---------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATIS  170 (1140)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     178889999999999999999999999999999986      99999999999999999999999999998


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCccccc
Q 007604          216 VGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIG  295 (596)
Q Consensus       216 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (596)
                      .+|++.|++.++..++++++.+..++. +..++..+......+.....+                               
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------------------------  218 (1140)
T PRK06814        171 GNFVILVALLMGIAVLGWLASLFIPKT-GNAAPDLKIDRNIIRSTITLL-------------------------------  218 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCeeccchHHHHHHHH-------------------------------
Confidence            999998855544444444333332221 111110000000000000000                               


Q ss_pred             CCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhH-HHHHHHhhhhhhhhhcccceeeeeeccccccCCCccccccc
Q 007604          296 STQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAM-IPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPA  374 (596)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  374 (596)
                                                ..+.+.+.+... +...++...+.....+++.+.... .+.+       ....+
T Consensus       219 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~g~~-------~~~~g  264 (1140)
T PRK06814        219 --------------------------KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-LGGD-------ENVAT  264 (1140)
T ss_pred             --------------------------HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-cCCc-------hHHHH
Confidence                                      000111111111 111122222222222222222111 0001       11223


Q ss_pred             ccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCccee
Q 007604          375 SLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL  454 (596)
Q Consensus       375 ~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (596)
                      .+.....++.+++..+.+++.++..++           +.+..+.++.++..+.+.+.... .......-..-..-....
T Consensus       265 ~~~~~~~~g~~ig~~~~g~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~  332 (1140)
T PRK06814        265 LFLAVFSVGVAVGSFLASKLSEGRITL-----------LYVPIGALLMGLFGLDLAFASSS-VPAEPAQLKSILVFLSKR  332 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCceee-----------eeehHHHHHHHHHHHHHHhcccc-cccccccccchhhhhccc
Confidence            344555666677777766654322222           11333333333333322221000 000000000000000012


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhc
Q 007604          455 TIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD  517 (596)
Q Consensus       455 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~  517 (596)
                      +.+.+++..+++|++.++..+...+++.+.+|++.||+++|+.++.+.++..+++.+.+.+..
T Consensus       333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666777888999999999999999999999999999999999999999999999888753

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.85  E-value=1.2e-19  Score=190.34  Aligned_cols=160  Identities=13%  Similarity=0.065  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      ..+..++..+......+.....+|.++++++|+++.+.+++.+.+.++..++++++|+++||+ |||+++.++.++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            345566666666667777777788789999999999999999999999999999999999998 9999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      .++++++..                       +...++++|+++|++.+. .+...++++|.+|+++      |+++.++
T Consensus        81 ~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~  130 (366)
T TIGR00886        81 CLWAGLAVQ-----------------------SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGL  130 (366)
T ss_pred             HHHHHHHhh-----------------------hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHH
Confidence            888877630                       566788899999999665 4567889999999886      9999999


Q ss_pred             HHHHHHHHHHHhhhhhhhccc----------cccchhhhHH
Q 007604          194 WMFSIFFGTLLGNTVLVYIQD----------DVGWALGYGL  224 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l~~----------~~g~~~~f~~  224 (596)
                      .....++|..+++.+++.+..          ..+||+.|++
T Consensus       131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            888888888888777665543          3479999844

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.85  E-value=1e-18  Score=184.91  Aligned_cols=335  Identities=8%  Similarity=-0.013  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchh----HHHHHHHHHHHHHHHHHH
Q 007604           43 VFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRY----WTFVIAFFFYLMGMIVLA  118 (596)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk----~~~~~~~~~~~i~~~~~~  118 (596)
                      ++..+++..+.+++|.|++ ++|.+..+.|++.+++.+...+++++.|.++||+ ||+    +.+.++..+.   .+...
T Consensus        14 ~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~~   88 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAFW   88 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHHH
Confidence            3334455566788889986 5899999999999999999999999999999998 984    3332222211   11111


Q ss_pred             HHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHH
Q 007604          119 LSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSI  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  198 (596)
                      ...                       .+.+.+++.|++.|++.+...|...++..++ . +      +|++.++..+...
T Consensus        89 ~~~-----------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~-~------~~~~a~~~~~~~~  137 (382)
T PRK11128         89 FGA-----------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW-Q-K------QIGLDYGKVRLWG  137 (382)
T ss_pred             Hhc-----------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH-H-h------hccCCcchHHHHH
Confidence            111                       1677888899999999999999888887776 2 2      2788888888888


Q ss_pred             HHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhh
Q 007604          199 FFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQEL  278 (596)
Q Consensus       199 ~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (596)
                      ++|.++||.+++++.+.+|||..|++.++..++..+..+ ..++.   ++++++.++                ..+    
T Consensus       138 ~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~----------------~~~----  193 (382)
T PRK11128        138 SIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQGESRQQ----------------ESA----  193 (382)
T ss_pred             HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCccccccc----------------ccc----
Confidence            999999999999999989999999877765444333222 22211   111100000                000    


Q ss_pred             hhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHH-HHHHhhhhhhhhhcccceeeee
Q 007604          279 YELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIP-ILVATFVPSTMLAQINTLFVKQ  357 (596)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  357 (596)
                                       ..+.  +                   .++.+.|.+...+. .++....+.......+.+. .+
T Consensus       194 -----------------~~~~--~-------------------~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~  234 (382)
T PRK11128        194 -----------------GWPA--W-------------------KALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW-QA  234 (382)
T ss_pred             -----------------ccch--H-------------------HHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH-HH
Confidence                             0000  0                   00111122222211 1111122211222111211 11


Q ss_pred             eccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007604          358 GTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRL  437 (596)
Q Consensus       358 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~  437 (596)
                       .+.+       ....+.+.....+..++...+.+++.+|++           ..+.+.++.++.+++++..+..     
T Consensus       235 -~g~s-------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~-----------~~~~l~~~~~~~~~~~~~~~~~-----  290 (382)
T PRK11128        235 -AGYS-------ASTIGYLWSLGVVAEVLIFAFSNRLFRRWS-----------ARDLLLLSAICGVVRWGLMGST-----  290 (382)
T ss_pred             -CCCC-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHHHHHHHhh-----
Confidence             1111       111222333444444444455555443333           3355677777777776655543     


Q ss_pred             hhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHH-HHHhHHHHHHhHHHhhhh
Q 007604          438 SVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSM-TTLGVGNFLSSFLLSTVS  516 (596)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~lg~~~~~~i~  516 (596)
                                      .+.+.+++..++.|++.++..+....++.+. |++.++++++..+ ....+|..+|+.+.+.+.
T Consensus       291 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~  353 (382)
T PRK11128        291 ----------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY  353 (382)
T ss_pred             ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            2455666677889999999999999998887 5555789999887 556788899999999887


Q ss_pred             c
Q 007604          517 D  517 (596)
Q Consensus       517 ~  517 (596)
                      +
T Consensus       354 ~  354 (382)
T PRK11128        354 Q  354 (382)
T ss_pred             H
Confidence            5

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.85  E-value=3.2e-18  Score=186.83  Aligned_cols=386  Identities=12%  Similarity=0.097  Sum_probs=233.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhh----cchhHH-HHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAY----LGRYWT-FVI  105 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grk~~-~~~  105 (596)
                      .+|+.+.++...+......+.....++.|++ +.|.+.++.+... ..... +++.++.|.++||+    +||||. +++
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence            3455666777777777777777788888877 4599999998863 23333 36899999999995    288885 556


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhh
Q 007604          106 AFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKA  185 (596)
Q Consensus       106 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  185 (596)
                      +.+..+++...+++...                     ..+...+.+.+++.+++.+...+...++..|++|+++     
T Consensus        87 ~~i~~~~~~~~~a~~~~---------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~-----  140 (491)
T PRK11010         87 TQLLLLVAIAAMGFLEP---------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE-----  140 (491)
T ss_pred             HHHHHHHHHHHHHHcCC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-----
Confidence            66667677666665421                     1256778888999999999999999999999999886     


Q ss_pred             hhhhhHHHHHHHHHHHHHHhhhhhhhccc-cccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHH
Q 007604          186 HKLSFFNWWMFSIFFGTLLGNTVLVYIQD-DVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAI  264 (596)
Q Consensus       186 ~r~~~~~~~~~~~~ig~~l~~~~~~~l~~-~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (596)
                       |+++.++...+.++|.++++.+.+++.+ ..|||.+|++.++..++..+..+..++. ++.+++++...+.   .    
T Consensus       141 -rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~-~~~~~~~~~~~~~---~----  211 (491)
T PRK11010        141 -RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEP-TDTIPVPKTLEQA---V----  211 (491)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCC-ccccccccchhhh---H----
Confidence             9999999999999999999999998888 5799999998887655554443332211 1100000000000   0    


Q ss_pred             HhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhh
Q 007604          265 RKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPS  344 (596)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~  344 (596)
                                      .                +  .+.+   .               .++.+........++......
T Consensus       212 ----------------~----------------~--~l~~---~---------------~~~~~~~~~ll~~~l~~~~~~  239 (491)
T PRK11010        212 ----------------V----------------A--PLRD---F---------------FGRNNAWLILLLIVLYKLGDA  239 (491)
T ss_pred             ----------------H----------------H--HHHH---H---------------HcCcCHHHHHHHHHHHHHHHH
Confidence                            0                0  0000   0               000011111111111112222


Q ss_pred             hhhhcccceeeeeeccccccCCCcccccccccc-cchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHH
Q 007604          345 TMLAQINTLFVKQGTTLDRAIGSSFKIPPASLT-GFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHI  423 (596)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~  423 (596)
                      ......++++... .+.+.       ...+... ....++.+++..+.+++.||+++|           +.+.++.++.+
T Consensus       240 ~~~~~~~~~l~~~-~G~s~-------~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-----------~~l~i~~~l~~  300 (491)
T PRK11010        240 FAMSLTTTFLIRG-VGFDA-------GEVGLVNKTLGLLATIVGALYGGILMQRLSLF-----------RALMIFGILQG  300 (491)
T ss_pred             HHHHHHHHHHHHh-cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHH
Confidence            2222222222111 11111       1112222 233456667777888877777765           22333334333


Q ss_pred             HHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhH
Q 007604          424 IIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGV  503 (596)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~i  503 (596)
                      ++.+.+.....                 ...+.+.+....++..+..++..+..+++..+..|++.+++..|+.+....+
T Consensus       301 l~~l~~~~l~~-----------------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~l  363 (491)
T PRK11010        301 VSNAGYWLLSI-----------------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAV  363 (491)
T ss_pred             HHHHHHHHHHh-----------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence            33322211100                 0113333344445555555566667788888999999999999999999999


Q ss_pred             HHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 007604          504 GNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVV  558 (596)
Q Consensus       504 g~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~  558 (596)
                      |..+++.+.+.+.+..                ++...|.+.+++.+++++..+.+
T Consensus       364 g~~~~~~~~G~l~~~~----------------G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        364 GRVYVGPVAGWFVEAH----------------GWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHh----------------ChHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888887522                34567777777777776666555

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.3e-19  Score=193.84  Aligned_cols=377  Identities=13%  Similarity=0.131  Sum_probs=244.1

Q ss_pred             hcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcccccc
Q 007604           63 KLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKA  142 (596)
Q Consensus        63 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (596)
                      +++++..+.+++.+.+..|..++++++|+++||+ |-|+++.++.++.++++++...+...                   
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~-------------------  126 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI-------------------  126 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            6889999999999999999999999999999999 99999999999999999999988642                   


Q ss_pred             ccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccc-ccchhh
Q 007604          143 STLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDD-VGWALG  221 (596)
Q Consensus       143 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~-~g~~~~  221 (596)
                         +...+.+.|+++|++.|...|+...+.+.+.|+.|      |+++.++.+.+..+|.+++..++|++.+. .||+.+
T Consensus       127 ---~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~si  197 (466)
T KOG2532|consen  127 ---GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSI  197 (466)
T ss_pred             ---cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchH
Confidence               34467899999999999999999999999999998      99999999999999999999999999988 999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchh
Q 007604          222 YGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLR  301 (596)
Q Consensus       222 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (596)
                      |++.++..++..++++....+.+.+++.                       .+..|+.+..+....+....+    .   
T Consensus       198 fY~~g~~g~i~~~~w~~~~~d~P~~h~~-----------------------is~~El~~I~~~k~~~~~~~~----~---  247 (466)
T KOG2532|consen  198 FYVFGIVGLIWFILWFLFYSDSPSKHPN-----------------------ISEKELKYIEKGKSEAHVKKK----P---  247 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccCCC-----------------------CCHHHHHHHHhcccccccCCC----C---
Confidence            9998876554444443333222221111                       111111111110000000000    0   


Q ss_pred             hhhhhhhhcCCCCCcccccchhhhhhhhHHh-HHHHHHHhhhhhhhhhcccceeeeeeccccccCCCcccccccccccch
Q 007604          302 FFNKAAVKTGATNPWILCSVSQVEETTQMLA-MIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFV  380 (596)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  380 (596)
                                 ..||+     .+-....+.. .+..+.....++...++.|+++.. ..+++       -..++..+++.
T Consensus       248 -----------~vP~~-----~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~-VL~f~-------v~~~G~~salP  303 (466)
T KOG2532|consen  248 -----------PVPYK-----AILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKE-VLGFD-------VRETGFLSALP  303 (466)
T ss_pred             -----------CCCHH-----HHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HhCCC-------hhhhhHHHHHH
Confidence                       01221     0011111222 222223334444444444554422 22222       12457777888


Q ss_pred             hHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHH--HHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHH
Q 007604          381 TLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRM--GIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFI  458 (596)
Q Consensus       381 ~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l--~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (596)
                      .+...+...+.+.+.|++.+|.  ..  ....+++  .++....++.++.+++...                   .+. +
T Consensus       304 ~l~~~~~k~~~g~lsD~l~~~~--ls--~t~~rkifn~i~~~~~ai~l~~l~~~~~-------------------~~~-~  359 (466)
T KOG2532|consen  304 FLAMAIVKFVAGQLSDRLTFRI--LS--ETTVRKIFNTIAFGGPAVFLLVLAFTSD-------------------EHR-L  359 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc--Cc--hHhHHHHHHhHHHHHHHHHHHeeeecCC-------------------Ccc-h
Confidence            8888888888899888888872  11  1222333  3344445555555554321                   111 1


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchh
Q 007604          459 MLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLD  538 (596)
Q Consensus       459 li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~  538 (596)
                      ..+..+.++.+.......+..-.....-+++.+..+|+.+....+..+++|.+++.+.. .+  ..          ....
T Consensus       360 ~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~--t~----------~eW~  426 (466)
T KOG2532|consen  360 LAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN--TR----------EEWR  426 (466)
T ss_pred             HHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC--CH----------HHHH
Confidence            22222333333333333333333333146899999999999999999999999998863 10  11          2346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 007604          539 YYYAFFAILNVLNFVFFLVVA  559 (596)
Q Consensus       539 ~~f~~~~~~~~v~~~~~~~~~  559 (596)
                      .+|++.+++.+++.++|.++.
T Consensus       427 ~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  427 IVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHHHHHHhchheeEee
Confidence            789999999998888877774

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.84  E-value=1.5e-18  Score=183.19  Aligned_cols=343  Identities=11%  Similarity=0.077  Sum_probs=198.6

Q ss_pred             HHHHHHhhhcC--CChhhhhhHHHH--H---HHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 007604           55 NLVMYLTDKLH--HGTVKSANNVTN--W---GGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLK  127 (596)
Q Consensus        55 ~l~~yl~~~lg--~~~~~~~~~~~~--~---~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~  127 (596)
                      ....++.++..  .++++.+.+.+.  +   .++..+++++.|+++||+ |||+++.++.++..++.++++++.+...  
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~--   90 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT--   90 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence            44455554543  444555544432  2   233346889999999998 9999999999999999988887642110  


Q ss_pred             CCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 007604          128 PPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNT  207 (596)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~  207 (596)
                                    ........++++|+++|++.+...+...+++.|.+|+++      |+...++.+.+..+|..+++.
T Consensus        91 --------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~  150 (394)
T TIGR00883        91 --------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAAL  150 (394)
T ss_pred             --------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHH
Confidence                          000012357889999999999999999999999999886      999999999999999999987


Q ss_pred             hhhhcc--------ccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 007604          208 VLVYIQ--------DDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELY  279 (596)
Q Consensus       208 ~~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (596)
                      +...+.        +.++||++|++.++..+++.......++.     ++.+. .          +++.           
T Consensus       151 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~----------~~~~-----------  203 (394)
T TIGR00883       151 TVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEET-----PVFEK-A----------QEKH-----------  203 (394)
T ss_pred             HHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCC-----hhHHH-H----------Hhcc-----------
Confidence            765542        35789999988776554443332211110     00000 0          0000           


Q ss_pred             hhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhh-hhhHHhHHHHH-HHhhhhhhhhhcccceeeee
Q 007604          280 ELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEE-TTQMLAMIPIL-VATFVPSTMLAQINTLFVKQ  357 (596)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~  357 (596)
                                   +....+ ..                    +..++ ++.+....... +....++......+.+...+
T Consensus       204 -------------~~~~~~-~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (394)
T TIGR00883       204 -------------KKKRGP-IR--------------------ETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT  249 (394)
T ss_pred             -------------ccccCC-HH--------------------HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         000000 00                    00011 11122111111 11111111111111221111


Q ss_pred             eccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHH-HHHHHHHHHHHHHhhhh
Q 007604          358 GTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGL-VIHIIIMVIASFTERYR  436 (596)
Q Consensus       358 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~-~l~~~~~~~~~~~~~~~  436 (596)
                       ...+       ....+.......+..++..++.+++.||++||+           .+..+. +....+.........  
T Consensus       250 -~g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~~~~--  308 (394)
T TIGR00883       250 -LGLS-------ANSALLVLMLSLILFFITIPLSGALSDRIGRRP-----------VLIIFTVLAALLAVPLLMALLD--  308 (394)
T ss_pred             -cCCC-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-----------HHHHHHHHHHHHHHHHHHHHhc--
Confidence             1111       111223334455666777778888777776662           122222 222222111111100  


Q ss_pred             hhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHH-HHHHHhHHHHHHhHHHhhh
Q 007604          437 LSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY-SMTTLGVGNFLSSFLLSTV  515 (596)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~~lg~~~~~~i  515 (596)
                                      ..+.+..+...++.+++.+...+..++++.|.+|++.|++++|+ ++..+.+|..+++.+.+.+
T Consensus       309 ----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l  372 (394)
T TIGR00883       309 ----------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAAL  372 (394)
T ss_pred             ----------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHH
Confidence                            12334445556777888888888899999999999999999998 4566778888999999888


Q ss_pred             hcc
Q 007604          516 SDI  518 (596)
Q Consensus       516 ~~~  518 (596)
                      .+.
T Consensus       373 ~~~  375 (394)
T TIGR00883       373 VAM  375 (394)
T ss_pred             HHH
Confidence            753

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00896 CynX cyanate transporter

Probab=99.83  E-value=1.3e-18  Score=182.08  Aligned_cols=324  Identities=10%  Similarity=0.099  Sum_probs=207.5

Q ss_pred             HHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 007604           56 LVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDIN  135 (596)
Q Consensus        56 l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  135 (596)
                      +...+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.. .+.              
T Consensus        22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~--------------   85 (355)
T TIGR00896        22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP--------------   85 (355)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc--------------
Confidence            33456779999999999999999999999999999999998 99999999988887777665 332              


Q ss_pred             CccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccc
Q 007604          136 SQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDD  215 (596)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~  215 (596)
                                +...+++.|++.|++.+...+..+.+..|.+|+ +      |+++.++++...++|..+++.+++.+.+.
T Consensus        86 ----------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896        86 ----------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      667788999999999998888888888888864 3      99999999999999999999888888765


Q ss_pred             c--cchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCccc
Q 007604          216 V--GWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYR  293 (596)
Q Consensus       216 ~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (596)
                      .  +||+.|.+.++..++..... .  ++.+++++++++.                  .                    +
T Consensus       149 ~~~~w~~~f~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~------------------~--------------------~  187 (355)
T TIGR00896       149 SGGHWQQALAWWALPALLALLAW-I--PQVRRRVAANQTT------------------T--------------------R  187 (355)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHH-h--hhhccccCCCCCC------------------C--------------------C
Confidence            4  39988876654433332221 1  1111111000000                  0                    0


Q ss_pred             ccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHH-HHHHHhhhhhhhhhcccceeeeeeccccccCCCccccc
Q 007604          294 IGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMI-PILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIP  372 (596)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  372 (596)
                      .                   ..++     -.++ +...... ...+....++....+.+.+....  +.+       ...
T Consensus       188 ~-------------------~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--g~~-------~~~  233 (355)
T TIGR00896       188 L-------------------TPVR-----IWRS-PLAWQVTVFFGLQSGLYYSLIGWLPAILISH--GAS-------AAT  233 (355)
T ss_pred             C-------------------CCch-----hhcC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC-------HHH
Confidence            0                   0000     0011 1111111 11111222222222222222111  111       112


Q ss_pred             ccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcc
Q 007604          373 PASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV  452 (596)
Q Consensus       373 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (596)
                      .+.......++.+++.++.+++.||+.+|+          +.+.++.++.+++.+...+..                   
T Consensus       234 ~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----------~~~~~~~~~~~~~~~~~~~~~-------------------  284 (355)
T TIGR00896       234 AGSLLALMQLAQAASALLIPALARRVKDQR----------GIVAVLAVLQLVGLCGLLFAP-------------------  284 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhhccch----------HHHHHHHHHHHHHHHHHHHhh-------------------
Confidence            234455566777777778788766663331          234556666666665554431                   


Q ss_pred             eehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhcc-chhHHHHHHHHHHHHhHHHHHHhHHHhhhhccc
Q 007604          453 PLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAP-ESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDIT  519 (596)
Q Consensus       453 ~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~  519 (596)
                       .+..+  ...++.|++.+...|...+...+..+ ++.++..+++.+....++..+++.+.+.+.+.+
T Consensus       285 -~~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       285 -MHGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             -hhHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             11111  13467789998888887777765554 677899999999999999999999999987644

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.82  E-value=2.4e-17  Score=175.86  Aligned_cols=169  Identities=13%  Similarity=0.127  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      ++.+....+...+. +++...+...+++++|.+..+.+++.+.+.++..++.++.|++.||+ |||+++.++.++++++.
T Consensus         5 ~~~~~~~f~~~G~~-~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFA-NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHH-HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            33344333333333 34554555667889999999999999999999999999999999998 99999999999999998


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      ++...+...                     .+...+.++|++.|+|.|...+...+++.+..|+++      |++..++.
T Consensus        83 ~l~~~~~~~---------------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~  135 (410)
T TIGR00885        83 FLFWPAAEI---------------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLA  135 (410)
T ss_pred             HHHHHHHhh---------------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHH
Confidence            776544211                     167788899999999999999999999999988875      88889999


Q ss_pred             HHHHHHHHHHhhhhhhhcccc--------------------------ccchhhhHHHHHHHHHH
Q 007604          195 MFSIFFGTLLGNTVLVYIQDD--------------------------VGWALGYGLPALGLAIA  232 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~l~~~--------------------------~g~~~~f~~~~~~~~~~  232 (596)
                      +...++|..+||.+++.+...                          .+||++|.+.++..++.
T Consensus       136 ~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~  199 (410)
T TIGR00885       136 QSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAV  199 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888766321                          36999998776654433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.81  E-value=1.7e-17  Score=173.75  Aligned_cols=157  Identities=12%  Similarity=0.095  Sum_probs=118.4

Q ss_pred             HHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhh----cchhHHH-HHHHHHHHHHHHHHHHHhhccCCC
Q 007604           53 SSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAY----LGRYWTF-VIAFFFYLMGMIVLALSVSLSGLK  127 (596)
Q Consensus        53 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grk~~~-~~~~~~~~i~~~~~~~~~~~~~~~  127 (596)
                      .......+.+++|+|.++.++.... .+...+ .++.|.++||+    +||||.+ +.+.++.++....+++...     
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-----   79 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-----   79 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----
Confidence            3434444556889999999999655 333444 88999999997    4899975 5566666666555554321     


Q ss_pred             CCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 007604          128 PPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNT  207 (596)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~  207 (596)
                                      ..+...++...++.+++.+...++..+++.|++|+++      |+.+.++...+.++|.++++.
T Consensus        80 ----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~  137 (356)
T TIGR00901        80 ----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGS  137 (356)
T ss_pred             ----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHH
Confidence                            1255556666667788888888999999999998876      999999999999999999999


Q ss_pred             hhhhcccccc--------chhhhHHHHHHHHHHHHHHHh
Q 007604          208 VLVYIQDDVG--------WALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       208 ~~~~l~~~~g--------~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      +++++....|        ||.+|++.++..++..+..+.
T Consensus       138 l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901       138 LALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             HHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            9988887777        999999888766665544443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.80  E-value=1.8e-16  Score=169.01  Aligned_cols=163  Identities=12%  Similarity=0.061  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhh----cchhH-HHHHHHHHHHHHHHHH
Q 007604           43 VFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAY----LGRYW-TFVIAFFFYLMGMIVL  117 (596)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grk~-~~~~~~~~~~i~~~~~  117 (596)
                      +...+.+.-...-+|.|+++ .|++.++.|++......  ++..+++|+++||+    +|||| .++++.++.+++...+
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l   85 (402)
T PRK11902          9 FASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM   85 (402)
T ss_pred             HHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence            33444444456778889885 59999999999776655  69999999999997    26665 6777777777777766


Q ss_pred             HHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHH
Q 007604          118 ALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFS  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  197 (596)
                      .+...                     ..+.+.+++..++.++..+...++..+++.|++|+++      |+++.++...+
T Consensus        86 ~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g  138 (402)
T PRK11902         86 AFCPP---------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLG  138 (402)
T ss_pred             HhcCc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHH
Confidence            65421                     1245666666667788888888999999999999886      99999999999


Q ss_pred             HHHHHHHhhhhhhhcccc-ccchhhhHHHHHHHHHHHHH
Q 007604          198 IFFGTLLGNTVLVYIQDD-VGWALGYGLPALGLAIAIAI  235 (596)
Q Consensus       198 ~~ig~~l~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~  235 (596)
                      .++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus       139 ~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        139 YRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            999999999888888775 59999999887765544443

>PRK09669 putative symporter YagG; Provisional

Probab=99.79  E-value=2.4e-16  Score=170.26  Aligned_cols=356  Identities=10%  Similarity=0.078  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhh----hcchhHH-HHHHHHHHHHHH
Q 007604           40 VYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEA----YLGRYWT-FVIAFFFYLMGM  114 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grk~~-~~~~~~~~~i~~  114 (596)
                      +..+..++.+..+..+++.|+++.+|+++.++|.+.++..+...+..|+.|+++||    + ||||- ++++.+..+++.
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~   94 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVC   94 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHH
Confidence            44455566666677889999999999999999999999999999999999999999    5 87554 556666666666


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      +++...+   .+.               .......+++..++.+++..+......++.+|..++.+     +|.+..++.
T Consensus        95 ~l~f~~p---~~~---------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r  151 (444)
T PRK09669         95 LLTFYTP---DFG---------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWR  151 (444)
T ss_pred             HHHHhCC---CCC---------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHH
Confidence            5443321   110               01134445555556666666777777899999887654     488888888


Q ss_pred             HHHHHHHHHHhhhhhhh----ccc---cccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhc
Q 007604          195 MFSIFFGTLLGNTVLVY----IQD---DVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKR  267 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~----l~~---~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (596)
                      ....++|..+++.+...    +..   ..||+..+.+.+++.++..+..+...++. .+++++++ ....+.++.     
T Consensus       152 ~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~-~~~~~~~~-~~~~~~~~~-----  224 (444)
T PRK09669        152 FALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER-YTPEVDNS-SSVWKDLKL-----  224 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe-cCCCCcCC-CCHHHHHHH-----
Confidence            88888888877654332    221   24677777666655444433333222221 11110000 000000000     


Q ss_pred             CCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhh
Q 007604          268 NVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTML  347 (596)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~  347 (596)
                                                                              ..+.|.+...+...+.........
T Consensus       225 --------------------------------------------------------~~~n~~~~~l~~~~~~~~~~~~~~  248 (444)
T PRK09669        225 --------------------------------------------------------LLGNSQWRIMFIFNVVLLTAVVTR  248 (444)
T ss_pred             --------------------------------------------------------HhCCchHHHHHHHHHHHHHHHHHH
Confidence                                                                    001111222211111111111111


Q ss_pred             hcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 007604          348 AQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMV  427 (596)
Q Consensus       348 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~  427 (596)
                      .....++.....  ...     +. ...+.....+..++..++..++.+|+++|           +.+..+.++.++..+
T Consensus       249 ~~~~~y~~~~~~--~~~-----~~-~~~~~~~~~i~~ii~~~~~~~l~~r~gk~-----------~~~~~~~~~~~~~~~  309 (444)
T PRK09669        249 GGATLYYVNYVL--LRP-----DL-ATLFLVTGMIAGLFGALLSERLLGKFDRV-----------RAFKWTIVAFVILSA  309 (444)
T ss_pred             hhhhheeeeeec--CCH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHhChH-----------HHHHHHHHHHHHHHH
Confidence            111222222111  100     10 11122233455556667777766666555           334444444433322


Q ss_pred             HHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhcc-------chhHHHHHHHHHHH
Q 007604          428 IASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAP-------ESMKSLGTSYSMTT  500 (596)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~  500 (596)
                      ...+..                   +.+.+.+++..++.+++.+...+..++++.|.++       ++..|...|++++.
T Consensus       310 ~~~~~~-------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~  370 (444)
T PRK09669        310 LIFFIP-------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFA  370 (444)
T ss_pred             HHHHhC-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHH
Confidence            222211                   1244455666688999999999999999998875       34467889999999


Q ss_pred             HhHHHHHHhHHHhhhhcccc
Q 007604          501 LGVGNFLSSFLLSTVSDITK  520 (596)
Q Consensus       501 ~~ig~~lg~~~~~~i~~~~~  520 (596)
                      ..+|..+|+.+.+.+.+..+
T Consensus       371 ~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        371 IKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999887553

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.79  E-value=2.1e-16  Score=169.16  Aligned_cols=438  Identities=11%  Similarity=0.038  Sum_probs=249.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhh----hcchhHHHHHH-H
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEA----YLGRYWTFVIA-F  107 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grk~~~~~~-~  107 (596)
                      ++++.+....+..++++-...++++.|+ +++|.+..+.+.+..+..+...+.+|+.|+++||    + ||||.++++ .
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~   81 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGA   81 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHH
Confidence            4567777777778888777788888886 4799999999999999999999999999999995    7 999998875 5


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhh
Q 007604          108 FFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHK  187 (596)
Q Consensus       108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  187 (596)
                      ...+++.++++.+.++......       ...............++..+..++.....+...++++|.+|+++    +++
T Consensus        82 ~~~~~~l~ll~~~~~~~~~~~~-------~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~----~~~  150 (477)
T TIGR01301        82 ALVAFAVILIGFAADIGHLFGD-------NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA----RRT  150 (477)
T ss_pred             HHHHHHHHHHHhCchhhhhccc-------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh----HHH
Confidence            5555666666654321100000       00000000111334455556677888888889999999999885    124


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhc--ccc-------------ccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCh
Q 007604          188 LSFFNWWMFSIFFGTLLGNTVLVYI--QDD-------------VGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSP  252 (596)
Q Consensus       188 ~~~~~~~~~~~~ig~~l~~~~~~~l--~~~-------------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (596)
                      +.+.++.+...++|+.+|+.++++.  .+.             .+.+..|++.++..+++.++.....++.+..++++.+
T Consensus       151 ~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~  230 (477)
T TIGR01301       151 RIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI  230 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch
Confidence            6899999999999999999887764  111             1578899988877776666554443332211111000


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhh-hhhHH
Q 007604          253 FTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEE-TTQML  331 (596)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~l  331 (596)
                      ..+             .+..+                   +.+..+.+.  +          .+     +..++ -|.+.
T Consensus       231 ~~~-------------~~~~~-------------------~~~~~~~~~--~----------i~-----~~~~~mP~~m~  261 (477)
T TIGR01301       231 NSE-------------AAPPS-------------------KHGEEAFFG--E----------LF-----GAFKYLPRPVW  261 (477)
T ss_pred             hhh-------------ccccc-------------------ccchhhhHH--H----------HH-----HHHHHCCHHHH
Confidence            000             00000                   000000000  0          00     00111 13344


Q ss_pred             hHHHHHHHhhhhhhhhhcccceeeeee-ccccccCCCcccccc-----cccccchhHHHHHHHHHHhHHHHHhhhcccCC
Q 007604          332 AMIPILVATFVPSTMLAQINTLFVKQG-TTLDRAIGSSFKIPP-----ASLTGFVTLSMLVCVVLYDRCFVRITRRWTKN  405 (596)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-----~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~  405 (596)
                      +++.+.++.-+-|..+..+.+-+..+. ..-+..-.  -....     ......+.+...    +.+.+..++.||...+
T Consensus       262 ~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~--~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g~~  335 (477)
T TIGR01301       262 ILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQG--AKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWGAG  335 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcch--hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccc
Confidence            455555555555555544444332211 00011000  01111     111122233333    3333444445543111


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhh--hhhcc-CccccCCcceeh-hHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007604          406 PRGITLLQRMGIGLVIHIIIMVIASFTERYRLS--VAKDH-GIVEKGQQVPLT-IFIMLPQFVLMGTADAFLEVAKIEFF  481 (596)
Q Consensus       406 ~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~-~~~li~~~~l~g~~~~~~~~~~~~~~  481 (596)
                            ...-.++.++.+++++...+...-..+  ..+.+ ..+.    .+.. .+..+..+.+.|+..+..+..-++++
T Consensus       336 ------k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~  405 (477)
T TIGR01301       336 ------KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLP----PPTGIKASALIVFAILGIPLAITYSIPFALA  405 (477)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccC----cchhhHHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence                  122256777777777666654320000  00000 0000    0111 35566777889999999998889999


Q ss_pred             Hhhccc--hhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 007604          482 YDQAPE--SMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVA  559 (596)
Q Consensus       482 ~~~~P~--~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~  559 (596)
                      .+..|+  +..|..+|+.|.+-.+...+.....+.+....+              ++....+.+.++.++++.++.+...
T Consensus       406 s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g--------------~~~~~~~~~~gv~~~~aa~~~~~~~  471 (477)
T TIGR01301       406 SIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG--------------GGNLPAFVVGAVAAFVSGLLALILL  471 (477)
T ss_pred             HHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC--------------CCCeeHHHHHHHHHHHHHHHHHHhC
Confidence            999995  455999999999999999999887777543221              1223466776777777777777766


Q ss_pred             hcc
Q 007604          560 KFY  562 (596)
Q Consensus       560 ~~~  562 (596)
                      ++.
T Consensus       472 ~~~  474 (477)
T TIGR01301       472 PRP  474 (477)
T ss_pred             CCC
Confidence            554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.78  E-value=5.9e-16  Score=168.49  Aligned_cols=363  Identities=10%  Similarity=0.041  Sum_probs=208.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhh----hhcch-hHHHHHHHHHHHHHH
Q 007604           40 VYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAE----AYLGR-YWTFVIAFFFYLMGM  114 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Gr-k~~~~~~~~~~~i~~  114 (596)
                      +..+..++.+..+..+++.|+++.+|+++...|.+..+.-+...+..|+.|+++|    |+ || |+-++++.+..+++.
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHH
Confidence            4555666777777889999999999999999999999999999999999999999    66 98 455556666666666


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      .++......                  +.......+.+..++.+++.........++.+|..++.+     +|.+..++.
T Consensus        92 ~llf~~p~~------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~  148 (473)
T PRK10429         92 FLLFSAHLF------------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYP  148 (473)
T ss_pred             HHHHcCCCC------------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHH
Confidence            555322100                  001123334445556678888888888999999996554     489888887


Q ss_pred             HHHHHHHHHHhhhhhhhc----c---ccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhc
Q 007604          195 MFSIFFGTLLGNTVLVYI----Q---DDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKR  267 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~l----~---~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (596)
                      ....++|+.+++.+...+    .   +..+|+....+.++..++..+..+...++.. ++++.++.              
T Consensus       149 ~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~-~~~~~~~~--------------  213 (473)
T PRK10429        149 RFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY-SSDNQVSA--------------  213 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC-Cccccccc--------------
Confidence            777777766655443322    1   1234666555555544433333333222211 00000000              


Q ss_pred             CCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhh
Q 007604          268 NVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTML  347 (596)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~  347 (596)
                           +                       +++....+..               +.+.+.|.++..+...+.........
T Consensus       214 -----~-----------------------~~~~~~~~~~---------------~~~~~n~~~~~ll~~~~~~~~~~~~~  250 (473)
T PRK10429        214 -----E-----------------------GSHLTLKDIV---------------ALIYKNDQLSCLLGMALAYNIASNII  250 (473)
T ss_pred             -----c-----------------------ccCCCHHHHH---------------HHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence                 0                       0000000000               00001122222222222111222222


Q ss_pred             hcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 007604          348 AQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMV  427 (596)
Q Consensus       348 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~  427 (596)
                      .....++..+... +.      . ....+.....+..+++.++..++.+|+++|           +.+.++.++..++.+
T Consensus       251 ~~~~~y~~~y~~~-~~------~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-----------~~~~~~~~~~~~~~~  311 (473)
T PRK10429        251 NGFAIYYFTYVIG-DA------D-LFPYYLSYAGAANLVTLILFPRLVKSLSRR-----------ILWAGASIFPVLSCG  311 (473)
T ss_pred             hhheeeEEEEECC-CH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHH
Confidence            2222222222111 10      0 112233444566677777777766666655           334455555444443


Q ss_pred             HHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhcc-------chhHHHHHHHHHHH
Q 007604          428 IASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAP-------ESMKSLGTSYSMTT  500 (596)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~  500 (596)
                      ........                .+.+.+.+++..++.+++.+...+..+++..|.++       .+..|...|.+++.
T Consensus       312 ~~~~~~~~----------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~  375 (473)
T PRK10429        312 VLLLMGLA----------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMV  375 (473)
T ss_pred             HHHHHhcc----------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHH
Confidence            33221000                01234455566678889999999999999999976       44567799999999


Q ss_pred             HhHHHHHHhHHHhhhhccc
Q 007604          501 LGVGNFLSSFLLSTVSDIT  519 (596)
Q Consensus       501 ~~ig~~lg~~~~~~i~~~~  519 (596)
                      .-+|..+++.+.+.+.+..
T Consensus       376 ~K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        376 VKGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999988655

>PRK09848 glucuronide transporter; Provisional

Probab=99.78  E-value=1.2e-15  Score=164.91  Aligned_cols=362  Identities=8%  Similarity=0.044  Sum_probs=197.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhh---cchhHHH-HHHHHHHHHH
Q 007604           38 VVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAY---LGRYWTF-VIAFFFYLMG  113 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grk~~~-~~~~~~~~i~  113 (596)
                      -.+..+..++.+..+..+++.|+++.+|+++.+.|.+.+...+...+..++.|+++||.   +||||.. .++.+...+.
T Consensus        13 yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~   92 (448)
T PRK09848         13 YSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF   92 (448)
T ss_pred             hccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence            33455566666666778888999999999999999999999999999999999999994   3777755 4554444443


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      ..++.....  ...               ........++..++.+++.+...+...++..+..++.+     +|.+..++
T Consensus        93 ~~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~r~~~~~~  150 (448)
T PRK09848         93 SVLVFWVPT--DWS---------------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-----SRARLGAA  150 (448)
T ss_pred             HHHHHhCcC--CCC---------------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-----HHHHHHHH
Confidence            333321110  000               00122333445566788888888888888888877754     37776665


Q ss_pred             HHHH-----HHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcC
Q 007604          194 WMFS-----IFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRN  268 (596)
Q Consensus       194 ~~~~-----~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (596)
                      ..++     .+++..++|.+.+.........+..+. .+..+++.+..+......+++.++++......+..+       
T Consensus       151 r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-------  222 (448)
T PRK09848        151 RGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQ-------  222 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHHHH-------
Confidence            5443     345666667665543221111111111 111222222222111111111100000000000000       


Q ss_pred             CCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhh
Q 007604          269 VPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLA  348 (596)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~  348 (596)
                                                                            .+.+.|.+.......+.....+....
T Consensus       223 ------------------------------------------------------~l~~n~~f~~~~~~~~~~~~~~~~~~  248 (448)
T PRK09848        223 ------------------------------------------------------TLKRNRPLFMLCIGALCVLISTFAVS  248 (448)
T ss_pred             ------------------------------------------------------HHhCCchHHHHHHHHHHHHHHHHHHh
Confidence                                                                  00111222222211111111111122


Q ss_pred             cccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 007604          349 QINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVI  428 (596)
Q Consensus       349 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~  428 (596)
                      ....++.....+.+       ............+..+++.++..++.+|+++|           +.+.+|.++.+++.+.
T Consensus       249 ~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----------~~~~~g~~~~~i~~~~  310 (448)
T PRK09848        249 ASSLFYVRYVLNDT-------GLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-----------NTFLIGALLGTCGYLL  310 (448)
T ss_pred             hhheeeEeeecCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHH
Confidence            22222222211111       10011111112344555666666655544443           5567777777777655


Q ss_pred             HHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccch-------hHHHHHHHHHHHH
Q 007604          429 ASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPES-------MKSLGTSYSMTTL  501 (596)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~-------~rg~~~g~~~~~~  501 (596)
                      ..+..                   ..+.+.+++..++.++|+++..+..+++..+..|.+       .+|.++|++++.+
T Consensus       311 ~~~~~-------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~  371 (448)
T PRK09848        311 FFWVS-------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTR  371 (448)
T ss_pred             HHHcC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHH
Confidence            54421                   124455566678899999999999999999888754       4699999999999


Q ss_pred             hHHHHHHhHHHhhhhcccc
Q 007604          502 GVGNFLSSFLLSTVSDITK  520 (596)
Q Consensus       502 ~ig~~lg~~~~~~i~~~~~  520 (596)
                      .+|..+|+.+.+.+.+..+
T Consensus       372 klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        372 KCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            9999999999998876543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=6.8e-17  Score=160.02  Aligned_cols=420  Identities=11%  Similarity=0.057  Sum_probs=243.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 007604           45 ERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLS  124 (596)
Q Consensus        45 ~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~  124 (596)
                      +-.......+.+..-++...|.+..+..++......+..+++..+|.++|++ |||+.+.+..+...+...+-..+.   
T Consensus        89 ad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~sp---  164 (528)
T KOG0253|consen   89 ADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGASP---  164 (528)
T ss_pred             HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCCC---
Confidence            3334444555566667778899999999999999999999999999999998 999999888777766666555442   


Q ss_pred             CCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 007604          125 GLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLL  204 (596)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l  204 (596)
                                           |...+.+.|.+.|+|.|+ .|...++..|..|...      |....-.. ....+|.++
T Consensus       165 ---------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~  215 (528)
T KOG0253|consen  165 ---------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVF  215 (528)
T ss_pred             ---------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHH
Confidence                                 777888999999999999 8999999999999886      77776666 777899998


Q ss_pred             hhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhH
Q 007604          205 GNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLE  284 (596)
Q Consensus       205 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (596)
                      ...+.=.+...+||||.+........+.....++..+.-+..-.++++.+ ....+....+.++.+.|.-..+....++.
T Consensus       216 ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k-AletL~kiArmNg~qlplgvl~~s~~~~~  294 (528)
T KOG0253|consen  216 EALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK-ALETLHKIARMNGKQLPLGVLESSAIDRQ  294 (528)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH-HHHHHHHHHHhcCCCCCcceeeeehhhhh
Confidence            88776666677899988777665444444444444433333333344433 33344445555666666443333333222


Q ss_pred             HhhhcC----cccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhccccee------
Q 007604          285 YYAQRG----KYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLF------  354 (596)
Q Consensus       285 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------  354 (596)
                      ++.+..    ..+-+..+.....|.-.               +.-++++++..+..+...+.+|...-....++      
T Consensus       295 e~e~~~~~~~~~~a~ke~rg~~~nLls---------------p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c  359 (528)
T KOG0253|consen  295 EQEESDLDDSKSSAAKEVRGGTTNLLS---------------PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDAC  359 (528)
T ss_pred             hhhhhchhhhhhccccccccchHhhcC---------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCcc
Confidence            211111    11111111111111100               01122334444443344444443332111111      


Q ss_pred             ----eeeeccccc----cCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHH
Q 007604          355 ----VKQGTTLDR----AIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIM  426 (596)
Q Consensus       355 ----~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~  426 (596)
                          -..+.+++.    .....-++.+.++   ..+.-+-+..+..+++++++||           +.|...+++.++..
T Consensus       360 ~~~~r~~p~e~e~~~~c~~s~~~dYrdlli---tslaefPGlLIt~~iverlGRK-----------kTMal~l~~f~ifl  425 (528)
T KOG0253|consen  360 PLYNRFLPTELETRANCPLSVAKDYRDLLI---TSLAEFPGLLITGVIVERLGRK-----------KTMALSLILFGIFL  425 (528)
T ss_pred             ccchhcchhHHHhhhcCCccchhHHHHHHH---HHHhhCCchhHHHHHHHHhcch-----------hHHHHHHHHHHHHH
Confidence                001111111    0000001111111   2222223334455666668888           33666666666555


Q ss_pred             HHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHH
Q 007604          427 VIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNF  506 (596)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~  506 (596)
                      +.......                   -+  .+....+..-+.....+...+.|..|.+|+..|+++.|....++++|++
T Consensus       426 fll~~c~~-------------------rn--~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI  484 (528)
T KOG0253|consen  426 FLLTTCKT-------------------RN--AYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGI  484 (528)
T ss_pred             HHHHHhcC-------------------cc--hhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhh
Confidence            44433211                   01  1111123333444456677888999999999999999999999999999


Q ss_pred             HHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007604          507 LSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKA  566 (596)
Q Consensus       507 lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~  566 (596)
                      +.|++. ......                 ....-.++++..+++.+...++=.++++|.
T Consensus       485 ~~p~iA-~~~e~s-----------------~sl~i~vy~~~~ilagIavcffPiEtkGR~  526 (528)
T KOG0253|consen  485 FSPVIA-MRAELS-----------------TSLPIFVYGALFILAGIAVCFFPIETKGRS  526 (528)
T ss_pred             hhhHHH-HHhccc-----------------eeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence            999998 443211                 112234455555666665555555666654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.77  E-value=6.1e-16  Score=170.61  Aligned_cols=140  Identities=11%  Similarity=0.127  Sum_probs=125.7

Q ss_pred             hhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccc
Q 007604           62 DKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRK  141 (596)
Q Consensus        62 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (596)
                      +..+.+........+++.+|..+|+++.|.++||+ |||+++++++++..++.++.+++.                    
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~--------------------  169 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP--------------------  169 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence            45667788888999999999999999999999996 999999999999999999999885                    


Q ss_pred             cccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhh
Q 007604          142 ASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALG  221 (596)
Q Consensus       142 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~  221 (596)
                          +...+++.|++.|++.++.......+++|.++++.      |+.+.++ ......++.+++.+++++..  +||+.
T Consensus       170 ----~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~  236 (521)
T KOG0255|consen  170 ----NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL  236 (521)
T ss_pred             ----cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence                88999999999999999999999999999999997      9999999 77888888888888888887  79999


Q ss_pred             hHHHHHHHHHHHHH
Q 007604          222 YGLPALGLAIAIAI  235 (596)
Q Consensus       222 f~~~~~~~~~~~~~  235 (596)
                      +++..+..++.++.
T Consensus       237 ~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  237 FWIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888766555544

>PTZ00207 hypothetical protein; Provisional

Probab=99.77  E-value=3.1e-15  Score=163.54  Aligned_cols=168  Identities=7%  Similarity=-0.044  Sum_probs=124.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      +|..+...++.+.+.. ..|+.. .....+++++|++..+.+++.+... ....+.+++|+++||+ |||+++.++.+++
T Consensus        26 Rw~~lva~~~~~~~~g-~~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~  101 (591)
T PTZ00207         26 RFALLVLGAFCSICTS-FMYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVF  101 (591)
T ss_pred             hHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            3443443344433332 234333 4445688899999999999887744 3446777889999998 9999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .+|.++++++.+-.                  ...+.+.+++.|++.|+|.+...+.+...+.++||++       ||.+
T Consensus       102 ~iG~ll~ala~~~~------------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~-------RG~a  156 (591)
T PTZ00207        102 CLGTLLFALTFQEV------------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSN-------RGAV  156 (591)
T ss_pred             HHHHHHHHHHhccc------------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhh-------hHHH
Confidence            99999998863100                  0127888899999999999998888999999999843       9999


Q ss_pred             HHHHHHHHHHHHHH-hhhhhhhccccccchhhhHHHHHHH
Q 007604          191 FNWWMFSIFFGTLL-GNTVLVYIQDDVGWALGYGLPALGL  229 (596)
Q Consensus       191 ~~~~~~~~~ig~~l-~~~~~~~l~~~~g~~~~f~~~~~~~  229 (596)
                      .++...+..+|+++ +++..+++.  .+|+..|++.++..
T Consensus       157 ~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~  194 (591)
T PTZ00207        157 VAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFA  194 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHH
Confidence            99999999999975 555555554  35777676665443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.77  E-value=1.5e-22  Score=218.85  Aligned_cols=389  Identities=14%  Similarity=0.100  Sum_probs=222.6

Q ss_pred             hhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHH
Q 007604           70 KSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGT  149 (596)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (596)
                      +.++..+...++..+|.+++|+++||+ |||++++++.++..++.++.++++..                     .+...
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~  104 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY---------------------NNFWM  104 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc---------------------ccccc
Confidence            467889999999999999999999998 99999999999999999999887411                     16778


Q ss_pred             HHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccc---cccchhhhHHHH
Q 007604          150 FFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD---DVGWALGYGLPA  226 (596)
Q Consensus       150 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~---~~g~~~~f~~~~  226 (596)
                      +.++|++.|++.|+..+..+.++.|..|++.      |+...++.+....+|..++..+.-.+..   ..+||..+++.+
T Consensus       105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~  178 (451)
T PF00083_consen  105 LLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGA  178 (451)
T ss_pred             ccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccc
Confidence            8999999999999999999999999999987      9999999999999999888766544433   245999998887


Q ss_pred             HHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchh--hhh
Q 007604          227 LGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLR--FFN  304 (596)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  304 (596)
                      +..++.++.....                                ||+|+|+...++.+++++...+....+..+  ..+
T Consensus       179 ~~~l~~~~~~~~~--------------------------------pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~  226 (451)
T PF00083_consen  179 IPSLLVLLLRFFL--------------------------------PESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEE  226 (451)
T ss_pred             ccccccccccccc--------------------------------ccccceecccccccccccccccccccccccccccc
Confidence            6654443332222                                222333322222222222211111000000  000


Q ss_pred             --hhhhhc-CCCCCcccccchhhhhhhhHHhHHHHHHHhh-hhhhhhhcccceeeeeeccccccCCCccccccc-ccccc
Q 007604          305 --KAAVKT-GATNPWILCSVSQVEETTQMLAMIPILVATF-VPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPA-SLTGF  379 (596)
Q Consensus       305 --~~~~~~-~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~  379 (596)
                        ....+. .....|....++.. .+++.+..+.+..... ..+....++.+....       +.+    ..+. .....
T Consensus       227 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-------~~~----~~~~~~~~~~  294 (451)
T PF00083_consen  227 IKAEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFE-------NAG----ISNSFLATLI  294 (451)
T ss_pred             cccccccccccceeeeecccccc-cccccccccccccccccccccccccccccccc-------ccc----cccccccccc
Confidence              000000 00001111111110 1122222221111111 110011111111111       111    1111 12222


Q ss_pred             hhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhccCccccCCcceehhHH
Q 007604          380 VTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIAS-FTERYRLSVAKDHGIVEKGQQVPLTIFI  458 (596)
Q Consensus       380 ~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (596)
                      ..+..+++..+...+.|+++||.           .+..+.++++++.+.++ ...... +.           ....+...
T Consensus       295 ~~~~~~~~~~~~~~~~~~~GRr~-----------~~i~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~  351 (451)
T PF00083_consen  295 LGLVNFLGTLLAIFLIDRFGRRK-----------LLIIGLLLMAICSLILGIIFFLGV-SS-----------SSWWSILS  351 (451)
T ss_pred             ccccccccccccccccccccccc-----------cccccccccccccccccccccccc-cc-----------cccccccc
Confidence            23333333444446666777773           24455555555554443 111000 00           00012222


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchh
Q 007604          459 MLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLD  538 (596)
Q Consensus       459 li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~  538 (596)
                      +....+..........+..+.+..|.+|++.|+++.|+....+++++.+++.+.+.+....                +..
T Consensus       352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~----------------~~~  415 (451)
T PF00083_consen  352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL----------------GGW  415 (451)
T ss_pred             ceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------ccc
Confidence            2222222233333556777889999999999999999999999999999998877765311                112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 007604          539 YYYAFFAILNVLNFVFFLVVAKFYVYKAEVS  569 (596)
Q Consensus       539 ~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~  569 (596)
                      ..+++++++.++..++.+++.+++++++.+|
T Consensus       416 ~~~~i~~~~~~i~~i~~~~~lpET~g~~l~e  446 (451)
T PF00083_consen  416 GVFLIFAGVCLIAIIFVYFFLPETKGKTLEE  446 (451)
T ss_pred             ccchhhHHHHHHHHhheeEEEeeCCCCCHHH
Confidence            4577777777888888888888888777643

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.76  E-value=2.7e-16  Score=156.98  Aligned_cols=123  Identities=14%  Similarity=0.130  Sum_probs=108.9

Q ss_pred             HhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccc
Q 007604           60 LTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDC  139 (596)
Q Consensus        60 l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (596)
                      ..++.+.+..-.|.+-+.|.+.+.+.++..|.++||+ |||.++++|.+..++...+.+.+.                  
T Consensus        59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~------------------  119 (451)
T KOG2615|consen   59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR------------------  119 (451)
T ss_pred             hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH------------------
Confidence            3344555667889999999999999999999999999 999999999999999888888875                  


Q ss_pred             cccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccc
Q 007604          140 RKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD  214 (596)
Q Consensus       140 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~  214 (596)
                            +...+.++|++.|+.-|-. ..+.++++|.+++++      |+.+++....+..+|.++||+++|++..
T Consensus       120 ------~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  120 ------NFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ------HHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence                  6767777899999998764 667899999999987      9999999999999999999999999987

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.75  E-value=1.7e-15  Score=164.51  Aligned_cols=149  Identities=16%  Similarity=0.216  Sum_probs=118.9

Q ss_pred             HHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 007604           54 SNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCND  133 (596)
Q Consensus        54 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  133 (596)
                      .....++..++|-+ ....|+.+...++..+..++.|.++|.+ |||..++.+.++..+|.++++.+.            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            34456888889865 6677888999999999999999999998 999999999999999999999875            


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 007604          134 INSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQ  213 (596)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~  213 (596)
                                  +...+.++..+.|+|.|... .....++|..|.+.      |..+..+.....-+....++.++..+.
T Consensus       130 ------------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~  190 (599)
T PF06609_consen  130 ------------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFA  190 (599)
T ss_pred             ------------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence                        78889999999999977665 45566899999875      776666555544444445666666666


Q ss_pred             ccccchhhhHHHHHHHHHHHHH
Q 007604          214 DDVGWALGYGLPALGLAIAIAI  235 (596)
Q Consensus       214 ~~~g~~~~f~~~~~~~~~~~~~  235 (596)
                      ...+|||.|++.++...++++.
T Consensus       191 ~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  191 AHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             cCCCcchHHHHHHHHHHHHHHH
Confidence            5678999999998765555544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.75  E-value=4.2e-15  Score=157.09  Aligned_cols=378  Identities=12%  Similarity=0.136  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhh
Q 007604           43 VFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVS  122 (596)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~  122 (596)
                      ++..+.+-...++++.|++ +.|+|..|.|.+.+...+..++.+++.|+++||...+||.+.+..++.++...+..... 
T Consensus        12 f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~-   89 (400)
T PF03825_consen   12 FLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS-   89 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3333333345588899998 56899999999999999999999999999999984577887777666666554444432 


Q ss_pred             ccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 007604          123 LSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGT  202 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  202 (596)
                                             +.+.+++..++..+......|...++..+...++        +.-++....-.++|.
T Consensus        90 -----------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~--------~~~YG~iRlwGSiGf  138 (400)
T PF03825_consen   90 -----------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDR--------GKDYGRIRLWGSIGF  138 (400)
T ss_pred             -----------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc--------cCCCCcchhhhhHHH
Confidence                                   4555556666677777777777777777776632        222333333334444


Q ss_pred             HHhhhh-hhhccccc---cchhhhHHHHHHHHHHHHHHHhcCCceec-cCCCCChhHHHHHHHHHHHHhcCCCCCCCchh
Q 007604          203 LLGNTV-LVYIQDDV---GWALGYGLPALGLAIAIAIFLAGTPFYRH-KKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQE  277 (596)
Q Consensus       203 ~l~~~~-~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (596)
                      +++... .+.+....   +....+++.+...++.....+. .|+.+. ++++++..+...                    
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~~~~~--------------------  197 (400)
T PF03825_consen  139 IVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVKKLLG--------------------  197 (400)
T ss_pred             HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCcccccc--------------------
Confidence            444222 12222111   2234455554433222221222 222221 111100000000                    


Q ss_pred             hhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeee
Q 007604          278 LYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQ  357 (596)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (596)
                                               .|..               +-.++++.+.-.+..++........+.....++...
T Consensus       198 -------------------------~~~~---------------~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~  237 (400)
T PF03825_consen  198 -------------------------LDAL---------------KLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQEL  237 (400)
T ss_pred             -------------------------hHHH---------------HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                                     0000               000111111111111122222222222111121111


Q ss_pred             eccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007604          358 GTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRL  437 (596)
Q Consensus       358 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~  437 (596)
                      . ...       ....+...++..+.-+..-    ...+++.+|       .+..+.+.++.+..++=...++....   
T Consensus       238 g-g~~-------~~~~g~~~~l~~~aEi~~f----~~~~~~~~r-------~g~~~ll~~a~~~~~vR~~l~a~~~~---  295 (400)
T PF03825_consen  238 G-GYS-------GSTIGILWALGVVAEIPFF----FFSGRFLKR-------FGIKWLLLLALVAYAVRWLLYAYFSD---  295 (400)
T ss_pred             c-cch-------hhHHHHHHHHHHHHHHHHH----HHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence            1 000       0001111222222222222    233444555       45667788888887777777665421   


Q ss_pred             hhhhccCccccCCcceehh--HHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHH-HHhHHHHHHhHHHhh
Q 007604          438 SVAKDHGIVEKGQQVPLTI--FIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMT-TLGVGNFLSSFLLST  514 (596)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~--~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~ig~~lg~~~~~~  514 (596)
                                     +...  ...+...++.|+..+....+...|+.+.+|++.|++++|+++. ..++|..+|..+.|.
T Consensus       296 ---------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  296 ---------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             ---------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                           1111  1122234578999999999999999999999999999999886 578999999999999


Q ss_pred             hhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007604          515 VSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKF  561 (596)
Q Consensus       515 i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  561 (596)
                      +.+..+..+.          ..+..++.+.+++.++..++++++.|+
T Consensus       361 l~~~~g~~~~----------~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  361 LYDAFGARGM----------FDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHhcchhh----------hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9875431111          112345666666777777777776554

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.6e-16  Score=159.51  Aligned_cols=149  Identities=17%  Similarity=0.134  Sum_probs=136.2

Q ss_pred             hcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcccccc
Q 007604           63 KLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKA  142 (596)
Q Consensus        63 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (596)
                      .++-++++.|++...+.+.+.+..++.|.+.||+ |+|-.+++|++++...+++.++..                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            4667889999999999999999999999999998 999999999999999999999875                     


Q ss_pred             ccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhh
Q 007604          143 STLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGY  222 (596)
Q Consensus       143 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f  222 (596)
                         ++++++++|.++|+|.++...+..++++|.||+++     +|++++|+.-.++.+|..+||..+|.+.+..|++.+|
T Consensus       158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF  229 (464)
T KOG3764|consen  158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF  229 (464)
T ss_pred             ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence               78899999999999999999999999999999997     6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 007604          223 GLPALGLAIAIAIFLAGTP  241 (596)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~  241 (596)
                      .+.++..++-..+-++..+
T Consensus       230 lVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  230 LVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             HHHHHHHHHHHHHHHheeC
Confidence            9988877666655554443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.74  E-value=1.6e-15  Score=158.62  Aligned_cols=156  Identities=9%  Similarity=-0.007  Sum_probs=136.0

Q ss_pred             HHHHHHHHHhhhcCCChhh-hhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 007604           52 ISSNLVMYLTDKLHHGTVK-SANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPP  130 (596)
Q Consensus        52 ~~~~l~~yl~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  130 (596)
                      ..+++..|+.+++|++.+| .|.+.+++..++.++.+++|+++||+ |.|+++.++.+...+..++.+++.         
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~---------  113 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT---------  113 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH---------
Confidence            4566777999999999999 99999999999999999999999998 999999999999999999998875         


Q ss_pred             CCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 007604          131 CNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLV  210 (596)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~  210 (596)
                                     +...+.+.|++.|++.|... +...++..++|+++      |+++.++...+.++|.++++++++
T Consensus       114 ---------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~q  171 (511)
T TIGR00806       114 ---------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQ  171 (511)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           67889999999999999999 99999999999986      999999999999999999999999


Q ss_pred             hccccccchhhhHH---HHHHHHHHHHHHHhcC
Q 007604          211 YIQDDVGWALGYGL---PALGLAIAIAIFLAGT  240 (596)
Q Consensus       211 ~l~~~~g~~~~f~~---~~~~~~~~~~~~~~~~  240 (596)
                      + ...+||+.-+.+   +.....+++++.++++
T Consensus       172 l-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       172 L-LVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             H-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8 446788865544   4444555555544443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.73  E-value=3.6e-16  Score=174.91  Aligned_cols=203  Identities=15%  Similarity=0.160  Sum_probs=149.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      ++.+...+....+......++.......++++++++..+.|++.+.+.+++.++.++.|+++||+ ||||.+.++.++++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~  109 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence            34343444434455555566777777788999999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhccC-C---------------CCCCCCCCCCc---------cccccc--cchhHHHHHHHHHHHHhccCc
Q 007604          112 MGMIVLALSVSLSG-L---------------KPPPCNDINSQ---------DCRKAS--TLQLGTFFAALYTLAVGTGGT  164 (596)
Q Consensus       112 i~~~~~~~~~~~~~-~---------------~~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~~l~g~g~g~~  164 (596)
                      +|.++.++...+.. +               ...-|..-..+         .|....  ......++++|+++|+|.+..
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            99999887642210 0               01112100000         111111  113567789999999999999


Q ss_pred             ccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccc----------------------cchhhh
Q 007604          165 KPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDV----------------------GWALGY  222 (596)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~----------------------g~~~~f  222 (596)
                      .+...+++.|.+|+++      |+.+.++++.+..+|.++|+++++++.+.+                      +|+..|
T Consensus       190 ~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~F  263 (633)
T TIGR00805       190 FPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGF  263 (633)
T ss_pred             hhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHH
Confidence            9999999999999987      999999999999999999999998876432                      277778


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 007604          223 GLPALGLAIAIAIFLAGTP  241 (596)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~  241 (596)
                      ++.+++.++..+.++...+
T Consensus       264 li~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       264 LICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             HHHHHHHHHHHHHHHhCcc
Confidence            7777655554444444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.73  E-value=5.9e-16  Score=167.70  Aligned_cols=420  Identities=13%  Similarity=0.102  Sum_probs=257.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGIS---SNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~---~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      -|.+++..|..++..+++.   ..+-..+.++++.+..+++|+.++......+..|+.+.+.||+ |.|.+.+++.++..
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence            4556666666666666654   3344567789999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHH-HHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAA-LYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      +|.++.++++                        +.+.+++. -++.|+|.|+........++.+|+++       |+.+
T Consensus       123 ~g~~lssF~~------------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA  171 (509)
T KOG2504|consen  123 LGLLLSSFAT------------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALA  171 (509)
T ss_pred             HHHHHHHHHh------------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHH
Confidence            9999999986                        56666654 45689999999999999999888865       9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHH---HHHHHHHhc
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAK---VIVAAIRKR  267 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  267 (596)
                      .++-..+..+|..+-|.+..++.+.+|||..+++-+.+.+-........+|...+.++.+.  ++...   .....-+..
T Consensus       172 ~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~--~~~~~~~~~~~~~~~~~  249 (509)
T KOG2504|consen  172 TGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE--KDLRNSAASVESTPKPV  249 (509)
T ss_pred             HhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh--hhhcccccccccccccc
Confidence            9988888888888888888999999999999988776655444444555553333222200  00000   000000000


Q ss_pred             CCCCCCCchhhh---hhhhHHhhhcCcccccCCcchh---hhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhh
Q 007604          268 NVPLPIDPQELY---ELDLEYYAQRGKYRIGSTQNLR---FFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATF  341 (596)
Q Consensus       268 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~  341 (596)
                      +...++......   ..++. +.++...+.......+   .+|.                .-.+++..++..+...+..+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~----------------~ll~~~~fl~~~~~~~~~~~  312 (509)
T KOG2504|consen  250 ELRISERDSGLKKLSLSNLA-TLKRGPDKWRNSPLQAFLSMLDL----------------SLLKDPKFLLLALSNLFAYL  312 (509)
T ss_pred             ccccccCCCCCCcccccchh-hhhhCCccccccchhhhhhhhhH----------------HHHcCchHHHHHHHHHHHHH
Confidence            000000000000   00000 0000000000000000   0000                01112111222222222233


Q ss_pred             hhhhhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHH
Q 007604          342 VPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVI  421 (596)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l  421 (596)
                      .+.......+.+....  ..+       ....+...++..+..+++.++.+++.|+-..         +......++++.
T Consensus       313 g~~~p~~~l~~~~~~~--g~~-------~~~aa~l~Siigi~~i~gRi~~G~laD~~~~---------~~~~~~~~~ll~  374 (509)
T KOG2504|consen  313 GFNVPFVYLPSYAKSL--GLS-------SNDAAFLLSIIGVSDIIGRIILGLLADKPGI---------RALVLFLLTLLI  374 (509)
T ss_pred             HHHHHHHHHHHHHhhc--CCC-------hhhhHHHHHHHHHhhhhhhhhhhhhcCcccc---------chHHHHHHHHHH
Confidence            2222222222221111  111       1123344455566666777777775544432         233445666666


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHH
Q 007604          422 HIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTL  501 (596)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~  501 (596)
                      .+++.++..+.                     .+.+.++...+++|+..+.........+.+..+.+.-..+.|+....+
T Consensus       375 ~gl~~~~~p~~---------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~  433 (509)
T KOG2504|consen  375 AGLARLFLPFA---------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQ  433 (509)
T ss_pred             HHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence            76666555443                     355677778899999999888888889999999999999999999999


Q ss_pred             hHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 007604          502 GVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVA  559 (596)
Q Consensus       502 ~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~  559 (596)
                      +++..+|+.+.+.+.+.++               .|...|+..++..+++...+++..
T Consensus       434 gi~~l~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  434 GIGALVGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHcCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999998876552               244456666666666655544443

>PRK11462 putative transporter; Provisional

Probab=99.73  E-value=1.1e-14  Score=157.66  Aligned_cols=171  Identities=8%  Similarity=0.060  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhh---cchhHHHH-HHHHHHHHHHH
Q 007604           40 VYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAY---LGRYWTFV-IAFFFYLMGMI  115 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grk~~~~-~~~~~~~i~~~  115 (596)
                      +..+..++.+..+..++..|.++.+|+++..+|.+..+.-+...+.-|+.|+++||.   +||||..+ ++.+..+++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            445555666666778899999999999999999999999999999999999999973   48876655 45566666665


Q ss_pred             HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 007604          116 VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWM  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  195 (596)
                      ++...+   ...               .......+.+..++..++..+......++.+|..++.+     +|.+..++..
T Consensus        96 llf~~p---~~s---------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~  152 (460)
T PRK11462         96 LAYSTP---DLS---------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRF  152 (460)
T ss_pred             HHHhCC---CCC---------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHH
Confidence            554322   110               01123334455556778888888888999999999765     5999999999


Q ss_pred             HHHHHHHHHhhhhhhhcccc-------ccchhhhHHHHHHHHHHH
Q 007604          196 FSIFFGTLLGNTVLVYIQDD-------VGWALGYGLPALGLAIAI  233 (596)
Q Consensus       196 ~~~~ig~~l~~~~~~~l~~~-------~g~~~~f~~~~~~~~~~~  233 (596)
                      .+.++|..+++.+...+...       .||+....+.++..++..
T Consensus       153 ~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        153 VLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            99999888776664433221       356665555544433333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.73  E-value=1.3e-15  Score=158.56  Aligned_cols=390  Identities=8%  Similarity=0.019  Sum_probs=217.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH-
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL-  111 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~-  111 (596)
                      ++.+......++..+++-...++++.+++++.|++.+++|.+.++..+...+.+|+.|.++||. |.||-+++...+.. 
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence            4566666666665566555679999999999999999999999999999999999999999998 96666554433222 


Q ss_pred             -HHHHHH-HHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          112 -MGMIVL-ALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       112 -i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                       .+-... ...+.+.                    .|   ++++.++.++..+....+..+.. |.+-++.   .++.+-
T Consensus        86 l~~pff~~v~~pll~--------------------~n---~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~---sr~~~f  138 (412)
T PF01306_consen   86 LFGPFFIYVFGPLLQ--------------------SN---FWLGAIIGGIYLGLVFNAGVPLS-EAYAERV---SRRNGF  138 (412)
T ss_dssp             TCHHHHHHTHHHHHH--------------------TT----HHHHHHTTTTTTTTTTTHHHHH-HHHHHHH---HHHHSS
T ss_pred             HHHHHHHHHHHHHHH--------------------HH---HHHHHHHHHHHHHHHHcccchHH-HHHHHHH---HHHhcC
Confidence             222221 1211000                    01   22333333343333333332222 3222221   112233


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCC
Q 007604          190 FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNV  269 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (596)
                      =+|-......+|.+++..++|++.+ .+.+..||++....++..++.+..++..+++.+..+...               
T Consensus       139 eYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~---------------  202 (412)
T PF01306_consen  139 EYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG---------------  202 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS---------------
T ss_pred             CcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc---------------
Confidence            3444555668888889889998876 456778887765544444444444433222111100000               


Q ss_pred             CCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHh-hhhhhhhh
Q 007604          270 PLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVAT-FVPSTMLA  348 (596)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~-~~~~~~~~  348 (596)
                                               .+++....-|.                .++.+.|++.....+.... ..+....+
T Consensus       203 -------------------------~~~~~~~~~~~----------------~~l~k~~~fw~~~l~v~g~~~~Y~vfdq  241 (412)
T PF01306_consen  203 -------------------------AKKDKVSLKDV----------------LSLFKMRNFWFFVLFVIGVAAIYDVFDQ  241 (412)
T ss_dssp             -------------------------S------HHHH----------------HHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------cCCCCCcHHHH----------------HHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence                                     00000000000                0111123333333333333 34444445


Q ss_pred             cccceeeeeeccccccCCCcccccccccc---cchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHH
Q 007604          349 QINTLFVKQGTTLDRAIGSSFKIPPASLT---GFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIII  425 (596)
Q Consensus       349 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~  425 (596)
                      |.+.++..+...  .      +..+..+.   ++..+.-++...+..++..|++           +.+.+.++..++.+=
T Consensus       242 qf~~y~~~~f~~--~------~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig-----------~k~~Lllag~i~~iR  302 (412)
T PF01306_consen  242 QFPIYFASFFQS--A------GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIG-----------AKNLLLLAGVIMAIR  302 (412)
T ss_dssp             HHHHHHHHTSSS--H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc--c------ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcC-----------hHhHHHHHHHHHHHH
Confidence            544444332111  1      11122222   2223333333334444444444           445577777777777


Q ss_pred             HHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHH-HHHHhHH
Q 007604          426 MVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYS-MTTLGVG  504 (596)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~ig  504 (596)
                      .+..++.                     .+++++++.-.+.++-..+...+..-|+.+.+|++..++...+. ++..++|
T Consensus       303 i~~~~~~---------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~  361 (412)
T PF01306_consen  303 IIGSGFA---------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIG  361 (412)
T ss_dssp             HHHHHT-----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHH
T ss_pred             HHHHhhh---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence            6666664                     36677777889999999999999999999999999999999985 6889999


Q ss_pred             HHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 007604          505 NFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYV  563 (596)
Q Consensus       505 ~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  563 (596)
                      ..+.+.+.|.+++..                +++..|++++++.+...++..+..++.+
T Consensus       362 ~~i~s~~~G~lyd~~----------------G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  362 IIILSPLAGYLYDRI----------------GFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHhhhHHhhHhhc----------------CcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            999999999998743                3456788888887777777666655433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.73  E-value=5.4e-15  Score=160.34  Aligned_cols=380  Identities=12%  Similarity=0.071  Sum_probs=216.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcc-----hhHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLG-----RYWTFVIAFFF  109 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rk~~~~~~~~~  109 (596)
                      +..+....+...+. +.+...++.++++++|+++++.+...+...+...+-++ +|.++||+ +     ||+.++++.++
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence            34445456677777 76777888889999999999999999988888877666 99999998 7     77777777655


Q ss_pred             HH-HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhh
Q 007604          110 YL-MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL  188 (596)
Q Consensus       110 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  188 (596)
                      .. ++...++...                       .......+.+++.+++.+...++..++..|..+ +++   ..++
T Consensus       105 ~~~~~~~~l~~~~-----------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~  157 (468)
T TIGR00788       105 GSAILYGLLPGKV-----------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGP  157 (468)
T ss_pred             HHHHHHHhccccc-----------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCC
Confidence            42 2222221111                       123333346788999999999999999999999 431   1234


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcC
Q 007604          189 SFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRN  268 (596)
Q Consensus       189 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (596)
                      ...++.+...++|.++|+.++|++.+..+|+..|++.++..++..+..++.+++.....++.+.......          
T Consensus       158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~----------  227 (468)
T TIGR00788       158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM----------  227 (468)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh----------
Confidence            4556666677899999999999999989999999988876665544333333321001111000000000          


Q ss_pred             CCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhh-hhhhh
Q 007604          269 VPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFV-PSTML  347 (596)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~-~~~~~  347 (596)
                      .  ..........               .+.  ..+.          +      ...+.+.+...+.   +.++ +....
T Consensus       228 ~--~~~~~~~~~~---------------~~~--~~~l----------~------~~l~~~~i~~~l~---fifl~~~~~~  269 (468)
T TIGR00788       228 A--LLTLGVLANV---------------KVQ--ILGL----------R------GAIQLLEIAKPLI---FIFLSYANLP  269 (468)
T ss_pred             h--hhhhhHHHHH---------------HHH--HHHH----------H------HHHhcHHHHHHHH---HHHHHHhhcC
Confidence            0  0000000000               000  0000          0      0000111111111   1111 11111


Q ss_pred             hcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 007604          348 AQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMV  427 (596)
Q Consensus       348 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~  427 (596)
                      ......+..+..    .+| ......+.......++.+++..+.++    +.+|       .+..+.+.++.++.+++.+
T Consensus       270 ~~~~~~f~~~~~----~lG-~s~~~~G~~~~~~~v~~i~g~~~~~~----~~~~-------~~~r~~l~~~~~l~~~~~~  333 (468)
T TIGR00788       270 GASGSVFCATTQ----CLP-GGPSFSGMSKVVGNLGSLCGVGGYDR----FLKT-------FPYRLLFGVTTLLYTLSSL  333 (468)
T ss_pred             CCCceeEEEEcc----cCC-CCcchhhhHHHHHHHHHHHHHHHHHH----HHhh-------CCHHHHHHHHHHHHHHHHh
Confidence            111122221111    121 00112233344445555555555555    4444       3444666777776666553


Q ss_pred             HHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHH
Q 007604          428 IASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFL  507 (596)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l  507 (596)
                      ...+... +.+.  ..+        ..+.++.+...++.+++.++...+...++.+.+|++.+|+..|+.+....+|..+
T Consensus       334 ~~~~l~~-~~~~--~~g--------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v  402 (468)
T TIGR00788       334 FDLILVK-RWNL--AFG--------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSV  402 (468)
T ss_pred             Cceeeee-cccc--ccC--------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHH
Confidence            3221100 0000  000        0112234445678888888888889999999999999999999999999999999


Q ss_pred             HhHHHhhhhccc
Q 007604          508 SSFLLSTVSDIT  519 (596)
Q Consensus       508 g~~~~~~i~~~~  519 (596)
                      ++.+.+.+.+..
T Consensus       403 ~~~~gg~l~~~~  414 (468)
T TIGR00788       403 SGFLGVLLMETI  414 (468)
T ss_pred             HHHHHHHHHHHc
Confidence            999888887644

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.72  E-value=2.2e-14  Score=152.20  Aligned_cols=178  Identities=12%  Similarity=-0.045  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhH--HHHHHHHHHHhhhhh-HHHhhhhcchhHHHHHHHHHH-
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANN--VTNWGGTIWVTPIFG-AGVAEAYLGRYWTFVIAFFFY-  110 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~--~~~~~~~~~~~~~~~-G~laD~~~Grk~~~~~~~~~~-  110 (596)
                      ...+....+.+.+.+..+.+.+|.|++ +.|.+.++.|..  .........+.+++. ++.+||+ ||||..++.+.+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            344555566666666667788888887 569999999997  355567776666666 6689997 9999976665332 


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      ......++...  +                  .......++....+.++..+...+...++..|..++++      ++..
T Consensus        81 ~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~  134 (390)
T TIGR02718        81 SACLASLALVG--P------------------DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKG  134 (390)
T ss_pred             HHHHHHHHcCC--c------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHH
Confidence            21222222110  0                  00012223333444555666666666777777776664      6777


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcC
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGT  240 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  240 (596)
                      .+....+..+|..+|+...+++.+..|||.+|++.++..++..+..+..+
T Consensus       135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            77777788899999998888999889999999988876655554444433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.71  E-value=2.7e-15  Score=151.90  Aligned_cols=151  Identities=14%  Similarity=0.070  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMI  115 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  115 (596)
                      +.++..-|+...........+...+++.++++..|++.+..++..++.+++++.|++.+|+ |+|+.++.++.++++|..
T Consensus        15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            3334444444444455667788889999999999999999999999999999999999998 999999999999999998


Q ss_pred             HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 007604          116 VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWM  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  195 (596)
                      +..-+++.                     .++..+..+.++.+.|.+...+++.++++...|+++      -..-.++.+
T Consensus        94 lF~pAa~~---------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q  146 (422)
T COG0738          94 LFWPAASS---------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQ  146 (422)
T ss_pred             HHhhhhhh---------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHH
Confidence            88644321                     267788889999999999999999999999999975      455567778


Q ss_pred             HHHHHHHHHhhhhhhhccc
Q 007604          196 FSIFFGTLLGNTVLVYIQD  214 (596)
Q Consensus       196 ~~~~ig~~l~~~~~~~l~~  214 (596)
                      ....+|+++||.+++++..
T Consensus       147 ~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         147 AFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HhhhhHHHHHHHHHHHHHH
Confidence            8889999999999988765

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.70  E-value=1.5e-15  Score=163.33  Aligned_cols=356  Identities=12%  Similarity=0.103  Sum_probs=225.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhh----hhcchhHHHH-HHHHHHHHHHHHH
Q 007604           43 VFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAE----AYLGRYWTFV-IAFFFYLMGMIVL  117 (596)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Grk~~~~-~~~~~~~i~~~~~  117 (596)
                      +...+.......+++.|+++.+|+++...+.+..+..+...+..|+.|.++|    |+ ||||-.+ ++....+++..++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence            4444455556678899999999999999999999999999999999999999    77 8776555 5667777777666


Q ss_pred             HHHhhcc-CCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHH
Q 007604          118 ALSVSLS-GLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMF  196 (596)
Q Consensus       118 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  196 (596)
                      ....  | .+               ........+.+..++..++.........++.+|..++++     +|.+..++...
T Consensus        90 f~~~--p~~~---------------~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~  147 (428)
T PF13347_consen   90 FSPP--PAGL---------------SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMI  147 (428)
T ss_pred             hccc--cchh---------------hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHH
Confidence            5431  0 00               001123334566667788989999999999999999765     49999999888


Q ss_pred             HHHHHHHHhhhhhhhcccc-------ccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCC
Q 007604          197 SIFFGTLLGNTVLVYIQDD-------VGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNV  269 (596)
Q Consensus       197 ~~~ig~~l~~~~~~~l~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (596)
                      ...+|..+...+.+.+.+.       .+|++..++.++..++..++.....|+...+.+++++..               
T Consensus       148 ~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~---------------  212 (428)
T PF13347_consen  148 FSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKI---------------  212 (428)
T ss_pred             HHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccccc---------------
Confidence            8888887555555544321       158877777766555554444443333111111000000               


Q ss_pred             CCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhc
Q 007604          270 PLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQ  349 (596)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~  349 (596)
                                               +..+.                ++     ...+.|.+...+...+.....+.....
T Consensus       213 -------------------------~~~~~----------------~~-----~~~~nr~~~~l~~~~~~~~~~~~~~~~  246 (428)
T PF13347_consen  213 -------------------------SLRDS----------------LR-----SLFRNRPFRILLLAFFLQWLAFALMNT  246 (428)
T ss_pred             -------------------------ccccc----------------hh-----hhcccchHHHHHHHHHHHHhhhhhhhh
Confidence                                     00000                00     001112222222221111111111111


Q ss_pred             ccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 007604          350 INTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIA  429 (596)
Q Consensus       350 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~  429 (596)
                      ...++....      ++.  +...+.+.....+..++..|+..++.+|+++|           +.+..+.++.+++.++.
T Consensus       247 ~~~y~~~~v------l~~--~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----------~~~~~~~~~~~~~~~~~  307 (428)
T PF13347_consen  247 FLPYYFTYV------LGN--EGLISIFMLIFFVASIVGSPLWGRLSKRFGKK-----------KVYIIGLLLAALGFLLL  307 (428)
T ss_pred             HHHHHHHHH------hcC--chhhHHHHHHHHHHHHHHHHHHHHHHHHccce-----------eehhhhHHHHHHHHHHH
Confidence            111221111      110  11122334456677778888888877777666           33677777787777776


Q ss_pred             HHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhcc-------chhHHHHHHHHHHHHh
Q 007604          430 SFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAP-------ESMKSLGTSYSMTTLG  502 (596)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~  502 (596)
                      .+..                   ..+.+++++..++.|++.+...+..+++..|..+       ++..|...|++++..-
T Consensus       308 ~~~~-------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k  368 (428)
T PF13347_consen  308 FFLG-------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIK  368 (428)
T ss_pred             HHHH-------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhH
Confidence            6553                   1366778888899999999999999999998886       3446999999999999


Q ss_pred             HHHHHHhHHHhhhhcccc
Q 007604          503 VGNFLSSFLLSTVSDITK  520 (596)
Q Consensus       503 ig~~lg~~~~~~i~~~~~  520 (596)
                      ++..+++.+.+.+....+
T Consensus       369 ~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  369 IGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            999999999998876543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.70  E-value=5.6e-17  Score=165.51  Aligned_cols=434  Identities=14%  Similarity=0.071  Sum_probs=229.7

Q ss_pred             CCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhc-------CCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcch
Q 007604           30 GGWRACSFVVVYEVF---ERMAYHGISSNLVMYLTDKL-------HHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGR   99 (596)
Q Consensus        30 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~yl~~~l-------g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr   99 (596)
                      ..|+.+-.+.+.-+.   .....+.+....+.+-....       +.++.-.+.+..+..++.++|+++.||++|++ ||
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GR  113 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GR  113 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cc
Confidence            356655544443332   24444444444444322222       24566777888899999999999999999998 99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcccccccc-chhHHHHHHHHHHHHhccCcccchhhhhhccCCC
Q 007604          100 YWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKAST-LQLGTFFAALYTLAVGTGGTKPNILTIAADQFDE  178 (596)
Q Consensus       100 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~  178 (596)
                      |+++...+++..+++++++++...                  +.+ .-+..+...|+++|+|.|+-.|...+..+|..-+
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~~------------------~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~  175 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVGT------------------TSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANK  175 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCCC------------------CCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhh
Confidence            999999999999999976655311                  111 2566788899999999999999999999998877


Q ss_pred             CChhhhhhhhhhHHHHHHHHHH----HHHHhhhhhhhccc-----------cccchhhhHHHHHHHHHHHHHHHhcCCce
Q 007604          179 FEPKEKAHKLSFFNWWMFSIFF----GTLLGNTVLVYIQD-----------DVGWALGYGLPALGLAIAIAIFLAGTPFY  243 (596)
Q Consensus       179 ~~~~~~~~r~~~~~~~~~~~~i----g~~l~~~~~~~l~~-----------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  243 (596)
                      +.      ||...+........    |++++-++.+-.-.           ..-||..|.+.++..++.+..-+.+++.-
T Consensus       176 ~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~  249 (538)
T KOG0252|consen  176 KT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETA  249 (538)
T ss_pred             cc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcch
Confidence            64      88777654444444    44444433332211           12399998887765554443322222211


Q ss_pred             eccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchh
Q 007604          244 RHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQ  323 (596)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (596)
                      +++.-..       +-...+..+...  +.+.    ..++.+.+  .....+.++.++             .|   ....
T Consensus       250 ~Y~al~~-------~~~~~a~~d~~k--~~~~----~~~~~~~~--~~~~~~~~~~~~-------------~F---~~~f  298 (538)
T KOG0252|consen  250 RYTALVS-------KKLKQAAGDMKK--VLSV----DIEAESTA--ESDVPPPSNSFG-------------LF---SRLF  298 (538)
T ss_pred             hHHHHhh-------cCHhhhhhcccc--cccc----ccchhhcc--ccCCCCcccccc-------------hH---HHHH
Confidence            1110000       000111111000  0000    00000000  000000000000             00   0000


Q ss_pred             hh-hhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCccccccc----------ccccchhHHHHH-HHHHH
Q 007604          324 VE-ETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPA----------SLTGFVTLSMLV-CVVLY  391 (596)
Q Consensus       324 v~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~i-~~~l~  391 (596)
                      .+ .-+.++.      ....++.+-...+++-+.|..-.+ ++|   -.+..          ..+.+.++...+ +.++.
T Consensus       299 ~~~hg~~Llg------t~~~WFllDiafy~~nL~~s~I~~-~ig---~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~t  368 (538)
T KOG0252|consen  299 LRWHGKHLLG------TAGTWFLLDIAFYGQNLFQSVIFS-AIG---VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFT  368 (538)
T ss_pred             HHHHHHHHHH------HHHHHHhhhhhhhccccHHHHHHH-hhc---cCCCcchHHHHHHHHHHHHHHHHHccCCceeEE
Confidence            00 0111111      111122222222222222211101 111   01111          111111111111 22445


Q ss_pred             hHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHH-HHHHHHHH
Q 007604          392 DRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQ-FVLMGTAD  470 (596)
Q Consensus       392 ~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~l~g~~~  470 (596)
                      ..++|+++||           ..-..|++++.+.+++++....+.                 .+...+++. .+.+.++.
T Consensus       369 v~~id~iGRk-----------~iq~~GF~~~~i~~~~~~~~y~~~-----------------~~~~Gf~v~y~l~~ff~N  420 (538)
T KOG0252|consen  369 VYFIDIIGRK-----------YIQLMGFFIMTIFFFVIAGPYNQL-----------------ENTIGFVVLYSLTFFFGN  420 (538)
T ss_pred             EEEeehhhhH-----------HHHHhhHHHHHHHHHHHcCCcccc-----------------cccCceeehHHHHHHHHh
Confidence            5566777777           336668888887777766542110                 011112222 23334445


Q ss_pred             HHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHH
Q 007604          471 AFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVL  550 (596)
Q Consensus       471 ~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v  550 (596)
                      -.-+.+...+.+|.+|.+.||+.-|+.-.++=.|+++|........+..        .+.+   .++.+.++++++.+.+
T Consensus       421 FGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~--------yp~~---~g~~~v~~i~~~~~~~  489 (538)
T KOG0252|consen  421 FGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN--------YPPN---IGVRNVFIILAGCMLL  489 (538)
T ss_pred             cCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc--------CCcc---ccchHHHHHHHHHHHH
Confidence            5555666777889999999999999999999999999999877765411        1112   3456789999999888


Q ss_pred             HHHHHHHHhhccccccCCC
Q 007604          551 NFVFFLVVAKFYVYKAEVS  569 (596)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~  569 (596)
                      +.++.+++ +++++|..++
T Consensus       490 gi~~T~l~-pEtk~~~lee  507 (538)
T KOG0252|consen  490 GILFTLLI-PETKGKSLEE  507 (538)
T ss_pred             hHheeEEe-ecccccCHHH
Confidence            87776665 4777776654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.68  E-value=1.4e-14  Score=155.65  Aligned_cols=150  Identities=11%  Similarity=0.090  Sum_probs=122.8

Q ss_pred             hhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcccc
Q 007604           61 TDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCR  140 (596)
Q Consensus        61 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (596)
                      .++++....+.+.+.+++.++++++.+++|.+.||+ .-.+.+....++..+-.++.....                   
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~-------------------  132 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH-------------------  132 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            367888999999999999999999999999999998 866666665555544444443332                   


Q ss_pred             ccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhc------cc
Q 007604          141 KASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYI------QD  214 (596)
Q Consensus       141 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l------~~  214 (596)
                           +.+.+++.|++.|+..++..|....+++.++.+++      |+.-+++++....+|.++|.++...+      ..
T Consensus       133 -----s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~  201 (495)
T KOG2533|consen  133 -----SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG  201 (495)
T ss_pred             -----hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence                 78899999999999999999999999999999997      99999999999999999999887765      23


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHhcCC
Q 007604          215 DVGWALGYGLPALGLAIAIAIFLAGTP  241 (596)
Q Consensus       215 ~~g~~~~f~~~~~~~~~~~~~~~~~~~  241 (596)
                      ..||||.|++.+++.+...++.++..|
T Consensus       202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  202 LAGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             cCCceeehhHHHHHHHHHHheEEEEec
Confidence            478999999999765544444444333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.68  E-value=7.4e-14  Score=139.51  Aligned_cols=327  Identities=13%  Similarity=0.121  Sum_probs=230.2

Q ss_pred             HHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 007604           54 SNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCND  133 (596)
Q Consensus        54 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  133 (596)
                      ..+..-+++++|++.+.+|.+.+...++..+..+++.+++.|+ |..+.+..++++.++|.++=...             
T Consensus        32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~-------------   97 (395)
T COG2807          32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG-------------   97 (395)
T ss_pred             hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc-------------
Confidence            3344567889999999999999999999999999999999998 99999999999999988776543             


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 007604          134 INSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQ  213 (596)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~  213 (596)
                                  +...++.+-.+.|.|.+......+.++-+.||++       -+..++.|....++|+++++.+...+.
T Consensus        98 ------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla  158 (395)
T COG2807          98 ------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLA  158 (395)
T ss_pred             ------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHH
Confidence                        5667889999999999999999999999999987       689999999999999999998888887


Q ss_pred             ccc-cchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcc
Q 007604          214 DDV-GWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKY  292 (596)
Q Consensus       214 ~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (596)
                      ++. |||..+.+-+...+++++..+....+  ++.+..+..                                    ...
T Consensus       159 ~~~~gW~~aL~~WAl~allAl~~WlPq~~r--~~~~~~~~~------------------------------------~~~  200 (395)
T COG2807         159 QHSGGWRGALGFWALLALLALLIWLPQALR--EQAASIATK------------------------------------LVS  200 (395)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHhhhccc--ccccccccc------------------------------------ccc
Confidence            766 79998887777666666544332111  111100000                                    000


Q ss_pred             cccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCccccc
Q 007604          293 RIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIP  372 (596)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  372 (596)
                      +.                   +.|        ++.......+.+-+-...+|....+++.++.++.....         .
T Consensus       201 ~~-------------------~vw--------~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~---------~  244 (395)
T COG2807         201 VR-------------------KVW--------RSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAA---------E  244 (395)
T ss_pred             cc-------------------ccc--------cCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHH---------H
Confidence            00                   011        11122223334446677888888888888777643211         2


Q ss_pred             ccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcc
Q 007604          373 PASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV  452 (596)
Q Consensus       373 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (596)
                      .+.+.++..+..+....++..+.    +|..      +.........+++.++++...+...                  
T Consensus       245 aG~llsl~~l~~~~~~ll~P~la----~R~~------n~r~~~~~~~~~~l~G~~G~~~~P~------------------  296 (395)
T COG2807         245 AGSLLSLMQLAQLPTALLIPLLA----RRSK------NQRPLVVLALLLMLVGLVGLLLAPG------------------  296 (395)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHH----HHhc------ccchHHHHHHHHHHHHHHHHHHhhh------------------
Confidence            23334444445555544444443    3211      2223345555566666666655421                  


Q ss_pred             eehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhcc-chhHHHHHHHHHHHHhHHHHHHhHHHhhhhccc
Q 007604          453 PLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAP-ESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDIT  519 (596)
Q Consensus       453 ~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~  519 (596)
                      +..++|    .+++|+|.+..+|....++...++ ++..+...|+.+..+.+=..+||.+.+.+.|.+
T Consensus       297 ~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~  360 (395)
T COG2807         297 QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT  360 (395)
T ss_pred             hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence            122333    488999999999999999988875 566778899999999999999999999998866

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.66  E-value=5.7e-13  Score=140.15  Aligned_cols=363  Identities=12%  Similarity=0.111  Sum_probs=228.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhh---cchhHHH-HHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAY---LGRYWTF-VIAFFFYL  111 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grk~~~-~~~~~~~~  111 (596)
                      ..--...+..++.+-.+..++..|.++..|+++..+|.+..+.-+..++.-|+.|.+.||.   +||+|-. +++.+.++
T Consensus        15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~   94 (467)
T COG2211          15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA   94 (467)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence            3344456666777777889999999999999999999999999999999999999999974   3766554 45556677


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      +...++..+.+...                  +.+....++-..+.+++.........++.++..++.+     +|.+..
T Consensus        95 i~~~l~F~~p~~~~------------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~  151 (467)
T COG2211          95 IVAVLLFITPDFSM------------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLT  151 (467)
T ss_pred             HHHHHHHcCCCccc------------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHH
Confidence            77777665542110                  1244555666778899999998899999999999876     599999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcc----c---cccchhhhHHHHHHHHHHHHHHHhc-CCceeccCCCCC-hhHHHHHHHHH
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQ----D---DVGWALGYGLPALGLAIAIAIFLAG-TPFYRHKKPAGS-PFTRMAKVIVA  262 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~----~---~~g~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~  262 (596)
                      ++-..+.++|..+...+.+.+.    +   ..||+...++.+++..+.++..+.. +++.....+.++ ...+....+..
T Consensus       152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~  231 (467)
T COG2211         152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLL  231 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHH
Confidence            9999999999776654444332    2   3467766665555444444433332 222221111110 00000000000


Q ss_pred             HHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhh
Q 007604          263 AIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFV  342 (596)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~  342 (596)
                                                                                   ..+.|.++..+...++..+
T Consensus       232 -------------------------------------------------------------~~~Nrp~~~~l~~~l~~~~  250 (467)
T COG2211         232 -------------------------------------------------------------IFKNRPLLLLLLMNLLLFI  250 (467)
T ss_pred             -------------------------------------------------------------HHccchHHHHHHHHHHHHH
Confidence                                                                         0112333333333332222


Q ss_pred             hhhhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHH
Q 007604          343 PSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIH  422 (596)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~  422 (596)
                      ..-.......++....  +++.     +..+...........+++.++..++..++++|           +...++.++.
T Consensus       251 ~~~i~~s~~~yy~~y~--lg~~-----~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----------~~~~~~~~~~  312 (467)
T COG2211         251 AFNIRGSIMVYYVTYV--LGDP-----ELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----------KLFLIGLLLL  312 (467)
T ss_pred             HHHHHhhhhheeEEEE--cCCh-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----------HHHHHHHHHH
Confidence            2222222223333321  1211     22222233334444455566667766666655           4577777777


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhcc-------chhHHHHHH
Q 007604          423 IIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAP-------ESMKSLGTS  495 (596)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g  495 (596)
                      .++.+...+..                   ..+.+..++..++.++|.+..++..+++++|...       .+..|...|
T Consensus       313 ~i~~~~~~f~~-------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s  373 (467)
T COG2211         313 AVGYLLLYFTP-------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYS  373 (467)
T ss_pred             HHHHHHHHhhc-------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHH
Confidence            77777766642                   1345556666688899999999999999887653       455688899


Q ss_pred             HHHHHHhHHHHHHhHHHhhhhccc
Q 007604          496 YSMTTLGVGNFLSSFLLSTVSDIT  519 (596)
Q Consensus       496 ~~~~~~~ig~~lg~~~~~~i~~~~  519 (596)
                      .+.++.=+|..++..+.++++...
T Consensus       374 ~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         374 GMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999998644

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.57  E-value=9e-12  Score=134.43  Aligned_cols=399  Identities=14%  Similarity=0.093  Sum_probs=214.1

Q ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcC---C-------------------------C-hhhhhhHHHHHHHHH
Q 007604           33 RACSFVVVYEVFER-MAYHGISSNLVMYLTDKLH---H-------------------------G-TVKSANNVTNWGGTI   82 (596)
Q Consensus        33 ~~~~~~~~~~~~~~-~~~~~~~~~l~~yl~~~lg---~-------------------------~-~~~~~~~~~~~~~~~   82 (596)
                      |.++...+..+.+. +..-.+..++|.|+++...   .                         + .+..++..++..+..
T Consensus         4 ~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l~~   83 (477)
T PF11700_consen    4 REIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGLLQ   83 (477)
T ss_pred             hHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHHHH
Confidence            56666677777654 3445566778888876431   1                         1 123356778888899


Q ss_pred             HHhhhhhHHHhhhhcchhHHHHH-HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhc
Q 007604           83 WVTPIFGAGVAEAYLGRYWTFVI-AFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGT  161 (596)
Q Consensus        83 ~~~~~~~G~laD~~~Grk~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~  161 (596)
                      .+..|+.|.++|+- |+||-++. ..++..+.+.++.+..  +                    .+.....+..++..++.
T Consensus        84 all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~--~--------------------~~~~~~~~l~iia~v~~  140 (477)
T PF11700_consen   84 ALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS--P--------------------GQWWLALVLFIIANVGY  140 (477)
T ss_pred             HHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC--c--------------------chHHHHHHHHHHHHHHH
Confidence            99999999999998 76665554 4455556666666542  1                    13333333444455666


Q ss_pred             cCcccchhhhhhccCCCCChhhh--------------------hhhhhhHHHHHHHHHHHHHHhhhhhhhccc-------
Q 007604          162 GGTKPNILTIAADQFDEFEPKEK--------------------AHKLSFFNWWMFSIFFGTLLGNTVLVYIQD-------  214 (596)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~--------------------~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~-------  214 (596)
                      +.......+++.|..++++...+                    .+|++..++-....++|+.+.-++.-.+..       
T Consensus       141 ~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~  220 (477)
T PF11700_consen  141 EASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTAS  220 (477)
T ss_pred             HHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence            67778888999999998862000                    012777777777778888877655433211       


Q ss_pred             -cccchhhhHHHHHHHH-HHHHHHHhcCCcee-ccCCCC-ChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcC
Q 007604          215 -DVGWALGYGLPALGLA-IAIAIFLAGTPFYR-HKKPAG-SPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRG  290 (596)
Q Consensus       215 -~~g~~~~f~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (596)
                       ..+.|..+.+.++..+ +++..++..+++.+ +..++. +......+.++..+|+.                       
T Consensus       221 ~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~-----------------------  277 (477)
T PF11700_consen  221 NTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEI-----------------------  277 (477)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH-----------------------
Confidence             1235777777666543 33444444443322 111211 12222233333332221                       


Q ss_pred             cccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhccc---ceeeeeeccccccCCC
Q 007604          291 KYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQIN---TLFVKQGTTLDRAIGS  367 (596)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~  367 (596)
                                                        ++.|.+...+.   ..+++.-..+...   ..+..+..+++     
T Consensus       278 ----------------------------------~~~~~~~~fLi---a~~l~~dg~~ti~~~~~i~a~~~lg~s-----  315 (477)
T PF11700_consen  278 ----------------------------------RKLRQLFLFLI---AYFLYSDGVNTIISFAGIYATEVLGMS-----  315 (477)
T ss_pred             ----------------------------------HhChHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcC-----
Confidence                                              11111111111   1111111111111   11111111111     


Q ss_pred             cccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccc
Q 007604          368 SFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVE  447 (596)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (596)
                        ......+..+..+..+++..+..++-+|++.|         +.+.+.++.++..+.. ++++....    .+..|   
T Consensus       316 --~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k---------~~~~l~~~l~~~~~i~-~~g~~G~~----~~~~g---  376 (477)
T PF11700_consen  316 --TTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK---------TKRTLLISLILWIIIP-LYGLFGFW----PSFFG---  376 (477)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---------hhHHHHHHHHHHHHHH-HHHHHHhh----hcccC---
Confidence              11111222233444444444444543333333         1133444443332222 22221000    00000   


Q ss_pred             cCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCc
Q 007604          448 KGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGW  527 (596)
Q Consensus       448 ~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w  527 (596)
                           ..+.+.+.+..++.|+..+...+.+.++..+..|++..+...|++.++....+++||.+.+.+.+.++       
T Consensus       377 -----~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-------  444 (477)
T PF11700_consen  377 -----LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-------  444 (477)
T ss_pred             -----cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence                 12334455556789999999999999999999999999999999999999999999999999987663       


Q ss_pred             cccCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 007604          528 ILNNLNVCHLDYYYAFFAILNVLNFVFFLVV  558 (596)
Q Consensus       528 ~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~  558 (596)
                              +....+....++.+++++++...
T Consensus       445 --------~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  445 --------SQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             --------CchhHHHHHHHHHHHHHHHHhhc
Confidence                    22334555566666666555443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.49  E-value=1.9e-13  Score=139.33  Aligned_cols=177  Identities=16%  Similarity=0.181  Sum_probs=146.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhc-chhHHH-HHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYL-GRYWTF-VIAFFFY  110 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grk~~~-~~~~~~~  110 (596)
                      |.+|++++.+++.++..|++..|.|.|+.+..|++..++++..+.|-.+...|++++||++||.+ |||... +++++..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999998 777554 3444444


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++.+....+++                      .+..+..+..+++|+...+..-.+-....|..|++.      -|++
T Consensus       332 ~~~~~~~w~~~~----------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA  383 (448)
T COG2271         332 TASLVLYWLAPN----------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTA  383 (448)
T ss_pred             HHHHHHHHcCCC----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccch
Confidence            555555444321                      155667777778888888877777788899999886      8999


Q ss_pred             HHHHHHHHHH-HHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHH
Q 007604          191 FNWWMFSIFF-GTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFL  237 (596)
Q Consensus       191 ~~~~~~~~~i-g~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  237 (596)
                      .|....+..+ |..++....|++.+.+||...|.+..+..+++.+.+.
T Consensus       384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence            9999999988 9999999999999989999999877766666655443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.48  E-value=1.4e-12  Score=142.85  Aligned_cols=180  Identities=13%  Similarity=0.075  Sum_probs=131.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      .++.....+...++..+.+|++..++|.|+++.+|++..+.+.......++..++.+++|+++||+ |||+++.++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            344444444444566788899999999999989999998888888888899999999999999998 9999988887654


Q ss_pred             HHHHHH-HHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          111 LMGMIV-LALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       111 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      .++.+. ......                      .+...+++++++.+++.+...+....+..|.+|++.      |++
T Consensus       327 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~  378 (490)
T PRK10642        327 FVLAIPAFILINS----------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYS  378 (490)
T ss_pred             HHHHHHHHHHHhC----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chH
Confidence            443332 222110                      145566778888888777777778888899999987      999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhccccc-cchhhhHHHHHHHHHHHHHHHhc
Q 007604          190 FFNWWMFSIFFGTLLGNTVLVYIQDDV-GWALGYGLPALGLAIAIAIFLAG  239 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~  239 (596)
                      +.++.+....+++.++|.+.+++.+.. +|+.++++..+..+++++..++.
T Consensus       379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            999855556677788998999887654 36766665554444444444443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.47  E-value=2.1e-12  Score=137.21  Aligned_cols=174  Identities=9%  Similarity=0.002  Sum_probs=131.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +..+..+...+.....++....++|.|+++++|+++.+.+.+.+...++..++.+++|+++||+ |||+.+..+.+...+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~  294 (393)
T PRK15011        216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVC  294 (393)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            3333343444444445555667899999999999999999988888888888999999999998 999988877665555


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      .........                        +...+.+.+++.+++.|...+....+..|.+|++       |+++.+
T Consensus       295 ~~~~~~~~~------------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-------~g~~~~  343 (393)
T PRK15011        295 FYAGMLMAH------------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-------AGSATT  343 (393)
T ss_pred             HHHHHHHHh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------cchHHH
Confidence            443333221                        4455566777777777766667778888988853       889999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHh
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      +++...++|..++|.++|++.+..||+..|++.++..+++++..+.
T Consensus       344 ~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        344 LYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            9888899999999999999999889999998887776666655544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.46  E-value=1.5e-10  Score=118.82  Aligned_cols=348  Identities=12%  Similarity=0.124  Sum_probs=206.9

Q ss_pred             hhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcc-----hhHHHH-HHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 007604           61 TDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLG-----RYWTFV-IAFFFYLMGMIVLALSVSLSGLKPPPCNDI  134 (596)
Q Consensus        61 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rk~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  134 (596)
                      ..++++...-.+.++....+.+. ..+..|+.+|+. +     ||.-++ .+...+..+..+..++.-+..-.       
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~-------   77 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES-------   77 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc-------
Confidence            45788888888888887777664 688999999998 7     555444 55666666666665553211100       


Q ss_pred             CCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccc
Q 007604          135 NSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD  214 (596)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~  214 (596)
                      +.+ ...+.........+...+.|+|.+....+..++.+|..|+++      |++..++.+.+.-+|.+++.++.+.+.+
T Consensus        78 ~~~-~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~  150 (403)
T PF03209_consen   78 GQQ-SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLD  150 (403)
T ss_pred             ccc-cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            000 011111223344455667899999999999999999999996      9999999999999999999999998877


Q ss_pred             cccch----hhhHHHHHHHHHHHHHHHhcCCceeccC-CCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhc
Q 007604          215 DVGWA----LGYGLPALGLAIAIAIFLAGTPFYRHKK-PAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQR  289 (596)
Q Consensus       215 ~~g~~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (596)
                      .+...    ..-..+.+..++.++..+-..++.++.. .++++.....+.....                          
T Consensus       151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~--------------------------  204 (403)
T PF03209_consen  151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQV--------------------------  204 (403)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHH--------------------------
Confidence            76622    2222222333444444443333332221 1111100000000000                          


Q ss_pred             CcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCcc
Q 007604          290 GKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSF  369 (596)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  369 (596)
                                                    .  ...+.|+++..+  ++....+++--...-++ --+...++  .+   
T Consensus       205 ------------------------------~--~~~~a~~f~~fl--~l~t~a~~~QD~iLEPy-gg~Vfgms--v~---  244 (403)
T PF03209_consen  205 ------------------------------W--ASPQARRFFVFL--FLGTLAFFMQDVILEPY-GGEVFGMS--VG---  244 (403)
T ss_pred             ------------------------------H--hCCChhHHHHHH--HHHHHHHHhhHHHcCCc-hhHHcCCC--HH---
Confidence                                          0  001122222211  11222222211111111 00001111  11   


Q ss_pred             cccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccC
Q 007604          370 KIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKG  449 (596)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (596)
                        .+...+.....+.+++..+..++..   ||       .++.+....|..+.++++....+...               
T Consensus       245 --eTT~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~---------------  297 (403)
T PF03209_consen  245 --ETTRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP---------------  297 (403)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence              2344556666777777777776543   23       23334455566666666655443321               


Q ss_pred             CcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhcccc
Q 007604          450 QQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITK  520 (596)
Q Consensus       450 ~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~  520 (596)
                         .-+.+.+.+..+++|++.++......+...+.++++..|+.+|.|...+.++..++..+.+.+.|...
T Consensus       298 ---~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~  365 (403)
T PF03209_consen  298 ---LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR  365 (403)
T ss_pred             ---cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               12456777888999999999999999999999999999999999999999999999999998887653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.44  E-value=2.3e-12  Score=140.24  Aligned_cols=176  Identities=14%  Similarity=0.073  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +.+|.+.+..++....+++...++|.|+++.+|++..++++..+...++..++.+++|+++||+ |||+.+.+...+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4578888888888888888889999999999999999999999999999999999999999998 999887765544443


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +..+......                      .+....++.+++.|++.............|.+|++.      |+++.+
T Consensus       337 ~~~~~~~~~~----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~g  388 (467)
T PRK09556        337 IFTLGVYQHA----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANG  388 (467)
T ss_pred             HHHHHHHHhc----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHH
Confidence            3322222210                      134445566666665443333333456679999886      999999


Q ss_pred             HHHHHHHH-HHHHhhhhhhhccc------------cccchhhhHHHHHHHHHHHHHHH
Q 007604          193 WWMFSIFF-GTLLGNTVLVYIQD------------DVGWALGYGLPALGLAIAIAIFL  237 (596)
Q Consensus       193 ~~~~~~~i-g~~l~~~~~~~l~~------------~~g~~~~f~~~~~~~~~~~~~~~  237 (596)
                      +.+...++ |+.++|.+.|++.+            ..||+..|++.++..+++.+..+
T Consensus       389 i~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        389 IKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            99988887 77999999999998            57899999887766666655444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.43  E-value=2.3e-12  Score=123.79  Aligned_cols=378  Identities=11%  Similarity=0.091  Sum_probs=221.9

Q ss_pred             HHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 007604           53 SSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCN  132 (596)
Q Consensus        53 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  132 (596)
                      ..-+.++.+...+.+.++..++-+.|+.-..+.+.++|++.||.+|-|..-++-+++..+|.++.+...-+         
T Consensus        63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~---------  133 (459)
T KOG4686|consen   63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS---------  133 (459)
T ss_pred             chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH---------
Confidence            34567788888888889999999999999999999999999999998876666666667777776654211         


Q ss_pred             CCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhc
Q 007604          133 DINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYI  212 (596)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l  212 (596)
                                  ...+++.++|++.|+|.-....+...+...+|..+|      .+..++++.....+|+..-..+.+++
T Consensus       134 ------------~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~l  195 (459)
T KOG4686|consen  134 ------------HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFL  195 (459)
T ss_pred             ------------HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHH
Confidence                        268889999999999988888888999999999987      99999999999999998777777777


Q ss_pred             cccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcC--
Q 007604          213 QDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRG--  290 (596)
Q Consensus       213 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  290 (596)
                      .+..+   .++-......+++.+.+-.+.         ...+-+....... .                  ++.+++.  
T Consensus       196 y~~~~---~~~~~~ghT~LG~~l~~~~~t---------c~~slical~lg~-~------------------D~rAerilh  244 (459)
T KOG4686|consen  196 YDTMG---RMFPGVGHTLLGLWLCFEVKT---------CKQSLICALSLGL-S------------------DDRAERILH  244 (459)
T ss_pred             HHHHH---HhcccchHHHHHHHHHHHHHH---------HHHHHHHHHHhhh-h------------------hhHHHHHHh
Confidence            65433   111011112222222111000         0000000000000 0                  0000000  


Q ss_pred             --cccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCc
Q 007604          291 --KYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSS  368 (596)
Q Consensus       291 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  368 (596)
                        ..+.++.+                     +.+++.+.+.-+-++  ....++||.....+.+.-..   ......| -
T Consensus       245 ~e~g~~Ge~p---------------------kLtdv~~f~ppfw~~--~iicv~yyva~fPFi~lg~~---fF~~rfG-l  297 (459)
T KOG4686|consen  245 LEEGFLGEEP---------------------KLTDVNTFYPPFWVL--VIICVLYYVAWFPFITLGPM---FFQKRFG-L  297 (459)
T ss_pred             hhcCcccCCc---------------------ccccccccCccHHHH--HHHHHHHHHHHHHHhhhhHH---HHHHhhC-C
Confidence              00000000                     111222222111111  11122333332222211100   0011111 0


Q ss_pred             ccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcccc
Q 007604          369 FKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEK  448 (596)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (596)
                      .......+.+..-....+..|..+.++||.+++.          ..+..+.++..++-....+.                
T Consensus       298 S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft----------------  351 (459)
T KOG4686|consen  298 SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFT----------------  351 (459)
T ss_pred             ChhhccchhhhhhhhhhhhhhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhh----------------
Confidence            0112233334444556667889999999999884          22444444444443333332                


Q ss_pred             CCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCcc
Q 007604          449 GQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWI  528 (596)
Q Consensus       449 ~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~  528 (596)
                             .+.-...+.++|++..+..-..|..++..+|++.-|++.|..+..+.+|-.+.+.+.+.+.+.-   +.  + 
T Consensus       352 -------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~---g~--y-  418 (459)
T KOG4686|consen  352 -------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD---GS--Y-  418 (459)
T ss_pred             -------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC---Cc--h-
Confidence                   1222345678888888888888999999999999999999999999999999999999887522   11  1 


Q ss_pred             ccCCcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 007604          529 LNNLNVCHLDYYYAFFAILNVLNFVFFLVVAK  560 (596)
Q Consensus       529 ~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~  560 (596)
                            ...+.+|.....+++....+.+...+
T Consensus       419 ------~~le~ffl~~~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  419 ------DNLEAFFLIIGLMALTSVGILFYLNK  444 (459)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHhheec
Confidence                  11344555555555555555555433

>PRK09952 shikimate transporter; Provisional

Probab=99.39  E-value=7.8e-12  Score=134.85  Aligned_cols=181  Identities=12%  Similarity=0.001  Sum_probs=130.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      ++.........++..+.+|....+++.|+++.+|++......+.........++.++.|+++||+ |||+++..+.++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~  327 (438)
T PRK09952        249 PGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGT  327 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            33334344456667788888899999999999999988766666666777888899999999998 99999988876655


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++.+.+......                    ......+.+..++.+++.+...+..+++.+|.+|.+.      |+++.
T Consensus       328 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~  381 (438)
T PRK09952        328 LSAFPFFMALEA--------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGA  381 (438)
T ss_pred             HHHHHHHHHHHc--------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHH
Confidence            544333322100                    0123334445566678888878888999999999976      98888


Q ss_pred             HHHH-HHHHHHHHHhhhhhhhccccc--cchhhhHHHHHHHHHHHHHHHhc
Q 007604          192 NWWM-FSIFFGTLLGNTVLVYIQDDV--GWALGYGLPALGLAIAIAIFLAG  239 (596)
Q Consensus       192 ~~~~-~~~~ig~~l~~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~  239 (596)
                      ++.+ .+..+|+.++|.+.+++.+..  +|+.++.+.++..+++.+..+..
T Consensus       382 g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        382 GVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            8844 445689999999999987643  48888777766666666555544

>PRK03699 putative transporter; Provisional

Probab=99.39  E-value=7.9e-12  Score=132.86  Aligned_cols=170  Identities=14%  Similarity=0.063  Sum_probs=133.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +.++.+.+..++.....+++..++|.|+++.+|++..+.+.+.+.+.++..++.+++|+++||+ |||+.+.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            3455566666666677778889999999999999999999999999999999999999999998 999998877766655


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +..+.....                        +...+.+..++.|++.+...+...++..+..|++       +++..+
T Consensus       284 ~~~~~~~~~------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g  332 (394)
T PRK03699        284 LMYLFVNTD------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVN  332 (394)
T ss_pred             HHHHHHHcC------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHH
Confidence            544443322                        3444455566778877777788788888877654       456677


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHH
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIA  234 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  234 (596)
                      +...+.++|..++|.+.|++.+..||+..+++.++..+++.+
T Consensus       333 ~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        333 FILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence            878888999999999999999989999999877766555543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.39  E-value=1.2e-11  Score=130.07  Aligned_cols=165  Identities=10%  Similarity=-0.033  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 007604           42 EVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSV  121 (596)
Q Consensus        42 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~  121 (596)
                      .++..........+++.|+.+++|.++.+.+++.+.......++.+++|+++||+ |||+++.++.++..++.+......
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
T TIGR00899       208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN  286 (375)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444556788899889999999999988887778888899999999998 999999887766555544443332


Q ss_pred             hccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 007604          122 SLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFG  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  201 (596)
                                              +.+.+++.+++.|++.+...+....+..|..|++       ++++.++++...++|
T Consensus       287 ------------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g  335 (375)
T TIGR00899       287 ------------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVG  335 (375)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHH
Confidence                                    4555666777888888888888888888988754       679999999999999


Q ss_pred             HHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHh
Q 007604          202 TLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       202 ~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      ..++|.+.|++.+..||+..|++.++..+++.+..+.
T Consensus       336 ~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       336 WIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            9999999999998889999999888776666655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.39  E-value=6.2e-12  Score=131.73  Aligned_cols=169  Identities=12%  Similarity=0.051  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      ..+.+....++..+.......+.+.|. +++|.++.+.+.+.+.+.++..++.+++|+++||+ |||+.+.++..+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  283 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG  283 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence            344444444444455555556666665 46899999999999999999999999999999998 9999999988888888


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      .++.....+                      .+...+++..++.+++.+...+..+++..|.+|+++      |++..++
T Consensus       284 ~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~  335 (377)
T TIGR00890       284 MAAMLFIPM----------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGF  335 (377)
T ss_pred             HHHHHHccc----------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHH
Confidence            776655421                      022234455667788888888888899999999886      9999999


Q ss_pred             HHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHH
Q 007604          194 WMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIA  232 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~  232 (596)
                      .+...++|..++|.+.|++.+..||+..|++.++..+++
T Consensus       336 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       336 LYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            999999999999999999999899999998877655544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.38  E-value=1.1e-11  Score=131.97  Aligned_cols=169  Identities=9%  Similarity=0.073  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007604           44 FERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSL  123 (596)
Q Consensus        44 ~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~  123 (596)
                      +..+.++....+++.|+.+ .|.  .+.+...+.+.++..++.++.|++.||+ |||+.+..+..+..++.++.....  
T Consensus       227 ~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--  300 (399)
T PRK05122        227 LASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP--  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc--
Confidence            3445566667788888764 455  3456667778888999999999999998 999999988888777776666542  


Q ss_pred             cCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 007604          124 SGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTL  203 (596)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  203 (596)
                                            +...+++.+++.|++.+...+.......|.+|+++      |+++.++++...++|..
T Consensus       301 ----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~  352 (399)
T PRK05122        301 ----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLG  352 (399)
T ss_pred             ----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHH
Confidence                                  45556677888999998888888888889888775      99999999999999999


Q ss_pred             HhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceecc
Q 007604          204 LGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHK  246 (596)
Q Consensus       204 l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  246 (596)
                      +++.+.|++.+..||+..|++.++..+++++..+..+++.+++
T Consensus       353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (399)
T PRK05122        353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA  395 (399)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            9999999999888999999988877777766655555544443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.38  E-value=8e-11  Score=121.06  Aligned_cols=387  Identities=9%  Similarity=-0.011  Sum_probs=214.6

Q ss_pred             HHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 007604           54 SNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCND  133 (596)
Q Consensus        54 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  133 (596)
                      +-..+|....+| +...+-|...+|.+.+....+.+-|+.|++ |-|.+++++.++.++|..+=..+. .|.+.+     
T Consensus        65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~-----  136 (480)
T KOG2563|consen   65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVPP-----  136 (480)
T ss_pred             hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Cccccc-----
Confidence            345556777777 777788999999999999999999999998 999999999999999998877664 222111     


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 007604          134 INSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQ  213 (596)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~  213 (596)
                                .......+.+..+.+.+.-.....-+-+..-+||+++      |..+..+-.++..+|.++|.++...+.
T Consensus       137 ----------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV  200 (480)
T KOG2563|consen  137 ----------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILV  200 (480)
T ss_pred             ----------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceec
Confidence                      1112366677888888777777776777888999997      999999888888888888876666654


Q ss_pred             cc------ccchh--hhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHH
Q 007604          214 DD------VGWAL--GYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEY  285 (596)
Q Consensus       214 ~~------~g~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (596)
                      .+      ..|..  .|+....+..+.++...+.+++.++.||..+...+.                             
T Consensus       201 ~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~-----------------------------  251 (480)
T KOG2563|consen  201 PSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ-----------------------------  251 (480)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh-----------------------------
Confidence            33      23554  233222333333333344444433333322110000                             


Q ss_pred             hhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccC
Q 007604          286 YAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAI  365 (596)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  365 (596)
                             +.+..+        ..            .+...+++.++....+......|+..+..+......+..  +   
T Consensus       252 -------~~~f~~--------si------------~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY--~---  299 (480)
T KOG2563|consen  252 -------DASFPK--------SI------------KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGY--E---  299 (480)
T ss_pred             -------cCcHHH--------HH------------HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccC--C---
Confidence                   000000        00            001122233333333333334444443322211111100  0   


Q ss_pred             CCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhccC
Q 007604          366 GSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIII-MVIASFTERYRLSVAKDHG  444 (596)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~-~~~~~~~~~~~~~~~~~~~  444 (596)
                          +...+.......+..+++..+.+.    +.+|..+.      +..+.+-+....++ +.+.....        +  
T Consensus       300 ----~~~aG~ig~l~iv~Gmlga~~~gi----i~Dktk~f------k~~~~v~~~~~~v~~~~l~~~t~--------~--  355 (480)
T KOG2563|consen  300 ----GVFAGYIGALMIVAGMLGALASGI----IADKTKKF------KLTTLVLYLFALVGTLMLLTCTL--------F--  355 (480)
T ss_pred             ----ccccchhHHHHHHHHHHHHHHHHh----hhhhhhhH------HHHHHHHHHHHHHHHHHHHHhhc--------c--
Confidence                011222233333334444444444    45553221      12233333333333 21111110        0  


Q ss_pred             ccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCC
Q 007604          445 IVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGH  524 (596)
Q Consensus       445 ~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~  524 (596)
                              .-+.+++.....++|+++....|...|+..|..=+..-|+..|+.++...+-..+-..+.+...+       
T Consensus       356 --------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~-------  420 (480)
T KOG2563|consen  356 --------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE-------  420 (480)
T ss_pred             --------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh-------
Confidence                    12334455556788888889999999999999877888899999888777766666666555542       


Q ss_pred             CCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 007604          525 KGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVS  569 (596)
Q Consensus       525 ~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~  569 (596)
                      +.+.+++.     ...-+.++...++++.+..++...|+++..+.
T Consensus       421 ~~~~~~~~-----~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~  460 (480)
T KOG2563|consen  421 DLGPPGNT-----FPANIFLTVSALLGAILVAFFRPDYRRLRAEA  460 (480)
T ss_pred             ccCCCCCC-----ccchhHhHHHHHHHHHHHhhhhhhHHhHhhhh
Confidence            11211111     11123445555666666666666666655543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.38  E-value=8.8e-12  Score=132.84  Aligned_cols=170  Identities=8%  Similarity=-0.044  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMI  115 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  115 (596)
                      +.+....++.....+.+..++|.|+.+ .|.+..+.+.+.+.+.++..++.++.|+++||+ |||+.+..+.+...++.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  300 (406)
T PRK11551        223 LLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence            333344444455666777888988875 799999999999999999999999999999998 999998887666666555


Q ss_pred             HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 007604          116 VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWM  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  195 (596)
                      +.....                        +...+.+..++.|++.++..+...++..|.+|+++      |++..++.+
T Consensus       301 ~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~  350 (406)
T PRK11551        301 ALAAAP------------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAV  350 (406)
T ss_pred             HHHhcC------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHH
Confidence            544332                        34445556667788777778888999999999986      999999999


Q ss_pred             HHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHHH
Q 007604          196 FSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIFL  237 (596)
Q Consensus       196 ~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~  237 (596)
                      ....+|..++|.+.|++.+..+ |...+++.....+++.+..+
T Consensus       351 ~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        351 AVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987644 55566655555544444433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.38  E-value=8.6e-12  Score=140.68  Aligned_cols=134  Identities=10%  Similarity=-0.012  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHH
Q 007604           74 NVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAA  153 (596)
Q Consensus        74 ~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (596)
                      ...+..++..++.+++|+++||+ |||+++++++++.+++.++.++..                        +...+++.
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~------------------------s~~~ll~~  654 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN------------------------SESAMIAL  654 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc------------------------cHHHHHHH
Confidence            34566688899999999999998 999999999999888888777653                        34455666


Q ss_pred             HHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHH
Q 007604          154 LYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAI  233 (596)
Q Consensus       154 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  233 (596)
                      +++.+++.++..+...++++|++|++.      |++++++.+...++|+++||.+++++... +...+|++.++..+++.
T Consensus       655 ~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~  727 (742)
T TIGR01299       655 LCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGG  727 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence            777788777788889999999999986      99999999999999999999999887653 45677877776666655


Q ss_pred             HHHHhc
Q 007604          234 AIFLAG  239 (596)
Q Consensus       234 ~~~~~~  239 (596)
                      ++.+.+
T Consensus       728 ll~~~L  733 (742)
T TIGR01299       728 LLALKL  733 (742)
T ss_pred             HHHHhC
Confidence            554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.37  E-value=3e-11  Score=128.36  Aligned_cols=178  Identities=16%  Similarity=0.089  Sum_probs=137.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +..+.+.+..++..+.++++..++|.|+.+ +|++..+.+...+.+.++..++.++.|+++||+ |||+.+.++..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            345555556666777888899999999985 799999999999999999999999999999998 999999988877777


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.++.....                       .+...+  ..++.|++.+...|.......+.+++++     .|++.++
T Consensus       283 ~~~~~~~~~-----------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g  332 (393)
T PRK09705        283 GFCGFIWLP-----------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVA  332 (393)
T ss_pred             HHHHHHHcc-----------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHH
Confidence            766544321                       022122  2245678888888888777888886543     3899999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHHHhcCCc
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIFLAGTPF  242 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~  242 (596)
                      +.+...++++.++|.+.|++.+..| |+..|++.++..++.+.......++
T Consensus       333 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        333 FMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999998876 8888888776666555554544443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.37  E-value=2.2e-11  Score=125.97  Aligned_cols=171  Identities=19%  Similarity=0.247  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhH-HHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYW-TFVIAFFFYLMG  113 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~-~~~~~~~~~~i~  113 (596)
                      .+...+..++..........+.+.|+.+.+|.+..+.+.......++..++.++.|++.||+ |||+ .+.++..+..++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence            33444445556666667778888888888899999999999999999999999999999998 9999 999999888888


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      .+......                        +...+++..++.|++.+...+...++..|..|+++      |++.++.
T Consensus       256 ~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  305 (352)
T cd06174         256 LLLLALAP------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGL  305 (352)
T ss_pred             HHHHHHhc------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHH
Confidence            88777653                        46667788999999999999999999999999875      9999999


Q ss_pred             HHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHH
Q 007604          194 WMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIF  236 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  236 (596)
                      .+...++|..+++.+.+++.+..+|+..+++.++..+++.+..
T Consensus       306 ~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         306 FNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999988999999998887766665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00889 2A0110 nucleoside transporter

Probab=99.36  E-value=9.2e-12  Score=133.36  Aligned_cols=175  Identities=9%  Similarity=0.040  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--------hhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHG--------TVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAF  107 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~  107 (596)
                      +.+++..++..........+++.|+.+ .|.+        ..+.+...+...+...++.++.|+++||+ |||+++.++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~  288 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL  288 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence            344444444444444455777888764 4544        35668889999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhh
Q 007604          108 FFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHK  187 (596)
Q Consensus       108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  187 (596)
                      ++..++..++.....                    ...+...+++.+++.|++.+...+....++.|.+|+++      |
T Consensus       289 ~~~~v~~~l~~~~~~--------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~  342 (418)
T TIGR00889       289 VAWALRFGFFAYGDP--------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------R  342 (418)
T ss_pred             HHHHHHHHHHHHcCc--------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence            988887766655310                    00134556778889999999888999999999999886      9


Q ss_pred             hhhHHHHH-HHHHHHHHHhhhhhhhcccc------ccchhhhHHHHHHHHHHHHHHHh
Q 007604          188 LSFFNWWM-FSIFFGTLLGNTVLVYIQDD------VGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       188 ~~~~~~~~-~~~~ig~~l~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      +++.++.+ ....+|.++||.++|++.+.      +||+.+|.+.++..+++.+.++.
T Consensus       343 g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~  400 (418)
T TIGR00889       343 ASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMI  400 (418)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999997 56789999999999999876      46999998877665555444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.35  E-value=8.3e-12  Score=131.59  Aligned_cols=169  Identities=12%  Similarity=0.016  Sum_probs=130.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      ++.++......++....++....+++.|+++++|.+..+.+.+.....++..++.+++|+++||+ |||+.+..+..+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~  296 (394)
T TIGR00883       218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAA  296 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            34466666666777778888889999999889999999999999999999999999999999998 99998876554443


Q ss_pred             HHH-HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          112 MGM-IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       112 i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      +.. .+......                     ..+...+++..++.+++.+...+...+++.|.+|++.      |+++
T Consensus       297 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~  349 (394)
T TIGR00883       297 LLAVPLLMALLD---------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTG  349 (394)
T ss_pred             HHHHHHHHHHhc---------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeE
Confidence            332 22211110                     0144555666778888888888999999999999886      8999


Q ss_pred             HHH-HHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHH
Q 007604          191 FNW-WMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALG  228 (596)
Q Consensus       191 ~~~-~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~  228 (596)
                      .+. ++....+|..++|.++|++.+..| |+..++..++.
T Consensus       350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            887 455667899999999999998888 88776655543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.33  E-value=7.5e-11  Score=125.15  Aligned_cols=175  Identities=8%  Similarity=-0.083  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      ++......++.....++...+++.|+.+..|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+ .+..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            33344444555556666677888888888999999999999999999999999999999998 988654 4444444443


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      .+.....                       .+...+.+..++.|++.+...+.....+.+..|+ +      |+++.+++
T Consensus       285 ~~l~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~~  334 (390)
T PRK03545        285 LLLLPAA-----------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A------TDVAMALF  334 (390)
T ss_pred             HHHHHHh-----------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c------HHHHHHHH
Confidence            3332211                       1455666777788888887777778888887764 3      89999999


Q ss_pred             HHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCC
Q 007604          195 MFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTP  241 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  241 (596)
                      +...++|..+||.++|++.+..|++..|++.+.+.+++.+......+
T Consensus       335 ~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        335 SGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            98999999999999999999999999999888877777766555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.32  E-value=4.7e-11  Score=125.55  Aligned_cols=179  Identities=13%  Similarity=-0.006  Sum_probs=128.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHH-HHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWT-FVIAFFFYL  111 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~-~~~~~~~~~  111 (596)
                      +..+..++..++..........+++.|+.+.+|.+..+.+++.+...++..++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4566677777778888888889999999999999999999999999999999999999999998 98861 111111111


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++.++.........                 ...+.........+.+.+.+ ..+...++..|.+|+++      |++..
T Consensus       294 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~  349 (399)
T TIGR00893       294 IAGLVLSLLMFATN-----------------YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTG  349 (399)
T ss_pred             HHHHHHHHHHHHhc-----------------cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHH
Confidence            11111111100000                 00022223233333334433 78899999999999886      99999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHH
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIF  236 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~  236 (596)
                      ++.+...++|..++|.+.|++.+..| |+..|++.++..+++.+..
T Consensus       350 ~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       350 GLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888 9999988777666555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.31  E-value=6.6e-11  Score=124.99  Aligned_cols=191  Identities=13%  Similarity=0.082  Sum_probs=139.8

Q ss_pred             CCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcch-h
Q 007604           23 PVRRSKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTD-KLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGR-Y  100 (596)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-k  100 (596)
                      ...+..+.+||.+++..+.++....-+..+....-.|+++ +.+.+.+..|+++++..++..++.+..|+-..|. |+ |
T Consensus        24 ~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k  102 (488)
T KOG2325|consen   24 SPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVK  102 (488)
T ss_pred             ccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcc
Confidence            3444556789999999888888877777666666678774 4788889999999999999999999999999998 75 7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCC
Q 007604          101 WTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFE  180 (596)
Q Consensus       101 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  180 (596)
                      +-++.+.++.++|.++.......+                   +...+.++++|++.|+|.|.. ...-+|+++....++
T Consensus       103 ~Pli~s~ii~~~g~llY~~l~~~~-------------------~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d  162 (488)
T KOG2325|consen  103 KPLIVSFLIAIIGNLLYLALAYVP-------------------NGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED  162 (488)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhcc-------------------cchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc
Confidence            778889999999998884443322                   125778889999999997754 566688888777665


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcc----cc---------ccchhhhHHHHHHHHHHHHHHHhcC
Q 007604          181 PKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQ----DD---------VGWALGYGLPALGLAIAIAIFLAGT  240 (596)
Q Consensus       181 ~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~----~~---------~g~~~~f~~~~~~~~~~~~~~~~~~  240 (596)
                            |.++++....+..+|..+||.+...+.    ..         .-|..+-|+.++..++.++++...-
T Consensus       163 ------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f  229 (488)
T KOG2325|consen  163 ------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFF  229 (488)
T ss_pred             ------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhe
Confidence                  888888777766777777776543321    11         1144566677766655555544433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.31  E-value=1e-11  Score=110.35  Aligned_cols=134  Identities=15%  Similarity=0.218  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHH
Q 007604           74 NVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAA  153 (596)
Q Consensus        74 ~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (596)
                      ..+.+.++..++.++.|+++||+ |||+.+..+..+..++.+......                        +...+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~   57 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS------------------------NITVLIIA   57 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc------------------------cHHHHHHH
Confidence            34556788899999999999998 999999999888888877776543                        56677788


Q ss_pred             HHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHH
Q 007604          154 LYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAI  233 (596)
Q Consensus       154 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  233 (596)
                      +++.|++.+...+...++..|.+|+++      |++..++.+...++|..++|.+.+++.+..+|++.|++.++..+++.
T Consensus        58 ~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (141)
T TIGR00880        58 RFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF  131 (141)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999886      99999999999999999999999999888899999988776655555


Q ss_pred             HHHHh
Q 007604          234 AIFLA  238 (596)
Q Consensus       234 ~~~~~  238 (596)
                      +....
T Consensus       132 ~~~~~  136 (141)
T TIGR00880       132 ILLAF  136 (141)
T ss_pred             HHHhh
Confidence            44443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.31  E-value=8.1e-11  Score=124.55  Aligned_cols=169  Identities=8%  Similarity=-0.116  Sum_probs=142.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |.++...+..++.........++.+.|+++ +|.++.+.+.+.+...++..++.++.|++.||+ |+|+++.++.++..+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            456666666777777777888899999975 899999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      ..++.+.++                        +.+.+++..++.|+..|...+....++.+. |+++      |+++.+
T Consensus       283 ~~~~~~~~~------------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~  331 (382)
T TIGR00902       283 RWAIIGAIE------------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQA  331 (382)
T ss_pred             HHHHHHhHh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHH
Confidence            888877654                        677788889999999999999999999987 7765      888888


Q ss_pred             HHH-HHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHH
Q 007604          193 WWM-FSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAI  235 (596)
Q Consensus       193 ~~~-~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  235 (596)
                      +++ ....+|..+|+.++|++.+..|+ ..|++.++..++++++
T Consensus       332 ~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       332 LYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            876 46789999999999999999886 5666666655555544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.30  E-value=1.4e-11  Score=132.04  Aligned_cols=159  Identities=11%  Similarity=0.003  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHhhhc---CCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007604           47 MAYHGISSNLVMYLTDKL---HHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSL  123 (596)
Q Consensus        47 ~~~~~~~~~l~~yl~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~  123 (596)
                      ..+......++.|+.+.+   +.+..+.+.+.++..++..++.+++|+++||+ |||+.+.++.++..++.++..++.  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~--  313 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT--  313 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc--
Confidence            333334445677766543   56667888999999999999999999999998 999999998888888877776653  


Q ss_pred             cCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH-HHHHHHHHH
Q 007604          124 SGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW-WMFSIFFGT  202 (596)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~  202 (596)
                                            +...+++.+++.+++.+...+....++.|.+|++.      |++..+. ++....+|.
T Consensus       314 ----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~  365 (420)
T PRK09528        314 ----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGA  365 (420)
T ss_pred             ----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHH
Confidence                                  56667778888888888777778888999999875      7777655 667788999


Q ss_pred             HHhhhhhhhccccccchhhhHHHHHHHHHHHHHH
Q 007604          203 LLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIF  236 (596)
Q Consensus       203 ~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  236 (596)
                      +++|.+.|++.+..||+.+|.+.++..++..++.
T Consensus       366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~  399 (420)
T PRK09528        366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS  399 (420)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998776655444333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.29  E-value=7.2e-11  Score=125.75  Aligned_cols=164  Identities=12%  Similarity=0.067  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCChh---hhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 007604           44 FERMAYHGISSNLVMYLTDKLHHGTV---KSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALS  120 (596)
Q Consensus        44 ~~~~~~~~~~~~l~~yl~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~  120 (596)
                      +.......+..+++.|+.+..+....   ..+.+.++..++..++.+..|+++||+ |||+++..+..+..++.+.....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~  308 (408)
T PRK09874        230 IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFV  308 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHh
Confidence            33344445567778887765443221   244555667788889999999999998 99999999888777766665544


Q ss_pred             hhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 007604          121 VSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFF  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  200 (596)
                      .                        +...+++.+++.|++.+...|...+++.+..|++.      |++.+++++...++
T Consensus       309 ~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~  358 (408)
T PRK09874        309 Q------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDI  358 (408)
T ss_pred             c------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHH
Confidence            2                        45567778888999999999999999999888876      99999999999999


Q ss_pred             HHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHh
Q 007604          201 GTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       201 g~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      |..+||.++|++.+..||+..|++.+++.+++.+..+.
T Consensus       359 g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        359 GNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999899999999888776666655443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.29  E-value=7e-11  Score=127.31  Aligned_cols=178  Identities=12%  Similarity=0.028  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcch--hHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGR--YWTFVIAFFFY  110 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr--k~~~~~~~~~~  110 (596)
                      +.++.+.+..++....++++..++|.|+.+++|++..+.+...+.+.++..++.+++|+++||+.+|  +.......+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence            3466666666666777778888999999888999999999999999999999999999999997322  22222221111


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .+....+.....                      .+.....+..++.|++.............|.+|++.      |++.
T Consensus       323 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  374 (434)
T PRK11663        323 LLSVGSLWLMPF----------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAA  374 (434)
T ss_pred             HHHHHHHHHccc----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhH
Confidence            111111111110                      022222233333444332222233456788888775      9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHh
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      .++.+...++|..++|.+.|++.+..||+..|++.+++.+++.+..+.
T Consensus       375 ~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        375 TGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887776655544443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.28  E-value=6.9e-10  Score=113.74  Aligned_cols=343  Identities=13%  Similarity=0.041  Sum_probs=183.2

Q ss_pred             HHHHHHHHhhhcCC---Ch----hhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHH-HHHHHHHHHHHHHHHHHhhcc
Q 007604           53 SSNLVMYLTDKLHH---GT----VKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTF-VIAFFFYLMGMIVLALSVSLS  124 (596)
Q Consensus        53 ~~~l~~yl~~~lg~---~~----~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~-~~~~~~~~i~~~~~~~~~~~~  124 (596)
                      +..+|.|+++..+-   ++    +..+...++..+..++..|+-|.++|.. |+||-. -....+..+.+..+.++..  
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~--  111 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP--  111 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC--
Confidence            45678888876544   33    3455667788888999999999999998 865544 4445556666666666531  


Q ss_pred             CCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 007604          125 GLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLL  204 (596)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l  204 (596)
                                         ..++....+...+..++..+......++..|..++++      .++..+.-+...++|+.+
T Consensus       112 -------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i  166 (438)
T COG2270         112 -------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVI  166 (438)
T ss_pred             -------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchH
Confidence                               1245555566677888888888899999999999876      344333333344555544


Q ss_pred             hhhhh--hh-cc---------------ccccchhhhHHHHHHHHHHHHHHHhcCCceeccC-CCCChhHHHHHHHHHHHH
Q 007604          205 GNTVL--VY-IQ---------------DDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKK-PAGSPFTRMAKVIVAAIR  265 (596)
Q Consensus       205 ~~~~~--~~-l~---------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  265 (596)
                      .-+..  +. ..               +...-|..+.++++-.++..+-++...++..+.. +..+......+.++.-++
T Consensus       167 ~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k  246 (438)
T COG2270         167 LLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFK  246 (438)
T ss_pred             HHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence            43321  10 11               2223555565555443333322233222222111 111111111222222221


Q ss_pred             hcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHH-HHHhhhhh
Q 007604          266 KRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPI-LVATFVPS  344 (596)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~-~~~~~~~~  344 (596)
                      +.                                                         ++++.+.+.+.. ++..=..-
T Consensus       247 ~i---------------------------------------------------------~~~~~i~~FLiA~~~~~DGv~  269 (438)
T COG2270         247 EI---------------------------------------------------------RGRKNLVLFLIARFFYIDGVN  269 (438)
T ss_pred             HH---------------------------------------------------------hcccchHHHHHHHHHHHhhHH
Confidence            11                                                         111111111110 00000000


Q ss_pred             hhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHH
Q 007604          345 TMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHII  424 (596)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~  424 (596)
                      .... +.+.+-..    +.++.   ...-.++.....+..++++.+.+++-+|++.|           +.+.+++++..+
T Consensus       270 til~-~~~~fg~~----~~gls---~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----------~vl~~~lvi~~~  330 (438)
T COG2270         270 TILA-MGGVFGAA----DLGLS---STELLLIGIALSVVAALGAIIAGFLDERFGSK-----------PVLMIGLVILSI  330 (438)
T ss_pred             HHHH-HHHHHHHH----HcCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------eeehHHHHHHHH
Confidence            0000 00111000    00000   11111222223334444444555544444433           335555555544


Q ss_pred             HHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHH
Q 007604          425 IMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVG  504 (596)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig  504 (596)
                      ..+...+.+                     ....+.+.-+++|+..+.....+-+|..+.+|++..++..|+++++...+
T Consensus       331 ~~~~~~~~~---------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~  389 (438)
T COG2270         331 AALYLIFLE---------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAA  389 (438)
T ss_pred             HHHHHHHcc---------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHH
Confidence            433332221                     12233444588899999999999999999999999999999999999999


Q ss_pred             HHHHhHHHhhhhcccc
Q 007604          505 NFLSSFLLSTVSDITK  520 (596)
Q Consensus       505 ~~lg~~~~~~i~~~~~  520 (596)
                      .++||.+.+.+.+.++
T Consensus       390 S~~gp~lv~v~t~iTg  405 (438)
T COG2270         390 SFLGPFLVAVITQITG  405 (438)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999987663

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.28  E-value=6.3e-11  Score=128.33  Aligned_cols=176  Identities=15%  Similarity=0.086  Sum_probs=123.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcch--hHHH-HHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGR--YWTF-VIAFFF  109 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr--k~~~-~~~~~~  109 (596)
                      +.+|...+..++.....++...++|.|+++..|++..+.+.....+.++..++.+++|+++||+ ++  |+.. .....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence            4567777777777788888899999999998999999999998899999999999999999997 53  3322 222222


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      ..++.++..+...                      .+....++..++.|.+..........+..|.+|++.      |++
T Consensus       332 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~  383 (452)
T PRK11273        332 VTIATIVYWLNPA----------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGT  383 (452)
T ss_pred             HHHHHHHHHHhcc----------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhh
Confidence            3333332222110                      023333344444444433222333456779999886      999


Q ss_pred             hHHHHHHHHHHHHHH-hhhhhhhccccccchhhhHHHHHHHHHHHHHHH
Q 007604          190 FFNWWMFSIFFGTLL-GNTVLVYIQDDVGWALGYGLPALGLAIAIAIFL  237 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l-~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  237 (596)
                      +.++.+...++|+.+ +|.+.|++.+..||+..|++.++..+++++...
T Consensus       384 ~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        384 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            999999888888765 799999999999999999888776666655444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.28  E-value=1.3e-10  Score=123.01  Aligned_cols=154  Identities=16%  Similarity=0.176  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 007604           47 MAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGL  126 (596)
Q Consensus        47 ~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~  126 (596)
                      +.+.....++|.|+++ .|.++.+.+...+...++..++.++.|+++||+ |||+.+..+..+..++..... .      
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------  284 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------  284 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence            3444455778888875 699999999999999999999999999999998 999999888777776654432 1      


Q ss_pred             CCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhh
Q 007604          127 KPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGN  206 (596)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~  206 (596)
                                         .. .....+++.|++.+...|...+...|..|+++      ++...+.++...++|.++||
T Consensus       285 -------------------~~-~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp  338 (381)
T PRK03633        285 -------------------QA-AMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGP  338 (381)
T ss_pred             -------------------hH-HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                               11 22345566677766778888898999988764      67777777888899999999


Q ss_pred             hhhhhccccccchhhhHHHHHHHHHHHHH
Q 007604          207 TVLVYIQDDVGWALGYGLPALGLAIAIAI  235 (596)
Q Consensus       207 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  235 (596)
                      .++|++.+..||++.|.+.+...+++.+.
T Consensus       339 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        339 SFTAMLMQNYSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            99999999999999998877666555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.27  E-value=7.5e-11  Score=126.32  Aligned_cols=159  Identities=9%  Similarity=-0.037  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 007604           49 YHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKP  128 (596)
Q Consensus        49 ~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~  128 (596)
                      ..++..++|.|+++.+|.++.+.+++.+.+.++..++.++.|++.||. ++++.+..+.++..++.++.....       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence            345667889999888999999999999999999999999999999997 888888888887777776665432       


Q ss_pred             CCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhh
Q 007604          129 PPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTV  208 (596)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~  208 (596)
                                       +.....++.++.|++.+...+...+++.|.+|++.      |++.+++++...++|..+||.+
T Consensus       311 -----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l  367 (417)
T PRK10489        311 -----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAAL  367 (417)
T ss_pred             -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHH
Confidence                             45556667778888888777778889999999875      9999999999999999999999


Q ss_pred             hhhccccccchhhhHHHHHHHHHHHHHHHh
Q 007604          209 LVYIQDDVGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       209 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      .|++.+..|++..+++.++...+..++...
T Consensus       368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        368 LGGLGAMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            999999889888887766554443333333

>PRK12382 putative transporter; Provisional

Probab=99.26  E-value=9.6e-11  Score=124.34  Aligned_cols=160  Identities=9%  Similarity=0.126  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 007604           45 ERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLS  124 (596)
Q Consensus        45 ~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~  124 (596)
                      ....+..+..+.+.|+++ .|++  +.+.....+.++..++.++.|++.||+ ||||.+.++..+..++.++.....   
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~---  300 (392)
T PRK12382        228 QGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP---  300 (392)
T ss_pred             HHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc---
Confidence            344555666777888764 4554  345666677888889999999999998 999999998888888777665542   


Q ss_pred             CCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 007604          125 GLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLL  204 (596)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l  204 (596)
                                           +...+++..++.|++.+...+...+...|.+|+++      |++..++++...++|..+
T Consensus       301 ---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~i  353 (392)
T PRK12382        301 ---------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGV  353 (392)
T ss_pred             ---------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHH
Confidence                                 45566677888899988888888888899998875      999999999999999999


Q ss_pred             hhhhhhhccccccchhhhHHHHHHHHHHHHHHHh
Q 007604          205 GNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       205 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      +|.+.|++.+..||+..|.+.++..+++.+..+.
T Consensus       354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999888776666655443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.26  E-value=6.2e-10  Score=114.21  Aligned_cols=78  Identities=17%  Similarity=-0.093  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccc----------
Q 007604          146 QLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDD----------  215 (596)
Q Consensus       146 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~----------  215 (596)
                      +...+.++.+++|.|.+...+++.+++++..|+++      +.+..++.+.+..+|..++|.+++.+...          
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~   82 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA   82 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence            67788899999999999999999999999999886      89999999999999999999999977632          


Q ss_pred             ------ccchhhhHHHHHHH
Q 007604          216 ------VGWALGYGLPALGL  229 (596)
Q Consensus       216 ------~g~~~~f~~~~~~~  229 (596)
                            ..|+++|++.++..
T Consensus        83 ~~~~~~~~~~~~yl~ia~~~  102 (310)
T TIGR01272        83 TANAEAAKVHTPYLLLAGAL  102 (310)
T ss_pred             hhhHHHHHHHHHHHHHHHHH
Confidence                  36889988555443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.25  E-value=1e-10  Score=123.98  Aligned_cols=160  Identities=14%  Similarity=0.064  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      +..++....+.....+++..+++.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  318 (405)
T TIGR00891       240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLI  318 (405)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHH
Confidence            33344444444555566778899999999999999999999999999999999999999998 99999988876553322


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      +......                       .+...+.++.++.++..+...+..++++.|.+|+++      |++.+++.
T Consensus       319 ~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~  369 (405)
T TIGR00891       319 IPVFAIG-----------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFT  369 (405)
T ss_pred             HHHHHhC-----------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHH
Confidence            2221111                       134445555566677777777888899999999886      99999999


Q ss_pred             HHHHHHHHHHhhhhhhhcccccc-chhhhHH
Q 007604          195 MFSIFFGTLLGNTVLVYIQDDVG-WALGYGL  224 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~  224 (596)
                      +...++|..++|.+.|++.+..| |+..+..
T Consensus       370 ~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       370 YQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            99999999999999999999888 8766544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.25  E-value=7.9e-11  Score=127.65  Aligned_cols=172  Identities=11%  Similarity=0.018  Sum_probs=134.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhh-cchhHHHHHHH--HH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAY-LGRYWTFVIAF--FF  109 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~-~Grk~~~~~~~--~~  109 (596)
                      +.++..++..++..+.++....+++.|++ ++|++..+.+.+.+...++..++.+++|+++||. .++|+...++.  ++
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            44566666666777777888889999986 4799999999999999999999999999999984 24444444333  32


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      ..++.+++....                        +...+++.+++.|++.+...+...+++.|.+|+++      +++
T Consensus       320 ~~l~~ll~~~~~------------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~  369 (455)
T TIGR00892       320 NGLTHLLCALAG------------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSS  369 (455)
T ss_pred             HHHHHHHHHHhc------------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------Hhh
Confidence            333333333332                        56667778889999999999999999999999875      999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhccccc-cchhhhHHHHHHHHHHHHH
Q 007604          190 FFNWWMFSIFFGTLLGNTVLVYIQDDV-GWALGYGLPALGLAIAIAI  235 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~  235 (596)
                      .+++++...++|..+||.++|++.+.. +|+..|++.++..+++.+.
T Consensus       370 ~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       370 AVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            999999999999999999999998877 4999999888766555443

>TIGR00897 2A0118 polyol permease family

Probab=99.25  E-value=2.8e-10  Score=121.29  Aligned_cols=176  Identities=11%  Similarity=-0.033  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHH-HHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFV-IAFFFYL  111 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~-~~~~~~~  111 (596)
                      |.++...+..++....+++...++|.|++ ++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            44566666677777888888999999986 5899999999999999999999999999999998 9988764 3333333


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++.+.+......                   ...+....++..++.|++.+...+. .+...|..|+ +      |+++.
T Consensus       300 ~~~~~l~~~~~~-------------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~-~------~g~~~  352 (402)
T TIGR00897       300 IFTLALYYIPQH-------------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAPK-H------KGAAM  352 (402)
T ss_pred             HHHHHHHHHHHc-------------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCcc-h------hHHHH
Confidence            333332222100                   0013445556677778777765553 4556666553 3      99999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHH
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFL  237 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  237 (596)
                      ++.+...++|..++|.+.+++.+..||...+++.+++.+++.+...
T Consensus       353 g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       353 SVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999989999999988877666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.24  E-value=1.6e-10  Score=126.55  Aligned_cols=149  Identities=13%  Similarity=0.048  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 007604           51 GISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPP  130 (596)
Q Consensus        51 ~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  130 (596)
                      .+..++|.|+++.+|++..+.+.+.+...++..++.+++|+++||+ |||+++.++..+..++.++......        
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~--------  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG--------  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence            4567899999889999999999999999999999999999999998 9999988877665555444332210        


Q ss_pred             CCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 007604          131 CNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLV  210 (596)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~  210 (596)
                                    .+...+.+..++.+....+..+..++++.|.+|+++      |++.+++++...++|..+||.+.|
T Consensus       364 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g  423 (496)
T PRK03893        364 --------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGA  423 (496)
T ss_pred             --------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHH
Confidence                          133333333444333333445677888999999876      999999999999999999999999


Q ss_pred             hccccccchhhhHHHHHH
Q 007604          211 YIQDDVGWALGYGLPALG  228 (596)
Q Consensus       211 ~l~~~~g~~~~f~~~~~~  228 (596)
                      ++.+.+||+..+.+.+..
T Consensus       424 ~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        424 LIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHhccCChHHHHHHHHHH
Confidence            999999999887655443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.21  E-value=5.4e-10  Score=122.18  Aligned_cols=180  Identities=10%  Similarity=0.020  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHH-HHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVT-NWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      +.+....++.....+....+.+.|+.+.+|++..+.+.+.. ...++..++.+++|+++||+ |||+.+.++.++..++.
T Consensus       225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            33333334445555566677888888889999999999875 55689999999999999998 99998877666555544


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      +.........                    .+...+.+..++..+..|...++..++..+..+++.      +++.+++.
T Consensus       304 l~~~~l~~~~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~  357 (491)
T PRK11010        304 AGYWLLSITD--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALL  357 (491)
T ss_pred             HHHHHHHhcc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHH
Confidence            3322211000                    133334444555555555555777888899999886      78889999


Q ss_pred             HHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 007604          195 MFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPF  242 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  242 (596)
                      +...++|..+++.+.|++.+..||+..|.+.+++.+++++.....+++
T Consensus       358 ~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        358 SALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999888899999999999999998888777777666555443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.20  E-value=4.9e-10  Score=114.97  Aligned_cols=162  Identities=16%  Similarity=0.066  Sum_probs=124.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDK--LHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      +..+...+..++....--++..|++.|+.+.  +|+++.+.+...+.+..+..++.++++++.||+ |+||++.++..+.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence            3445444444444445557788999999854  799999999999999999999999999999998 9999998888777


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      +++.++.....                        +.. ...+.++.|++.+...|...+...+.+|++.       +++
T Consensus       219 ~~~~~l~~~~~------------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~a  266 (310)
T TIGR01272       219 VLLSIGAALTH------------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQG  266 (310)
T ss_pred             HHHHHHHHHcC------------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhh
Confidence            77665544321                        221 2235557899999999999999999988763       333


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHH
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALG  228 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~  228 (596)
                      .++. ....+|+++.|.+.|.+.|..|.+.+|++..++
T Consensus       267 sai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       267 SGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            3443 566799999999999999988988888766544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.20  E-value=6.6e-10  Score=114.93  Aligned_cols=178  Identities=12%  Similarity=0.102  Sum_probs=145.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +.++......++...+.|...+++..++++..|++....++++..|.++..+|.+++|+++||  +.|+++.....+.++
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            457777778888888889999999999999999999999999999999999999999999998  888888888777777


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      ..+.+.+..+                       +.....+..++.|++.+........-.++..|++       +..+.+
T Consensus       289 ~~l~l~~~~~-----------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~-------~~~a~s  338 (394)
T COG2814         289 ALLALTFTGA-----------------------SPALALALLFLWGFAFSPALQGLQTRLARLAPDA-------ADLAGS  338 (394)
T ss_pred             HHHHHHHhcc-----------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCc-------hHHHHH
Confidence            7766665531                       4445555556677776666666666666655554       899999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPF  242 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  242 (596)
                      ++....|+|..+|..++|.+.+++|+....+.+++..++++++.+...++
T Consensus       339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999998888887776654443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.20  E-value=6.4e-09  Score=111.30  Aligned_cols=359  Identities=13%  Similarity=0.129  Sum_probs=205.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhh-hhhHHHHH----HHHHHHhhhhhHHHhhhhcchhHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVK-SANNVTNW----GGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF  109 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~-~~~~~~~~----~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  109 (596)
                      ...+.+...+.....+........+.....+.+... .+......    .+...+.+++.|.++||+ |||..+...++.
T Consensus        23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~  101 (463)
T KOG2816|consen   23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHH
Confidence            333444444443333434455555655555443332 22333333    567888899999999999 999999999888


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHH--hccCcccchhhhhhccCCCCChhhhhhh
Q 007604          110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAV--GTGGTKPNILTIAADQFDEFEPKEKAHK  187 (596)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~~~~~~~~~~~~~~~~r  187 (596)
                      ..+..+...+.                         . +.+++   +.++  +.+.......++++|....++      |
T Consensus       102 ~~l~~~~~~~~-------------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R  146 (463)
T KOG2816|consen  102 TILPALCLLFQ-------------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------R  146 (463)
T ss_pred             HHHhHHHHHHH-------------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------H
Confidence            88777766654                         2 11222   3222  233445677788999998886      9


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCC-hhHHHHHHHHHHHHh
Q 007604          188 LSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGS-PFTRMAKVIVAAIRK  266 (596)
Q Consensus       188 ~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  266 (596)
                      ...+++.+.....+..++|.+++++.+..|...+|+++++..++..+..+...|+...++.+.. +.             
T Consensus       147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~-------------  213 (463)
T KOG2816|consen  147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL-------------  213 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc-------------
Confidence            9999999999999999999999999999999999999998887777666555444332221110 00             


Q ss_pred             cCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhh
Q 007604          267 RNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTM  346 (596)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~  346 (596)
                          ....+......+.                   -|          .+....+  .+..|..+.++...+  ......
T Consensus       214 ----~~~~~~~~~~~~~-------------------~~----------~~~~~~~--~~~~r~~l~l~l~~~--~~~~~~  256 (463)
T KOG2816|consen  214 ----RELTPGSLDSSHV-------------------AD----------AFQSLTK--VGPDRLLLLLLLVAF--LSSLPE  256 (463)
T ss_pred             ----cccCCCcccchhh-------------------hh----------hhhhhcc--cCCCccchHHHHHHH--HHHHHH
Confidence                0000000000000                   00          0000000  122233333222211  111111


Q ss_pred             hhccc---ceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHh-HHHHHhhhcccCCCCCCChhHHHHHHHHHH
Q 007604          347 LAQIN---TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYD-RCFVRITRRWTKNPRGITLLQRMGIGLVIH  422 (596)
Q Consensus       347 ~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~  422 (596)
                      .....   .++......-+..       .-+.+.........+...+.- .+...++.|           +.+.+|+..-
T Consensus       257 ~~~~~~~~~~yl~~~f~w~~~-------~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~-----------~~i~lGl~~~  318 (463)
T KOG2816|consen  257 AGGASDVLLLYLKAKFGWNKK-------EFSDLLSLVSILGIISQLLLLPLLSSILGEK-----------RLISLGLLSE  318 (463)
T ss_pred             hcCceeEEEEEEeeecCcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hHhhHHHHHH
Confidence            11111   1222211111111       111122222222222222111 222222333           3477788888


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHh
Q 007604          423 IIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLG  502 (596)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~  502 (596)
                      .+...+.++.+                     +. |.............+..|...+++...+.++.+|...++......
T Consensus       319 ~~~~~~~af~~---------------------~~-w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~  376 (463)
T KOG2816|consen  319 FLQLLLFAFAT---------------------ET-WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEG  376 (463)
T ss_pred             HHHHHHHHHhc---------------------cc-hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHH
Confidence            88888888764                     22 222233445555668889999999999999999999999999999


Q ss_pred             HHHHHHhHHHhhhhccc
Q 007604          503 VGNFLSSFLLSTVSDIT  519 (596)
Q Consensus       503 ig~~lg~~~~~~i~~~~  519 (596)
                      +.+.+++.+.+.+...+
T Consensus       377 l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  377 LSGVVSPALYGNIFALT  393 (463)
T ss_pred             HhhhhhHHHHHHHHHHH
Confidence            99999999999887665

>PRK15075 citrate-proton symporter; Provisional

Probab=99.19  E-value=3.1e-10  Score=122.28  Aligned_cols=153  Identities=10%  Similarity=0.047  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHH-HH
Q 007604           39 VVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMI-VL  117 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~-~~  117 (596)
                      +...++....++.+..++|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||++++++.++..+... ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            3444455667778889999999988999999999888889999999999999999998 999998876554433221 11


Q ss_pred             HHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHH
Q 007604          118 ALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFS  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  197 (596)
                      .....                     ..+.....+..++.+++.+...+...++..|.+|++.      |+++.++.+..
T Consensus       323 ~~~~~---------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~  375 (434)
T PRK15075        323 SWLVA---------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSL  375 (434)
T ss_pred             HHHHc---------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHH
Confidence            11110                     0022223333445566666667777788999999986      99999985444


Q ss_pred             H-HHHHHHhhhhhhhccccccch
Q 007604          198 I-FFGTLLGNTVLVYIQDDVGWA  219 (596)
Q Consensus       198 ~-~ig~~l~~~~~~~l~~~~g~~  219 (596)
                      . .+++.++|.+.+++.+..|++
T Consensus       376 ~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        376 ATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHhhhHHHHHHHHHHhcCCc
Confidence            4 446778999999998887754

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.18  E-value=4.1e-10  Score=115.35  Aligned_cols=185  Identities=14%  Similarity=0.033  Sum_probs=148.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      .+..|.+++..+..--++-+...+++.|+++++|.++.+++.....+.+...+..+.+|+|+||+ |.+|++.+....++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            35678888888877778888999999999999999999999999999999999999999999998 99999998888888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++..+.....+....                 ..+...+++..+.+++..|.-...+..++...+|++       -+...
T Consensus       296 ~~~~~l~~~~~~~~~-----------------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~  351 (417)
T COG2223         296 LAAALLSLFLTGFGH-----------------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVT  351 (417)
T ss_pred             HHHHHHHcccccccc-----------------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHH
Confidence            888777665311100                 124445555555667777777777888888888875       78899


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHHHhcCC
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIFLAGTP  241 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~  241 (596)
                      ++...+.++|+..-|...+...+..| +..+|++.....+.+.++.+....
T Consensus       352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~  402 (417)
T COG2223         352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA  402 (417)
T ss_pred             HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888988888888777 899999888777766665555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.17  E-value=9.9e-10  Score=118.65  Aligned_cols=185  Identities=12%  Similarity=0.100  Sum_probs=149.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchh--HHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRY--WTFVIAFF  108 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk--~~~~~~~~  108 (596)
                      +.|.+...++..++.+-+...+......|.++.+|++..+...+.....+.+.+|+++.|++.||+ |.|  ++++++++
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            345666667777777778888889999999999999999999999999999999999999999998 998  88888877


Q ss_pred             HHHHHHHHHHH--HhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhh
Q 007604          109 FYLMGMIVLAL--SVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAH  186 (596)
Q Consensus       109 ~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  186 (596)
                      +..+..+...+  ..+.                  .+..+.+.+++.-++.|+..|..++..-++.+++.|+++      
T Consensus       358 ~~~~i~~~g~~G~~~~~------------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------  413 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSF------------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------  413 (477)
T ss_pred             HHHHHHHHHHHHhhhcc------------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------
Confidence            66332222222  1100                  011256667888889999999999999999999999986      


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHHHhcC
Q 007604          187 KLSFFNWWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIFLAGT  240 (596)
Q Consensus       187 r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  240 (596)
                      .+..|+++.......+.+||.+.|.+.+..| .|..+....++.++++++++..+
T Consensus       414 e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  414 EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            8999999999999999999999999988876 88888877777777777665543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.15  E-value=8.6e-10  Score=118.77  Aligned_cols=175  Identities=8%  Similarity=-0.071  Sum_probs=112.0

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEV-FERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        35 ~~~~~~~~~-~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      .+.+....+ +....+|+...++|.|+.+++|++..+.+...+...++..++.++.|+++||+ |||+.+.++.++..+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~  322 (432)
T PRK10406        244 AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALF  322 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            343333333 34677888999999999989999999999888888888889999999999998 9999887765544333


Q ss_pred             HHHHHH-HhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          114 MIVLAL-SVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       114 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      ...... ....                     .+....+....+..++.+...+....+.+|.+|++.      |+++.+
T Consensus       323 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g  375 (432)
T PRK10406        323 TVPILSALQNV---------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVG  375 (432)
T ss_pred             HHHHHHHHHcC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhh
Confidence            222211 1100                     012211111122222333334556788899999987      999999


Q ss_pred             HHHHHHHH-HHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHHHh
Q 007604          193 WWMFSIFF-GTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       193 ~~~~~~~i-g~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      +.+...++ ++...|.+.+++. ..| |...+++.++..+++.+..+.
T Consensus       376 ~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        376 LSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            97765554 3445777777664 345 555666555555555544443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.15  E-value=7e-10  Score=106.91  Aligned_cols=167  Identities=13%  Similarity=0.062  Sum_probs=133.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHH
Q 007604           29 RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFF  108 (596)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  108 (596)
                      +...+.+|.+...+++.+...+=....-+.++++.+|+|+..++.+.+.......+..++.|.++|++ ||+-..+.+.+
T Consensus       260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~  338 (459)
T KOG4686|consen  260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASAC  338 (459)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHH
Confidence            34446788888888887777777777888999999999999999999999999999999999999999 99988877765


Q ss_pred             H-HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhh
Q 007604          109 F-YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHK  187 (596)
Q Consensus       109 ~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  187 (596)
                      + ...+-..+.++.                          ..=+.+..++|+.......+.++.++...|+++      .
T Consensus       339 ~~tl~~H~~l~Ft~--------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------L  386 (459)
T KOG4686|consen  339 ILTLLGHSGLFFTF--------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------L  386 (459)
T ss_pred             HHHHHHhhhHHhhh--------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------h
Confidence            5 444455555542                          112456667888888777778899999999986      9


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhcccccc---chhhhHHHHHH
Q 007604          188 LSFFNWWMFSIFFGTLLGNTVLVYIQDDVG---WALGYGLPALG  228 (596)
Q Consensus       188 ~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g---~~~~f~~~~~~  228 (596)
                      |++++..+...|+|-++-|++.|.+.+..|   |--+|.+....
T Consensus       387 GTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~  430 (459)
T KOG4686|consen  387 GTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL  430 (459)
T ss_pred             cchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence            999999999999999999999999988755   44455554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.15  E-value=7.4e-10  Score=119.81  Aligned_cols=168  Identities=9%  Similarity=-0.051  Sum_probs=117.7

Q ss_pred             HHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 007604           52 ISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPC  131 (596)
Q Consensus        52 ~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  131 (596)
                      +..+.+.+ .+++|++..+.++......++..++.+++|+++||+ |||+.+.+++++..++.+++.........     
T Consensus       303 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  375 (481)
T TIGR00879       303 IMYYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVT-----  375 (481)
T ss_pred             hHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccC-----
Confidence            34444444 457899998888999999999999999999999998 99999999988887777666532110000     


Q ss_pred             CCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 007604          132 NDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVY  211 (596)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~  211 (596)
                              ..+...+...+....+..+.......+....+..|.+|+++      |+++.++.+...++|.+++|.+.++
T Consensus       376 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~  441 (481)
T TIGR00879       376 --------GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPT  441 (481)
T ss_pred             --------CcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    00000012222222222222222334667778899999886      9999999999999999999999999


Q ss_pred             ccccccchhhhHHHHHHHHHHHHHHHhcC
Q 007604          212 IQDDVGWALGYGLPALGLAIAIAIFLAGT  240 (596)
Q Consensus       212 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  240 (596)
                      +.+..+|++.|++.+++.+++.++.++..
T Consensus       442 ~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  470 (481)
T TIGR00879       442 MLESIGVGGVFIFFGGLNVLGLIFVYFFL  470 (481)
T ss_pred             HHHhcCccceehhHHHHHHHHHHHHheec
Confidence            98888999999887766555555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.14  E-value=2.4e-10  Score=119.23  Aligned_cols=154  Identities=12%  Similarity=0.107  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGIS-SNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      .++..+...++....+++.. .+.|.|.++.+|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  289 (365)
T TIGR00900       211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGL  289 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHH
Confidence            44555555555566666565 7788888877999999999999999999999999999999998 999999888777666


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +..+.....+                       +...+++..++.|++.+...+...+++.|.+|+++      |++..+
T Consensus       290 ~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~  340 (365)
T TIGR00900       290 AILVVGLTPP-----------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFG  340 (365)
T ss_pred             HHHHHHhhch-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence            6665554420                       25567778888999999999999999999999875      999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccccc
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVG  217 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g  217 (596)
                      +.+...++|..++|.+.|++.+..|
T Consensus       341 ~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       341 AQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999877543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.14  E-value=6.9e-10  Score=119.74  Aligned_cols=177  Identities=13%  Similarity=0.083  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +.++...+..++.....+++..++|.|+++..|+++.+.++....+.++..++.+++|+++||+ |+++....+..+..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            3466666666777777788899999999988999999999999999999999999999999998 755433333322221


Q ss_pred             ---HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          113 ---GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       113 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                         +.+.......                      .+........++.|++..+..........|.+|+++      |++
T Consensus       330 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  381 (438)
T TIGR00712       330 VTIAVIVYWMNPA----------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT  381 (438)
T ss_pred             HHHHHHHHHhcCC----------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eee
Confidence               1111111100                      022223333444444433322233346778899876      999


Q ss_pred             hHHHHHHHHHHHH-HHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHh
Q 007604          190 FFNWWMFSIFFGT-LLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       190 ~~~~~~~~~~ig~-~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      +.++.+...++|+ ++||.+.|++.+..||...|++.++..+++.+..+.
T Consensus       382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            9999988888875 689999999999889999988777665555544443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.14  E-value=9.5e-09  Score=113.09  Aligned_cols=204  Identities=16%  Similarity=0.166  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      +..+.....+......+.+.....-+++.++++..+.|++.+.+-++..+...+..+++-|. -|-|.+-++.+++++|.
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHH
Confidence            34344444444444447777788889999999999999999999999999999999999997 88899999999999999


Q ss_pred             HHHHHHhhccCC-------------CC------CCCC-------CCCCcccc-ccccc-hhHHHHHHHHHHHHhccCccc
Q 007604          115 IVLALSVSLSGL-------------KP------PPCN-------DINSQDCR-KASTL-QLGTFFAALYTLAVGTGGTKP  166 (596)
Q Consensus       115 ~~~~~~~~~~~~-------------~~------~~~~-------~~~~~~~~-~~~~~-~~~~~~~~~~l~g~g~g~~~~  166 (596)
                      ++.++-..+...             .+      ..|+       +.+....+ ..++. -+.+++++.++.|+|.....+
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            998765221100             00      0011       11111111 12222 233677889999999999999


Q ss_pred             chhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccc------------------ccc-chhhhHHHHH
Q 007604          167 NILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD------------------DVG-WALGYGLPAL  227 (596)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~------------------~~g-~~~~f~~~~~  227 (596)
                      ...+|+=|...+++      -...+++.+.+..+|.++|.+++++...                  ..| |+..|++++.
T Consensus       257 lGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~  330 (735)
T KOG3626|consen  257 LGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGA  330 (735)
T ss_pred             CCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHH
Confidence            99999999888876      7888899999999999999988886521                  122 8888888887


Q ss_pred             HHHHHHHHHHhcCCceec
Q 007604          228 GLAIAIAIFLAGTPFYRH  245 (596)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~  245 (596)
                      +.++..+.+++.++..++
T Consensus       331 ~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  331 LLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHHHHHHhCcccCcc
Confidence            777777777776665543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.13  E-value=1.8e-09  Score=114.23  Aligned_cols=167  Identities=5%  Similarity=-0.091  Sum_probs=129.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |.++...+..++....+.....+++.|++ +.|.++.+.+.+.+...++..+..++.|++.||+ |+|+.+.++.++..+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            34555555555555666667778888986 5899999999999988899999999999999998 999999999888888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.++....+                        +.+.+++..++.|++.+...+....+..+. ++++      +++..+
T Consensus       283 ~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~  331 (382)
T PRK11128        283 RWGLMGSTT------------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQA  331 (382)
T ss_pred             HHHHHHhhh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHH
Confidence            776665543                        666777888899999888888888888776 4433      677788


Q ss_pred             HHH-HHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHH
Q 007604          193 WWM-FSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAI  233 (596)
Q Consensus       193 ~~~-~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  233 (596)
                      .+. ....+|..+||.++|++.+..|+. .|+..++..++++
T Consensus       332 ~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~  372 (382)
T PRK11128        332 LYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence            765 556778899999999999988874 5555554444443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.12  E-value=1.2e-09  Score=119.05  Aligned_cols=174  Identities=9%  Similarity=-0.026  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhH-----HHH--HH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYW-----TFV--IA  106 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~-----~~~--~~  106 (596)
                      ..|.+.+..++.....+....++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+     ...  +.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~  331 (476)
T PLN00028        253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV  331 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence            345555554455555566778899999989999999999999999999999999999999998 8762     212  22


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhh
Q 007604          107 FFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAH  186 (596)
Q Consensus       107 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  186 (596)
                      ..+..++.++.....                        +.....+..++.+++.+...+...++..+..|+ .      
T Consensus       332 ~~l~~i~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------  380 (476)
T PLN00028        332 QTLGGVFCIWLGRAN------------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSRR-S------  380 (476)
T ss_pred             HHHHHHHHHHhcccc------------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccChh-h------
Confidence            222222222221111                        333344444555555555555556666666553 3      


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcC
Q 007604          187 KLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGT  240 (596)
Q Consensus       187 r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  240 (596)
                      |+...++.+...++|+.++|.+.+ ..+..+|+..|++.++..+++.++.++.+
T Consensus       381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            899999887777777777776544 22334699999888877776666655543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.11  E-value=6.4e-10  Score=116.50  Aligned_cols=162  Identities=18%  Similarity=0.213  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH--H
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF--Y  110 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~--~  110 (596)
                      +.++.+.+..++.....+++..+++.|+.+.+|.+..+.+...+.+.++..++.+++|+++||..+||+........  .
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            34666666677777777788889999999999999999999999999999999999999999862444433222111  1


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++.......   +                   ..+.....+..++.|+..+...+....+..|.+|++.      |+++
T Consensus       296 ~~~~~~~~~~---~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  347 (379)
T TIGR00881       296 IVSLLVYWLN---P-------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTA  347 (379)
T ss_pred             HHHHHHHhcC---c-------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHH
Confidence            1111111110   0                   0133344455556666555556666778899999886      9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccchhhh
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVGWALGY  222 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f  222 (596)
                      .++.+...++|..++|.+.|++.+..||+..|
T Consensus       348 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       348 AGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999999999999998764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.11  E-value=1.4e-09  Score=118.27  Aligned_cols=178  Identities=14%  Similarity=0.022  Sum_probs=123.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHH--------
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTF--------  103 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~--------  103 (596)
                      ++.++...+..++....++....++|.|+.+.+|.+..+.++..+...++..++.+++|+++||+ ++|+..        
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            35678888888888888999999999999999999999999999999999999999999999997 654321        


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhh
Q 007604          104 VIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKE  183 (596)
Q Consensus       104 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  183 (596)
                      ..+......+..+..... ..                    .+.....+...+.+.+.++..+.......|..|. .   
T Consensus       339 ~~~~~~~~~~~~~~~~~~-~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~---  393 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPY-LS--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F---  393 (465)
T ss_pred             HHHHHHHHHHHHHHHHHH-cC--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H---
Confidence            111111111111111110 00                    0222333344444555555555555566676665 3   


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhhhhhhhccccc---cchhhhHHHHHHHHHHHHHHHh
Q 007604          184 KAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDV---GWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       184 ~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                         ++...++.+...++|+.++|.+.|++.+..   +|+..|.+.++..+++.+....
T Consensus       394 ---~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       394 ---LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence               899999999999999999999999887643   3888888887766666555443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.11  E-value=2.8e-09  Score=112.83  Aligned_cols=172  Identities=9%  Similarity=-0.009  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      .+......++.....+....+++.|+.+.+|.++.+.+...+...++..++.++.|++.||+ |+|+.+..+..+..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            34444444444445555566778888888999999999999999999999999999999998 99999998888877776


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      ++.....+                       +.....+..++.++|.++..+.......+..++++     .++..  ..
T Consensus       280 ~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~  329 (382)
T PRK10091        280 LMLFFFGG-----------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGE-----LLGAA--GG  329 (382)
T ss_pred             HHHHHHHh-----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcch-----HHHHH--HH
Confidence            55543221                       22333444445555554444433433333333321     14443  23


Q ss_pred             HHHHHHHHHHhhhhhhhcccc-ccchhhhHHHHHHHHHHHHHHH
Q 007604          195 MFSIFFGTLLGNTVLVYIQDD-VGWALGYGLPALGLAIAIAIFL  237 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~~~  237 (596)
                      +...++|..+||.++|++.+. .+|+..+.+.++..++.+..+.
T Consensus       330 ~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        330 QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            566789999999999998874 6799999888766555554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.10  E-value=1.5e-09  Score=116.05  Aligned_cols=165  Identities=9%  Similarity=-0.023  Sum_probs=116.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHH-HHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDK-LHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTF-VIAFFFY  110 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~-~~~~~~~  110 (596)
                      +.++...+..++....++++..++|.|+++. .|.+..+++.......++..++.+++|+++||+ |||+.. .....+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            3466677777778888889999999999863 477888999999999999999999999999998 877643 3333333


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++..+ ....  .                     +....+.+..+.++|.....+.......|.+|+++      |+.+
T Consensus       321 ~~~~~~-~~~~--~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a  370 (412)
T TIGR02332       321 AAGWLL-ASAT--D---------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIA  370 (412)
T ss_pred             HHHHHH-HHhc--C---------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHH
Confidence            333222 1111  0                     11112222223333333333444455567777775      9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHH
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALG  228 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~  228 (596)
                      +++.+...++|++++|.+.|.+.+..| |+..|++.++.
T Consensus       371 ~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       371 IAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999999998775 99998876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10504 putative transporter; Provisional

Probab=99.10  E-value=2.3e-09  Score=116.75  Aligned_cols=157  Identities=9%  Similarity=-0.048  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      .+...+...++..+++.......|.|++..+|.++.+.+++.....++..++.++.|+++||+ |||+++.++..+..++
T Consensus       262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~  340 (471)
T PRK10504        262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV  340 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            345555556666666655666788888888999999999999988888888999999999998 9999999888877777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      .++......                     ..+...+.+..++.|++.+...+....+..+.+|+++      ++.++++
T Consensus       341 ~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~  393 (471)
T PRK10504        341 SLLFMLVAL---------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSL  393 (471)
T ss_pred             HHHHHhccc---------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHH
Confidence            665554310                     0123334455667788888888888899999999886      9999999


Q ss_pred             HHHHHHHHHHHhhhhhhhccccccc
Q 007604          194 WMFSIFFGTLLGNTVLVYIQDDVGW  218 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l~~~~g~  218 (596)
                      ++....+|..+|+.++|.+.+..|+
T Consensus       394 ~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        394 LSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999887665554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.10  E-value=4.5e-08  Score=105.13  Aligned_cols=161  Identities=12%  Similarity=0.050  Sum_probs=115.9

Q ss_pred             HHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhh--cc--hhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 007604           56 LVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAY--LG--RYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPC  131 (596)
Q Consensus        56 l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~--~G--rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  131 (596)
                      ...|+++++|+++++.....+...+-. ..-++.|.++|-+  +|  ||+-++++.++..++.+.++.....        
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~--------   82 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS--------   82 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc--------
Confidence            445788999999999888777665544 5567779999987  34  4455555666665555555443210        


Q ss_pred             CCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 007604          132 NDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVY  211 (596)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~  211 (596)
                                  ..+.....+..++..+|......++-++..|....+. .   .|+...++.+....+|++++..+.|.
T Consensus        83 ------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-~---~~g~lqS~~~~~~~~G~lv~~~l~G~  146 (433)
T PF03092_consen   83 ------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREP-E---SRGDLQSFVWGVRSVGSLVGSLLSGP  146 (433)
T ss_pred             ------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-c---hhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                        0134445566677889999999999999999987664 1   27888888888999999999999999


Q ss_pred             ccccccchhhhHHHHHHHHHHHHHHHhcCC
Q 007604          212 IQDDVGWALGYGLPALGLAIAIAIFLAGTP  241 (596)
Q Consensus       212 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  241 (596)
                      +.+..+++..|.+.+++..+..+..+...+
T Consensus       147 l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  147 LLDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             hhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            999999999999888765555444443333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.09  E-value=1.4e-09  Score=115.67  Aligned_cols=169  Identities=12%  Similarity=0.034  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKL---HHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      ++..++..++....+.....+.+.|+.+.+   +.+..+.+.+.+...+...++.++.|++.||+ |||+.+.++.++..
T Consensus       217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~  295 (396)
T TIGR00882       217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMS  295 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHH
Confidence            344444444444444445566788887665   45566778888888888999999999999998 99999999888888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++..+...+.                        +.+.+++..++.|++.+........+..+..|++.      +++..
T Consensus       296 l~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~  345 (396)
T TIGR00882       296 VRIIGSSFAT------------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIY  345 (396)
T ss_pred             HHHHHHHhcC------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEee
Confidence            7776655442                        55666777888888876655555666777777664      67766


Q ss_pred             HH-HHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHH
Q 007604          192 NW-WMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIA  234 (596)
Q Consensus       192 ~~-~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  234 (596)
                      +. ++....+|..+++.++|++.+..||+.+|.+.++..++..+
T Consensus       346 ~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       346 LIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            65 67788999999999999999989999999887766554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.09  E-value=6.8e-09  Score=110.74  Aligned_cols=170  Identities=10%  Similarity=-0.076  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      .++...+..++.....+......|.|+.+.+|+++.+.+.......++..++.++.|+++||+ |||+.+.++.++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            455555554555555556666788888888999999999888878888999999999999998 9999999998888887


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      .++........                   +.+...+.++.++.|+|.+...+..........| ++      |++..+.
T Consensus       295 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~  348 (406)
T PRK15402        295 LLLAALATVIS-------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VS------KGTVSAA  348 (406)
T ss_pred             HHHHHHHHHcc-------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-cc------ccHHHHH
Confidence            77766542100                   1144456677888888888877766665544433 43      9999999


Q ss_pred             HHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHH
Q 007604          194 WMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLA  230 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~  230 (596)
                      +++...+|..+|+.+.+++.+..++....+..++..+
T Consensus       349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~  385 (406)
T PRK15402        349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGL  385 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHH
Confidence            9999999999999999999887776655555444333

>TIGR00895 2A0115 benzoate transport

Probab=99.08  E-value=1.4e-09  Score=114.81  Aligned_cols=147  Identities=10%  Similarity=0.022  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      ..+.+.+..++....++.+..++| ++.+++|.+..+.+...+...++..++.+++|+++||+ |||+.+....+....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  328 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence            344445555566677777777888 66678899999999999999999999999999999998 9995554443333333


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      .++.....                        +....++..++.|++.+...+...++..|.+|+++      |+++.++
T Consensus       329 ~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~  378 (398)
T TIGR00895       329 VLVGSTLF------------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGW  378 (398)
T ss_pred             HHHHHHhh------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHH
Confidence            33222111                        44556677788899999999999999999999886      9999999


Q ss_pred             HHHHHHHHHHHhhhhhhhc
Q 007604          194 WMFSIFFGTLLGNTVLVYI  212 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l  212 (596)
                      .+....+|..+||.+.|++
T Consensus       379 ~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       379 AIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHhHHhc
Confidence            9999999999999998875

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.08  E-value=4.2e-09  Score=113.00  Aligned_cols=150  Identities=15%  Similarity=-0.032  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 007604           46 RMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSG  125 (596)
Q Consensus        46 ~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~  125 (596)
                      ....+.+..++|.|+++ .|.++.+.+.+.+...++..++.++.|+++||+ |||+++..+.++..++.++......   
T Consensus       244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~---  318 (426)
T PRK12307        244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ---  318 (426)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc---
Confidence            33444567788988875 699999999999999999999999999999998 9999998888776665544433210   


Q ss_pred             CCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHh
Q 007604          126 LKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLG  205 (596)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~  205 (596)
                                         .....+.+..+..+.+..+..+..+.++.|.+|++.      |+++.++.+...++|+.++
T Consensus       319 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~g  373 (426)
T PRK12307        319 -------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFN  373 (426)
T ss_pred             -------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHH
Confidence                               012111122222233333445667788899999886      9999999999999999999


Q ss_pred             hhhhhhccccccchhhhHHH
Q 007604          206 NTVLVYIQDDVGWALGYGLP  225 (596)
Q Consensus       206 ~~~~~~l~~~~g~~~~f~~~  225 (596)
                      |.+.|++.+..|+....++.
T Consensus       374 p~~~g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        374 SMAATWLGITMGLGAALTFI  393 (426)
T ss_pred             HHHHHHHHHcccHHHHHHHH
Confidence            99999999888866544333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.07  E-value=1.7e-11  Score=134.12  Aligned_cols=199  Identities=16%  Similarity=0.143  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 007604           40 VYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLAL  119 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~  119 (596)
                      +..++. ....+.+.....-+++.++++.++.|++.+.+-++..+..++..++++|. -|-|-+-++.+++++|.++.++
T Consensus        10 ~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   10 LLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc
Confidence            333344 66667777777788999999999999999999999999999999999997 8888888999999999999886


Q ss_pred             HhhccCCCC-C-----CCCC-CCCccc-------------------cccccchhHHHHHHHHHHHHhccCcccchhhhhh
Q 007604          120 SVSLSGLKP-P-----PCND-INSQDC-------------------RKASTLQLGTFFAALYTLAVGTGGTKPNILTIAA  173 (596)
Q Consensus       120 ~~~~~~~~~-~-----~~~~-~~~~~~-------------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  173 (596)
                      -..+..... .     .|.. .....|                   +.........++++.++.|+|.....+...+|+=
T Consensus        88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD  167 (539)
T PF03137_consen   88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID  167 (539)
T ss_dssp             ----------------------------------------------------------------SSS-------------
T ss_pred             cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence            543221110 0     0000 000111                   1111123567888999999999999999999999


Q ss_pred             ccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccc---------------------ccc-chhhhHHHHHHHHH
Q 007604          174 DQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD---------------------DVG-WALGYGLPALGLAI  231 (596)
Q Consensus       174 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~---------------------~~g-~~~~f~~~~~~~~~  231 (596)
                      |..++++      -+...++.+....+|.++|.++++....                     +.| |+..|.+.++..++
T Consensus       168 Dnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l  241 (539)
T PF03137_consen  168 DNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL  241 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            9999886      7888899999999999999888875531                     123 77778777776666


Q ss_pred             HHHHHHhcCCceecc
Q 007604          232 AIAIFLAGTPFYRHK  246 (596)
Q Consensus       232 ~~~~~~~~~~~~~~~  246 (596)
                      ..+.+++.+|+.++.
T Consensus       242 ~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  242 SAIPLFFFPKKLPGT  256 (539)
T ss_dssp             ---------------
T ss_pred             HHHHHHcCCccCCCc
Confidence            666666666665544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.06  E-value=1.3e-07  Score=95.99  Aligned_cols=152  Identities=14%  Similarity=0.068  Sum_probs=105.5

Q ss_pred             HHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcc
Q 007604           59 YLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQD  138 (596)
Q Consensus        59 yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (596)
                      .+.++.|++..|++.+.........+..++.|.++||+ |||+..++..+++.++.+.-- +                  
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~------------------  118 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-S------------------  118 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-c------------------
Confidence            34468999999999999999999999999999999998 999999988888887775432 2                  


Q ss_pred             ccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCC-ChhhhhhhhhhHHHHH-HHHHHHHHHhhhhhhhccccc
Q 007604          139 CRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEF-EPKEKAHKLSFFNWWM-FSIFFGTLLGNTVLVYIQDDV  216 (596)
Q Consensus       139 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~-~~~~ig~~l~~~~~~~l~~~~  216 (596)
                            .+...++++|++.|++......+..+.......++ -|++  ..+.-++... +.+.+-++.+.+++.++.+..
T Consensus       119 ------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~  190 (354)
T PF05631_consen  119 ------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWF  190 (354)
T ss_pred             ------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence                  17889999999999999999888877644332222 1111  1333333322 222233344444555555544


Q ss_pred             c--chhhhHHHHHHHHHHHHHHHh
Q 007604          217 G--WALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       217 g--~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      +  ...+|..+.++.+++.+++..
T Consensus       191 ~~g~vaPF~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  191 GFGPVAPFDAAIVLLAVAAVLILK  214 (354)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHh
Confidence            4  478888888777666655443

>TIGR00896 CynX cyanate transporter

Probab=99.06  E-value=4.1e-09  Score=110.23  Aligned_cols=156  Identities=15%  Similarity=0.116  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +..+.+.+..++....+++...++|.|+++ .|.+..+.+.+.+.+.++..++.++.|+++||+-+||+++.++..+.++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            345555555566677778888999999975 7999999999999999999999999999999983456677777777777


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.+.+....                        +.... ...++.|++.|...|...+...+..++++     +++...+
T Consensus       276 ~~~~~~~~~------------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~  325 (355)
T TIGR00896       276 GLCGLLFAP------------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSA  325 (355)
T ss_pred             HHHHHHHhh------------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHH
Confidence            776665442                        11111 23457799999988888787776666543     3788888


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccccc-ch
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVG-WA  219 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g-~~  219 (596)
                      +.+...++|..++|.+.|++.+..| |.
T Consensus       326 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       326 MAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            8888889999999999999988765 44

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.06  E-value=5.3e-09  Score=110.96  Aligned_cols=175  Identities=15%  Similarity=0.036  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHH-HHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWG-GTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      .+..+...++...+......+.+.|+.+ .|+++.+.+++..... ....++.+++|++.||+ |+|+.+.++..+..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            3444444455555566666778888875 7999999999888775 46677789999999998 9999998877665333


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      .+......... .                 ..+....+....+.+++.|...+...+...+..++++     .+++.+++
T Consensus       288 ~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~  344 (390)
T TIGR02718       288 ALLWFAQAAFW-L-----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD-----QAGTDVTA  344 (390)
T ss_pred             HHHHHHHHHcc-c-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----chHHHHHH
Confidence            32222111000 0                 0123333444445566677777777778777777632     38999999


Q ss_pred             HHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHH
Q 007604          194 WMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIA  234 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  234 (596)
                      .+...++|..+||.++|++.+..||+..|++.++..+++++
T Consensus       345 ~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       345 VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999989999999887765555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.02  E-value=3.2e-09  Score=114.26  Aligned_cols=162  Identities=13%  Similarity=0.102  Sum_probs=122.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |.++.+++..++..+.++....+.+.|.+..++ ++.+.+.+.+...++..++.++.|+++||+ |||+++.++.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            445556666666666666555555666655556 566777778888899999999999999998 999999999888888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCCh-hhhhhhhhhH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEP-KEKAHKLSFF  191 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~  191 (596)
                      +.++..+..                       .+...+++..++.+++.+...+...++++|..|.++. ..++++|.++
T Consensus       300 ~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  356 (437)
T TIGR00792       300 GYLIFFFAG-----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVY  356 (437)
T ss_pred             HHHHHHHcc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHH
Confidence            776665432                       1445566677788899999899999999998874321 1122478999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccccch
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVGWA  219 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g~~  219 (596)
                      +++++...+|..+++.+.|++.+..||.
T Consensus       357 ~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       357 SVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999887766663

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10054 putative transporter; Provisional

Probab=99.01  E-value=3.6e-09  Score=112.49  Aligned_cols=173  Identities=12%  Similarity=0.018  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTD--KLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      .++...+..++..+.+.....+.+.|+..  +.+.+....+.+............++.|++.||+ ++|+.+.+++.+..
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~  285 (395)
T PRK10054        207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV  285 (395)
T ss_pred             eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence            34444455555555554455566666643  3456666777788877777777888999999998 99999999988888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++.+......+                       +.+.+.+..++.++|.+...|...+++.+..|++.      |++++
T Consensus       286 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~  336 (395)
T PRK10054        286 IGLVGFIFSGN-----------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYF  336 (395)
T ss_pred             HHHHHHHHcch-----------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehH
Confidence            87766654321                       45556667788999988888888899999999876      88888


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHH
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFL  237 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  237 (596)
                      +..+ ...+|..+||.++|++.+..|....|++.++...++.++.+
T Consensus       337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            8654 56689999999999999999988888776555554444433

>PRK10133 L-fucose transporter; Provisional

Probab=99.01  E-value=6.6e-09  Score=112.00  Aligned_cols=164  Identities=13%  Similarity=0.082  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYL-TDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      +...+..++.....++...+.+.|+ ++.+|+++.+.+.....+.++..++.+++|++.||+ |||+++..+.++.+++.
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence            3344444555566666677888886 567899999999999999999999999999999998 99999988877776665


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      ++..+..                        +. ..+.+..+.|++.+...|...+...+.+|++       .+.+.++.
T Consensus       340 ~~~~~~~------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l~  387 (438)
T PRK10133        340 LISAFAG------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFI  387 (438)
T ss_pred             HHHHHcC------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhHH
Confidence            5444321                        21 2245567789999999999999999998875       34444544


Q ss_pred             HHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHH
Q 007604          195 MFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAI  233 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~  233 (596)
                      .. ..+|+.++|.+.|++.+..| -+..|++.+++.+..+
T Consensus       388 ~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        388 VM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             hH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            43 34678888889999988887 7888887766544333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.00  E-value=6.1e-09  Score=114.40  Aligned_cols=169  Identities=13%  Similarity=0.084  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhh------------HHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHH
Q 007604           39 VVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSAN------------NVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIA  106 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~------------~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~  106 (596)
                      ....++..+.+|++..+.|.+++ +.|++..+.+.            ......++..++.+++++++||+ |||++++++
T Consensus       294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~  371 (502)
T TIGR00887       294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMG  371 (502)
T ss_pred             HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHH
Confidence            34445566778888888888885 67887553321            12333456667888999999998 999999888


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhh
Q 007604          107 FFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAH  186 (596)
Q Consensus       107 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  186 (596)
                      ..+..++..+.....+..                    .+...+....+...++..+..+..+.+.+|.+|++.      
T Consensus       372 ~~~~~~~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------  425 (502)
T TIGR00887       372 FFILTVLFFVLGFAYNHL--------------------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------  425 (502)
T ss_pred             HHHHHHHHHHHHHHHHhc--------------------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------
Confidence            877777665555432100                    011111111112222233345667788899999996      


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhcccc----------ccchhhhHHHHHHHHHHHHH
Q 007604          187 KLSFFNWWMFSIFFGTLLGNTVLVYIQDD----------VGWALGYGLPALGLAIAIAI  235 (596)
Q Consensus       187 r~~~~~~~~~~~~ig~~l~~~~~~~l~~~----------~g~~~~f~~~~~~~~~~~~~  235 (596)
                      |+++.++.+...++|++++|.+.+++.+.          .++...|++.++..+++.+.
T Consensus       426 R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       426 RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988763          34455666666555544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.99  E-value=1.8e-08  Score=107.45  Aligned_cols=158  Identities=12%  Similarity=0.076  Sum_probs=106.7

Q ss_pred             HHHHHHHhhhcCCChhhhhhHHHHHH-HHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 007604           54 SNLVMYLTDKLHHGTVKSANNVTNWG-GTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCN  132 (596)
Q Consensus        54 ~~l~~yl~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  132 (596)
                      .+.+.|+.+++|+++.+.+++..... .+..++.+++|++.||+ |||+.+.++..+..+..+........+        
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~--------  300 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP--------  300 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence            34455677789999999999886654 56889999999999998 999988877776655544332211100        


Q ss_pred             CCCCccccccccchhHHHHHHHH----HHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhh
Q 007604          133 DINSQDCRKASTLQLGTFFAALY----TLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTV  208 (596)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~----l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~  208 (596)
                                  .+.+.+++..+    ..+++.+...+....++.+.+|.++      +    ++++...++|..+++.+
T Consensus       301 ------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~~~~  358 (402)
T PRK11902        301 ------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYVGPT  358 (402)
T ss_pred             ------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHHHHH
Confidence                        13344444433    4455566666677777777766543      3    44444556777766668


Q ss_pred             hhhccccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 007604          209 LVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPF  242 (596)
Q Consensus       209 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  242 (596)
                      +|++.+..||+..|.+.+++.++++++.+..++.
T Consensus       359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        359 SGYLVEAYGWPGFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999888777766655444333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.99  E-value=1.9e-08  Score=109.70  Aligned_cols=159  Identities=8%  Similarity=-0.016  Sum_probs=111.7

Q ss_pred             HHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 007604           53 SSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCN  132 (596)
Q Consensus        53 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  132 (596)
                      ..+.|.+ .+++|.+.....+......+...++.+++|+++||+ |||+.++.+.++.+++.++++......        
T Consensus       291 ~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~--------  360 (479)
T PRK10077        291 LYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ--------  360 (479)
T ss_pred             HHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC--------
Confidence            3344444 457888887777777778888999999999999998 999999999999888887776542100        


Q ss_pred             CCCCccccccccchhHHHHHHHHHHHHhccC-cccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhh-
Q 007604          133 DINSQDCRKASTLQLGTFFAALYTLAVGTGG-TKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLV-  210 (596)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~-  210 (596)
                                 .... ....+.++.+.+.+. ..|...+++.|.+|+++      |+++.++.+...++|..+++.+.+ 
T Consensus       361 -----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~  422 (479)
T PRK10077        361 -----------APGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPM  422 (479)
T ss_pred             -----------cccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence                       0011 222233344444433 34778899999999876      999999999888888888755544 


Q ss_pred             -----hccccccchhhhHHHHHHHHHHHHHHHhc
Q 007604          211 -----YIQDDVGWALGYGLPALGLAIAIAIFLAG  239 (596)
Q Consensus       211 -----~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  239 (596)
                           ++.+..+|+..|++.++..+++.+..+..
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        423 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF  456 (479)
T ss_pred             HHhccchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence                 44467888888888776555554444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.98  E-value=2.8e-08  Score=105.62  Aligned_cols=166  Identities=6%  Similarity=-0.069  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +.++...+..++.....++...+++.++.+++|+++.+.+.+...+.++..++.++.|++.||. +|+..+....+....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~  294 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVS  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence            3345444444555555566666664444567899999999999999999999999999999995 655444433332333


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.++.....                        +.+.+.+..++.|++.+...+...+++.+..|++       +++..+
T Consensus       295 ~~~l~~~~~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  343 (394)
T PRK10213        295 ALVLTLWGS------------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGS  343 (394)
T ss_pred             HHHHHHHhh------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHH
Confidence            333322221                        4556667778889999999999998899888754       556666


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHH
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLA  230 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~  230 (596)
                      .+....++|..+|+.++|++.+..|++..++.+++..+
T Consensus       344 ~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~  381 (394)
T PRK10213        344 IQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML  381 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence            66777789999999999999998999888887765443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.97  E-value=5.1e-09  Score=114.28  Aligned_cols=156  Identities=14%  Similarity=0.149  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |.++...+..++..+.+++...++|.|+++.+|.++.+.++......++..++.+++|++.||+ |||+.+.++..+..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            3455556666777778888889999999999999999999999999999999999999999998 999999998888887


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +..+...... +                   +.+...+....++.|+|.+...+.......+.+|+++      |+++.+
T Consensus       334 ~~~~~~~~~~-~-------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~  387 (485)
T TIGR00711       334 GFYWRAFTFT-P-------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSS  387 (485)
T ss_pred             HHHHHhccCC-C-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHH
Confidence            7776652210 0                   1134455566778899998888777777888888775      999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccc
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDD  215 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~  215 (596)
                      +++...++|+.+|+.+.+.+.+.
T Consensus       388 ~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       388 LSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888877653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.97  E-value=1.3e-08  Score=111.17  Aligned_cols=165  Identities=14%  Similarity=0.184  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 007604           42 EVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSV  121 (596)
Q Consensus        42 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~  121 (596)
                      .++..+....+...+|.+.++.+|.++...|++.+++.+|..++.++.+++.+|+ ++++.+..+.++++++.+.++++.
T Consensus       227 ~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal~~  305 (524)
T PF05977_consen  227 SFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLALSP  305 (524)
T ss_pred             HHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhcch
Confidence            3333444444556788899999999999999999999999999999999999998 999999999888888888877764


Q ss_pred             hccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 007604          122 SLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFG  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  201 (596)
                                              +.+...+..++.|++.........+.+-+..|++.      ||+.+++++.....+
T Consensus       306 ------------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~g~  355 (524)
T PF05977_consen  306 ------------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFFGG  355 (524)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHHHH
Confidence                                    66677777888899888888888899999999987      999999999999999


Q ss_pred             HHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHH
Q 007604          202 TLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFL  237 (596)
Q Consensus       202 ~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  237 (596)
                      ..+|..+.|.+.+.+|.+.++.++++..+++.++..
T Consensus       356 ~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  356 MPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888887766555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.96  E-value=8e-09  Score=113.25  Aligned_cols=154  Identities=8%  Similarity=-0.075  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |.+....+..++..+.+++...++|.|+++.+|.++.+++.....+.++..++.++.|++.||+ |||+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3445555666667777788888999999999999999999999999999999999999999998 999999888888877


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.+++.....                     ..+.....+..++.|+|.|...+.......+..|+++      ++.+.+
T Consensus       338 ~~~~l~~~~~---------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~  390 (495)
T PRK14995        338 SFYGLAMTDF---------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGA  390 (495)
T ss_pred             HHHHHHHhcC---------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHH
Confidence            7766554321                     0133445567788899999998888888999999886      999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccc
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQD  214 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~  214 (596)
                      .++...++|..+|+.+.+.+.+
T Consensus       391 ~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        391 IETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988887754

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.95  E-value=3.4e-08  Score=104.03  Aligned_cols=161  Identities=7%  Similarity=0.083  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      .+...+...+....++....+.|.|+++++|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~  286 (385)
T TIGR00710       208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA  286 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            44444444455556666777788899889999999999999999999999999999999998 99999998887777776


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      +++.......                   ......+.+..++.|++.+...+.......|..|++       |+++.++.
T Consensus       287 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~  340 (385)
T TIGR00710       287 VLLEITAILG-------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHV-------AGTASALF  340 (385)
T ss_pred             HHHHHHHHhc-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc-------chHHHHHH
Confidence            6665442100                   013344555566788888888888888888888743       88999987


Q ss_pred             HHHHHH-HHHHhhhhhhhccccccchhhhH
Q 007604          195 MFSIFF-GTLLGNTVLVYIQDDVGWALGYG  223 (596)
Q Consensus       195 ~~~~~i-g~~l~~~~~~~l~~~~g~~~~f~  223 (596)
                      +..... |...++ +.+.+.+..+|...+.
T Consensus       341 ~~~~~~~g~i~~~-~~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       341 GTLRLVLGAIVGY-LVSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHH-HHHhccccChHHHHHH
Confidence            776655 555555 4555555445544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.95  E-value=4e-08  Score=98.88  Aligned_cols=164  Identities=17%  Similarity=0.175  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      ..|.+.+..-+.++.+|.++.|+|.++. +.|+|..++|.+++..++.+....+..-++++|...+|+......+.+.+|
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3677777777899999999999999887 679999999999999999999999999999998878888888888889998


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      ...+.+.+.                       +...+.  .+++|+|.|+..|.+..++.+..++.+     +-++..++
T Consensus       288 ~~G~~~~P~-----------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~LSgm  337 (395)
T COG2807         288 LVGLLLAPG-----------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA-----IAAALSGM  337 (395)
T ss_pred             HHHHHHhhh-----------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH-----HHHHHHHH
Confidence            887776531                       333333  478999999999999999999998875     36666677


Q ss_pred             HHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHH
Q 007604          194 WMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALG  228 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~  228 (596)
                      -+-...+=+++||.+.|++-|..| |+.+++.-+..
T Consensus       338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~  373 (395)
T COG2807         338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALA  373 (395)
T ss_pred             hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence            777777778889999999988765 88776654443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.91  E-value=1.5e-08  Score=104.04  Aligned_cols=174  Identities=13%  Similarity=0.086  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      .+...++..++.+=+.-.+......|-...+|++..+...+....++.++++++++|+|.||+ |-|+++.+++++..+.
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~  331 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA  331 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence            455555555655555556778888899999999999999999999999999999999999998 9999999999887776


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      .+...+..                        ....+++.-++.|+..|+.++..-++.++..|+++      -+++|++
T Consensus       332 ~~~~~~~~------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFgl  381 (438)
T COG2270         332 ALYLIFLE------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGL  381 (438)
T ss_pred             HHHHHHcc------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeeh
Confidence            66665442                        23345555678899999999999999999999997      8999999


Q ss_pred             HHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHHHh
Q 007604          194 WMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      +.......+.+||.+.+.+.+..| -|..+..-.++..++++.++.
T Consensus       382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence            999999999999999998877655 566665555555555555443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.90  E-value=2.9e-08  Score=105.72  Aligned_cols=152  Identities=12%  Similarity=0.050  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 007604           51 GISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPP  130 (596)
Q Consensus        51 ~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  130 (596)
                      ....++|.|+++..+ ++.+.+++.+...++...+....+++.||.++.++.+..+.++..++.+++....         
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------  295 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------  295 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence            345678888876555 7788888877777666655555566665543777777777777777776665543         


Q ss_pred             CCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 007604          131 CNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLV  210 (596)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~  210 (596)
                                     +...+.+..++.+++.+...|...++..|..|+++      |++.+++++...++|..+||.+.|
T Consensus       296 ---------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G  354 (400)
T PRK11646        296 ---------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGG  354 (400)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchH
Confidence                           44455556677888888888999999999999886      999999999999999999999999


Q ss_pred             hccccc---c-chhhhHHHHHHHHHHH
Q 007604          211 YIQDDV---G-WALGYGLPALGLAIAI  233 (596)
Q Consensus       211 ~l~~~~---g-~~~~f~~~~~~~~~~~  233 (596)
                      ++.+..   + ....+++..+..+++.
T Consensus       355 ~l~~~~~~~~~~~~~~~~~~~~~~~~~  381 (400)
T PRK11646        355 WLFDLGKALNQPELPWMMLGIIGLITL  381 (400)
T ss_pred             HHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            998753   2 3445544444433333

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.90  E-value=2.4e-08  Score=120.90  Aligned_cols=163  Identities=10%  Similarity=0.008  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChh-hhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTV-KSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      .++..++..++..+..+.+..+++.|+.+.+|++.. +.+++.+...++..++.+++|+++||+ ++++++.++.++.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~  311 (1146)
T PRK08633        233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLAL  311 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHH
Confidence            344444444555555566778899999999999999 999999999999999999999999998 999999888888777


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.+++....                        +...+++..++.|++.++..+...+++.+.+|++.      |+++++
T Consensus       312 ~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~  361 (1146)
T PRK08633        312 SLFLLPTAP------------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLA  361 (1146)
T ss_pred             HHHHHHHhh------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhH
Confidence            776666543                        55566677888899999988899999999999986      999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccc-cccchhhhHHHHH
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQD-DVGWALGYGLPAL  227 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~-~~g~~~~f~~~~~  227 (596)
                      +.++..++|.++++.+++.+.. .+++...|++.+.
T Consensus       362 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        362 ANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999888877665543 2345555554443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.90  E-value=2.7e-08  Score=107.05  Aligned_cols=163  Identities=15%  Similarity=0.143  Sum_probs=133.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |....++...++..++........+.|.+..+|.+ ...+.......++..++.++.++++||+ |||+++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            45666777777777777777778888888888877 5677778888999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChh-hhhhhhhhH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPK-EKAHKLSFF  191 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~  191 (596)
                      +.++..+...                      .+.+.+++..++.|++.+...+...++++|..+.++-+ .+++.|..+
T Consensus       303 ~~~~~~~~~~----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~  360 (428)
T PF13347_consen  303 GFLLLFFLGP----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYF  360 (428)
T ss_pred             HHHHHHHHHh----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHH
Confidence            9888777631                      26778888899999999999999999999999976422 123467888


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccccch
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVGWA  219 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g~~  219 (596)
                      +.+.+...+|..+++.+.+.+.+..|+.
T Consensus       361 s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  361 SVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            8999999999999999888775544443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.89  E-value=6.2e-08  Score=103.65  Aligned_cols=185  Identities=11%  Similarity=0.083  Sum_probs=125.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +..|.+.+..++...+|.+...++|.|+++.+.  ............+...+..+++|+++||+ |+||++.++.+...+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            356777777777766777777799999887663  33333334455778889999999999998 999999999887777


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCC----------C--
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEF----------E--  180 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~----------~--  180 (596)
                      +........  |.                ....+...+.+..+.+.++.|....+...++.+.+|++          .  
T Consensus       329 ~~~~~~l~l--p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~  390 (462)
T PRK15034        329 FSALLFLTL--PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDE  390 (462)
T ss_pred             HHHHHHHHh--cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchh
Confidence            664433321  10                00124556666666666777777778888888888741          0  


Q ss_pred             ---hhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHHHh
Q 007604          181 ---PKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       181 ---~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  238 (596)
                         ...+.+-+...|+......+|+.+-|.+.|...+..| +...|+...+..++++++.+.
T Consensus       391 ~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        391 QAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence               0011135667777788888888888878777765544 888888777766666555444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.89  E-value=2.5e-08  Score=99.88  Aligned_cols=169  Identities=8%  Similarity=-0.021  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------------CCChhhhhhHHHHHHHHHHHhhhhhHHHhh
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKL-------------------HHGTVKSANNVTNWGGTIWVTPIFGAGVAE   94 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-------------------g~~~~~~~~~~~~~~~~~~~~~~~~G~laD   94 (596)
                      ..+.+....|.+.+.+||++-......+...                   ..+....-.=+.+.++.-+.|.++.+++.|
T Consensus       327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ive  406 (528)
T KOG0253|consen  327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVE  406 (528)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHH
Confidence            4556777788889999998766554443211                   112222223345567888999999999999


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhc
Q 007604           95 AYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAAD  174 (596)
Q Consensus        95 ~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~  174 (596)
                      |+ |||+++..+++++.+..+++....+                   + +.....++.+|+.+..+    ..+++.|..|
T Consensus       407 rl-GRKkTMal~l~~f~iflfll~~c~~-------------------r-n~~tvllf~arafisg~----fqvaYvYtPE  461 (528)
T KOG0253|consen  407 RL-GRKKTMALSLILFGIFLFLLTTCKT-------------------R-NAYTVLLFTARAFISGA----FQVAYVYTPE  461 (528)
T ss_pred             Hh-cchhHHHHHHHHHHHHHHHHHHhcC-------------------c-chhHHHHHHHHHHHhch----heEEEEecCc
Confidence            97 9999999999999998877765531                   0 11223355666665443    4568899999


Q ss_pred             cCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHH
Q 007604          175 QFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAI  235 (596)
Q Consensus       175 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  235 (596)
                      .+|...      |+.+.|.-..+..+|+++.|.++ .... -.-..+..+...+.+++.++
T Consensus       462 VyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIa  514 (528)
T KOG0253|consen  462 VYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIA  514 (528)
T ss_pred             ccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHH
Confidence            999997      99999999999999999999887 3322 22223344444444444443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.88  E-value=2.4e-08  Score=120.74  Aligned_cols=183  Identities=11%  Similarity=-0.014  Sum_probs=131.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +.++...+..++..+.++++..++|.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|+. ++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            4466666666666777777888999999999999999999999999999999999999999987 777766666655555


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCcc-ccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQD-CRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      +.+.+.+... .......    .... .......+.+.++++.++.|++.+...+...+++.+.+|++.      ||+++
T Consensus       304 ~~~~l~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~  372 (1140)
T PRK06814        304 FGLDLAFASS-SVPAEPA----QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVI  372 (1140)
T ss_pred             HHHHHHhccc-ccccccc----cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeee
Confidence            4443333200 0000000    0000 000000144566777888999999999999999999999997      99999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccc-cccchhhhHHHHH
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQD-DVGWALGYGLPAL  227 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~-~~g~~~~f~~~~~  227 (596)
                      +..+...++|..+++++.+.+.+ ..++...+++.++
T Consensus       373 g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        373 AANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            99999999999999999888863 4456666554443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=3.1e-06  Score=89.66  Aligned_cols=100  Identities=10%  Similarity=0.002  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHH
Q 007604           75 VTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAAL  154 (596)
Q Consensus        75 ~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (596)
                      ..+.+....+..++++.+.|+. |.|..+.++...+..-.+.....                         |...++.+-
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-------------------------N~y~~yfss  109 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-------------------------NSYYLYFSS  109 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-------------------------chHHHHHHH
Confidence            6677788889999999999998 99999999988877665554432                         677889999


Q ss_pred             HHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhh
Q 007604          155 YTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGN  206 (596)
Q Consensus       155 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~  206 (596)
                      .+.|+|.+..+...-.+.++..+++.      +.+..++.-.....+..+|.
T Consensus       110 allG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Gg  155 (461)
T KOG3098|consen  110 ALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGG  155 (461)
T ss_pred             HHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999988875      67777665555555555554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.87  E-value=7.4e-08  Score=101.37  Aligned_cols=167  Identities=12%  Similarity=-0.029  Sum_probs=112.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchh---HHHHH-HHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRY---WTFVI-AFF  108 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk---~~~~~-~~~  108 (596)
                      |..|.+.+..++....+|++..|+|.|+++ .|++.. .+.......+...++   .++++||. .||   +.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            557888888899999999999999999964 677764 555544444444444   57888886 543   33222 333


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhh
Q 007604          109 FYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL  188 (596)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  188 (596)
                      +.+++....+...                        +.....+...+.+++.....+...++.+|.+|++.      |+
T Consensus       266 ~~a~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rg  315 (368)
T TIGR00903       266 LIAAFFLALAFEL------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HG  315 (368)
T ss_pred             HHHHHHHHHHHcc------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cC
Confidence            3333333333221                        22233344455666677777778899999999987      99


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHH
Q 007604          189 SFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFL  237 (596)
Q Consensus       189 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  237 (596)
                      ++.++.+...++|+..+|.+.+.+..  |....|.+.++..+++.+..+
T Consensus       316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988887763  566667666655555554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.86  E-value=6.9e-09  Score=107.68  Aligned_cols=143  Identities=15%  Similarity=0.223  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-hhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHG-TVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~-~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      |.+....++..+.++....+++.|+.+.+|.+ ..+.+.+.+...++..++.++.|+++||+ |+|+...+......++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~  287 (352)
T PF07690_consen  209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGA  287 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHH
Confidence            33444445555667778899999999999999 79999999999999999999999999998 98888877777666666


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      +.+......                     .+....+...++.|++.+...+...++..|.+|+++      |+++.++.
T Consensus       288 ~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~  340 (352)
T PF07690_consen  288 LGLLLLPFS---------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLF  340 (352)
T ss_dssp             HHHCCSHHH---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHH
T ss_pred             HHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHH
Confidence            555443210                     134556667778899999999999999999999886      99999999


Q ss_pred             HHHHHHHHHHhh
Q 007604          195 MFSIFFGTLLGN  206 (596)
Q Consensus       195 ~~~~~ig~~l~~  206 (596)
                      +...++|..+||
T Consensus       341 ~~~~~~~~~igP  352 (352)
T PF07690_consen  341 NSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC
Confidence            999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.85  E-value=9.5e-08  Score=101.55  Aligned_cols=158  Identities=12%  Similarity=-0.022  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 007604           46 RMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSG  125 (596)
Q Consensus        46 ~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~  125 (596)
                      ..........++.|+++.+|.++.+.|.+.+...++..++.++.+++.||+ ++|+++..+..+ .+..++.....    
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~~----  291 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQH----  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHHh----
Confidence            334444556677788889999999999999999999999999999999998 999888777533 33333333321    


Q ss_pred             CCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHh
Q 007604          126 LKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLG  205 (596)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~  205 (596)
                                          +.+...+..++.|++.+...+...+.+.+..|++.     +++++.+..+...++|..++
T Consensus       292 --------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~  346 (393)
T PRK11195        292 --------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLM  346 (393)
T ss_pred             --------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHH
Confidence                                44445566678899988888888888877655442     37999999999999999999


Q ss_pred             hhhhhhccccccchhhhHHHHHHHHHHHHH
Q 007604          206 NTVLVYIQDDVGWALGYGLPALGLAIAIAI  235 (596)
Q Consensus       206 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  235 (596)
                      ..+.+.+ +..|-+..+++.+...++....
T Consensus       347 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        347 LGLYSLL-VKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence            9888855 4577777777766554444433

>PRK09848 glucuronide transporter; Provisional

Probab=98.85  E-value=2.4e-08  Score=108.08  Aligned_cols=163  Identities=15%  Similarity=0.164  Sum_probs=122.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |.++...+..++....++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..+
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4455566666666666666667777788888888776666555555677888999999999998 999999999988888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhh-hhhhhhhH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKE-KAHKLSFF  191 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~  191 (596)
                      +.+++.+...                      .+.+.+++..++.++|.+...+...++.+|..|.++-+. ++++|..+
T Consensus       307 ~~~~~~~~~~----------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~  364 (448)
T PRK09848        307 GYLLFFWVSV----------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTY  364 (448)
T ss_pred             HHHHHHHcCc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHH
Confidence            8776654320                      145556667778899999999999999999988654211 12358888


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccccc
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVGW  218 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g~  218 (596)
                      +.+++...+|..+|+.+.+.+.+..||
T Consensus       365 ~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        365 SLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999888876544444

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.84  E-value=3.4e-08  Score=107.48  Aligned_cols=176  Identities=12%  Similarity=0.118  Sum_probs=147.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcc--hhHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLG--RYWTFVIAFFFY  110 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--rk~~~~~~~~~~  110 (596)
                      +.++.+.+...+..++++.-..+++.|.. ..|++..+++.++++..+..+++.++.|+++|+. .  ++.+..+++++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            45677777777888888888888888887 8999999999999999999999999999999998 6  444555566666


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++...+++..                        +...++..-++.|+..|.+....+..+.|..+.++      ...+
T Consensus       376 gl~~~~~p~~~------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a  425 (509)
T KOG2504|consen  376 GLARLFLPFAT------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNA  425 (509)
T ss_pred             HHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchH
Confidence            66666666653                        56677778888999999999988899999999986      9999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHHHhcC
Q 007604          191 FNWWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIFLAGT  240 (596)
Q Consensus       191 ~~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  240 (596)
                      +++......++..+||.++|++.+..| |...|+.+.+..+++....+..+
T Consensus       426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999999999999999999999998887 99999999888777775554444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.84  E-value=2.7e-08  Score=106.96  Aligned_cols=179  Identities=15%  Similarity=0.023  Sum_probs=122.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcc-------hhHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLG-------RYWTF  103 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-------rk~~~  103 (596)
                      ..+.+|.+.+..++...+++.+..++|.|+.+-+|++..+.|+..++..+...+..+++|.++||...       +||.+
T Consensus       256 ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkif  335 (466)
T KOG2532|consen  256 TSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIF  335 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHH
Confidence            33568999999999999999999999999999999999999999999999999999999999999833       12222


Q ss_pred             H-HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhc-cCcccchhhhhhccCCCCCh
Q 007604          104 V-IAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGT-GGTKPNILTIAADQFDEFEP  181 (596)
Q Consensus       104 ~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~-g~~~~~~~~~~~~~~~~~~~  181 (596)
                      - ++....+++.+.+++..         |             .+....++ .+.++++. |...+-...-..|..|.+  
T Consensus       336 n~i~~~~~ai~l~~l~~~~---------~-------------~~~~~a~~-~l~~~~~~~g~~~~Gf~~~~~~~apq~--  390 (466)
T KOG2532|consen  336 NTIAFGGPAVFLLVLAFTS---------D-------------EHRLLAVI-LLTIAIGLSGFNISGFYKNHQDIAPQH--  390 (466)
T ss_pred             HhHHHHHHHHHHHeeeecC---------C-------------CcchHHHH-HHHHHHHHcccchhhhHhhhhhccchH--
Confidence            1 22233333333333321         0             01111111 11111121 121222222233334443  


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccc---ccchhhhHHHHHHHHHHHHHHHhc
Q 007604          182 KEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDD---VGWALGYGLPALGLAIAIAIFLAG  239 (596)
Q Consensus       182 ~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~  239 (596)
                           -+..+++.+...++.+.++|.+.+.+...   ..|+.+|++.++..+++.+.+.+.
T Consensus       391 -----a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  391 -----AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence                 78889999999999999999999999843   369999999998877777655443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.82  E-value=5.5e-08  Score=101.72  Aligned_cols=145  Identities=8%  Similarity=-0.007  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHH-HHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWG-GTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      ..+.+.+..++..+.++....+++.|+++ +|+++.+.+.+.++.. ++..++.+++|+++||+ |||+.+.++.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            35556666666778888888999999987 9999999998887665 57789999999999998 999999988887777


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +..+.....+.....       |      .+..+...+....++.+++.+...+...++..|.+|++.      |++.++
T Consensus       288 ~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g  348 (356)
T TIGR00901       288 TNAGFVWLASNGHHD-------G------ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMA  348 (356)
T ss_pred             HHHHHHHHHhcCccc-------c------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHH
Confidence            665554431100000       0      000134556667778899999999999999999999997      999999


Q ss_pred             HHHHHHH
Q 007604          193 WWMFSIF  199 (596)
Q Consensus       193 ~~~~~~~  199 (596)
                      +++...+
T Consensus       349 ~~~~~~~  355 (356)
T TIGR00901       349 LLSSLSA  355 (356)
T ss_pred             HHHHHHh
Confidence            8776654

>TIGR00898 2A0119 cation transport protein

Probab=98.80  E-value=4.3e-08  Score=107.69  Aligned_cols=133  Identities=10%  Similarity=-0.041  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHH
Q 007604           75 VTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAAL  154 (596)
Q Consensus        75 ~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (596)
                      .....+...++.++++++.||+ |||+++.++.++..++.+++....+                      .......+..
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~  417 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV----------------------DLYFLRTALA  417 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC----------------------CchHHHHHHH
Confidence            3445667788899999999998 9999999998888887776665421                      0122333444


Q ss_pred             HHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHH
Q 007604          155 YTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIA  234 (596)
Q Consensus       155 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  234 (596)
                      ++.+++.+...+....+.+|.+|++.      |+++.++.+....+|++++|.+.+ +. ..++..++++.++..+++.+
T Consensus       418 ~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~  489 (505)
T TIGR00898       418 VLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGI  489 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHH
Confidence            55566666667888899999999986      999999999999999999998888 43 35566677766655555544


Q ss_pred             HHHh
Q 007604          235 IFLA  238 (596)
Q Consensus       235 ~~~~  238 (596)
                      ..++
T Consensus       490 ~~~~  493 (505)
T TIGR00898       490 LTLF  493 (505)
T ss_pred             HHHc
Confidence            4433

>PRK11043 putative transporter; Provisional

Probab=98.77  E-value=5.5e-07  Score=95.80  Aligned_cols=150  Identities=10%  Similarity=0.021  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhh
Q 007604           43 VFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVS  122 (596)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~  122 (596)
                      .+....++....+.|.|++ +.|+++.+.+.......++..++.++++++.||+ |||+.+....++..++.+.+.....
T Consensus       213 ~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~  290 (401)
T PRK11043        213 AACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASL  290 (401)
T ss_pred             HHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455566677888876 5799999999888888889999999999999998 9999877666655555443332211


Q ss_pred             ccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 007604          123 LSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGT  202 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  202 (596)
                      ..                   ..+...+.+...+.+++.+...|...+...|..|+ +      ++++.++++.....++
T Consensus       291 ~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~~~  344 (401)
T PRK11043        291 LS-------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQLGLC  344 (401)
T ss_pred             hc-------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHHHHH
Confidence            00                   01334445556677888888888888888888765 3      8999999988888888


Q ss_pred             HHhhhhhhhccccccchh
Q 007604          203 LLGNTVLVYIQDDVGWAL  220 (596)
Q Consensus       203 ~l~~~~~~~l~~~~g~~~  220 (596)
                      .+++.+.+.+.+......
T Consensus       345 ~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        345 FLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHccCCChhHH
Confidence            888888888876443333

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.76  E-value=6.8e-08  Score=103.07  Aligned_cols=193  Identities=11%  Similarity=0.048  Sum_probs=129.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH
Q 007604           30 GGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF  109 (596)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  109 (596)
                      ..++.....+...++..+.-.....+....+-++-|++..++.++.........+..+++.++.||. |||+.++++..+
T Consensus       266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~  344 (485)
T KOG0569|consen  266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSL  344 (485)
T ss_pred             chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence            3445566666666666665444445555566668899999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCc-ccchhhhhhccCCCCChhhhhhhh
Q 007604          110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGT-KPNILTIAADQFDEFEPKEKAHKL  188 (596)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~-~~~~~~~~~~~~~~~~~~~~~~r~  188 (596)
                      +.+..+++.....+...               ..++-....+++.++..++.+.. .|..+-+.+|.+|+..      |.
T Consensus       345 ~~~~~~~~~~~~~l~~~---------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~  403 (485)
T KOG0569|consen  345 MAVALLLMSIALFLSNS---------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RS  403 (485)
T ss_pred             HHHHHHHHHHHHHHHHH---------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hH
Confidence            88887777665422100               00001112234444433333333 6888999999999997      99


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceec
Q 007604          189 SFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRH  245 (596)
Q Consensus       189 ~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  245 (596)
                      .+.++......+...+-......+.+..|- ..|.+.++..++..+..+...|+.+.
T Consensus       404 aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  404 AAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence            999887777766666655566666666664 45555555544555555555555443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.73  E-value=3.3e-07  Score=97.20  Aligned_cols=70  Identities=13%  Similarity=0.049  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 007604           50 HGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALS  120 (596)
Q Consensus        50 ~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~  120 (596)
                      .....+.+.|+.+++|+++.+.+.+.....++..++.++.|++.||+ |||+.+.++.++..++.+++...
T Consensus       220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445667788888999999999999999999999999999999998 99999999988888887777665

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.73  E-value=7e-07  Score=93.97  Aligned_cols=148  Identities=9%  Similarity=0.011  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      .+..++..++.....+....+.+.++.+.+|+++.+.+.+.....++..++.+++|+++||+ |||+++.++..+..+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  274 (377)
T PRK11102        196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMG  274 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            44444444455555555666677788888999999999999999999999999999999998 99999998887654433


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      +........+                    .+...+.++..+.+.+.+...+.....+.|..|+ .      +++..+..
T Consensus       275 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~~~~  327 (377)
T PRK11102        275 IWLVVSALLD--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH-M------AGTASSLA  327 (377)
T ss_pred             HHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc-c------chHHHHHH
Confidence            3322221000                    1233333444444555555566666777787773 3      78887775


Q ss_pred             HHH-HHHHHHHhhhhhh
Q 007604          195 MFS-IFFGTLLGNTVLV  210 (596)
Q Consensus       195 ~~~-~~ig~~l~~~~~~  210 (596)
                      +.. ..+|..+++.+++
T Consensus       328 ~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        328 GTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            543 3467777775544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.72  E-value=7.5e-09  Score=107.10  Aligned_cols=149  Identities=15%  Similarity=0.168  Sum_probs=124.9

Q ss_pred             cccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCc
Q 007604          372 PPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQ  451 (596)
Q Consensus       372 ~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (596)
                      ..++++....+..+++.|+++.+.|++-||+           .+.+|..+++++++..++.                   
T Consensus        69 ~~Gll~~vf~v~~~i~sPl~gyLadryNR~~-----------v~~vG~~iW~~Av~~~~fs-------------------  118 (493)
T KOG1330|consen   69 ELGLLQTVFIVVFMIASPLFGYLADRYNRKR-----------VIAVGIFIWTLAVFASGFS-------------------  118 (493)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHhhcCcce-----------EEeeHHHHHHHHHHHHHHH-------------------
Confidence            3466777788888999999999888777774           3888999999998887774                   


Q ss_pred             ceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccC
Q 007604          452 VPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNN  531 (596)
Q Consensus       452 ~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~  531 (596)
                        .++|.+.+.=.+.|+||....|....++++.+|+..|++..++++++..+|..+|..+.+.+..++.           
T Consensus       119 --~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----------  185 (493)
T KOG1330|consen  119 --NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----------  185 (493)
T ss_pred             --HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----------
Confidence              2667777788999999999999999999999999999999999999999999999999888876442           


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 007604          532 LNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAE  567 (596)
Q Consensus       532 ~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~  567 (596)
                          ++.|.|+..++++++.+++..++.++.+++..
T Consensus       186 ----~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~  217 (493)
T KOG1330|consen  186 ----WWRWAFRGSAVLGVIVGLLVFLFVREPERGAR  217 (493)
T ss_pred             ----ceEEEEEeehHHHHHHHHHHHhhccCcccccc
Confidence                23677888999999988888888777665443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.72  E-value=1.5e-07  Score=102.70  Aligned_cols=165  Identities=15%  Similarity=0.035  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |.+..++...++.....+....+.+.|++..++ +....+.+.+...++..++.++.++++||+ |||++++++..+.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            556666666666666666555666555544444 556667777777788899999999999998 999999988887776


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCC-hhhhhhhhhhH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFE-PKEKAHKLSFF  191 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~  191 (596)
                      +.+........+                   +.+...+++..++.+++.+...+...++++|..|.++ +..+++.|..+
T Consensus       309 ~~~~~~~~~~~~-------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~  369 (473)
T PRK10429        309 SCGVLLLMGLAA-------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAY  369 (473)
T ss_pred             HHHHHHHHhccC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHH
Confidence            665544321000                   1145556666777889999999999999999988543 11222356678


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccccc
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVGW  218 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g~  218 (596)
                      +...+...+|..+|+.+.|++.+..||
T Consensus       370 s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        370 SVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            889999999999999998887655554

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.68  E-value=1.4e-06  Score=91.81  Aligned_cols=138  Identities=16%  Similarity=0.249  Sum_probs=97.5

Q ss_pred             ccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCccee
Q 007604          375 SLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL  454 (596)
Q Consensus       375 ~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (596)
                      .....+-.+-++.-++..+++.|+++.           +.+.+|+.+..+=++.++..+                     
T Consensus       410 v~~a~~~~gEI~~~ffs~klI~kiGHv-----------~v~~lgLa~~~~Rf~~~S~L~---------------------  457 (618)
T KOG3762|consen  410 VVSALCHAGEILFYFFSFKLIEKIGHV-----------NVMYLGLACNVGRFLYYSYLQ---------------------  457 (618)
T ss_pred             ehhhhhccchHHHHHHHHHHHHHhccc-----------ceeeehhhHHHHHHHHHHHhc---------------------
Confidence            334444555555555666655555544           446777777777777777653                     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHH-HHhHHHHHHhHHHhhhhccccccCCCCccccCCc
Q 007604          455 TIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMT-TLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLN  533 (596)
Q Consensus       455 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~  533 (596)
                      ++|..++.-++.|+..+..+.+.-+|+...+|+++|.+++|+... ..++|-.+|+.+.+.+....              
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f--------------  523 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF--------------  523 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee--------------
Confidence            677778888999999999999999999999999999999999874 66778888888877775422              


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhh
Q 007604          534 VCHLDYYYAFFAILNVLNFVFFLVVAK  560 (596)
Q Consensus       534 ~~~~~~~f~~~~~~~~v~~~~~~~~~~  560 (596)
                        +.-.+|+.+++.+++.++++..+-+
T Consensus       524 --g~~ttf~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  524 --GARTTFRIFGIACLVTLALFISIQL  548 (618)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence              1234577666666655555555433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.66  E-value=1.7e-07  Score=98.07  Aligned_cols=140  Identities=15%  Similarity=0.187  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      ..+.+.+..++.....+++..+++.|+++.+|.++.+.+...+...++..++.+++|+++||+ |||+.+..+......+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  304 (366)
T TIGR00886       226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG  304 (366)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence            345555555555566677888999999999999999999999999999999999999999998 9999888777766666


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      ..++.....                    .+.+...+.+...+.+++.|...+...++.++.+|.+       +++..++
T Consensus       305 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~g~~~g~  357 (366)
T TIGR00886       305 AFLVVLGLV--------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRA-------TGAVSGL  357 (366)
T ss_pred             HHHHHhcCC--------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchhh-------cccHHHH
Confidence            555544310                    0003334444555566666666777778888888743       8999998


Q ss_pred             HHHHHHHH
Q 007604          194 WMFSIFFG  201 (596)
Q Consensus       194 ~~~~~~ig  201 (596)
                      .+...++|
T Consensus       358 ~~~~~~~g  365 (366)
T TIGR00886       358 VGAIGNLG  365 (366)
T ss_pred             HHHhccCC
Confidence            87777665

>PRK09669 putative symporter YagG; Provisional

Probab=98.65  E-value=2.3e-07  Score=100.34  Aligned_cols=160  Identities=13%  Similarity=0.099  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      ++.++...++............+.|.+..++ ++...+.+.....+...++.+++++++||+ |||+.+.++.++..++.
T Consensus       231 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~  308 (444)
T PRK09669        231 WRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS  308 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            3444444444433333233333334443343 333444555666778888999999999998 99999998877665544


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhh-hhhhhhhHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKE-KAHKLSFFNW  193 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~  193 (596)
                      +...+..                      +.+...+++..++.|++.+...+...++++|..+.++.+. +++.+..++.
T Consensus       309 ~~~~~~~----------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~  366 (444)
T PRK09669        309 ALIFFIP----------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFST  366 (444)
T ss_pred             HHHHHhC----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHH
Confidence            3332221                      0155566777788999999999999999999998554221 1235667788


Q ss_pred             HHHHHHHHHHHhhhhhhhccccccc
Q 007604          194 WMFSIFFGTLLGNTVLVYIQDDVGW  218 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l~~~~g~  218 (596)
                      +.++..+|.++|+.++|++.+..||
T Consensus       367 ~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        367 NLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999888766665

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.64  E-value=3.6e-07  Score=95.70  Aligned_cols=178  Identities=11%  Similarity=0.071  Sum_probs=137.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLH---HGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFF  108 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  108 (596)
                      -|++|.+.+........++..-...+.|.+..++   .++...|.+.+...+.-.+.-.+..++.+|+ |.|+.++++.+
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence            3567766665555555555555567888875543   4556688888889999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhh
Q 007604          109 FYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL  188 (596)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  188 (596)
                      +.++=.+++++++                        +++.+.+...+.++-.+....++.-|+++.+|++-      .+
T Consensus       298 i~~iRi~~~~~~~------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sA  347 (412)
T PF01306_consen  298 IMAIRIIGSGFAT------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SA  347 (412)
T ss_dssp             HHHHHHHHHHT--------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HH
T ss_pred             HHHHHHHHHhhhc------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HH
Confidence            9888888887765                        78888999999999999999999999999999875      67


Q ss_pred             hhHHH-HHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHH-HHHHHhcC
Q 007604          189 SFFNW-WMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIA-IAIFLAGT  240 (596)
Q Consensus       189 ~~~~~-~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~-~~~~~~~~  240 (596)
                      +...+ ++.+..+|..+.+.++|++.|..|++..|++-+...+.. ++.++.++
T Consensus       348 t~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  348 TLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            77777 567888999999999999999999998887766554433 33344443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.63  E-value=1.3e-06  Score=92.57  Aligned_cols=161  Identities=8%  Similarity=0.001  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      .....++..++.....-....+.+.|+++.-|.+....+.+.+...++-.+.-.+.+++..|+ |-|++++++.+..++=
T Consensus       208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR  286 (400)
T PF03825_consen  208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVR  286 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            344444455555555555668889998855447778888877888888889999999999998 9999999999998887


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      ..+.+..++ +                  .+.......++..+.|+..|.+..+...++.+..|++.      |+++.++
T Consensus       287 ~~l~a~~~~-~------------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l  341 (400)
T PF03825_consen  287 WLLYAYFSD-P------------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGL  341 (400)
T ss_pred             HHHHHHhcC-C------------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHH
Confidence            777766521 0                  00011223344567899999999999999999999997      9999998


Q ss_pred             HHHH-HHHHHHHhhhhhhhccccccchh
Q 007604          194 WMFS-IFFGTLLGNTVLVYIQDDVGWAL  220 (596)
Q Consensus       194 ~~~~-~~ig~~l~~~~~~~l~~~~g~~~  220 (596)
                      +... ..+|..+|..++|++.+.+|-+.
T Consensus       342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~  369 (400)
T PF03825_consen  342 YSALSFGLGGAIGSLIGGWLYDAFGARG  369 (400)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence            7764 57999999999999998877443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.61  E-value=1.8e-06  Score=76.26  Aligned_cols=134  Identities=19%  Similarity=0.260  Sum_probs=97.4

Q ss_pred             ccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehh
Q 007604          377 TGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTI  456 (596)
Q Consensus       377 ~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (596)
                      .....++.++..++.+++.|+.+||           +.+..+..+..++.+.....                     .+.
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~~~   51 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALS---------------------SNI   51 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHh---------------------ccH
Confidence            3445667778888888887777766           33555666666665554432                     244


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccc
Q 007604          457 FIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCH  536 (596)
Q Consensus       457 ~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~  536 (596)
                      +.+....++.+++.+...+....+..|..|++.|++.+++.+....+|..+++.+.+.+.+.                .+
T Consensus        52 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~  115 (141)
T TIGR00880        52 TVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF----------------LG  115 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc----------------cc
Confidence            55666778899999999999999999999999999999999999999999999998887531                12


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 007604          537 LDYYYAFFAILNVLNFVFFLVV  558 (596)
Q Consensus       537 ~~~~f~~~~~~~~v~~~~~~~~  558 (596)
                      +.+.|++.++..++..+..+.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880       116 WRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhc
Confidence            3456666666666555554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.61  E-value=8.3e-07  Score=94.86  Aligned_cols=163  Identities=11%  Similarity=-0.046  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKL-HHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      .+..++..++......++.++++.|+.+.. +.+....+...+.+..+..++.+++|+++||+ ++|+++.++.++.++.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            343444445544444466688899986532 45555556667777788999999999999998 9999998888887777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHH
Q 007604          114 MIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNW  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  193 (596)
                      .++.....                        +.. ......+.|++.+...|...++..+..+++.       ..+.+.
T Consensus       313 ~ll~~~~~------------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~~  360 (410)
T TIGR00885       313 CLGSIFAG------------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAAG  360 (410)
T ss_pred             HHHHHHcC------------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHH
Confidence            77666542                        222 2455667778888888999999999998763       233333


Q ss_pred             HHHHHHHHHHHhhhhhhhccccc------cchhhhHHHHHHHHH
Q 007604          194 WMFSIFFGTLLGNTVLVYIQDDV------GWALGYGLPALGLAI  231 (596)
Q Consensus       194 ~~~~~~ig~~l~~~~~~~l~~~~------g~~~~f~~~~~~~~~  231 (596)
                      ..++ .+|+++.|.+.|++.|..      +.+..|+++.++.+.
T Consensus       361 l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       361 LVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            3333 399999999999999843      478888877765443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.58  E-value=2.4e-06  Score=91.41  Aligned_cols=139  Identities=14%  Similarity=0.132  Sum_probs=102.6

Q ss_pred             cccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceeh
Q 007604          376 LTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT  455 (596)
Q Consensus       376 ~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (596)
                      ..+...++..++.++.+.+.||++||           +.+..+.++.+++.+.....                     .+
T Consensus        56 ~~s~~~~~~~~~~~~~G~l~dr~Grr-----------~~l~~~~~~~~~~~~~~~~a---------------------~~  103 (413)
T PRK15403         56 SVSLYLAGGMALQWLLGPLSDRIGRR-----------PVLITGALIFTLACAATLFT---------------------TS  103 (413)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHc---------------------CC
Confidence            34455667777888888888888887           34666777777666655543                     35


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCccc
Q 007604          456 IFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVC  535 (596)
Q Consensus       456 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~  535 (596)
                      ++.+++.-++.|++++...+..+.++.|..|++.+++.+++.+....++..+|+.+.+.+.+.                .
T Consensus       104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~----------------~  167 (413)
T PRK15403        104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF----------------V  167 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------c
Confidence            667777778899998877777788888999999999999999999999999999988776531                1


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhcc
Q 007604          536 HLDYYYAFFAILNVLNFVFFLVVAKFY  562 (596)
Q Consensus       536 ~~~~~f~~~~~~~~v~~~~~~~~~~~~  562 (596)
                      ++.+.|++.+++.++..++.++..++.
T Consensus       168 gw~~~f~~~~~~~~i~~~~~~~~lp~~  194 (413)
T PRK15403        168 HWKVLFAIIAVMGLIAFVGLLLAMPET  194 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            346678877777776655544444443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.55  E-value=4.6e-06  Score=88.48  Aligned_cols=139  Identities=9%  Similarity=-0.006  Sum_probs=98.8

Q ss_pred             HHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 007604           53 SSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCN  132 (596)
Q Consensus        53 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  132 (596)
                      ....+.|+++.+|.++.+.++.......+..++.++.+++.||+ ||+...  +.....++.+.........        
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~--------  295 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG--------  295 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc--------
Confidence            34566788888999999999988888888888999999999998 743332  2222222222221111000        


Q ss_pred             CCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhc
Q 007604          133 DINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYI  212 (596)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l  212 (596)
                                 ..+...+.++.++.++|.+...|...++..|.+|++       ++...++.+...++|+.+++.+++++
T Consensus       296 -----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        296 -----------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYL-------AGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             -----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                       013455667778889999999999999999988743       78889999988999999999999888


Q ss_pred             cccccchh
Q 007604          213 QDDVGWAL  220 (596)
Q Consensus       213 ~~~~g~~~  220 (596)
                      .....+..
T Consensus       358 ~~~~~~~~  365 (394)
T PRK11652        358 PQTGQFSL  365 (394)
T ss_pred             cCCchHHH
Confidence            76544443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.49  E-value=2.8e-06  Score=81.78  Aligned_cols=97  Identities=14%  Similarity=0.111  Sum_probs=73.6

Q ss_pred             HHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 007604           57 VMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINS  136 (596)
Q Consensus        57 ~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  136 (596)
                      ..|+....|+...++|.+..+.....++...+.|-++|+- |||+.-+.    +++..+++-+..+.|            
T Consensus        60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvt----ycitYiLsCiTKhSp------------  122 (454)
T KOG4332|consen   60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVT----YCITYILSCITKHSP------------  122 (454)
T ss_pred             eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceee----ehHHHHHHHHhhcCC------------
Confidence            3466778899999999998888888899999999999998 99997554    344445554444322            


Q ss_pred             ccccccccchhHHHHHHHHHHHHhccCcccchhh-hhhccCCCC
Q 007604          137 QDCRKASTLQLGTFFAALYTLAVGTGGTKPNILT-IAADQFDEF  179 (596)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~  179 (596)
                               +.-.++++|.+-|++.+....+..+ +++|+..++
T Consensus       123 ---------qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr  157 (454)
T KOG4332|consen  123 ---------QYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKR  157 (454)
T ss_pred             ---------ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence                     6667899999999999988877765 456665433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.49  E-value=8.9e-06  Score=79.87  Aligned_cols=159  Identities=12%  Similarity=0.031  Sum_probs=111.6

Q ss_pred             HHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 007604           54 SNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCND  133 (596)
Q Consensus        54 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  133 (596)
                      +.....+++.+|+|+.|...+..+-.++..++ ++.|.+.|++ |.+.++.++.+...+|..++.++..-.         
T Consensus        22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~---------   90 (250)
T PF06813_consen   22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR---------   90 (250)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc---------
Confidence            44555688999999999999999999999875 8889999998 999999999999999998888764211         


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 007604          134 INSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQ  213 (596)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~  213 (596)
                             .+ ..+.+.+.+..++.+.+.+.+..++.....+.||++       ||.+.++.-....+++++-..+...+.
T Consensus        91 -------i~-~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~-------RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen   91 -------IP-SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS-------RGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             -------cC-ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc-------cCceehhhhHHHHhHHHHHHHHHHHHc
Confidence                   11 124556666666777776666677777778999864       999999977777776665544444443


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHh
Q 007604          214 DDVGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       214 ~~~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      ....-...+.++....+++++....
T Consensus       156 ~~~~~~fll~la~~~~~v~l~~~~~  180 (250)
T PF06813_consen  156 GDDPSSFLLFLAVLPAVVCLVAMFF  180 (250)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHhhh
Confidence            3322333333444444444444333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.44  E-value=2.4e-06  Score=90.59  Aligned_cols=159  Identities=19%  Similarity=0.222  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMI  115 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  115 (596)
                      ..+++..++...++....+....|.+-.+|.++.+..........+..++.++...+++|+ |||+++.++.++.+++.+
T Consensus       239 ~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~~  317 (467)
T COG2211         239 LLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGYL  317 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHHH
Confidence            3344445555555444556667777878898988888888888888888899999999998 999999999999999998


Q ss_pred             HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhh-hhhhhhHHHH
Q 007604          116 VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEK-AHKLSFFNWW  194 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~  194 (596)
                      +..+..                      ..+...+++..++.++|.+...+..+++++|..+-.|-+.. ++-|..++.+
T Consensus       318 ~~~f~~----------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~  375 (467)
T COG2211         318 LLYFTP----------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM  375 (467)
T ss_pred             HHHhhc----------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence            888764                      12677888888999999999999999999999986653222 3345666777


Q ss_pred             HHHHHHHHHHhhhhhhhcccccc
Q 007604          195 MFSIFFGTLLGNTVLVYIQDDVG  217 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~l~~~~g  217 (596)
                      .+..-+|.+++..+.|++....|
T Consensus       376 tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         376 TFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888888888777666544333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=2.2e-06  Score=87.26  Aligned_cols=147  Identities=15%  Similarity=0.193  Sum_probs=123.5

Q ss_pred             cccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCc
Q 007604          372 PPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQ  451 (596)
Q Consensus       372 ~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (596)
                      ..++.....++..++..|+.+.++|+++.|.           .+.+|++++.++.+++++.+                  
T Consensus       107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~i-----------pm~~Gl~vmf~sTilFafg~------------------  157 (464)
T KOG3764|consen  107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKI-----------PMVAGLFVMFLSTILFAFGN------------------  157 (464)
T ss_pred             chhHHHHHHHHHHHHhcccchhhHHHhcccc-----------HHHHHHHHHHHHHHHHHHcc------------------
Confidence            4566777789999999999999999888884           38999999999999988853                  


Q ss_pred             ceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchh-HHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCcccc
Q 007604          452 VPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESM-KSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILN  530 (596)
Q Consensus       452 ~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~-rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~  530 (596)
                         +++.+++.=.+.|+|...+.+.+.+++++.+|++. ||+++|+.....++|..+||.+.+.+++..           
T Consensus       158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-----------  223 (464)
T KOG3764|consen  158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-----------  223 (464)
T ss_pred             ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-----------
Confidence               55577778899999999999999999999999776 699999999999999999999999998643           


Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007604          531 NLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKA  566 (596)
Q Consensus       531 ~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~  566 (596)
                           +.+..|.+.+++.++-..+-+++.+.++..+
T Consensus       224 -----Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  224 -----GKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             -----CCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence                 3456799999988888777777665544433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.34  E-value=1.3e-05  Score=82.89  Aligned_cols=165  Identities=16%  Similarity=0.195  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 007604           45 ERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLS  124 (596)
Q Consensus        45 ~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~  124 (596)
                      ..++++.--..+-+|--+-||++..|+..+......+..++-...|++..|..+++++..++..+.+++..+..++... 
T Consensus       220 ~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~-  298 (403)
T PF03209_consen  220 GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL-  298 (403)
T ss_pred             HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3444444446677788888999999999999999999999999999998866699999989998888888777776532 


Q ss_pred             CCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 007604          125 GLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLL  204 (596)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l  204 (596)
                                          .+.+.+..+.+++|+|.|.+.....+...|...++.      -|.+.+.+.....+...+
T Consensus       299 --------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Gl  352 (403)
T PF03209_consen  299 --------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGL  352 (403)
T ss_pred             --------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHH
Confidence                                267788999999999999999999999999998875      889999998888888888


Q ss_pred             hhhhhhhccc----------cccchhhhHHHHHHHHHHHHHH
Q 007604          205 GNTVLVYIQD----------DVGWALGYGLPALGLAIAIAIF  236 (596)
Q Consensus       205 ~~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~  236 (596)
                      |..++|.+.|          ..+|..+|.+-++..++++.+.
T Consensus       353 g~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  353 GTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            8777775532          2357777877777666665543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.31  E-value=7.9e-06  Score=89.07  Aligned_cols=184  Identities=11%  Similarity=0.047  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhh----hhhHHHHHHHHHHHhhhhhHH----HhhhhcchhHHH--H
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVK----SANNVTNWGGTIWVTPIFGAG----VAEAYLGRYWTF--V  104 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~----~~~~~~~~~~~~~~~~~~~G~----laD~~~Grk~~~--~  104 (596)
                      +..+++...+....+.-..+.++.|.++..+.+...    .+++.+.-.+...+.+++..+    +.||..+.+...  .
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            344444444555555556676788877665544222    556666666666666666444    444421333333  6


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhh
Q 007604          105 IAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEK  184 (596)
Q Consensus       105 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  184 (596)
                      +|+++..++.+.+++.....               +.....+.+.+.+..++.++|.....|...+++.+..|++.    
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~---------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~----  414 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFA---------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL----  414 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhc---------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence            77888877777766542110               00112377788889999999999999999999999999986    


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhc
Q 007604          185 AHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAG  239 (596)
Q Consensus       185 ~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  239 (596)
                        |++.++.+.....+|..+++.+.....+..+|...|...++..++..++++..
T Consensus       415 --~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       415 --MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence              99999999999999999998888776666678777766665544444444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.30  E-value=0.00019  Score=75.08  Aligned_cols=156  Identities=10%  Similarity=0.066  Sum_probs=110.5

Q ss_pred             HHHHHHHHhhh-cCCChhhhhhH-HHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 007604           53 SSNLVMYLTDK-LHHGTVKSANN-VTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPP  130 (596)
Q Consensus        53 ~~~l~~yl~~~-lg~~~~~~~~~-~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  130 (596)
                      -+++..|+.+. .|++..|...- .=...-......++...++|.. |.|++++++.+...+...++....         
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~---------   92 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT---------   92 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC---------
Confidence            36678888876 89999887743 3344556667778888999987 999999999988888777777664         


Q ss_pred             CCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 007604          131 CNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLV  210 (596)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~  210 (596)
                                     +...+-+.-+.-|++.+. ..+..+++-...|+++      ..++.+....+.-+|..++.+++-
T Consensus        93 ---------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQ  150 (412)
T PF01770_consen   93 ---------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQ  150 (412)
T ss_pred             ---------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           666677777788887765 5667788888887764      666666666666666666664444


Q ss_pred             hccc--cccchhhhHHHHHHHHHHHHHHHhcC
Q 007604          211 YIQD--DVGWALGYGLPALGLAIAIAIFLAGT  240 (596)
Q Consensus       211 ~l~~--~~g~~~~f~~~~~~~~~~~~~~~~~~  240 (596)
                      .+..  ..+++...++......+++++.++++
T Consensus       151 llvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  151 LLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3332  34577777777776666666655544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11462 putative transporter; Provisional

Probab=98.27  E-value=1.6e-05  Score=86.37  Aligned_cols=153  Identities=12%  Similarity=0.072  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 007604           42 EVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSV  121 (596)
Q Consensus        42 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~  121 (596)
                      .++..............|.+..+|. +...+.+.+.+.++..++.+++++++||+ |||+++..+..+..+..++..+..
T Consensus       237 ~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~  314 (460)
T PRK11462        237 TIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFVP  314 (460)
T ss_pred             HHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333333333333344444434443 34455677788889999999999999998 999988765554444333332221


Q ss_pred             hccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhh-hhhhHHHHHHHHHH
Q 007604          122 SLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAH-KLSFFNWWMFSIFF  200 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~i  200 (596)
                      .                      .+...+++..++.|++.+...+...++.+|..+.++-+...| -+..++...+...+
T Consensus       315 ~----------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Kl  372 (460)
T PRK11462        315 M----------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKL  372 (460)
T ss_pred             h----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHH
Confidence            0                      123233444556777777777777888999888543222122 34446677788888


Q ss_pred             HHHHhhhhhhhccccccc
Q 007604          201 GTLLGNTVLVYIQDDVGW  218 (596)
Q Consensus       201 g~~l~~~~~~~l~~~~g~  218 (596)
                      |..+|+.++|++.+..||
T Consensus       373 g~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        373 GLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            998888887776544344

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.26  E-value=2.2e-05  Score=78.40  Aligned_cols=145  Identities=19%  Similarity=0.295  Sum_probs=109.2

Q ss_pred             HHHHHHHhhhcCCCh--hhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 007604           54 SNLVMYLTDKLHHGT--VKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPC  131 (596)
Q Consensus        54 ~~l~~yl~~~lg~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  131 (596)
                      ...+.+.. .++.+.  ...++..+.+.+...++.++.|.++||+ |||+.+..+.....++.+++.+..+         
T Consensus        23 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------   91 (338)
T COG0477          23 PALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------   91 (338)
T ss_pred             HHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence            34444443 445444  5788999999999999999999999999 9998888887765566555555421         


Q ss_pred             CCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCC-CChhhhhhhhhhHHHHHH-HHHHHHHHhhhhh
Q 007604          132 NDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDE-FEPKEKAHKLSFFNWWMF-SIFFGTLLGNTVL  209 (596)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~l~~~~~  209 (596)
                                   .....+.+.|++.|++.+...+...+++.|.+|+ +      +|+...+.... ...+|..++|.++
T Consensus        92 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  152 (338)
T COG0477          92 -------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEAT------ERGLAVGLVTLGAGALGLALGPLLA  152 (338)
T ss_pred             -------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchh------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         1577788889999999999999999999999997 3      38888888777 5778888888776


Q ss_pred             hhcccc--ccchhhhHHHHHH
Q 007604          210 VYIQDD--VGWALGYGLPALG  228 (596)
Q Consensus       210 ~~l~~~--~g~~~~f~~~~~~  228 (596)
                      +.+...  .+|+..|.+....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         153 GLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHhcchHHHHHHHHHH
Confidence            665543  5788866555543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.26  E-value=1.3e-05  Score=83.12  Aligned_cols=167  Identities=14%  Similarity=0.109  Sum_probs=125.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhh---cchhHHHHHHH-H
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAY---LGRYWTFVIAF-F  108 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grk~~~~~~~-~  108 (596)
                      +.++.+....+...+++-.=.++++.|++ ++|.+-...+.+-.+.-+...+.+|+.|..+||+   +||||-++... .
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            56667777777778887777788999987 8999999999999999999999999999999987   68888776554 4


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhh
Q 007604          109 FYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL  188 (596)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  188 (596)
                      ..+++..+...+.++....       |.+--+...+.....++++..+.-++....+..+-++.+|....++     ++.
T Consensus       111 ~i~~~l~Lig~aaDig~~l-------gd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~-----~~~  178 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLL-------GDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA-----KKT  178 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHh-------cCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh-----hhh
Confidence            5667777776665432111       1111111222456677788888888988899999999999998775     122


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhc
Q 007604          189 SFFNWWMFSIFFGTLLGNTVLVYI  212 (596)
Q Consensus       189 ~~~~~~~~~~~ig~~l~~~~~~~l  212 (596)
                      ++.+++...+.+|+.+|...+++.
T Consensus       179 ~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  179 RANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             ccchhHHHHHHhcceeeeeccccc
Confidence            289999999999999998777754

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.25  E-value=1.9e-05  Score=81.02  Aligned_cols=154  Identities=17%  Similarity=0.113  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMI  115 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  115 (596)
                      ....+..|+---.--.+-++++.|+.+..|++..+++..++.+..+.++|...+-++-.|+ ...|.+.+..++..+-.+
T Consensus       239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~  317 (422)
T COG0738         239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLL  317 (422)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence            3333333433233334558899999988999999999999999999999999999999998 777777766655444444


Q ss_pred             HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 007604          116 VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWM  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  195 (596)
                      ..++..                        +. .-+.+.++.|+..+...|++.++..+..|++.     +.++.   .-
T Consensus       318 ~~~l~~------------------------g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s~---~l  364 (422)
T COG0738         318 AVALIG------------------------GV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGSG---LL  364 (422)
T ss_pred             HHHHhc------------------------Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-----cccce---ee
Confidence            444442                        32 23345678899999999999999999999543     23332   23


Q ss_pred             HHHHHHHHHhhhhhhhccccccchhhhH
Q 007604          196 FSIFFGTLLGNTVLVYIQDDVGWALGYG  223 (596)
Q Consensus       196 ~~~~ig~~l~~~~~~~l~~~~g~~~~f~  223 (596)
                      .+.-+|+++-|.+.|++.|..|-...+.
T Consensus       365 ~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         365 VMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             eeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            3456899999999999999988776665

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.13  E-value=5.6e-06  Score=89.53  Aligned_cols=165  Identities=14%  Similarity=0.106  Sum_probs=114.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhh---cchhHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAY---LGRYWTFVIAFFF  109 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grk~~~~~~~~~  109 (596)
                      +..|...+..++.....|++..++|.|+++..|++..+++.+...+.++..++.+++|+++||.   ..+|..+...+.+
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~  352 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL  352 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4588899999999999999999999999986789999999999999999999999999999993   2777777766655


Q ss_pred             HH-HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhh
Q 007604          110 YL-MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKL  188 (596)
Q Consensus       110 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  188 (596)
                      +. +|.+.+....                        .......+.+....+.+...+++..-..+....+.     ||-
T Consensus       353 ~~~~g~~~l~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~  403 (495)
T KOG2533|consen  353 YAIIGAISLLAAA------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KAL  403 (495)
T ss_pred             HHHHHHHHHHhhc------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhH
Confidence            44 3433333321                        23333333334444455555666666677766554     466


Q ss_pred             hhHHHHHHHHHHHHHHh-hhhhhhccccccchhhhHHHH
Q 007604          189 SFFNWWMFSIFFGTLLG-NTVLVYIQDDVGWALGYGLPA  226 (596)
Q Consensus       189 ~~~~~~~~~~~ig~~l~-~~~~~~l~~~~g~~~~f~~~~  226 (596)
                      +..+.+..+.+.+++++ ++..+.....++|...|+...
T Consensus       404 ~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  404 TTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             HHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence            66666655555554444 444455555678888884433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.10  E-value=0.0019  Score=67.68  Aligned_cols=61  Identities=13%  Similarity=0.157  Sum_probs=52.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhh
Q 007604          455 TIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTV  515 (596)
Q Consensus       455 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i  515 (596)
                      ++|.+++..+.-|+..+..++..+..+.+..|++.|..++|.......+|..++..+.-.+
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            5666666778889999999999999999999999999999999999999998888876444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.09  E-value=4e-05  Score=83.11  Aligned_cols=139  Identities=12%  Similarity=0.100  Sum_probs=92.9

Q ss_pred             cccchhHHHHHHHHHHhHHHHHh-hhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCccee
Q 007604          376 LTGFVTLSMLVCVVLYDRCFVRI-TRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL  454 (596)
Q Consensus       376 ~~~~~~~~~~i~~~l~~~~~~~l-~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (596)
                      +.........+..++.+++.||+ +||           +.+.+|.++.+++.+..+...                    .
T Consensus        50 i~~~~~~~~~l~~ligG~LaDRilGrr-----------r~iliG~il~~lg~lll~~~~--------------------~   98 (493)
T PRK15462         50 LFSAYCSLVYVTPILGGFLADKVLGNR-----------MAVMLGALLMAIGHVVLGASE--------------------I   98 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHHHHHHHHhh--------------------c
Confidence            34444556666777888888887 766           447778888777765544321                    1


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccch--hHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCC
Q 007604          455 TIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPES--MKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNL  532 (596)
Q Consensus       455 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~  532 (596)
                      +...+.....+..+|.+...+...+++.|.+|++  .|.++.+++.....+|+.+++.+.+.+.+.              
T Consensus        99 ~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~--------------  164 (493)
T PRK15462         99 HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE--------------  164 (493)
T ss_pred             chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh--------------
Confidence            1122333444555667777777788999999976  799999999999999999999999988541              


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007604          533 NVCHLDYYYAFFAILNVLNFVFFLVVAKF  561 (596)
Q Consensus       533 ~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  561 (596)
                        .++++.|.+.++..+++++.++...++
T Consensus       165 --~Gw~~~F~iaaigm~l~li~~~~~~~~  191 (493)
T PRK15462        165 --YSWAMGFGLAAVGMIAGLVIFLCGNRH  191 (493)
T ss_pred             --hChHHHHHHHHHHHHHHHHHHHHhhhh
Confidence              134566776655555555555444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.08  E-value=0.00013  Score=78.72  Aligned_cols=207  Identities=9%  Similarity=-0.034  Sum_probs=138.4

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCChh------h----hhhHHHHHHHHHHHhhhhhHHHhhh
Q 007604           27 SKRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDK-LHHGTV------K----SANNVTNWGGTIWVTPIFGAGVAEA   95 (596)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~~~~------~----~~~~~~~~~~~~~~~~~~~G~laD~   95 (596)
                      ..+..++.++.++.++++..++++....+.+.|+.++ ++-++.      +    ..+....+.+...+..++--++.++
T Consensus       252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~  331 (477)
T TIGR01301       252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG  331 (477)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466778899999999999999999999988888753 443221      1    1233444555555666777788988


Q ss_pred             hcch-hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC-ccccccccchhHHHHHHHHHHHHhccCcccchhhhhh
Q 007604           96 YLGR-YWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINS-QDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAA  173 (596)
Q Consensus        96 ~~Gr-k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  173 (596)
                      + |+ |++..++.++.+++.+...+..+.....    .+.++ +.--.+........++...+.|+..+.....-.++++
T Consensus       332 ~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s  406 (477)
T TIGR01301       332 W-GAGKRLWGIVNIILAICLAATVLVTYVAKNS----RYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALAS  406 (477)
T ss_pred             h-ccchhHHHHHHHHHHHHHHHHHHHHhhhhcc----ccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence            7 95 6776888888888887776543211000    00000 0000000011355666677789999998899999999


Q ss_pred             ccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccc--chhhhHHHHHHHHHHHHHHHhcCCc
Q 007604          174 DQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVG--WALGYGLPALGLAIAIAIFLAGTPF  242 (596)
Q Consensus       174 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~  242 (596)
                      +..+++.    .+.|..+|+++.++.+...+..+..|.+.+..|  -.+++.++++..+++.+..+...|+
T Consensus       407 ~~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       407 IRSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HHccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999543    137999999999999999998877776544443  4567777887777777666655554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.04  E-value=4.4e-05  Score=83.46  Aligned_cols=109  Identities=8%  Similarity=0.126  Sum_probs=83.4

Q ss_pred             cchhHHHHHHHHHHhHHHHH-hhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehh
Q 007604          378 GFVTLSMLVCVVLYDRCFVR-ITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTI  456 (596)
Q Consensus       378 ~~~~~~~~i~~~l~~~~~~~-l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (596)
                      ........+..++.+++.|+ ++||           +.+.+|.++.+++.+..++..                    ...
T Consensus        57 ~~~~~~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~--------------------~~~  105 (489)
T PRK10207         57 GAFAALVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL--------------------LKP  105 (489)
T ss_pred             HHHHHHHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc--------------------cch
Confidence            33444555666788888887 7777           558888888888877766532                    111


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHhhccchh--HHHHHHHHHHHHhHHHHHHhHHHhhhhc
Q 007604          457 FIMLPQFVLMGTADAFLEVAKIEFFYDQAPESM--KSLGTSYSMTTLGVGNFLSSFLLSTVSD  517 (596)
Q Consensus       457 ~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~--rg~~~g~~~~~~~ig~~lg~~~~~~i~~  517 (596)
                      ..+....+++++|.++..|...+++.|++|++.  |+.+.+++.+...+|..+|+.+.+.+.+
T Consensus       106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~  168 (489)
T PRK10207        106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD  168 (489)
T ss_pred             hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            223356678899999999999999999998774  5778999999999999999999998864

>TIGR00788 fbt folate/biopterin transporter

Probab=98.01  E-value=1.4e-05  Score=87.01  Aligned_cols=135  Identities=12%  Similarity=-0.029  Sum_probs=106.5

Q ss_pred             hhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcccc
Q 007604           61 TDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCR  140 (596)
Q Consensus        61 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (596)
                      .+.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++.+.......               .++
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~---------------~~~  343 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVK---------------RWN  343 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeee---------------ccc
Confidence            357899999999999999999999999999999998 9999999999888887755432110               000


Q ss_pred             ccc-cchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccc
Q 007604          141 KAS-TLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVG  217 (596)
Q Consensus       141 ~~~-~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g  217 (596)
                      ... ..+...+....++.+++.+........++.+..|++.      +++.++++....++|..+++.+++++.+..|
T Consensus       344 ~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       344 LAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             cccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            000 0022234445667788888888888999999999997      9999999999999999999999998887766

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.00  E-value=2.2e-05  Score=83.02  Aligned_cols=173  Identities=9%  Similarity=-0.028  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 007604           38 VVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVL  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~  117 (596)
                      .++..++..++.--+.+++--+++ +++-.+.-.|.+...-..+-++.-++.+++..++ |+-+++..++.++.+=.+..
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~  453 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYY  453 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHH
Confidence            344445555555445555544444 6676777777666666778888899999999998 99999999999988888777


Q ss_pred             HHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHH-
Q 007604          118 ALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMF-  196 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-  196 (596)
                      +...                        |.|+....-+++|+..+..+.++.+|+.+..|++-      |.++-++.+. 
T Consensus       454 S~L~------------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~  503 (618)
T KOG3762|consen  454 SYLQ------------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGI  503 (618)
T ss_pred             HHhc------------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHH
Confidence            7664                        78888888999999999999999999999999996      8888887554 


Q ss_pred             HHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 007604          197 SIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPF  242 (596)
Q Consensus       197 ~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  242 (596)
                      .-.+|-.+|.+++|.+...+|-|..|++.++..++.++.+....+.
T Consensus       504 f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~  549 (618)
T KOG3762|consen  504 FHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLL  549 (618)
T ss_pred             hcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4478888999999999999999999998887776666655544433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.99  E-value=0.0061  Score=65.69  Aligned_cols=166  Identities=8%  Similarity=-0.021  Sum_probs=99.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----hhhhhhHHHHHHHHHHHh-hhhhHHHhhhhcchhHHH
Q 007604           30 GGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHG-----TVKSANNVTNWGGTIWVT-PIFGAGVAEAYLGRYWTF  103 (596)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~-----~~~~~~~~~~~~~~~~~~-~~~~G~laD~~~Grk~~~  103 (596)
                      ..+++++...+..||..+.|+     ..--++|.+..+     .....++-+...+...+. .++-+++++|+ +|++.+
T Consensus         4 ~E~~k~~~~~l~fF~il~~Y~-----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf   77 (472)
T TIGR00769         4 HELKKFLPLFLMFFCILFNYT-----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALF   77 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH-----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhH
Confidence            345667767676666666554     233456777663     245666666554444444 78889999998 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcc---cccc----------ccchhHHHHHHHHHHHHhccCccc-chh
Q 007604          104 VIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQD---CRKA----------STLQLGTFFAALYTLAVGTGGTKP-NIL  169 (596)
Q Consensus       104 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~~~~~~~~~l~g~g~g~~~~-~~~  169 (596)
                      .+....+....++.++.-. |.  ++...+-...+   ...+          .++....+++   ...+-.....+ ..+
T Consensus        78 ~~~~~~F~~~f~lF~~vl~-p~--~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv---~~elw~~~vvS~lFW  151 (472)
T TIGR00769        78 YTVISPFLGFFALFAFVIY-PL--SDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV---MAELWGSVVLSLLFW  151 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHh-cc--hhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHH
Confidence            9887777776666655420 10  00000000000   0000          0111112222   22222222333 778


Q ss_pred             hhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 007604          170 TIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQ  213 (596)
Q Consensus       170 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~  213 (596)
                      ++..|.++.++      -.+.++++..+.|+|..+++.+..++.
T Consensus       152 ~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       152 GFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999886      889999999999999999998888765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.98  E-value=4.8e-05  Score=60.35  Aligned_cols=65  Identities=15%  Similarity=0.151  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH
Q 007604           43 VFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF  109 (596)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  109 (596)
                      ++...+.-.+.++++.|++ +.|+++.++|.+.++..+...+++++.|+++||+ ||++.++....+
T Consensus        10 f~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            3344444556788999988 6999999999999999999999999999999999 988887766544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.97  E-value=0.00014  Score=79.96  Aligned_cols=145  Identities=12%  Similarity=0.058  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhh--cCCCh------hhhhhHHHHHHHHHHHhhhhh----HHHhhhhcchhHHHHHHHHHHH
Q 007604           44 FERMAYHGISSNLVMYLTDK--LHHGT------VKSANNVTNWGGTIWVTPIFG----AGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        44 ~~~~~~~~~~~~l~~yl~~~--lg~~~------~~~~~~~~~~~~~~~~~~~~~----G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      .....+|.+...++.++...  .+.+.      ...+++.+.-.+...+..++.    +++.||. +..+.+.+++++.+
T Consensus       283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~  361 (500)
T PRK09584        283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCS  361 (500)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHH
Confidence            44455666666666665431  11111      123344444554555555555    5556665 66688889999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++.+.++.......               ..+..+.+.+.+..++.++|.++..|...+++.+..|++.      |++.+
T Consensus       362 l~f~~l~~~~~~~~---------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~  420 (500)
T PRK09584        362 GAFLVLPLGAKFAN---------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIM  420 (500)
T ss_pred             HHHHHHHHHHHhcC---------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHH
Confidence            99888777642110               0111245567888999999999999999999999999986      99999


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q 007604          192 NWWMFSIFFGTLLGNTVLV  210 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~  210 (596)
                      +.+.....+|..++..+.+
T Consensus       421 g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        421 GSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9988877777777765654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.95  E-value=1.1e-07  Score=102.84  Aligned_cols=186  Identities=11%  Similarity=0.016  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH
Q 007604           34 ACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG  113 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~  113 (596)
                      .....+....+..+..+....+...++.+..+.+..  -.......+...++.+++.++.||+ |||++++.+..+.+++
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            344444444444444433344444455556676666  2223344566777888888999998 9999999998887777


Q ss_pred             HHHHH-HHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          114 MIVLA-LSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       114 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      .+.+. .......               .+...+...+....+.......+..+....+.+|.+|.+.      |.++.+
T Consensus       330 ~~~~~~~~~~~~~---------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~  388 (451)
T PF00083_consen  330 SLILGIIFFLGVS---------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIG  388 (451)
T ss_pred             ccccccccccccc---------------cccccccccceeeeeccccccccccccccccccccccccc------cccccc
Confidence            66664 1110000               0000011111111111112222345677788999999997      999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCce
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFY  243 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  243 (596)
                      +.+....+++.+++.+..++.+..+-...+.+.+...++..+..+...|+.
T Consensus       389 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET  439 (451)
T PF00083_consen  389 LSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET  439 (451)
T ss_pred             cccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence            988888899999988888887766633455555544444444444444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PTZ00207 hypothetical protein; Provisional

Probab=97.92  E-value=0.00036  Score=77.17  Aligned_cols=130  Identities=10%  Similarity=0.116  Sum_probs=91.4

Q ss_pred             HHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHH
Q 007604          387 CVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLM  466 (596)
Q Consensus       387 ~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~  466 (596)
                      +.++.+++.|++++|           +.+.+|.++.+++.++.++....               ....+.+.+.+..++.
T Consensus        77 ~~lp~G~L~Dr~G~R-----------~vllig~ll~~iG~ll~ala~~~---------------~i~~s~~~l~l~r~l~  130 (591)
T PTZ00207         77 FLLPYSFIYDYLGPR-----------PIFVLSMTVFCLGTLLFALTFQE---------------VIEGSVVRLSVYNGLM  130 (591)
T ss_pred             HHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHhcc---------------cccCcHHHHHHHHHHH
Confidence            344567777777766           55888888888888777764210               0013667777778899


Q ss_pred             HHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHH
Q 007604          467 GTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAI  546 (596)
Q Consensus       467 g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~  546 (596)
                      |+|.+..++.....+.+.+| +.||+++|+.....++|+.+.+.+...+..                 .+...++++.++
T Consensus       131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~v  192 (591)
T PTZ00207        131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMS  192 (591)
T ss_pred             HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHH
Confidence            99999999988888999887 789999999999999999865554444331                 123456777777


Q ss_pred             HHHHHHHHHHHHhh
Q 007604          547 LNVLNFVFFLVVAK  560 (596)
Q Consensus       547 ~~~v~~~~~~~~~~  560 (596)
                      +.++..++.+.+.+
T Consensus       193 l~~vv~ll~~~~vr  206 (591)
T PTZ00207        193 FALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHHhhee
Confidence            77666555555544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.90  E-value=0.00021  Score=78.68  Aligned_cols=139  Identities=16%  Similarity=0.279  Sum_probs=100.0

Q ss_pred             ccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcc
Q 007604          373 PASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV  452 (596)
Q Consensus       373 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (596)
                      ..++...+.+...+..|+++++.|.++||+.           +.+|.++..++.++.+-.                    
T Consensus        80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-----------~i~g~~l~vvG~Iv~atA--------------------  128 (599)
T PF06609_consen   80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-----------FIIGSLLGVVGSIVCATA--------------------  128 (599)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHhcchHH-----------HHHHHHHHHhHHHHhhcC--------------------
Confidence            3456667788888999999999999999952           777788888887776643                    


Q ss_pred             eehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCC
Q 007604          453 PLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNL  532 (596)
Q Consensus       453 ~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~  532 (596)
                       .+...++....+.|+|.+.... ....+.|..|.+.|+.+.++.....-+....++.+...+..      +.+|     
T Consensus       129 -~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~~W-----  195 (599)
T PF06609_consen  129 -QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HSGW-----  195 (599)
T ss_pred             -CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CCCc-----
Confidence             2556778888999998766654 45568999999999988877776555555566666555432      2344     


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHhh
Q 007604          533 NVCHLDYYYAFFAILNVLNFVFFLVVAK  560 (596)
Q Consensus       533 ~~~~~~~~f~~~~~~~~v~~~~~~~~~~  560 (596)
                           -|.|++.+++..+++++.+++.+
T Consensus       196 -----Rw~~~~~~i~~~i~~vl~~~fY~  218 (599)
T PF06609_consen  196 -----RWIFYIFIIWSGIALVLIFFFYF  218 (599)
T ss_pred             -----chHHHHHHHHHHHHHHHHHHHhC
Confidence                 46677777777777666555544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.88  E-value=2.8e-05  Score=80.78  Aligned_cols=181  Identities=13%  Similarity=0.082  Sum_probs=123.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhh--------HHHHHHH-HHHHhhhhhHHHhhhhcchhHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSAN--------NVTNWGG-TIWVTPIFGAGVAEAYLGRYWTF  103 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~--------~~~~~~~-~~~~~~~~~G~laD~~~Grk~~~  103 (596)
                      +.++..+...|..-+++|+...+...-++ ..|+.+.+...        ...+... +...+..+..++.|++ |||+..
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            55667788888888888877665555444 45554443332        1122222 2333666778889998 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhh
Q 007604          104 VIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKE  183 (596)
Q Consensus       104 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  183 (596)
                      +-+.+++.+..+.++...+-                 ..+  ....+...-+.+-++.-+...+.-.+-+|.||.+.   
T Consensus       382 ~~GF~~~~i~~~~~~~~y~~-----------------~~~--~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv---  439 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPYNQ-----------------LEN--TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV---  439 (538)
T ss_pred             HhhHHHHHHHHHHHcCCccc-----------------ccc--cCceeehHHHHHHHHhcCCCceeEEeehhhchHHH---
Confidence            99999998888777654320                 001  11111111222334444555566677899999997   


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhhhhhhhccc-----cccchhhhHHHHHHHHHHHHHHHhcC
Q 007604          184 KAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD-----DVGWALGYGLPALGLAIAIAIFLAGT  240 (596)
Q Consensus       184 ~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~-----~~g~~~~f~~~~~~~~~~~~~~~~~~  240 (596)
                         |+..-++...+.-.|+++|.....++.+     ..|.+.+|++.+.+.+++++..++..
T Consensus       440 ---R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  440 ---RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             ---hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence               9999999999999999999999999988     77899999999888887776654433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.81  E-value=9.2e-05  Score=83.47  Aligned_cols=135  Identities=17%  Similarity=0.138  Sum_probs=97.2

Q ss_pred             ccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhh----hhh-------h-h
Q 007604          373 PASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERY----RLS-------V-A  440 (596)
Q Consensus       373 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~----~~~-------~-~  440 (596)
                      .+.+.+...++.++..+++.++.+|.+||           +.+++|.++++++.++.++.+..    ..+       . .
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----------~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYFGTKLHRP-----------IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHhhcccCcc-----------eEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            46667778888888888888877776666           33777888888888777765410    000       0 0


Q ss_pred             --hccCcccc---------------CCcc-eehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHh
Q 007604          441 --KDHGIVEK---------------GQQV-PLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLG  502 (596)
Q Consensus       441 --~~~~~~~~---------------~~~~-~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~  502 (596)
                        +..-|...               .+.. ...+..+++.-++.|+|.+...+...+++.|.+|++.|+.+.|+++....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence              00011100               0000 12344566778999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHhhhhcc
Q 007604          503 VGNFLSSFLLSTVSDI  518 (596)
Q Consensus       503 ig~~lg~~~~~~i~~~  518 (596)
                      +|..+|+.+.+.+...
T Consensus       219 iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQI  234 (633)
T ss_pred             hhhHHHHHHHHHHHhc
Confidence            9999999999888753

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.78  E-value=7.6e-05  Score=75.93  Aligned_cols=112  Identities=16%  Similarity=0.164  Sum_probs=89.2

Q ss_pred             ccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcc
Q 007604          373 PASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV  452 (596)
Q Consensus       373 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (596)
                      .+.+.+...+...+..|+.+.+.|+++||           ..+.+|.+..+++.+.++..                    
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRk-----------pvll~c~~~va~s~ll~~~S--------------------  118 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRK-----------PVLLACLIGVALSYLLWALS--------------------  118 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCch-----------HHHHHHHHHHHHHHHHHHHH--------------------
Confidence            35556667888899999999999999999           34777777777777777653                    


Q ss_pred             eehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhc
Q 007604          453 PLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD  517 (596)
Q Consensus       453 ~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~  517 (596)
                       -+...++..=++.|+..+-..+. .+++.|.++++.|+.+++...+..++|..+||.+.+++..
T Consensus       119 -~~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  119 -RNFAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             -HHHHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence             23334444467778877766654 5899999999999999999999999999999999998864

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.76  E-value=0.00042  Score=76.44  Aligned_cols=151  Identities=7%  Similarity=-0.031  Sum_probs=91.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFY  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  110 (596)
                      .++.....+....+.+++-+....+....+-+..|.+... .....+..+...++..++.++.||+ |||+.++.+...+
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m  369 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGM  369 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHH
Confidence            4455555555566665555444433334444566666443 5555566777888888889999998 9999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhh
Q 007604          111 LMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSF  190 (596)
Q Consensus       111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  190 (596)
                      .++.++++...........           .........+....+.......+..|..+.+.+|.+|.+-      |+.+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~~  432 (513)
T KOG0254|consen  370 SICLVILAVVGVFALYYPN-----------SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSKG  432 (513)
T ss_pred             HHHHHHHHHHHHHhccCCC-----------cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hhhh
Confidence            9999888876432211000           0000112222222222333334445677788999999986      8888


Q ss_pred             HHHHHHHHHH
Q 007604          191 FNWWMFSIFF  200 (596)
Q Consensus       191 ~~~~~~~~~i  200 (596)
                      .++......+
T Consensus       433 ~s~~~~~n~~  442 (513)
T KOG0254|consen  433 ASLAVAVNWL  442 (513)
T ss_pred             HHHHHHHHHH
Confidence            7774444333

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.74  E-value=0.0012  Score=70.41  Aligned_cols=109  Identities=16%  Similarity=0.140  Sum_probs=88.6

Q ss_pred             cccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcce
Q 007604          374 ASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP  453 (596)
Q Consensus       374 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (596)
                      +.+......+-.+....++++.|+++-|           +.+.++++..++..++.++..                    
T Consensus        65 G~I~s~F~ysYal~qIp~GlLaDrlG~K-----------~vL~l~~l~Wsl~t~L~~fa~--------------------  113 (511)
T TIGR00806        65 NEIIPVLPYSHLAVLVPVFLLTDYLRYK-----------PVLVLQALSFVCVWLLLLLGT--------------------  113 (511)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            3444555566666777777777777766           447777777777777776642                    


Q ss_pred             ehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhh
Q 007604          454 LTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTV  515 (596)
Q Consensus       454 ~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i  515 (596)
                       +.+.+.+.-+++|++++... +...+++..+|++.|++++|+++....+|.++++.+.+.+
T Consensus       114 -Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       114 -SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             56778888899999999999 9999999999999999999999999999999999999984

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.67  E-value=0.033  Score=59.42  Aligned_cols=59  Identities=15%  Similarity=0.194  Sum_probs=47.0

Q ss_pred             ehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHH
Q 007604          454 LTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLL  512 (596)
Q Consensus       454 ~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~  512 (596)
                      .+...++...++--+|.=.......-++.|.+|++.||...|+-+..+.+-..+.-.++
T Consensus       354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556666777777777888889999999999999999999998888877766553

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.62  E-value=0.032  Score=57.14  Aligned_cols=159  Identities=14%  Similarity=0.112  Sum_probs=90.7

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhh-----hhcchhHH
Q 007604           28 KRGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAE-----AYLGRYWT  102 (596)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD-----~~~Grk~~  102 (596)
                      .|+..++++.+.+.......- +|....+|..++ .-|.|-++.+....++  .=+..-+++..+.|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP-~GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIP-LGLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCc-hhHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            455567788777776665443 566666666555 5566666555433222  22334556677777     87 99997


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChh
Q 007604          103 FVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPK  182 (596)
Q Consensus       103 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  182 (596)
                      -++- +-+.+|.....++...+     +...-|+.++      +...+....++.-+..+.--.++-...-.+..+++  
T Consensus       101 Wvvp-~q~llG~~mllLs~~v~-----~~~g~ng~~p------~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~--  166 (510)
T KOG3574|consen  101 WVVP-CQYLLGLFMLLLSYLVD-----RGLGGNGGLP------NVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN--  166 (510)
T ss_pred             eeee-hHHHHHHHHHHHhhCCC-----cccccCCCCc------chHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh--
Confidence            5542 22344444444443211     1111011112      33334344455666666666666666667777665  


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhhhhh
Q 007604          183 EKAHKLSFFNWWMFSIFFGTLLGNTVL  209 (596)
Q Consensus       183 ~~~~r~~~~~~~~~~~~ig~~l~~~~~  209 (596)
                          .+-+......+.+.|.+++..+.
T Consensus       167 ----lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  167 ----LGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             ----cCchhHHHHHHHhhhHHhhccee
Confidence                77777777778888888887554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.52  E-value=0.0012  Score=70.62  Aligned_cols=161  Identities=14%  Similarity=0.111  Sum_probs=106.1

Q ss_pred             cccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcce
Q 007604          374 ASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP  453 (596)
Q Consensus       374 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (596)
                      +++.+...++..+..|+.++...|...-  ++|        +.+|.+++.++-+++...+..                 +
T Consensus        74 G~viaa~slg~~i~~liF~~Ws~k~~~~--k~P--------li~s~ii~~~g~llY~~l~~~-----------------~  126 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWSNKTGSV--KKP--------LIVSFLIAIIGNLLYLALAYV-----------------P  126 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccccccCCc--ccC--------HHHHHHHHHHHHHHHHHHHhc-----------------c
Confidence            4555667888888889888865444432  233        889999999998888444321                 2


Q ss_pred             e-hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCcccc-C
Q 007604          454 L-TIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILN-N  531 (596)
Q Consensus       454 ~-~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~-~  531 (596)
                      . ..+++.++.++.|+|.+.... .-.|+++..-.+.|-++++..+....+|..+||.+...+..+.+..  ..|+++ .
T Consensus       127 ~~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G--~~i~~~~~  203 (488)
T KOG2325|consen  127 NGVKYLMLVARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG--FMILPGLI  203 (488)
T ss_pred             cchHHHHHHHHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc--eEEcCcce
Confidence            2 556777788999998655443 4578888777777888888887777788888887777765444211  122221 2


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007604          532 LNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKA  566 (596)
Q Consensus       532 ~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~  566 (596)
                      .|  .+...=|+++++.++..++...+.++..+..
T Consensus       204 ~n--~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  204 FN--MYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             EE--ecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            22  2344567777887878777777777654443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.36  E-value=0.0049  Score=56.05  Aligned_cols=111  Identities=13%  Similarity=0.083  Sum_probs=84.0

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccch
Q 007604           67 GTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQ  146 (596)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (596)
                      ++.....-.++.+....+..++.+.+.+++ |.|++++++.+.+.+-.+....                         .+
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-------------------------~~   88 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-------------------------PN   88 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-------------------------hh
Confidence            334444456667777888888889999997 9999999998887754433322                         16


Q ss_pred             hHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhh
Q 007604          147 LGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVL  209 (596)
Q Consensus       147 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~  209 (596)
                      .+.++.+-.+.|+|.+..+.+.-.++.+..+++.      |++..+++......+..+|.++.
T Consensus        89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen   89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence            6778889999999999999999999998887764      78877776666666666665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.34  E-value=0.0023  Score=70.74  Aligned_cols=129  Identities=14%  Similarity=0.203  Sum_probs=98.2

Q ss_pred             ccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCccee
Q 007604          375 SLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL  454 (596)
Q Consensus       375 ~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (596)
                      ...++..++.+++..+.+.+.|+++||           ..+..++++..++-+..++.                     .
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk-----------~~~~~~~~~~~i~~~~~a~a---------------------~  169 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRK-----------PVLLVSLLLFIIFGILTAFA---------------------P  169 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccH-----------HHHHHHHHHHHHHHHHHHHh---------------------C
Confidence            345566777777777778878888887           33666666666665555553                     4


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcc
Q 007604          455 TIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNV  534 (596)
Q Consensus       455 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~  534 (596)
                      +++.+++.-++.|++........+.+..|..+++.|+.+..+ ......++.+++....++..        +|       
T Consensus       170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W-------  233 (521)
T KOG0255|consen  170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW-------  233 (521)
T ss_pred             cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH-------
Confidence            777888888999999999999999999999999999999999 88888888888888777752        33       


Q ss_pred             cchhHHHHHHHHHHHHHHHH
Q 007604          535 CHLDYYYAFFAILNVLNFVF  554 (596)
Q Consensus       535 ~~~~~~f~~~~~~~~v~~~~  554 (596)
                         .+.+++..+..++.+++
T Consensus       234 ---r~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  234 ---RWLFWIISIPSGLFLLL  250 (521)
T ss_pred             ---HHHHHHHHHHHHHHHHH
Confidence               56677766666655554

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.24  E-value=0.0021  Score=67.19  Aligned_cols=186  Identities=11%  Similarity=-0.003  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      +.+.+++++..+.-..+++....+-.-+. .-|.+...+|.+.....++.+++.+++|.++||..+-|+++++......+
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v  344 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV  344 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            34566666666666666666555543332 45777789999999999999999999999999995566666666666666


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +...+...+..+                    .....++.--.+.|+...+..|.-.-+..|..-+..      -+.-.|
T Consensus       345 ~~~~l~~~t~~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsG  398 (480)
T KOG2563|consen  345 GTLMLLTCTLFL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSG  398 (480)
T ss_pred             HHHHHHHhhccC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------Ccccce
Confidence            642222222111                    134445555666777777777877777777654443      233444


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccccc----chhhhHHHHHHHHHHHHHHHhcCCceec
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVG----WALGYGLPALGLAIAIAIFLAGTPFYRH  245 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g----~~~~f~~~~~~~~~~~~~~~~~~~~~~~  245 (596)
                      +.+...++-+.+-..+-+...+..+    |...-+.......++.++..+.++++++
T Consensus       399 ll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  399 LLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             eEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence            4444444444444445555555554    3333333334444555555566665544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.98  E-value=0.0031  Score=67.97  Aligned_cols=153  Identities=14%  Similarity=0.126  Sum_probs=117.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHH
Q 007604           29 RGGWRACSFVVVYEVFERMAYHG-ISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAF  107 (596)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~  107 (596)
                      .++.|..+.+++..++....-.+ -...+..|+...++++..+.+...+..+....++.++...+--+.+|-|+++..|+
T Consensus       236 ~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl  315 (463)
T KOG2816|consen  236 VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGL  315 (463)
T ss_pred             cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHH
Confidence            34445556555555544333332 22244678888999999999999999999999999999844444459999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhh
Q 007604          108 FFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHK  187 (596)
Q Consensus       108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  187 (596)
                      ....++....++++                        +.++++....+.++. +...|+..++.+.+.++++      +
T Consensus       316 ~~~~~~~~~~af~~------------------------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~  364 (463)
T KOG2816|consen  316 LSEFLQLLLFAFAT------------------------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------Q  364 (463)
T ss_pred             HHHHHHHHHHHHhc------------------------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------c
Confidence            99999999999885                        666777766665544 5667999999999999997      9


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhc
Q 007604          188 LSFFNWWMFSIFFGTLLGNTVLVYI  212 (596)
Q Consensus       188 ~~~~~~~~~~~~ig~~l~~~~~~~l  212 (596)
                      |+.+++....-.+.+.++|.+-+.+
T Consensus       365 g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  365 GKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             cchhhHHHHHHHHhhhhhHHHHHHH
Confidence            9999999999999999888877655

>PRK03612 spermidine synthase; Provisional

Probab=96.91  E-value=0.048  Score=59.96  Aligned_cols=159  Identities=12%  Similarity=0.088  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHH---HHHHHHHhhccCCCCC
Q 007604           53 SSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMG---MIVLALSVSLSGLKPP  129 (596)
Q Consensus        53 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~  129 (596)
                      -....-.+.-.+|-+..+.+.+++++.++..+|..++|+++++. -|+...+ -+.+..++   ..++.......     
T Consensus        34 Ev~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~-e~~i~l~~~~~~~ll~~~~~~~-----  106 (521)
T PRK03612         34 ELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAV-ELLLALLGGLSALILYAAFAFQ-----  106 (521)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----
Confidence            34444555667898999999999999999999999999887543 3332221 11111111   11111111000     


Q ss_pred             CCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhh
Q 007604          130 PCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVL  209 (596)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~  209 (596)
                                    ......++...++.++..|+..|....+..+...++       -++..+..|....+|+++|.++.
T Consensus       107 --------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~-------~g~~~g~ly~~ntlGa~~G~l~~  165 (521)
T PRK03612        107 --------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQH-------LGHNVATVLAADYLGALVGGLAF  165 (521)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------hhhhhhhhHhHHhHHHHHHHHHH
Confidence                          001112233344566777777776666555432211       45667778888899999999888


Q ss_pred             hhccc-cccc-hhhhHHHHHHHHHHHHHHHhc
Q 007604          210 VYIQD-DVGW-ALGYGLPALGLAIAIAIFLAG  239 (596)
Q Consensus       210 ~~l~~-~~g~-~~~f~~~~~~~~~~~~~~~~~  239 (596)
                      +++.- ..|- +..+.++++..+++++.++..
T Consensus       166 ~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~  197 (521)
T PRK03612        166 PFLLLPRLGLIRTAALTGSLNLLAALVFLWLF  197 (521)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            87643 4664 444444444445554444433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.77  E-value=0.013  Score=46.98  Aligned_cols=73  Identities=5%  Similarity=-0.015  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 007604           47 MAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSV  121 (596)
Q Consensus        47 ~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~  121 (596)
                      ++.|..+..+| .+.++.++|.++.+++.+.-++++.+|.+...++.++. .+++.+..++++..+.++.+++..
T Consensus         6 igRFayTplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    6 IGRFAYTPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hHHHHHHhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444555555 56779999999999999999999999999999999987 889999999999999998888764

Note that many members are hypothetical proteins.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.75  E-value=0.0024  Score=67.77  Aligned_cols=121  Identities=9%  Similarity=0.120  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchh--H
Q 007604          413 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESM--K  490 (596)
Q Consensus       413 ~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~--r  490 (596)
                      +.+.+|.++++++.++++..+.                   .....+.+.+.++++|.++.=+...++..|+.|++.  |
T Consensus        93 ~tI~lGail~~iGh~~L~~~~~-------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dprr  153 (498)
T COG3104          93 RTIVLGAILMAIGHLVLAISSV-------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRR  153 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc-------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCccc
Confidence            6689999999999988876420                   234567778888899999999999999999997543  5


Q ss_pred             HHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 007604          491 SLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEV  568 (596)
Q Consensus       491 g~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~  568 (596)
                      -.+.+++.+...+|+.+++.+.+++...                .+++..|.+.++-+.++++.++++.++.+.....
T Consensus       154 D~gFt~fY~~iNiGsl~~p~i~~~~~~~----------------~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~  215 (498)
T COG3104         154 DGGFTLFYMGINIGSLIAPIITGLLAIN----------------YGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGV  215 (498)
T ss_pred             CCCccEEEEEeehHHHHHHHHHHHHHHh----------------hCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCC
Confidence            5566777777889999999999988642                2356778887888888888888877666554443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.68  E-value=0.029  Score=55.29  Aligned_cols=92  Identities=13%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchh
Q 007604          410 TLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESM  489 (596)
Q Consensus       410 ~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~  489 (596)
                      +++..+.+|.+...+++........++.              .+.+.|.+....++.+.+....+.+...-..+.+|. .
T Consensus        64 gp~~~l~iG~~~~~~GY~~~~l~~~~~i--------------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~  128 (250)
T PF06813_consen   64 GPWVVLLIGAVLGFVGYGLLWLAVSGRI--------------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S  128 (250)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCcc--------------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence            3445678888888888876655432211              124666676667777788888888888888899984 7


Q ss_pred             HHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 007604          490 KSLGTSYSMTTLGVGNFLSSFLLSTVS  516 (596)
Q Consensus       490 rg~~~g~~~~~~~ig~~lg~~~~~~i~  516 (596)
                      ||++.|+.....++++.+-+.+...+.
T Consensus       129 RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  129 RGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             cCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            999999999999999988777766654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.63  E-value=0.00032  Score=77.22  Aligned_cols=135  Identities=15%  Similarity=0.156  Sum_probs=3.0

Q ss_pred             ccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhh----hhhhhh-----h--
Q 007604          373 PASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTER----YRLSVA-----K--  441 (596)
Q Consensus       373 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~----~~~~~~-----~--  441 (596)
                      .+.+.+.+-++.++...++.+    +++|.       ++.+.+++|.++++++.++.++.+-    +.....     .  
T Consensus        40 ~G~i~s~~di~~~~~~~~vsy----~g~~~-------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~  108 (539)
T PF03137_consen   40 SGLISSSYDIGSLVVVLFVSY----FGGRG-------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSS  108 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----Hhhhc-------CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccc
Confidence            455566667777777777666    45552       3446799999999999888775442    111100     0  


Q ss_pred             -ccCcc---------------cc--CCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhH
Q 007604          442 -DHGIV---------------EK--GQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGV  503 (596)
Q Consensus       442 -~~~~~---------------~~--~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~i  503 (596)
                       +..+.               +.  .......++.+++..++.|+|..-.++...+|+-|.++++..+.+.|+......+
T Consensus       109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l  188 (539)
T PF03137_consen  109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL  188 (539)
T ss_dssp             -------------------------------------------SSS----------------------------------
T ss_pred             cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence             00111               00  1122334556777889999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHhhhhcc
Q 007604          504 GNFLSSFLLSTVSDI  518 (596)
Q Consensus       504 g~~lg~~~~~~i~~~  518 (596)
                      |..+|-.+.+.....
T Consensus       189 GPa~Gf~lg~~~L~~  203 (539)
T PF03137_consen  189 GPALGFLLGSFCLRI  203 (539)
T ss_dssp             ---------------
T ss_pred             cHHHHHHHHHHHHhc
Confidence            999998888777643

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.86  E-value=0.063  Score=56.52  Aligned_cols=125  Identities=14%  Similarity=0.117  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccch---h
Q 007604          413 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPES---M  489 (596)
Q Consensus       413 ~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~---~  489 (596)
                      +.+.+|.++..+|.+++.+.......            ....+...+.+.+.++++|.++.=|...++..++++++   .
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~   69 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSL------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR   69 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchh------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence            45777888888888775544321000            01234456777888999999999999999999999866   4


Q ss_pred             HHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007604          490 KSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYK  565 (596)
Q Consensus       490 rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~  565 (596)
                      |..+...+.....+|..++..+.+++.+                ..++...|++.++..+++.+.++...++++.+
T Consensus        70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   70 RDSFFNWFYWGINIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhhHHHHHHHHhhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            6667777778888999999888887753                12446678877777787877777776666655

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.78  E-value=0.15  Score=46.35  Aligned_cols=62  Identities=15%  Similarity=0.186  Sum_probs=54.3

Q ss_pred             ehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhh
Q 007604          454 LTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTV  515 (596)
Q Consensus       454 ~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i  515 (596)
                      .+.+.+++.-++.|++.++.+++.-.++.+...++.+++..|+++.....+..+|..+.-.+
T Consensus        87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667788889999999999999999999999999999999999999888888888776554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.70  E-value=0.3  Score=52.19  Aligned_cols=146  Identities=8%  Similarity=-0.049  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhh
Q 007604           43 VFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVS  122 (596)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~  122 (596)
                      .+.+++.-+.-+.+..|+..+ |+++...|..=+...+....++....++.+|+ |..|+=++++.....+..++..+-.
T Consensus       268 alLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~  345 (432)
T PF06963_consen  268 ALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFW  345 (432)
T ss_pred             HHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHh
Confidence            334444444456677888866 99999999999999999999999999999998 9999999999888777766665532


Q ss_pred             ccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 007604          123 LSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGT  202 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  202 (596)
                      .+...          .    ...+...++.+..+-=+|.=++--+..-++-|..|+++      |+...+..+...++.-
T Consensus       346 ~~~~~----------~----~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~  405 (432)
T PF06963_consen  346 APGSP----------F----SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFE  405 (432)
T ss_pred             cCCCC----------c----hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHH
Confidence            22100          0    12355666667777777777888888999999999886      9999999888888888


Q ss_pred             HHhhhhhh
Q 007604          203 LLGNTVLV  210 (596)
Q Consensus       203 ~l~~~~~~  210 (596)
                      ++-..+.-
T Consensus       406 ll~~~~~i  413 (432)
T PF06963_consen  406 LLSFVLTI  413 (432)
T ss_pred             HHHHHHHh
Confidence            77765543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.63  E-value=0.087  Score=59.12  Aligned_cols=136  Identities=12%  Similarity=0.145  Sum_probs=94.7

Q ss_pred             ccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhh----hhhhhh-------h
Q 007604          373 PASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTER----YRLSVA-------K  441 (596)
Q Consensus       373 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~----~~~~~~-------~  441 (596)
                      .+.+...+-++..+....+.+    ++.|.       .+.+.+++|.++++++.++.++.+.    +.++..       .
T Consensus       134 sG~I~s~~dig~~l~i~fVsY----fG~r~-------HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~  202 (735)
T KOG3626|consen  134 SGLIASSYDIGNLLLIIFVSY----FGSRG-------HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVEN  202 (735)
T ss_pred             ceeEeeecccchhhhhHhHHH----hcccc-------CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccC
Confidence            455556666666666666666    45552       3336689999999999888876542    111110       0


Q ss_pred             c-c-----------C-ccccC-------CcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHH
Q 007604          442 D-H-----------G-IVEKG-------QQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTL  501 (596)
Q Consensus       442 ~-~-----------~-~~~~~-------~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~  501 (596)
                      + .           . +.++.       ..+...+..++...++.|+|....++.+.+|+-|.+.++....+.|+.....
T Consensus       203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~  282 (735)
T KOG3626|consen  203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMA  282 (735)
T ss_pred             CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHH
Confidence            1 0           0 11110       1122234456677899999999999999999999999999999999999999


Q ss_pred             hHHHHHHhHHHhhhhccc
Q 007604          502 GVGNFLSSFLLSTVSDIT  519 (596)
Q Consensus       502 ~ig~~lg~~~~~~i~~~~  519 (596)
                      .+|-++|-.+.+......
T Consensus       283 ~lGPaiGfllgS~~l~lY  300 (735)
T KOG3626|consen  283 ILGPAIGFLLGSFCLKLY  300 (735)
T ss_pred             HhhhHHHHHHHHHHHHee
Confidence            999999999988887654

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.97  E-value=1.6  Score=49.48  Aligned_cols=317  Identities=12%  Similarity=-0.002  Sum_probs=178.6

Q ss_pred             cCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccc
Q 007604           64 LHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKAS  143 (596)
Q Consensus        64 lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (596)
                      .+...........++.....+..+.....+|..-|+-..+..-++..+++.+...+.. ++               ..+.
T Consensus        15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~---------------a~~~   78 (654)
T TIGR00926        15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FG---------------AIPS   78 (654)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hc---------------cCcc
Confidence            3333445556777888888888999999999886677777777777777777776553 11               0011


Q ss_pred             cchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccc-chh--
Q 007604          144 TLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVG-WAL--  220 (596)
Q Consensus       144 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~--  220 (596)
                      ........++.+.+.++.++..+.-+.+.+++.+..++   ..+.+..+++++..+.+.+ |.+++..+..... +..  
T Consensus        79 ~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~f  154 (654)
T TIGR00926        79 SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCF  154 (654)
T ss_pred             cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccc
Confidence            11123345667778889999999999999999987651   3345688888888777665 4545555544332 211  


Q ss_pred             ----hhHH-HHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCccccc
Q 007604          221 ----GYGL-PALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIG  295 (596)
Q Consensus       221 ----~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (596)
                          .+.. .++..++.++.++......+..++++.......++.+......+.                       +..
T Consensus       155 g~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~-----------------------~~~  211 (654)
T TIGR00926       155 GCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK-----------------------RFS  211 (654)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH-----------------------hhc
Confidence                1332 333344444454555444444444332222222222211111000                       000


Q ss_pred             CCcchhhhhhhhhhcCCCCCccccc--chhhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCcccccc
Q 007604          296 STQNLRFFNKAAVKTGATNPWILCS--VSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPP  373 (596)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  373 (596)
                      ..+      ..     ....|....  +...++.+...+++.++...+.+++.+.+.......+..++++..+ .+...+
T Consensus       212 ~~~------~~-----~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g~~  279 (654)
T TIGR00926       212 TRS------EH-----WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGGFE  279 (654)
T ss_pred             cCC------cc-----cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCCEe
Confidence            000      00     001111111  1223345667777777777777777766655555555444444322 111112


Q ss_pred             cccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007604          374 ASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLS  438 (596)
Q Consensus       374 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~  438 (596)
                      .....+..+-.++..++...+..++-+++.++   ..+.+.+.-+.+.+.++.+.+.+.......
T Consensus       280 ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~  341 (654)
T TIGR00926       280 IQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLK  341 (654)
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23345567777777777777777888886432   345667888888888888888887766555

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=94.74  E-value=4.6  Score=41.72  Aligned_cols=110  Identities=16%  Similarity=0.031  Sum_probs=62.0

Q ss_pred             cccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcce
Q 007604          374 ASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP  453 (596)
Q Consensus       374 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (596)
                      +..........++.+++.+.+.|+++||+.           -.+-.++.+++    ++...                  .
T Consensus        72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~-----------cl~~cily~~s----cl~k~------------------~  118 (354)
T PF05631_consen   72 AILFVAGFASSAIFGTFVGSLADRYGRKKA-----------CLLFCILYSLS----CLTKH------------------S  118 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchHH-----------HHHHHHHHHHH----HHHHh------------------c
Confidence            344555677788899999999999998831           11222222222    22110                  2


Q ss_pred             ehhHHHHHHHHHHHHHHHHHhhhhHHHHH-h----hccchhHHHHHHHHH-HHHhHHHHHHhHHHhhhh
Q 007604          454 LTIFIMLPQFVLMGTADAFLEVAKIEFFY-D----QAPESMKSLGTSYSM-TTLGVGNFLSSFLLSTVS  516 (596)
Q Consensus       454 ~~~~~li~~~~l~g~~~~~~~~~~~~~~~-~----~~P~~~rg~~~g~~~-~~~~ig~~lg~~~~~~i~  516 (596)
                      .+...+++.=++.|++..+.....=++.. |    -.|++..+...+... +.+.+-.+++..+...+.
T Consensus       119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~  187 (354)
T PF05631_consen  119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLA  187 (354)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence            35566777778888888777766555443 2    245554444444433 334444555555554444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.60  E-value=0.48  Score=51.02  Aligned_cols=90  Identities=22%  Similarity=0.218  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhc---cchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccC
Q 007604          455 TIFIMLPQFVLMGTADAFLEVAKIEFFYDQA---PESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNN  531 (596)
Q Consensus       455 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~---P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~  531 (596)
                      +.......+++..+|..+.....-+...|..   |.+ +|..++....+..+|+.++..+.+...+..            
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~------------  151 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF------------  151 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC------------
Confidence            3344555667888899999999988888887   444 899999999999999999999988775422            


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007604          532 LNVCHLDYYYAFFAILNVLNFVFFLVVAKF  561 (596)
Q Consensus       532 ~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  561 (596)
                          +.+..|.+.+++..+..+..+++..+
T Consensus       152 ----~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  152 ----GPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             ----CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence                22344666666656555555555443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=94.41  E-value=4.5  Score=43.90  Aligned_cols=59  Identities=8%  Similarity=-0.115  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHhh-hhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhc
Q 007604          459 MLPQFVLMGTADAFLEV-AKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD  517 (596)
Q Consensus       459 li~~~~l~g~~~~~~~~-~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~  517 (596)
                      ....++...+-...+.. ..|.++.|....+...+..++......+|..+|+.+...+..
T Consensus       131 ~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       131 FALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444 789999999999999999999999999999999999888764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.03  E-value=0.31  Score=51.34  Aligned_cols=140  Identities=8%  Similarity=0.053  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHH--HHHHHHH
Q 007604           38 VVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFF--FYLMGMI  115 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~--~~~i~~~  115 (596)
                      +.++.++|++..-|+..-+..  .....--..+.-+....|++|-+++.--.-++  |+   |++.+.+.+  +..+..+
T Consensus       252 L~lVY~aEY~InqGv~~tl~f--p~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri---r~lwils~LQ~~nl~~~~  324 (402)
T PF02487_consen  252 LFLVYFAEYFINQGVAPTLLF--PNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI---RRLWILSLLQVINLVFLL  324 (402)
T ss_pred             HHHHHHHHHHHHhchHHHhcC--CccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh---hhHHHHHHHHHHHHHHHH
Confidence            444555555544444333221  12222233455566677777766665443322  33   444443332  3333333


Q ss_pred             HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 007604          116 VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWM  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  195 (596)
                      +.+.-..+|                     +.+..++..+..|+..|....+....+.|..|+++      |....+...
T Consensus       325 l~s~~~fip---------------------si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vs  377 (402)
T PF02487_consen  325 LQSWYRFIP---------------------SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVS  377 (402)
T ss_pred             HHHHHHHhh---------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHH
Confidence            333322222                     67777777788899999999999999999888775      999999888


Q ss_pred             HHHHHHHHHhhhhhhh
Q 007604          196 FSIFFGTLLGNTVLVY  211 (596)
Q Consensus       196 ~~~~ig~~l~~~~~~~  211 (596)
                      ++-++|..++..++-+
T Consensus       378 vsds~GI~lAgll~l~  393 (402)
T PF02487_consen  378 VSDSLGILLAGLLGLP  393 (402)
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            8888888877755443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.98  E-value=2.1  Score=46.02  Aligned_cols=115  Identities=15%  Similarity=0.106  Sum_probs=74.4

Q ss_pred             HHHHHHhhhhhHHHhhhh--cchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHH
Q 007604           79 GGTIWVTPIFGAGVAEAY--LGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYT  156 (596)
Q Consensus        79 ~~~~~~~~~~~G~laD~~--~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  156 (596)
                      ..+..++.++.+.+.+|.  +||++++.++.++..++.++.-++.  |.-.+.+    .+.+....-+.+.....+.-++
T Consensus       289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~~----~t~~~~~~~~~~~~~~~ii~~l  362 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPLR----PTDSPPLLFTPSYYLALIIGFL  362 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccCCCC----CCcccccccccchhHHHHHHHH
Confidence            344445555555565433  3899999999999888887776653  2111100    0111222222345455666678


Q ss_pred             HHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhh
Q 007604          157 LAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGN  206 (596)
Q Consensus       157 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~  206 (596)
                      .|++-+......+.++++..|++       |..+++++-+--.++..++-
T Consensus       363 ~G~~D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  363 LGFGDACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             HhhHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999765       88888887666666665443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.82  E-value=1.1  Score=44.14  Aligned_cols=141  Identities=11%  Similarity=0.032  Sum_probs=90.4

Q ss_pred             hhhHHHHHHHHHHHhhhhhHHHhhhhcchh--HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhH
Q 007604           71 SANNVTNWGGTIWVTPIFGAGVAEAYLGRY--WTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLG  148 (596)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~G~laD~~~Grk--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (596)
                      -|.+.+.+.++.++|.-+...+..|- ..|  ..+.+...+..+...+..+..+ .                .|+..++.
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~-v----------------sP~kes~~  345 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSS-V----------------SPSKESPS  345 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhc-c----------------CCCcCCch
Confidence            46777777777777777666665553 322  3445555544444443333321 1                11223455


Q ss_pred             HHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHH
Q 007604          149 TFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALG  228 (596)
Q Consensus       149 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~  228 (596)
                      .-+++..++-.+.|.++|...-+=.+..|+++      |.+.++++..-.|+-..++-...-.-....+-|..|.++.+.
T Consensus       346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~  419 (454)
T KOG4332|consen  346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAF  419 (454)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHH
Confidence            55777888888999999999999999999987      999999998888876654432211112234567889888877


Q ss_pred             HHHHHHH
Q 007604          229 LAIAIAI  235 (596)
Q Consensus       229 ~~~~~~~  235 (596)
                      ..++.+.
T Consensus       420 ~~~a~i~  426 (454)
T KOG4332|consen  420 LFVASIL  426 (454)
T ss_pred             HHHHHHH
Confidence            6666544

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=92.35  E-value=1.8  Score=43.43  Aligned_cols=59  Identities=15%  Similarity=0.238  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHh
Q 007604          455 TIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLS  513 (596)
Q Consensus       455 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~  513 (596)
                      +++......++=|+-.+...+..+--+.+..+++.|-.+|+.......+|..++..+.-
T Consensus       341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal  399 (409)
T KOG3880|consen  341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL  399 (409)
T ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence            33333333333355445555555556677788999999999999888888888777653

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.84  E-value=23  Score=38.76  Aligned_cols=170  Identities=14%  Similarity=0.093  Sum_probs=92.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CChhhhhhHHHHHHH-HHHHhhhhhHHHhhhhcchhHHHH
Q 007604           29 RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLH---HGTVKSANNVTNWGG-TIWVTPIFGAGVAEAYLGRYWTFV  104 (596)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grk~~~~  104 (596)
                      +..+++++.+.+..++..+.+-     +.--++|.+=   .++.....+=....+ +..+...+-.++++++ +|.+++.
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~-----~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy   93 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYT-----ILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFY   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence            4455677777777776655432     2223333331   234444444332222 5566677789999998 9999998


Q ss_pred             HHHHHHHHHHHHHHHHhhcc---CCCCCCCCCCCCcc---------ccccccchhHHHHHHHHHHHHhccCcccchhhhh
Q 007604          105 IAFFFYLMGMIVLALSVSLS---GLKPPPCNDINSQD---------CRKASTLQLGTFFAALYTLAVGTGGTKPNILTIA  172 (596)
Q Consensus       105 ~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~  172 (596)
                      +....+.....+.++.- .|   .++++.--+ +.+.         -..-.++....+++.-  --.|.-...-..+.+.
T Consensus        94 ~~~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~-~~~~~~~~~~~~~i~~~~~Wt~slfYv~a--ElwgsvvlSlLFW~fA  169 (491)
T PF03219_consen   94 IIIIPFLGFFALFAFVL-YPNRDILHPDAFAD-KLLAILPPGFKGFIAMFRNWTFSLFYVMA--ELWGSVVLSLLFWGFA  169 (491)
T ss_pred             HHHHHHHHHHHHHHHHH-hhchhhcCCCHHHH-HhhhhccchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            77776665555554431 11   111100000 0000         0000001111111111  1122222223468889


Q ss_pred             hccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccc
Q 007604          173 ADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD  214 (596)
Q Consensus       173 ~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~  214 (596)
                      .|.++.++      -.+.++++..+.|+|.+++..+..++.+
T Consensus       170 N~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  170 NEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999886      8899999999999999999888777766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=91.51  E-value=2.4  Score=41.72  Aligned_cols=59  Identities=12%  Similarity=0.138  Sum_probs=36.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhc-----cccccchhhhHHHHHHHHHHHHHHHhcCCceec
Q 007604          187 KLSFFNWWMFSIFFGTLLGNTVLVYI-----QDDVGWALGYGLPALGLAIAIAIFLAGTPFYRH  245 (596)
Q Consensus       187 r~~~~~~~~~~~~ig~~l~~~~~~~l-----~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  245 (596)
                      |+.......++.++|+++..+..-.-     .....|++.+.+.+++.++-++++.+..+++..
T Consensus         4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~   67 (267)
T PF07672_consen    4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDI   67 (267)
T ss_pred             cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            66666667778888888774332111     111349988888777766666666666555443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.92  E-value=2.2  Score=45.89  Aligned_cols=57  Identities=16%  Similarity=0.170  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhh
Q 007604          146 QLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTV  208 (596)
Q Consensus       146 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~  208 (596)
                      +-+..++..++.|+..|-....+..+..+..++++      |..+..+..++.++|-.+|..+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666888999999999999999999988765      7777777777777877766643

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.92  E-value=26  Score=37.73  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHh
Q 007604          455 TIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLS  513 (596)
Q Consensus       455 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~  513 (596)
                      +-++.++..+++|+..|........+..+.++++.|..+..+..++-.+|-.+|..+.-
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666899999999999999999999999999999999999888888888887643

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=88.81  E-value=0.97  Score=47.89  Aligned_cols=167  Identities=16%  Similarity=0.139  Sum_probs=102.9

Q ss_pred             hhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCC
Q 007604          328 TQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPR  407 (596)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~  407 (596)
                      ++++++..+.+..-..|..-.++.+-+..+ ......       -...++...++..++.+|+.+...|+-..|+.+|+ 
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk-------~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR-  102 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHK-------WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR-  102 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcc-------cccccccccccccceeccccccccccccccccccc-
Confidence            445555555555555555443333322111 112222       23556777888889999999998888777765432 


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCC--cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhc
Q 007604          408 GITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQ--QVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQA  485 (596)
Q Consensus       408 ~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~  485 (596)
                           .-+.++....++++...++..+....      ++|+..  .....+...++.+.+.-++......+.-++..+..
T Consensus       103 -----PfI~~~s~~i~~~l~Lig~aaDig~~------lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~  171 (498)
T KOG0637|consen  103 -----PFILAGSLLIAVSLFLIGYAADIGLL------LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLA  171 (498)
T ss_pred             -----chHHHhhHHHHHHHhhhhhHhhhhHH------hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhc
Confidence                 22555666677777666654321111      122211  11234445556667777777777777889999998


Q ss_pred             cchhHHH-HHHHHHHHHhHHHHHHhHHHhh
Q 007604          486 PESMKSL-GTSYSMTTLGVGNFLSSFLLST  514 (596)
Q Consensus       486 P~~~rg~-~~g~~~~~~~ig~~lg~~~~~~  514 (596)
                      -++.+-+ +++++.+..++|+.+|-.+.++
T Consensus       172 ~~d~~~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  172 RGDAKKTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             cChhhhhccchhHHHHHHhcceeeeecccc
Confidence            7777777 9999999999999999887663

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=87.24  E-value=8  Score=39.80  Aligned_cols=95  Identities=12%  Similarity=0.104  Sum_probs=60.0

Q ss_pred             ehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCC-
Q 007604          454 LTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNL-  532 (596)
Q Consensus       454 ~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~-  532 (596)
                      -++|+.-..++++.....+..+.+..-+++.-..+.-|...|++.+..   -.+-+.+.-.+.+..       ++.=+. 
T Consensus       324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvA---l~lQsilT~iVvd~~-------g~~L~ir  393 (433)
T KOG3810|consen  324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVA---LILQSILTLIVVDDR-------GLGLDIR  393 (433)
T ss_pred             cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHH---HHHHHhheEEEEccc-------ccCCCcc
Confidence            367888888999988888888888888887777888888888877643   333333333333211       110011 


Q ss_pred             -cccchhHHHHHHHHHHHHHHHHHHHH
Q 007604          533 -NVCHLDYYYAFFAILNVLNFVFFLVV  558 (596)
Q Consensus       533 -~~~~~~~~f~~~~~~~~v~~~~~~~~  558 (596)
                       .-.-+..+|.+++++.+++....+..
T Consensus       394 ~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  394 TQFVVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             eeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence             01123467888888888776654443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=85.68  E-value=13  Score=37.85  Aligned_cols=117  Identities=16%  Similarity=0.077  Sum_probs=66.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHH
Q 007604           29 RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFF  108 (596)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  108 (596)
                      +...|.++++....+ ..++.|.-..++......  ++.....    +...+......++.+.+..++ |-|.++.++..
T Consensus        25 ~~~~knv~i~s~~fl-~~f~a~~gl~nlq~~vn~--~lg~~sl----~~~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~   96 (390)
T KOG3097|consen   25 LGILKNVLILSIAFL-LTFTAYLGLQNLQTSVNY--DLGTVSL----GALYLSLIDSSMFMPLLIRFL-GTKWTMVLAVF   96 (390)
T ss_pred             cchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhc--Ccccchh----hhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence            344456665544333 333434334444444433  2222222    233444455555666667665 99999988876


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCC
Q 007604          109 FYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDE  178 (596)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~  178 (596)
                      .+..-....-     .                    +.+..++.+-...|+|.+..+..--+|+++.-..
T Consensus        97 ~Y~lyiA~Nl-----~--------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~  141 (390)
T KOG3097|consen   97 PYALYIAANL-----E--------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN  141 (390)
T ss_pred             HHHHHHHhhc-----c--------------------hhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence            6654322211     1                    1555667777788999998888777777766544

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=85.66  E-value=59  Score=35.40  Aligned_cols=62  Identities=15%  Similarity=0.105  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccc
Q 007604          458 IMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDIT  519 (596)
Q Consensus       458 ~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~  519 (596)
                      .++..+++..+.....+++..++-+.++.|.+-|++|.+.|+...+|+---..++-.+.+..
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            34556788888888889999999999999999999999999988888776666655555443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=84.98  E-value=9  Score=37.35  Aligned_cols=62  Identities=16%  Similarity=0.163  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHhhccc-hhHHHHHHHHHH-HHhHHHHHHhHHHhhhhc
Q 007604          456 IFIMLPQFVLMGTADAFLEVAKIEFFYDQAPE-SMKSLGTSYSMT-TLGVGNFLSSFLLSTVSD  517 (596)
Q Consensus       456 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~-~~~ig~~lg~~~~~~i~~  517 (596)
                      .+.++....+.|++.+...+...+++.+..|+ +.|+...+.... ...+|..+++.+.+.+..
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555668888888999999999999998 778888888888 577788888866666543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=84.61  E-value=34  Score=36.36  Aligned_cols=61  Identities=28%  Similarity=0.317  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 007604          455 TIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS  516 (596)
Q Consensus       455 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~  516 (596)
                      +.+++-+.-++.|++... ..+.++|+...+|++.--++++......-+|..+|..++-.+.
T Consensus        93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv  153 (412)
T PF01770_consen   93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV  153 (412)
T ss_pred             cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777888877654 6778899999999999999998888887788777777776654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=84.35  E-value=68  Score=35.06  Aligned_cols=43  Identities=14%  Similarity=-0.055  Sum_probs=38.8

Q ss_pred             hhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhc
Q 007604          475 VAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD  517 (596)
Q Consensus       475 ~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~  517 (596)
                      ...|.++.|..+.+...+..++......+|..+++.+...+..
T Consensus       163 lLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  163 LLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999888865

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=83.06  E-value=67  Score=33.98  Aligned_cols=57  Identities=19%  Similarity=0.137  Sum_probs=46.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHH
Q 007604          455 TIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFL  511 (596)
Q Consensus       455 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~  511 (596)
                      +-+|.+....++|+..+-.......+..+.+|++.+-.+..+....-..|-..|..+
T Consensus       342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            456777888999999998888888899999998888888888887777777777665

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=82.85  E-value=3.6  Score=40.51  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=18.5

Q ss_pred             cchhHHHHHHHHHHHHhHHHHHHhHHHhhh
Q 007604          486 PESMKSLGTSYSMTTLGVGNFLSSFLLSTV  515 (596)
Q Consensus       486 P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i  515 (596)
                      .+-+|..+.|+-.+..+..+.+.....+.+
T Consensus        73 vpii~~iGLglg~liW~s~n~l~Gw~~grf  102 (254)
T PF07857_consen   73 VPIIKTIGLGLGMLIWGSVNCLTGWASGRF  102 (254)
T ss_pred             hhHhhhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence            355666666666666666666666665544

The region concerned is approximately 280 residues long.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=80.68  E-value=0.51  Score=48.29  Aligned_cols=116  Identities=11%  Similarity=0.052  Sum_probs=3.8

Q ss_pred             hHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccc-cchhHHHH
Q 007604           73 NNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKAS-TLQLGTFF  151 (596)
Q Consensus        73 ~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  151 (596)
                      .....|.++..+|..+.++.-=+...+|++. +..+.-.+...+..+           ||.... +...+. -.+-+..+
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~-----------cn~~p~-~~~~~~~~~~d~~~~  252 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLL-----------CNVQPR-PRYLPVLFNSDAWFI  252 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHH-----------HHhhcc-cccCCCcccchHHHH
Confidence            3466789999999998887531110234333 333332222222222           111100 000000 01344556


Q ss_pred             HHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 007604          152 AALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNT  207 (596)
Q Consensus       152 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~  207 (596)
                      +..++.|+..|-....+..+.++..++++      |..+-.+..++.++|-.+|..
T Consensus       253 i~~~l~g~TNGyl~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~  302 (309)
T PF01733_consen  253 ILMLLFGFTNGYLSTLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSV  302 (309)
T ss_dssp             --------------HHHH--------------------------------------
T ss_pred             HHHHHHHHccchhhhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence            66778999999999999999999999776      777766666777777766653

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=80.40  E-value=92  Score=33.79  Aligned_cols=170  Identities=13%  Similarity=0.014  Sum_probs=102.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---hhhhhhHHHHHHH-HHHHhhhhhHHHhhhhcchhHHHHH
Q 007604           30 GGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHG---TVKSANNVTNWGG-TIWVTPIFGAGVAEAYLGRYWTFVI  105 (596)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~---~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grk~~~~~  105 (596)
                      ..++++..+.+..+|..+.+.     +.--+++.+..+   +....++-+...+ ++.+..++-+++.++. .|.+++.+
T Consensus        24 ~E~~kflpl~Ll~f~I~~ny~-----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~   97 (509)
T COG3202          24 YELKKFLPLALLFFCILFNYN-----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYI   97 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHH
Confidence            355667777777666655433     223455665544   4455555555555 7778888889999998 99999998


Q ss_pred             HHHHHHHHHHHHHHHhhcc--CCCCCC-C--------CC-CCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhh
Q 007604          106 AFFFYLMGMIVLALSVSLS--GLKPPP-C--------ND-INSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAA  173 (596)
Q Consensus       106 ~~~~~~i~~~~~~~~~~~~--~~~~~~-~--------~~-~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  173 (596)
                      -...+....++.++.-. |  ...++. .        .+ .--..-..-+.+....+++.-=+  -|.=...-..+.+..
T Consensus        98 ~~~~F~~fF~LFa~Vi~-P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aEL--WgslV~S~lFw~faN  174 (509)
T COG3202          98 ILGFFLGFFALFAFVIY-PYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAEL--WGSLVLSLLFWQFAN  174 (509)
T ss_pred             HHHHHHHHHHHHHHHHh-ccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            88888877777776631 1  011110 0        00 00001111222333333332111  111122224567788


Q ss_pred             ccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccc
Q 007604          174 DQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD  214 (596)
Q Consensus       174 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~  214 (596)
                      |+...++      -.+.++.++.+.|++..++..+..++.+
T Consensus       175 eitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         175 EITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888886      8899999999999999999888888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	596
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-04

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 38/183 (20%)
Query: 33  RACSFVVVYEVFERMAYHG--------ISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWV 84
           R   +++  E  ER +++G        + + L++ + ++L     K   +    G  ++ 
Sbjct: 12  RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIG--VYF 69
Query: 85  TPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLAL-SVSLSGLKPPPCNDINSQDCRKAS 143
            P+ G  +A+ + G+Y T +     Y +G   LA+   S+ G                  
Sbjct: 70  FPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG------------------ 111
Query: 144 TLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTL 203
                 F+  L+ +A+G+GG KP + +   DQFD+   K  A K   F+ + F+I FG+ 
Sbjct: 112 ------FYTGLFLIALGSGGIKPLVSSFMGDQFDQ-SNKSLAQKA--FDMFYFTINFGSF 162
Query: 204 LGN 206
             +
Sbjct: 163 FAS 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	596
2xut_A	524	Proton/peptide symporter family protein; transport	1e-146
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	5e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  431 bits (1111), Expect = e-146
 Identities = 94/557 (16%), Positives = 197/557 (35%), Gaps = 67/557 (12%)

Query: 33  RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGT------VKSANNVTNWGGTIWVTP 86
           R   +++  E  ER +++G+ + L  +L   L            + +   ++   ++  P
Sbjct: 12  RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71

Query: 87  IFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQ 146
           + G  +A+ + G+Y T +     Y +G   LA+                           
Sbjct: 72  LLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-----------------------EHS 108

Query: 147 LGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGN 206
           +  F+  L+ +A+G+GG KP + +   DQFD+            F+ + F+I FG+   +
Sbjct: 109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ---KAFDMFYFTINFGSFFAS 165

Query: 207 TVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRK 266
             +  +  + G A+ +G+P + + +A   F  G   Y H  P          VI +A+  
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT 225

Query: 267 RNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAV----------KTGATNPW 316
           + V    +   +  L     A      I +   +     A V                  
Sbjct: 226 K-VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERAR 284

Query: 317 ILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASL 376
                + V+    +L ++ +        ++  Q  + ++ Q   + +         PA +
Sbjct: 285 KSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK----PQWFEPAMM 340

Query: 377 TGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYR 436
                L +++ +   +        R        T L++MG G+ I  +  ++    +   
Sbjct: 341 QALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLMM 397

Query: 437 LSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY 496
                            L+IF  +  + L+   +  +    +EF Y QAP++MK    S+
Sbjct: 398 ------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSF 445

Query: 497 SMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFL 556
              ++ VGN        +V   T     +  +   ++V     +  FFA   +L  + F 
Sbjct: 446 WTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMF--FFAGFAILAAIVFA 500

Query: 557 VVAKFYVYKAEVSDSME 573
           + A+ Y  +     +  
Sbjct: 501 LYARSYQMQDHYRQATG 517

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 83.2 bits (206), Expect = 5e-17
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 33/230 (14%)

Query: 42  EVFERMAYHGISSNLVMYLTDKLHHG----TVKSANNVTNW-GGTIWVTPIFGAGVAEAY 96
           E++ER +Y+G+ + L+ Y+   +  G    T  +A ++       ++++   G  VA+  
Sbjct: 22  EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI 81

Query: 97  LGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYT 156
           +G            ++G IVLAL    S                          F ++  
Sbjct: 82  IGARPAVFWGGVLIMLGHIVLALPFGASA------------------------LFGSIIL 117

Query: 157 LAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDV 216
           + +GTG  KPN+ T+    +DE + +      + F+ ++F I  G  +   ++   Q+  
Sbjct: 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRD----AGFSIFVFGINLGAFIAPLIVGAAQEAA 173

Query: 217 GWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRK 266
           G+ + + L A+G+ I + ++  G                  + +   + K
Sbjct: 174 GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVK 223

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 6e-04
 Identities = 62/461 (13%), Positives = 115/461 (24%), Gaps = 166/461 (36%)

Query: 111 LMGMI-----VLALSVSLSGLKPPPCND-----INSQDCRKASTL--QLGTFFAALYTLA 158
           + G++      +AL V     K     D     +N ++C    T+   L      L    
Sbjct: 155 IDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEML----QKLLYQI 209

Query: 159 VGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGW 218
                ++ +  +    +        +A          +      LL   VL     +V  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHS----IQAELRRLLKSKPYEN---CLL---VL----LNV-Q 254

Query: 219 ALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQEL 278
                                     + K   + F    K+++   R + V   +     
Sbjct: 255 --------------------------NAKAW-NAFNLSCKILLTT-RFKQVTDFLSAATT 286

Query: 279 YELDLEYYAQRGKYRIGST--QNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPI 336
             + L+       + +  T  +      K          ++ C    +    ++L   P 
Sbjct: 287 THISLD------HHSMTLTPDEVKSLLLK----------YLDCRPQDLPR--EVLTTNPR 328

Query: 337 LVATFVPST--MLAQINTLFVKQGTTLDRAIGSSFK-IPPASLTGFVTLSMLVCVVLYDR 393
            ++    S    LA  +         L   I SS   + PA               ++DR
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-----------MFDR 377

Query: 394 CF-----VRITRR-----WTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDH 443
                    I        W                 VI   +MV+ +   +Y L      
Sbjct: 378 LSVFPPSAHIPTILLSLIWFD---------------VIKSDVMVVVNKLHKYSL------ 416

Query: 444 GIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGV 503
             VEK Q    TI I      L    +                   +S+   Y++     
Sbjct: 417 --VEK-QPKESTISIPSIYLELKVKLE-------------NEYALHRSIVDHYNI----- 455

Query: 504 GNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFF 544
                                K +  ++L   +LD Y+   
Sbjct: 456 --------------------PKTFDSDDLIPPYLDQYFYSH 476

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	596
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.95
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.88
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.41
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.4
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.31
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.2
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.97
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.87
2xut_A	524	Proton/peptide symporter family protein; transport	98.42

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=4.1e-31  Score=286.79  Aligned_cols=442  Identities=16%  Similarity=0.249  Sum_probs=296.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCChhhhhhHHHHHHHHHHHhhhhhHHHhhh-hcchhHHH
Q 007604           30 GGWRACSFVVVYEVFERMAYHGISSNLVMYLTDK-----LHHGTVKSANNVTNWGGTIWVTPIFGAGVAEA-YLGRYWTF  103 (596)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Grk~~~  103 (596)
                      +++|.++.+++..++..+.+|++..+++.|++++     +|.+..+.+++.+.+.++..++++++|+++|| + |||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~   88 (491)
T 4aps_A           10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAV   88 (491)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHH
Confidence            3457888899999999999999999999999988     99999999999999999999999999999999 8 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhh
Q 007604          104 VIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKE  183 (596)
Q Consensus       104 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  183 (596)
                      .++.++..++.++++++.                        +...++++|++.|+|.+...++..++++|++|+++   
T Consensus        89 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---  141 (491)
T 4aps_A           89 FWGGVLIMLGHIVLALPF------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD---  141 (491)
T ss_dssp             HHHHHHHHHHHHHHHSCC------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT---
T ss_pred             HHHHHHHHHHHHHHHHhh------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc---
Confidence            999999999998887653                        67788999999999999999999999999999875   


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceecc---CCCC-ChhHHHHHH
Q 007604          184 KAHKLSFFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHK---KPAG-SPFTRMAKV  259 (596)
Q Consensus       184 ~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~  259 (596)
                       ++|+.++++++...++|..++|.+++++.+..|||++|++.++..+++++.++...++...+   ++++ ...++..+.
T Consensus       142 -~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (491)
T 4aps_A          142 -RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL  220 (491)
T ss_dssp             -THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHH
T ss_pred             -ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHH
Confidence             24788899999999999999999999999889999999998876666665554433322111   1111 111111111


Q ss_pred             HHH--------------HHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhh
Q 007604          260 IVA--------------AIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVE  325 (596)
Q Consensus       260 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  325 (596)
                      ...              ......... .+..........   ....         .....         .++... ....
T Consensus       221 ~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~---------~~~~~---------~~~~~~-~~~~  277 (491)
T 4aps_A          221 LVKVSLAVAGFIAIIVVMNLVGWNSL-PAYINLLTIVAI---AIPV---------FYFAW---------MISSVK-VTST  277 (491)
T ss_dssp             HHHCCCCCHHHHHHHHHHHHHSSCCT-THHHHHHHHHHH---HHHH---------HHHHH---------HC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCccc-ccchhhhhHHHH---HHHH---------HHHHH---------Hhhccc-ccHH
Confidence            000              000110000 000000000000   0000         00000         000000 0011


Q ss_pred             hhhhHHhHHHHHHHhhhhhhhhhcccceeeeeecc-ccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccC
Q 007604          326 ETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTT-LDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTK  404 (596)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~  404 (596)
                      ++++......+......++..+.+....+..+... .+.+     ....+.......+..+++.++.+++.||++||.  
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~--  350 (491)
T 4aps_A          278 EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ--  350 (491)
T ss_dssp             ----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC--
Confidence            22333333344444455555555444432221111 1111     134566778888889999999999999888874  


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 007604          405 NPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQ  484 (596)
Q Consensus       405 ~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~  484 (596)
                          ......+.++.++.+++++..........+            ....+.+++++.+++.+++.+...+..++++.|.
T Consensus       351 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  414 (491)
T 4aps_A          351 ----PSSPTKFAVGLMFAGLSFLLMAIPGALYGT------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL  414 (491)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTTHHHHHHCCC------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             ----CCchHHHHHHHHHHHHHHHHHHHHHHhcCC------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence                244566778888888887666554311000            0124667778888999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 007604          485 APESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYV  563 (596)
Q Consensus       485 ~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  563 (596)
                      +|++.||+++|+.+....+|..+++.+.+.+.+                 .++...|+.++++.++..++.+++.++.+
T Consensus       415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (491)
T 4aps_A          415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQ  476 (491)
T ss_dssp             TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999887753                 12345677777777777776666655544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=3.7e-30  Score=281.73  Aligned_cols=472  Identities=20%  Similarity=0.321  Sum_probs=288.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHH
Q 007604           31 GWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLH------HGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFV  104 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~  104 (596)
                      ++|.++.+++..++..+++|++..+++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            34567778888999999999999999999999999      999999999999999999999999999999669999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhh
Q 007604          105 IAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEK  184 (596)
Q Consensus       105 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  184 (596)
                      ++.++..++.++++++.                       .+...++++|++.|++.+...+...+++.|++|+++    
T Consensus        90 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----  142 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFE-----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN----  142 (524)
T ss_dssp             HHHHHHHHHHHHHHHTS-----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT----
T ss_pred             HHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc----
Confidence            99999999988887752                       156778899999999999999999999999999886    


Q ss_pred             hhhhh---hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHH
Q 007604          185 AHKLS---FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIV  261 (596)
Q Consensus       185 ~~r~~---~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (596)
                        |++   .+++++...++|.+++|.+++++.+..||+++|++.++..+++.+.++..+++.+++++++++..+..+.+.
T Consensus       143 --r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (524)
T 2xut_A          143 --KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR  220 (524)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHH
Confidence              654   455589999999999999999998888999999988877666666555544443333332222222222222


Q ss_pred             HHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccC-----------------Ccchhh--hhhhhhhcCCCCCcccccch
Q 007604          262 AAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGS-----------------TQNLRF--FNKAAVKTGATNPWILCSVS  322 (596)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~~~~~~~~~  322 (596)
                      ...++++... ........................                 .+...+  ++..+.         .....
T Consensus       221 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~  290 (524)
T 2xut_A          221 SALLTKVEGK-GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARK---------SHPDA  290 (524)
T ss_dssp             ------CTTH-HHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCC---------SCCSS
T ss_pred             HHHhhhhccc-CccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhc---------cccHh
Confidence            2222211100 000000000000000000000000                 000000  110000         00111


Q ss_pred             hhhhhhhHHhHHHHHHHhhhhhhhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcc
Q 007604          323 QVEETTQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRW  402 (596)
Q Consensus       323 ~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~  402 (596)
                      +.+++|..+..+........++..+.+..+.+..+....+...   + .+.+.+...+.+..++..++.+++..+..+|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (524)
T 2xut_A          291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERM  366 (524)
T ss_dssp             SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc
Confidence            2233444444444444455555555555554433322222110   0 23455566677788888888888653433443


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007604          403 TKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFY  482 (596)
Q Consensus       403 ~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~  482 (596)
                      .++   .++.+.+.+|+++.+++++...+.+....            .....+.+++++.+++.+++++...+..++++.
T Consensus       367 ~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  431 (524)
T 2xut_A          367 GVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD------------GGSALSIFWQILPYALLTFGEVLVSATGLEFAY  431 (524)
T ss_dssp             -------CCHHHHHTHHHHHHHHHHTTTTTTTTTT------------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred             CCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc------------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222   34556677888888887766654321100            001245667778889999999999999999999


Q ss_pred             hhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCcccc-CCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007604          483 DQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILN-NLNVCHLDYYYAFFAILNVLNFVFFLVVAKF  561 (596)
Q Consensus       483 ~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  561 (596)
                      |.+|++.||+++|++++...+|+.+++.+.+.+.+.++    .+|..+ +.+.  ....|++.+++.+++.++++++.++
T Consensus       432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  505 (524)
T 2xut_A          432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARS  505 (524)
T ss_dssp             HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998864321    123211 1111  1223777777777777776666665


Q ss_pred             ccccc
Q 007604          562 YVYKA  566 (596)
Q Consensus       562 ~~~~~  566 (596)
                      +++++
T Consensus       506 ~~~~~  510 (524)
T 2xut_A          506 YQMQD  510 (524)
T ss_dssp             -----
T ss_pred             hccch
Confidence            54433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=1.2e-27  Score=255.83  Aligned_cols=398  Identities=9%  Similarity=0.022  Sum_probs=258.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      ++.++.+++..++..+..+.....++.+ .+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            4455556666666666655555666554 4567 9999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHH----HhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhh
Q 007604          112 MGMIVLAL----SVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHK  187 (596)
Q Consensus       112 i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  187 (596)
                      ++.+++++    +.                        +...++++|++.|++.+...++..+++.|.+|+++      |
T Consensus       104 ~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r  153 (451)
T 1pw4_A          104 AVMLFMGFVPWATS------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R  153 (451)
T ss_dssp             HHHHHHHHCHHHHS------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred             HHHHHHHhhhhccc------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence            99999988    53                        66788899999999999999999999999999875      9


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHh
Q 007604          188 LSFFNWWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRK  266 (596)
Q Consensus       188 ~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (596)
                      ++++++.+...++|.+++|.+++++.+..| ||++|++.++..++..+..+...++.+++....+. +            
T Consensus       154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------  220 (451)
T 1pw4_A          154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------  220 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h------------
Confidence            999999999999999999999999888888 99999998876655444433333322111100000 0            


Q ss_pred             cCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHH-HHHHhhhhhh
Q 007604          267 RNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIP-ILVATFVPST  345 (596)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~-~~~~~~~~~~  345 (596)
                         +...+.    . .+.  .++...+...++   .                 ...+..+.+.+..... .++....++.
T Consensus       221 ---~~~~~~----~-~~~--~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (451)
T 1pw4_A          221 ---EYKNDY----P-DDY--NEKAEQELTAKQ---I-----------------FMQYVLPNKLLWYIAIANVFVYLLRYG  270 (451)
T ss_dssp             ---TTCCC--------------------CCTH---H-----------------HHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hhcccc----c-ccc--hhhhhccccccc---c-----------------hHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence               000000    0 000  000000000000   0                 0000011122222211 1122222222


Q ss_pred             hhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHh--hhcccCCCCCCChhHHHHHHHHHHH
Q 007604          346 MLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRI--TRRWTKNPRGITLLQRMGIGLVIHI  423 (596)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l--~~r~~~~~~~~~~~~~l~~g~~l~~  423 (596)
                      .....+.+. .+..+.+       ....+.......++.+++.++..++.||+  ++|           +.+.++.++..
T Consensus       271 ~~~~~~~~~-~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~  331 (451)
T 1pw4_A          271 ILDWSPTYL-KEVKHFA-------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHB-TTBSCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHhcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHH
Confidence            222222221 1101111       11223445566677777788888877776  444           23444444444


Q ss_pred             -HHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHh
Q 007604          424 -IIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLG  502 (596)
Q Consensus       424 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~  502 (596)
                       ++++...+..                   ..+.+.++...++.|++.+...+..+.+..|.+|++.||+++|+.+....
T Consensus       332 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  392 (451)
T 1pw4_A          332 TIATIVYWMNP-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY  392 (451)
T ss_dssp             HHHHHHTTSCC-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence             4444433321                   12445566667888888888888889999999999999999999999999


Q ss_pred             H-HHHHHhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 007604          503 V-GNFLSSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVA  559 (596)
Q Consensus       503 i-g~~lg~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~  559 (596)
                      + |..+++.+.+.+.+..                ++...|++.+++.+++.++.+...
T Consensus       393 ~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          393 LGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            9 9999999999887522                345677877777777766665543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=2e-27  Score=257.64  Aligned_cols=401  Identities=13%  Similarity=0.087  Sum_probs=229.9

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchh
Q 007604           68 TVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQL  147 (596)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (596)
                      ..+.+++.+++.++..+|++++|+++||+ |||++++++.+++.++.++++++.........      ...-....-.+.
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~------~~~~~~~~a~~~  126 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP------DNTVPVYLAGYV  126 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS------SSSCCGGGGGCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc------hhHHHHHHhhhH
Confidence            45678899999999999999999999998 99999999999999999998854210000000      000000011378


Q ss_pred             HHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccc--------cccch
Q 007604          148 GTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYIQD--------DVGWA  219 (596)
Q Consensus       148 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~--------~~g~~  219 (596)
                      ..++++|+++|+|.|+..+..+++++|..|++.      |+...++.+.+..+|..+++.++..+..        ..+||
T Consensus       127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (491)
T 4gc0_A          127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR  200 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence            899999999999999999999999999999986      9999999999999999988877655432        23467


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCc-
Q 007604          220 LGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQ-  298 (596)
Q Consensus       220 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  298 (596)
                      ..+.+..+..++.++..+.. |+                               +|+++...++.+++.+...+....+ 
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~-pe-------------------------------Sp~~L~~~~~~~~a~~~l~~~~~~~~  248 (491)
T 4gc0_A          201 YMFASECIPALLFLMLLYTV-PE-------------------------------SPRWLMSRGKQEQAEGILRKIMGNTL  248 (491)
T ss_dssp             HHHHTTHHHHHHHHHHGGGS-CC-------------------------------CHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhhhhhhhhcC-CC-------------------------------ChHHHHHcCchhHHHHhHHHhcCCch
Confidence            66665555444433332221 11                               1111111111111100000000000 


Q ss_pred             -------chhhhhhhhhhcCCCCCcccccchhhhhhhhHHh-HHHHHHHhhhhhhhhhcccceeeeeeccccccCCCccc
Q 007604          299 -------NLRFFNKAAVKTGATNPWILCSVSQVEETTQMLA-MIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFK  370 (596)
Q Consensus       299 -------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  370 (596)
                             .....+..+...         ........+.... .....+...........+.+....       ..+ ...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~  311 (491)
T 4gc0_A          249 ATQAVQEIKHSLDHGRKTG---------GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-------TLG-AST  311 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHT---------THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSS-CCH
T ss_pred             hHHHHHHHHHHHHhhhhhh---------hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-------hcC-CCc
Confidence                   000000000000         0000001111111 111111111100111111111111       000 001


Q ss_pred             ccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCC
Q 007604          371 IPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQ  450 (596)
Q Consensus       371 ~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (596)
                      ...........+..+++..+...+.||++||           +.+..+...++++++..+.....               
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~~---------------  365 (491)
T 4gc0_A          312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT---------------  365 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHhc---------------
Confidence            1112223444566667777778888888888           33555666666666555433210               


Q ss_pred             cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccccccCCCCcccc
Q 007604          451 QVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDITKRHGHKGWILN  530 (596)
Q Consensus       451 ~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~~  530 (596)
                       ...+...++...++.........|..+.+..|.+|++.|++++|+.+..+++++++++.+.+.+....       |...
T Consensus       366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~  437 (491)
T 4gc0_A          366 -QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLVA  437 (491)
T ss_dssp             -TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHHH
T ss_pred             -ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh
Confidence             01122222222233333334455778899999999999999999999999999999999988775321       1100


Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 007604          531 NLNVCHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAE  567 (596)
Q Consensus       531 ~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~  567 (596)
                         ..+....|++++++++++.++.+++.+|+++|+.
T Consensus       438 ---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL  471 (491)
T 4gc0_A          438 ---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL  471 (491)
T ss_dssp             ---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred             ---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence               1122356888899999999988888899888876

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.95  E-value=2.1e-25  Score=237.70  Aligned_cols=356  Identities=10%  Similarity=0.052  Sum_probs=238.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHH
Q 007604           29 RGGWRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFF  108 (596)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  108 (596)
                      ++.++.+..+.+..++..+........++ ++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            34455566666666666666554545554 57779999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHH---HHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhh
Q 007604          109 FYLMGMIVL---ALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKA  185 (596)
Q Consensus       109 ~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  185 (596)
                      +.+++.+++   ..+.                        +.+.++++|++.|++.+...+...+++.|.+|+++     
T Consensus       100 ~~~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~-----  150 (438)
T 3o7q_A          100 LYALGAALFWPAAEIM------------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS-----  150 (438)
T ss_dssp             HHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT-----
T ss_pred             HHHHHHHHHHhccccc------------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh-----
Confidence            999999888   4432                        78889999999999999999999999999999986     


Q ss_pred             hhhhhHHHHHHHHHHHHHHhhhhhhhcc-cccc-------------------------chhhhHHHHHHHHHHHHHHHhc
Q 007604          186 HKLSFFNWWMFSIFFGTLLGNTVLVYIQ-DDVG-------------------------WALGYGLPALGLAIAIAIFLAG  239 (596)
Q Consensus       186 ~r~~~~~~~~~~~~ig~~l~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~  239 (596)
                       |+++.++.+...++|..++|.+++++. +..+                         ||+.|++.++..++..+.++..
T Consensus       151 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  229 (438)
T 3o7q_A          151 -GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT  229 (438)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             999999999999999999999999887 5544                         8999977665544444333332


Q ss_pred             C-CceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCccc
Q 007604          240 T-PFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWIL  318 (596)
Q Consensus       240 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (596)
                      + ++.++++++++...                                          .....+                
T Consensus       230 ~~p~~~~~~~~~~~~~------------------------------------------~~~~~~----------------  251 (438)
T 3o7q_A          230 KFPALQSDNHSDAKQG------------------------------------------SFSASL----------------  251 (438)
T ss_dssp             CCCCCTTTCCCCSSTT------------------------------------------SHHHHH----------------
T ss_pred             cCCccccccccccccc------------------------------------------chhhhH----------------
Confidence            1 11111100000000                                          000000                


Q ss_pred             ccchhhhhhhhHHhH-HHHHHHhhhhhhhhhcccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHH
Q 007604          319 CSVSQVEETTQMLAM-IPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVR  397 (596)
Q Consensus       319 ~~~~~v~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~  397 (596)
                         .+..+.+.+... +..++............+.++..+..+.+       ....+.......+..+++.++..++.||
T Consensus       252 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~r  321 (438)
T 3o7q_A          252 ---SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT-------AGFAANYLTGTMVCFFIGRFTGTWLISR  321 (438)
T ss_dssp             ---HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               000011111111 11112222222222222222121111111       1122344555666777777888887777


Q ss_pred             hhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhh
Q 007604          398 ITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAK  477 (596)
Q Consensus       398 l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~  477 (596)
                      ++||           +.+.++.++.+++++...+.                     .+. +.+...++.+++.+...|..
T Consensus       322 ~~~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~g~~~~~~~~~~  368 (438)
T 3o7q_A          322 FAPH-----------KVLAAYALIAMALCLISAFA---------------------GGH-VGLIALTLCSAFMSIQYPTI  368 (438)
T ss_dssp             SCHH-----------HHHHHHHHHHHHHHHHHHHC---------------------CHH-HHHHHHHHHHHHHTTHHHHH
T ss_pred             hcch-----------HHHHHHHHHHHHHHHHHHHc---------------------CCc-HHHHHHHHHHHHHHHHHHHH
Confidence            7666           44666666666666555442                     122 23444578888888899999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHHHhhhhccc
Q 007604          478 IEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDIT  519 (596)
Q Consensus       478 ~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~i~~~~  519 (596)
                      +++..|..|++ ++++.++.. .+.+|..+++.+.+.+.+..
T Consensus       369 ~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             HHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            99999999977 999999887 67799999999999987643

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=1.7e-23  Score=218.64  Aligned_cols=345  Identities=11%  Similarity=0.061  Sum_probs=227.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHH
Q 007604           36 SFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMI  115 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~  115 (596)
                      +.+++..++..+........++. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            34455556666666655666665 4568999999999999999999999999999999998 999999999999999999


Q ss_pred             HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 007604          116 VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWM  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  195 (596)
                      +...+.                        +...+++.|++.|++.+...+...+++.|.+|+++      |++++++.+
T Consensus        81 ~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  130 (375)
T 2gfp_A           81 VAVTTS------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLN  130 (375)
T ss_dssp             HHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHH
T ss_pred             HHHHhc------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHH
Confidence            988875                        78889999999999999999999999999999886      999999999


Q ss_pred             HHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCc
Q 007604          196 FSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDP  275 (596)
Q Consensus       196 ~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (596)
                      ...++|..++|.+++++.+..|||+.|++.++..++..+......|+.++++++++                        
T Consensus       131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  186 (375)
T 2gfp_A          131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT------------------------  186 (375)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC------------------------
T ss_pred             HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc------------------------
Confidence            99999999999999999988899999987776554443322222221111000000                        


Q ss_pred             hhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHH-HHHhhhhhhhhhccccee
Q 007604          276 QELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPI-LVATFVPSTMLAQINTLF  354 (596)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  354 (596)
                                         +..+                .+     .+..+.|.+...... .+............ +.+
T Consensus       187 -------------------~~~~----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  225 (375)
T 2gfp_A          187 -------------------RLLT----------------SY-----KTLFGNSGFNCYLLMLIGGLAGIAAFEACS-GVL  225 (375)
T ss_dssp             -------------------CTTT----------------CS-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SCS
T ss_pred             -------------------cHHH----------------HH-----HHHhcCcchHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                               0000                00     011111222222221 12122222222211 222


Q ss_pred             eeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHH-HHHHHH--HHHH
Q 007604          355 VKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVI-HIIIMV--IASF  431 (596)
Q Consensus       355 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l-~~~~~~--~~~~  431 (596)
                      ..+..+.+       ....+.......++.+++.++.+++.||..+             ++..+..+ ...+..  ....
T Consensus       226 ~~~~~g~~-------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-------------~~~~~~~~~~~~~~~~~~~~~  285 (375)
T 2gfp_A          226 MGAVLGLS-------SMTVSILFILPIPAAFFGAWFAGRPNKRFST-------------LMWQSVICCLLAGLLMWIPDW  285 (375)
T ss_dssp             SHHHHHHH-------HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-------------HHHHHHHHHHHTSSSSSHHHH
T ss_pred             HHHHhCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhh
Confidence            11111111       1112333444555556666555554333322             23333333 222221  1111


Q ss_pred             HhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhHHHHHHhHH
Q 007604          432 TERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFL  511 (596)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~  511 (596)
                      ..                   ..+.+.++...++.+++.+...+....+..|..| +.||+++|+.+..+.+|..+++.+
T Consensus       286 ~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~  345 (375)
T 2gfp_A          286 FG-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL  345 (375)
T ss_dssp             HH-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred             hc-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence            10                   1244556667788899999999999999999999 899999999999999999999998


Q ss_pred             Hhhhhc
Q 007604          512 LSTVSD  517 (596)
Q Consensus       512 ~~~i~~  517 (596)
                      .+.+.+
T Consensus       346 ~g~l~~  351 (375)
T 2gfp_A          346 SAMLPQ  351 (375)
T ss_dssp             CTHHHH
T ss_pred             HHHHhc
Confidence            887753

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.88  E-value=4.4e-23  Score=219.24  Aligned_cols=390  Identities=8%  Similarity=-0.027  Sum_probs=223.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |..+.+....++..+.+..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ |||++++++..+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            4566666666666666666778899999999999999999999999999999999999999998 999999988877654


Q ss_pred             HHHHH---HHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          113 GMIVL---ALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       113 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      +....   ..+..                       ....+..++++.+++.+...+...+...+..++..    ++++.
T Consensus        86 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~  138 (417)
T 2cfq_A           86 MFAPFFIFIFGPL-----------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNF  138 (417)
T ss_dssp             CHHHHHHHTHHHH-----------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTC
T ss_pred             HHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhccc
Confidence            32211   11110                       00012234445455444444444444444433221    13666


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCC
Q 007604          190 FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNV  269 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (596)
                      .++..+...++|..++|.+++++.+ .+|+..|++.++..++..+..+..+++.+   ++.+.                 
T Consensus       139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------------  197 (417)
T 2cfq_A          139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAP---SSATV-----------------  197 (417)
T ss_dssp             CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCS---CSSCS-----------------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccc---ccccc-----------------
Confidence            6777777778999999999998876 68999998766543333222211111100   00000                 


Q ss_pred             CCCCCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhh-h
Q 007604          270 PLPIDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTML-A  348 (596)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~-~  348 (596)
                        ++ ..           +...   + +...+  +..                +..+.+.+.......+.....+..+ +
T Consensus       198 --~~-~~-----------~~~~---~-~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (417)
T 2cfq_A          198 --AN-AV-----------GANH---S-AFSLK--LAL----------------ELFRQPKLWFLSLYVIGVSCTYDVFDQ  241 (417)
T ss_dssp             --SS-SS-----------SSCC---C-CCCHH--HHH----------------HHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cc-cc-----------cccc---c-cccHH--HHH----------------HHhcCCchhhHHHHHHHHHHHHHHHHH
Confidence              00 00           0000   0 00000  000                0001112222111111111112222 2


Q ss_pred             cccceeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 007604          349 QINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVI  428 (596)
Q Consensus       349 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~  428 (596)
                      +.+.++..+ .. ....+   ....+....++.+..+++..+..++.||++||           +.+.++.++.+++++.
T Consensus       242 ~~~~~~~~~-~~-~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~  305 (417)
T 2cfq_A          242 QFANFFTSF-FA-TGEQG---TRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIG  305 (417)
T ss_dssp             HHHHHHHHT-SS-SHHHH---THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-Hh-ccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHH
Confidence            222222111 00 00000   00012233444555666677788888777776           3355666666666555


Q ss_pred             HHHHhhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHH-HHHHHhHHHHH
Q 007604          429 ASFTERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY-SMTTLGVGNFL  507 (596)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~~l  507 (596)
                      ..+.                     .+.+.+++..++.+++.....+..+.++.|.+|++.||++.++ ++..+++|+.+
T Consensus       306 ~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~  364 (417)
T 2cfq_A          306 SSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF  364 (417)
T ss_dssp             HTTC---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             HHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH
Confidence            4432                     1334455555666777767777778999999999999999999 58888999999


Q ss_pred             HhHHHhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 007604          508 SSFLLSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAK  560 (596)
Q Consensus       508 g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~  560 (596)
                      ++.+.+.+.+..                ++...|.+.+++.+++.++.+...+
T Consensus       365 gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          365 MSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             hhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999876421                3455677777777777665554433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.41  E-value=1.7e-12  Score=138.14  Aligned_cols=179  Identities=13%  Similarity=0.101  Sum_probs=148.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhc-chhHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYL-GRYWTFVIAFFFY  110 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grk~~~~~~~~~~  110 (596)
                      .|.++..++..++..+.++++..+++.|+++.+|.++.+.+++.+...++..++.+++|+++||+. |||+.+.++..+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  330 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            356777888888888888999999999999889999999999999999999999999999999942 8888887776665


Q ss_pred             H-HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          111 L-MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       111 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      . ++.+++....                      +.+...+.+..++.|++.+...+...++..|.+|+++      |++
T Consensus       331 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  382 (451)
T 1pw4_A          331 VTIATIVYWMNP----------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT  382 (451)
T ss_dssp             HHHHHHHTTSCC----------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHH
T ss_pred             HHHHHHHHHHhc----------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhh
Confidence            5 4444443221                      0145566677778899888888888999999999886      999


Q ss_pred             hHHHHHHHHHH-HHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHh
Q 007604          190 FFNWWMFSIFF-GTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLA  238 (596)
Q Consensus       190 ~~~~~~~~~~i-g~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  238 (596)
                      +.++.+...++ |..++|.+.|++.+..||+..|++.++..+++.+..+.
T Consensus       383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 99999999999999899999999888776666555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.40  E-value=3.2e-12  Score=135.45  Aligned_cols=168  Identities=14%  Similarity=0.086  Sum_probs=136.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMY-LTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      |.++...+..++.....+++..+++.| +++.+|.+..+.+...+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            456666777777777788888999999 8888899999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      ++.++.....                        +... .+..++.|++.+...|...++..|.+|++       ++.+.
T Consensus       337 ~~~~~~~~~~------------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~  384 (438)
T 3o7q_A          337 ALCLISAFAG------------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGS  384 (438)
T ss_dssp             HHHHHHHHCC------------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHH
T ss_pred             HHHHHHHHcC------------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchh
Confidence            8877766542                        3333 33457788999999999999999999854       55566


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccccc-chhhhHHHHHHHHHHHH
Q 007604          192 NWWMFSIFFGTLLGNTVLVYIQDDVG-WALGYGLPALGLAIAIA  234 (596)
Q Consensus       192 ~~~~~~~~ig~~l~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~  234 (596)
                      ++.. ...+|..++|.+.|++.+..| ++..|++.+++.++..+
T Consensus       385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            6555 557999999999999999888 99999887655444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.31  E-value=9.1e-12  Score=131.78  Aligned_cols=177  Identities=10%  Similarity=-0.005  Sum_probs=127.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---ChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHH---GTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF  109 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  109 (596)
                      |..+...+..++....++....+++.|+.+.++.   +..+.+...+...++..++.+++|+++||+ |||+++.++..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~  298 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence            3444444443444444455556788888766653   234456677777778889999999999998 999999988877


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      .+++.++.++..                        +...+.+..++.+++.+...+....+.+|.+|++.      |++
T Consensus       299 ~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~  348 (417)
T 2cfq_A          299 MSVRIIGSSFAT------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SAT  348 (417)
T ss_dssp             HHHHHHHHTTCC------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHH
T ss_pred             HHHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHH
Confidence            777655554321                        44455556666677766666777889999999875      999


Q ss_pred             hHHH-HHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcC
Q 007604          190 FFNW-WMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGT  240 (596)
Q Consensus       190 ~~~~-~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  240 (596)
                      +.++ ++....+|+.++|.++|++.+..|++..|.+.++..+++.+..+...
T Consensus       349 ~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  400 (417)
T 2cfq_A          349 IYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            9888 47788899999999999998888888888887776666665544433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.20  E-value=8.3e-11  Score=126.72  Aligned_cols=185  Identities=11%  Similarity=0.056  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHH-----HHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFV-----IAFFF  109 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~-----~~~~~  109 (596)
                      .+.+.+..++....+.....+++.|..+.++.+..+.+...+...++..++.++.|++.||+ |||+...     ++.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            44555555566666667778889999988898888889999999999999999999999998 9986654     66666


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          110 YLMGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      ..++.+++........               ...+.+...+.+..++.|++.+...+...++..|.+|++.      |++
T Consensus       364 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~  422 (491)
T 4aps_A          364 AGLSFLLMAIPGALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQ  422 (491)
T ss_dssp             HHHHHTTTHHHHHHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSS
T ss_pred             HHHHHHHHHHHHHhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHH
Confidence            6666665555421100               0011245566677888999999999999999999999997      999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 007604          190 FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPF  242 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  242 (596)
                      +.++.+...++|..+++.+.+++.+ .++...|++.++..+++.+..+...++
T Consensus       423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888875 466777777666655555555554444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.97  E-value=2.3e-08  Score=107.34  Aligned_cols=183  Identities=10%  Similarity=0.030  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHH
Q 007604           35 CSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGM  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~  114 (596)
                      ........++..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence            33333444444443333334444556667888888888777888899999999999999998 99999999988888877


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 007604          115 IVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  194 (596)
                      +.++......                  .+..........+..+++ ....|..+.+.+|.+|.+.      |+++.++.
T Consensus       357 ~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~  411 (491)
T 4gc0_A          357 FSLGTAFYTQ------------------APGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIA  411 (491)
T ss_dssp             HHHHHHHHTT------------------CCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHH
T ss_pred             HHHHHHHhcc------------------cchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHH
Confidence            7665543211                  001122222222222333 2345777899999999997      99999999


Q ss_pred             HHHHHHHHHHhhhhhhhccc------cccchhhhHHHHHHHHHHHHHHHhcCCce
Q 007604          195 MFSIFFGTLLGNTVLVYIQD------DVGWALGYGLPALGLAIAIAIFLAGTPFY  243 (596)
Q Consensus       195 ~~~~~ig~~l~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  243 (596)
                      +...++|+.+++.+.+.+.+      ..++...|++.++..+++.+..++..|+.
T Consensus       412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            99999999988877766543      23455677777666666665555555544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.87  E-value=6.2e-10  Score=115.39  Aligned_cols=162  Identities=9%  Similarity=-0.012  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHH-HH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFF-YL  111 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~-~~  111 (596)
                      |.++...+..++.....++...+++.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4566677777777888888888999999988999999999999999999999999999999998 883  2333322 22


Q ss_pred             HHHH--HHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhh
Q 007604          112 MGMI--VLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLS  189 (596)
Q Consensus       112 i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  189 (596)
                      .+..  ......                      +.+.+.+++..++.|++.+...+...++..|.+| ++      |++
T Consensus       276 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~  326 (375)
T 2gfp_A          276 AGLLMWIPDWFG----------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGT  326 (375)
T ss_dssp             TSSSSSHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHH
T ss_pred             HHHHHHHHhhhc----------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cch
Confidence            2222  111110                      0145556677788899999999999999999998 43      999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhccccccchhhhHHHH
Q 007604          190 FFNWWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPA  226 (596)
Q Consensus       190 ~~~~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~  226 (596)
                      +.++.+...++|..++|.+.+.+.+..+|+..+.+.+
T Consensus       327 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          327 AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            9999999999999999999999887777877776543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.42  E-value=1.3e-06  Score=94.54  Aligned_cols=137  Identities=15%  Similarity=0.114  Sum_probs=101.1

Q ss_pred             cccccchhHHHHHHHHHHhHHHHHh-hhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCCcc
Q 007604          374 ASLTGFVTLSMLVCVVLYDRCFVRI-TRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV  452 (596)
Q Consensus       374 ~~~~~~~~~~~~i~~~l~~~~~~~l-~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (596)
                      +.+.+...++.+++.++.+++.||+ +||           +.+.++.++.+++.+...+..                   
T Consensus        57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------  106 (524)
T 2xut_A           57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIFE-------------------  106 (524)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHTS-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence            4455666777778888888888877 766           446777777777776666531                   


Q ss_pred             eehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHH---HHHHHhHHHHHHhHHHhhhhccccccCCCCccc
Q 007604          453 PLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY---SMTTLGVGNFLSSFLLSTVSDITKRHGHKGWIL  529 (596)
Q Consensus       453 ~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~ig~~lg~~~~~~i~~~~~~~~~~~w~~  529 (596)
                       .+.+.+++..++.|++.+...+...+++.|.+|++.|++..+.   ++....+|..+++.+.+.+.+.           
T Consensus       107 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----------  174 (524)
T 2xut_A          107 -HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-----------  174 (524)
T ss_dssp             -SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-----------
T ss_pred             -ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------
Confidence             1556677778899999999999999999999999999877666   8888899999999888777531           


Q ss_pred             cCCcccchhHHHHHHHHHHHHHHHHHHH
Q 007604          530 NNLNVCHLDYYYAFFAILNVLNFVFFLV  557 (596)
Q Consensus       530 ~~~~~~~~~~~f~~~~~~~~v~~~~~~~  557 (596)
                           .++.+.|++.+++.++..++++.
T Consensus       175 -----~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          175 -----FGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             -----SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -----ccHHHHHHHHHHHHHHHHHHHHH
Confidence                 12456677766665555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	596
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.92
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.36
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.29

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.1e-27  Score=249.10  Aligned_cols=387  Identities=9%  Similarity=-0.010  Sum_probs=236.6

Q ss_pred             HHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 007604           53 SSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCN  132 (596)
Q Consensus        53 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  132 (596)
                      .+.+..+++ ++|++.+|.|++.+++.++..++.+++|+++||+ |||+++.++.++..++.++++++....        
T Consensus        44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------  113 (447)
T d1pw4a_          44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT--------  113 (447)
T ss_dssp             HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred             HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh--------
Confidence            345556776 5899999999999999999999999999999998 999999999999999988887753211        


Q ss_pred             CCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhc
Q 007604          133 DINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLLGNTVLVYI  212 (596)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l  212 (596)
                                  .+...+++.|++.|++.|...++..+++.|.+|+++      |++++++.+.+.++|..++|.+++.+
T Consensus       114 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_         114 ------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             ------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             ------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhH
Confidence                        156678899999999999999999999999999886      99999999999999999999888876


Q ss_pred             ccc-ccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhHHhhhcCc
Q 007604          213 QDD-VGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLPIDPQELYELDLEYYAQRGK  291 (596)
Q Consensus       213 ~~~-~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (596)
                      ... .+||+.|++.++..++..+..+...++.+++......                    ++.......+.   .+...
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~---~~~~~  232 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI--------------------EEYKNDYPDDY---NEKAE  232 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--------------------TTTCCC-------------
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh--------------------hhhhhhcccch---hhccc
Confidence            554 4799999888766554444444433332221111000                    00000000000   00000


Q ss_pred             ccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHH-HHHHHhhhhhhhhhcccceeeeeeccccccCCCccc
Q 007604          292 YRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMI-PILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFK  370 (596)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  370 (596)
                      .+...++    .                ......+.+.+.... ..++.....+....+.+.+... ....+       .
T Consensus       233 ~~~~~~~----~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~  284 (447)
T d1pw4a_         233 QELTAKQ----I----------------FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFA-------L  284 (447)
T ss_dssp             ---CCTH----H----------------HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCC-------H
T ss_pred             cccchhh----H----------------HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhccc-ccccc-------c
Confidence            0000000    0                000001112221111 1112222222222222222111 11111       1


Q ss_pred             ccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCC
Q 007604          371 IPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQ  450 (596)
Q Consensus       371 ~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (596)
                      ...+.......+..+++..+.+++.||..|+.        ..........+..++.......                  
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~------------------  338 (447)
T d1pw4a_         285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--------RGATGVFFMTLVTIATIVYWMN------------------  338 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHHTTSC------------------
T ss_pred             chhhhhhhcchhhhhhhhhhhhhhhhhccccc--------cccccchhHHHHHHHHHHHHhc------------------
Confidence            12334445566667777778888777776662        1111222222222222211111                  


Q ss_pred             cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHHHHHHhH-HHHHHhHHHhhhhccccccCCCCccc
Q 007604          451 QVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGV-GNFLSSFLLSTVSDITKRHGHKGWIL  529 (596)
Q Consensus       451 ~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~i-g~~lg~~~~~~i~~~~~~~~~~~w~~  529 (596)
                       ...+.+..+...++.|++.....+....+..|.+|++.||+++|+.+....+ |..+++.+.+.+.+..          
T Consensus       339 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~----------  407 (447)
T d1pw4a_         339 -PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------  407 (447)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------
T ss_pred             -ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence             0234555666677888888888888899999999999999999999888777 5566788888876532          


Q ss_pred             cCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007604          530 NNLNVCHLDYYYAFFAILNVLNFVFFLVVAKF  561 (596)
Q Consensus       530 ~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  561 (596)
                            ++...|+++++..+++.++.+.+.++
T Consensus       408 ------g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         408 ------GWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             ------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------ChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  23456666666666666655555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=8.1e-24  Score=218.32  Aligned_cols=395  Identities=9%  Similarity=-0.042  Sum_probs=234.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHH
Q 007604           33 RACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLM  112 (596)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i  112 (596)
                      |++|.+.+..++..+......++++.|+++++|+|+++.|++.+++.++..+++++.|+++||+ ||||+++++..+..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            6788888888888888777888999999999999999999999999999999999999999999 999999999988888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHH
Q 007604          113 GMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFN  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  192 (596)
                      +.++.......+                    ......++.+.+.+.+.+...+.......+..+++.    .++....+
T Consensus        86 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  141 (417)
T d1pv7a_          86 MFAPFFIFIFGP--------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFG  141 (417)
T ss_dssp             THHHHHHHTHHH--------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSCCHH
T ss_pred             HHHHHHHhhhhh--------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHHHHH
Confidence            887777653110                    011112333334444444433333333333333221    23566667


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCChhHHHHHHHHHHHHhcCCCCC
Q 007604          193 WWMFSIFFGTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIFLAGTPFYRHKKPAGSPFTRMAKVIVAAIRKRNVPLP  272 (596)
Q Consensus       193 ~~~~~~~ig~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (596)
                      ........+..++|.+++.+.+. +|+..+........+..+..+...++.+..+++++...             ...  
T Consensus       142 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~--  205 (417)
T d1pv7a_         142 RARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-------------ANH--  205 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH-------------SCC--
T ss_pred             HHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh-------------hhc--
Confidence            77778888889999888888764 45555555544433333333333332222111111000             000  


Q ss_pred             CCchhhhhhhhHHhhhcCcccccCCcchhhhhhhhhhcCCCCCcccccchhhhhhhhHHhHHHHHHHhhhhhhhhhcccc
Q 007604          273 IDPQELYELDLEYYAQRGKYRIGSTQNLRFFNKAAVKTGATNPWILCSVSQVEETTQMLAMIPILVATFVPSTMLAQINT  352 (596)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~  352 (596)
                                             ......  +..               ....+++........................
T Consensus       206 -----------------------~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (417)
T d1pv7a_         206 -----------------------SAFSLK--LAL---------------ELFRQPKLWFLSLYVIGVSCTYDVFDQQFAN  245 (417)
T ss_dssp             -----------------------CCCCHH--HHH---------------HHTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------cccccc--ccc---------------cccccccccchhhhhHHHHHHHHhhhccccc
Confidence                                   000000  000               0000000000011111111111111111111


Q ss_pred             eeeeeeccccccCCCcccccccccccchhHHHHHHHHHHhHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007604          353 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRCFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFT  432 (596)
Q Consensus       353 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~l~~g~~l~~~~~~~~~~~  432 (596)
                      .......  +...+   ............+...++..+.+++.||.++|           +.+.++.++.+++.+...+.
T Consensus       246 ~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~  309 (417)
T d1pv7a_         246 FFTSFFA--TGEQG---TRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA  309 (417)
T ss_dssp             HHTTSSS--CHHHH---HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccccc--ccccc---hhhhcccccccccccccchhhhhhhhcccccc-----------cchhhhHHHHHHhhhccccc
Confidence            1000000  00000   01112223334445555555556655555444           55777777777777666553


Q ss_pred             hhhhhhhhhccCccccCCcceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhccchhHHHHHHHH-HHHHhHHHHHHhHH
Q 007604          433 ERYRLSVAKDHGIVEKGQQVPLTIFIMLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYS-MTTLGVGNFLSSFL  511 (596)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~ig~~lg~~~  511 (596)
                                           .+.+.+++..++.+++.+...+...+++.|.+|++.||++.|+. +....+|..+++.+
T Consensus       310 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  368 (417)
T d1pv7a_         310 ---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL  368 (417)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             ---------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 35667777788999999999999999999999999999999985 56778999999999


Q ss_pred             HhhhhccccccCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 007604          512 LSTVSDITKRHGHKGWILNNLNVCHLDYYYAFFAILNVLNFVFFLVVAKF  561 (596)
Q Consensus       512 ~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  561 (596)
                      .+.+.+..                ++...|++++++.++..++.++..++
T Consensus       369 ~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         369 AGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99887633                34567888888887777776666543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=2e-12  Score=134.38  Aligned_cols=179  Identities=13%  Similarity=0.060  Sum_probs=139.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHH
Q 007604           32 WRACSFVVVYEVFERMAYHGISSNLVMYLTDKLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYL  111 (596)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  111 (596)
                      .+.++.+....++.....++...+++.|+.+.++.+..+.+.......++..++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            45677777888888888899999999999999999999999999999999999999999999998 88765554444333


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhH
Q 007604          112 MGMIVLALSVSLSGLKPPPCNDINSQDCRKASTLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFF  191 (596)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  191 (596)
                      +..+.......                   ....+.....+..++.|++.++..+....+..|.+|++.      |+++.
T Consensus       327 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~  381 (447)
T d1pw4a_         327 LVTIATIVYWM-------------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAA  381 (447)
T ss_dssp             HHHHHHHHTTS-------------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHH
T ss_pred             HHHHHHHHHHh-------------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence            33222222110                   011255566677778888888888899999999999885      99999


Q ss_pred             HHHHHHHHH-HHHHhhhhhhhccccccchhhhHHHHHHHHHHHHHH
Q 007604          192 NWWMFSIFF-GTLLGNTVLVYIQDDVGWALGYGLPALGLAIAIAIF  236 (596)
Q Consensus       192 ~~~~~~~~i-g~~l~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  236 (596)
                      ++.+...++ |..++|.+.|++.+..||+..|++.+...+++.++.
T Consensus       382 g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            998888777 456789999999999999998887766555554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1e-12  Score=133.77  Aligned_cols=145  Identities=10%  Similarity=-0.064  Sum_probs=120.7

Q ss_pred             hcCCChhhhhhHHHHHHHHHHHhhhhhHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcccccc
Q 007604           63 KLHHGTVKSANNVTNWGGTIWVTPIFGAGVAEAYLGRYWTFVIAFFFYLMGMIVLALSVSLSGLKPPPCNDINSQDCRKA  142 (596)
Q Consensus        63 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (596)
                      ..+.+....+.......++..++..+.|++.||+ |||+++.++.++..++.++.....                     
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~---------------------  310 (417)
T d1pv7a_         253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT---------------------  310 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC---------------------
T ss_pred             ccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc---------------------
Confidence            3445566777788888899999999999999998 999999999998888887776553                     


Q ss_pred             ccchhHHHHHHHHHHHHhccCcccchhhhhhccCCCCChhhhhhhhhhHHHH-HHHHHHHHHHhhhhhhhccccccchhh
Q 007604          143 STLQLGTFFAALYTLAVGTGGTKPNILTIAADQFDEFEPKEKAHKLSFFNWW-MFSIFFGTLLGNTVLVYIQDDVGWALG  221 (596)
Q Consensus       143 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~l~~~~~~~l~~~~g~~~~  221 (596)
                         +.+.+++..++.|++.+...+...+++.|.+|++.      |++..+.. .....+|..++|.+.|++.+..||+..
T Consensus       311 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~  381 (417)
T d1pv7a_         311 ---SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA  381 (417)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             ---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence               66777788888999999999999999999999986      99999975 456679999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 007604          222 YGLPALGLAIAIAIFLA  238 (596)
Q Consensus       222 f~~~~~~~~~~~~~~~~  238 (596)
                      |++.++..++..++.++
T Consensus       382 ~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         382 YLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            98877665554444333