Citrus Sinensis ID: 007609

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590------
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALGEKSSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
ccccccccccHHHHcccccEEEEcccccEEEEEcccccccccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHcccEEEEEEEccccEEEEEEccccccccccEEEcccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHcccHHHHHHHHccEEEEcccccccccHHHHHHHHHHHccccccccEEEEccccccccccEEEcEEEEccccccccccccHHHHHHHccccccccccccccccccEEEEEccc
cccccccccHHHHHHHcccEEEEcccccEEEEcccccccccccccEEEEEccccccccHHHHHHHHcccccccHHHHHHHcHHHHHHHcHHHHHHHHccccccccccccccccccccccccccHHHHHHcccccccHHccEEEEEccccccccccccccccccccccccccccccccccHHHHHccccccEEEEccccccEEEccccccHHHHHHHHHHHHHHHHHHHccccHHHHccccEEEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEcccccccHHHHHHHccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccHHEEEcHHHHHccccccccEEccccccccccccccHHHccccccccccccccccccHcccccEcccccEEEEccccccccccccccHcccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHcEEEcccccccccHHHHHHHHHHHHcccccEEEEEccccccccccEEEEEcHHHHHHHHHHHHHHHcHHHHHHccccEEEcccccccHHHHHHHHHHHcc
mdylktvvpsqliaergsnlvvinpgsaniriglaqhdtplniphciarrtsqvpkrnvVDQMLNSQVTTSQHVERERAYDVIASLMkipfldeevannsfprkmgrvdafnqqnsrkdvafswtnvyekepmpstalgekssssmnhGIIKesmgqhrntdikELNSSERKFREFicgeealrvsptepycihrpirrghlnisqhypmQQVLEDLYAIWDWILTeklhiprserNLYSAILVlpesfdnrEIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVedgvalpntektlpfggedisrCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHsyedgmppgshktrlialnvppmglfypkllvpdvypppprswfndyedmledtwhtdfprrsdisdnfypginvglpmwesypvlttkpkkeekigLAEAVTSSILSTGRIDLQRKLFCSIQLIGgvaltgglipaveervlhaipsneaIDMVEVLQsrtnptyvswkggavLGILDFGRDAWIHREDwirngihigsgrkykdsYFLQAQAMCYINS
mdylktvvpsqliaergsNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMlnsqvttsqhvereRAYDVIASLMKIPFLDEEVANNSFPRKMGrvdafnqqnsrkdvaFSWTNVYEKEPMPSTALGEKSSSSMNHGIIkesmgqhrntdIKELNSSERKFREFIcgeealrvsptepyCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIrngihigsgrkYKDSYFLQAQAMCYINS
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALGEKSSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
*****TVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQV***NVVD************VERERAYDVIASLMKIPFLDEEVAN*********************VAFSWTNVY********************************************FREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYI**
******V*******ERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRT***************************************************************************************************************IKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDI************************PKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNE***MVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEP*************MNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
*DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANN********************VAFSWTNVYEKEPMPSTALGEKSSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
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MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALGEKSSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query596 2.2.26 [Sep-21-2011]
Q9LSW2596 Actin-related protein 9 O yes no 0.974 0.974 0.626 0.0
A2XQX0586 Actin-related protein 9 O N/A no 0.973 0.989 0.622 0.0
Q0JF03586 Actin-related protein 9 O yes no 0.973 0.989 0.622 0.0
P59679623 Actin-related protein 8 O yes no 0.857 0.820 0.256 2e-50
Q8R2S9624 Actin-related protein 8 O yes no 0.592 0.565 0.320 1e-44
D2I1E3624 Actin-related protein 8 O yes no 0.592 0.565 0.320 8e-44
Q1LZF2624 Actin-related protein 8 O yes no 0.592 0.565 0.317 1e-43
Q9H981624 Actin-related protein 8 O yes no 0.592 0.565 0.312 7e-43
B5X2S3632 Actin-related protein 8 O N/A no 0.593 0.560 0.315 2e-42
Q5RDA1624 Actin-related protein 8 O yes no 0.592 0.565 0.312 3e-42
>sp|Q9LSW2|ARP9_ARATH Actin-related protein 9 OS=Arabidopsis thaliana GN=ARP9 PE=2 SV=1 Back     alignment and function desciption
 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/595 (62%), Positives = 464/595 (77%), Gaps = 14/595 (2%)

Query: 2   DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVD 61
           DYLKTV P+Q+++ERG+NLVVIN GSAN+R+GLA  + P N+P+CIAR  +Q  K  VVD
Sbjct: 14  DYLKTVAPTQILSERGANLVVINLGSANVRVGLAMDEKPFNVPNCIARYITQSGKPTVVD 73

Query: 62  QMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS-RKDV 120
           QMLN++VTT+QHV+RERAY+  ASL+KI FLDE  ++ S  RKMGR+D +NQ ++ +KD 
Sbjct: 74  QMLNTEVTTNQHVDRERAYNSAASLLKILFLDESSSSGSASRKMGRIDGYNQASTIKKDS 133

Query: 121 AFSWTNVYEKEPMPSTALGEKSSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGE 180
            F+WT+VYE E +   +L   + +S + G    S      TD K+ + S+RK+R+ I GE
Sbjct: 134 VFTWTDVYEDEKI---SLASPAETSPDKGDASASEAVPDVTDSKDTSESKRKYRKMIFGE 190

Query: 181 EALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 240
           EAL++SP EPYC++ PIRRGH N+S HY  Q+V EDL AI DWIL EKLHI   ER  + 
Sbjct: 191 EALKISPKEPYCLYHPIRRGHFNVSPHYSAQRVCEDLTAILDWILLEKLHITHKERFSFH 250

Query: 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSV 300
           A++V+PE+FD REIKEML+IVL +L F SAVVHQEGL+AVFGNGL+TAC+VN+GAQ ++V
Sbjct: 251 AVIVVPETFDTREIKEMLTIVLGELYFNSAVVHQEGLSAVFGNGLTTACIVNIGAQTSTV 310

Query: 301 ICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 360
           +CVEDGV+LPNTEK LPFGGEDI RCLLW QRH+Q WPQI TD+L K +D+LMLN++KES
Sbjct: 311 VCVEDGVSLPNTEKILPFGGEDICRCLLWIQRHYQKWPQINTDVLAKPIDMLMLNQLKES 370

Query: 361 YCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWF 420
           +CEI+ GE++ VA VHSYE+GMP   HKT L +LNVPPMGLFYP LLVP+++P PPR WF
Sbjct: 371 FCEIRAGELETVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPRQWF 430

Query: 421 NDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTS 480
            DYE+MLEDTW+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+TS
Sbjct: 431 QDYENMLEDTWNMDFGG----------GGNMGLPMWDSFAFSPSKPKKEEKIGLAEAITS 480

Query: 481 SILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNP 540
           SILS GRIDL+RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAID V+VL SRT P
Sbjct: 481 SILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEP 540

Query: 541 TYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN 595
            +V+WKGGA+LGILDFGR+AWI R  W+ NG++ G  +KYKDSY LQ QAM +IN
Sbjct: 541 QFVTWKGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595

Arabidopsis thaliana (taxid: 3702)
>sp|A2XQX0|ARP9_ORYSI Actin-related protein 9 OS=Oryza sativa subsp. indica GN=ARP9 PE=2 SV=2 Back     alignment and function description
>sp|Q0JF03|ARP9_ORYSJ Actin-related protein 9 OS=Oryza sativa subsp. japonica GN=ARP9 PE=2 SV=1 Back     alignment and function description
>sp|P59679|ARP8_DANRE Actin-related protein 8 OS=Danio rerio GN=actr8 PE=2 SV=1 Back     alignment and function description
>sp|Q8R2S9|ARP8_MOUSE Actin-related protein 8 OS=Mus musculus GN=Actr8 PE=2 SV=1 Back     alignment and function description
>sp|D2I1E3|ARP8_AILME Actin-related protein 8 OS=Ailuropoda melanoleuca GN=ACTR8 PE=3 SV=1 Back     alignment and function description
>sp|Q1LZF2|ARP8_BOVIN Actin-related protein 8 OS=Bos taurus GN=ACTR8 PE=2 SV=1 Back     alignment and function description
>sp|Q9H981|ARP8_HUMAN Actin-related protein 8 OS=Homo sapiens GN=ACTR8 PE=1 SV=2 Back     alignment and function description
>sp|B5X2S3|ARP8_SALSA Actin-related protein 8 OS=Salmo salar GN=actr8 PE=2 SV=1 Back     alignment and function description
>sp|Q5RDA1|ARP8_PONAB Actin-related protein 8 OS=Pongo abelii GN=ACTR8 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query596
255576846589 conserved hypothetical protein [Ricinus 0.988 1.0 0.812 0.0
296083596632 unnamed protein product [Vitis vinifera] 0.993 0.936 0.797 0.0
225433003602 PREDICTED: actin-related protein 9-like 0.991 0.981 0.797 0.0
449432582599 PREDICTED: actin-related protein 9-like 0.993 0.988 0.777 0.0
356533797591 PREDICTED: actin-related protein 9-like 0.991 1.0 0.741 0.0
356576460589 PREDICTED: actin-related protein 9-like 0.988 1.0 0.736 0.0
449526595512 PREDICTED: actin-related protein 9-like, 0.859 1.0 0.779 0.0
224107879480 actin related protein [Populus trichocar 0.805 1.0 0.779 0.0
297795073596 hypothetical protein ARALYDRAFT_494650 [ 0.974 0.974 0.636 0.0
42573559584 actin-related protein 9 [Arabidopsis tha 0.976 0.996 0.627 0.0
>gi|255576846|ref|XP_002529309.1| conserved hypothetical protein [Ricinus communis] gi|223531233|gb|EEF33078.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1027 bits (2656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/596 (81%), Positives = 538/596 (90%), Gaps = 7/596 (1%)

Query: 1   MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVV 60
           MDYLKTVVPSQL+AERGSNLVVINPGSA++RIGLA  DTP N+PHCIAR +SQ PK NV 
Sbjct: 1   MDYLKTVVPSQLVAERGSNLVVINPGSASVRIGLAPQDTPFNVPHCIARYSSQSPKLNVR 60

Query: 61  DQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDV 120
           DQMLNSQVTT+QH+ERE+AYD+IAS +KIPFLDEEVANNSFPRK+GRVD FN Q+ RKDV
Sbjct: 61  DQMLNSQVTTAQHMEREKAYDIIASYLKIPFLDEEVANNSFPRKIGRVDGFNPQSGRKDV 120

Query: 121 AFSWTNVYEKEPMPSTALGEKSSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGE 180
           AF+WTNVYE++   S A    S    N G I  S+ +  +TD K    S  K+R FICGE
Sbjct: 121 AFTWTNVYEQDTSSSLA----SERPTNEGQIGGSLEKLESTDAK--GPSTSKYRGFICGE 174

Query: 181 EALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 240
           EAL++SPTEPYC+HRPIRRGHLNISQHYPMQQVLEDL+AIWDWIL EKLHIP+SERN+Y+
Sbjct: 175 EALQISPTEPYCLHRPIRRGHLNISQHYPMQQVLEDLHAIWDWILIEKLHIPQSERNMYA 234

Query: 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSV 300
           AILVLPE+FDNREIKEM+SIVLRDLRF+SAVVHQEGLAAVFGNGLSTACV+N+GAQVTSV
Sbjct: 235 AILVLPETFDNREIKEMISIVLRDLRFSSAVVHQEGLAAVFGNGLSTACVINIGAQVTSV 294

Query: 301 ICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 360
           IC+EDGVALPNTEKTLPFGGED+SRCLLWTQRHHQTWPQIRTDILTK +DLLMLNR++ES
Sbjct: 295 ICIEDGVALPNTEKTLPFGGEDLSRCLLWTQRHHQTWPQIRTDILTKPLDLLMLNRLRES 354

Query: 361 YCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWF 420
           YCEIKEGE+DAVAVV SYEDGMP GSHKTRL ALNVPPMGLFYP LLVPDVYPPPPRSWF
Sbjct: 355 YCEIKEGEVDAVAVVQSYEDGMPAGSHKTRLNALNVPPMGLFYPMLLVPDVYPPPPRSWF 414

Query: 421 NDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTS 480
           +DYEDMLEDTWH ++PRR D+SD  +P  + GLPMW+SYPV  +KPKKEEK+GLAEA+TS
Sbjct: 415 HDYEDMLEDTWHVEYPRRPDMSDGLFPAFS-GLPMWDSYPVFASKPKKEEKVGLAEAITS 473

Query: 481 SILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNP 540
           SILSTGRIDL+RKLFCSIQLIGGVALT GLIP VE+RVLHAIPSNE ID VEVLQSR NP
Sbjct: 474 SILSTGRIDLKRKLFCSIQLIGGVALTPGLIPVVEDRVLHAIPSNEVIDTVEVLQSRINP 533

Query: 541 TYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS 596
           T+V+WKGGA+LG+LDFGRDAWIHREDWIRNGIHIGSGRKYKDSY+LQAQAMCYINS
Sbjct: 534 TFVTWKGGAILGVLDFGRDAWIHREDWIRNGIHIGSGRKYKDSYYLQAQAMCYINS 589

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296083596|emb|CBI23585.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433003|ref|XP_002280839.1| PREDICTED: actin-related protein 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432582|ref|XP_004134078.1| PREDICTED: actin-related protein 9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356533797|ref|XP_003535445.1| PREDICTED: actin-related protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356576460|ref|XP_003556349.1| PREDICTED: actin-related protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|449526595|ref|XP_004170299.1| PREDICTED: actin-related protein 9-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224107879|ref|XP_002314638.1| actin related protein [Populus trichocarpa] gi|222863678|gb|EEF00809.1| actin related protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297795073|ref|XP_002865421.1| hypothetical protein ARALYDRAFT_494650 [Arabidopsis lyrata subsp. lyrata] gi|297311256|gb|EFH41680.1| hypothetical protein ARALYDRAFT_494650 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42573559|ref|NP_974876.1| actin-related protein 9 [Arabidopsis thaliana] gi|332007588|gb|AED94971.1| actin-related protein 9 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query596
TAIR|locus:2176516596 ARP9 "actin-related protein 9" 0.974 0.974 0.626 7.9e-204
UNIPROTKB|F1NXV7621 ACTR8 "Uncharacterized protein 0.380 0.365 0.385 7.5e-59
UNIPROTKB|F1SH80624 ACTR8 "Uncharacterized protein 0.379 0.362 0.394 7.3e-58
MGI|MGI:1860775624 Actr8 "ARP8 actin-related prot 0.394 0.376 0.388 4.6e-57
UNIPROTKB|Q1LZF2624 ACTR8 "Actin-related protein 8 0.379 0.362 0.389 2.4e-56
UNIPROTKB|Q9H981624 ACTR8 "Actin-related protein 8 0.379 0.362 0.381 1e-55
ZFIN|ZDB-GENE-030131-5065623 actr8 "ARP8 actin-related prot 0.401 0.383 0.354 7.2e-53
POMBASE|SPAC664.02c662 arp8 "actin-like protein, Ino8 0.568 0.512 0.298 2.7e-41
UNIPROTKB|Q0IEG8562 Arp8 "Actin-related protein 8" 0.382 0.405 0.330 1.4e-40
FB|FBgn0030877607 Arp8 "Actin-related protein 8" 0.290 0.285 0.323 4.5e-35
TAIR|locus:2176516 ARP9 "actin-related protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1972 (699.2 bits), Expect = 7.9e-204, P = 7.9e-204
 Identities = 373/595 (62%), Positives = 464/595 (77%)

Query:     2 DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVD 61
             DYLKTV P+Q+++ERG+NLVVIN GSAN+R+GLA  + P N+P+CIAR  +Q  K  VVD
Sbjct:    14 DYLKTVAPTQILSERGANLVVINLGSANVRVGLAMDEKPFNVPNCIARYITQSGKPTVVD 73

Query:    62 QMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS-RKDV 120
             QMLN++VTT+QHV+RERAY+  ASL+KI FLDE  ++ S  RKMGR+D +NQ ++ +KD 
Sbjct:    74 QMLNTEVTTNQHVDRERAYNSAASLLKILFLDESSSSGSASRKMGRIDGYNQASTIKKDS 133

Query:   121 AFSWTNVYEKEPMPSTALGEKSSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGE 180
              F+WT+VYE E +   +L   + +S + G    S      TD K+ + S+RK+R+ I GE
Sbjct:   134 VFTWTDVYEDEKI---SLASPAETSPDKGDASASEAVPDVTDSKDTSESKRKYRKMIFGE 190

Query:   181 EALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 240
             EAL++SP EPYC++ PIRRGH N+S HY  Q+V EDL AI DWIL EKLHI   ER  + 
Sbjct:   191 EALKISPKEPYCLYHPIRRGHFNVSPHYSAQRVCEDLTAILDWILLEKLHITHKERFSFH 250

Query:   241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSV 300
             A++V+PE+FD REIKEML+IVL +L F SAVVHQEGL+AVFGNGL+TAC+VN+GAQ ++V
Sbjct:   251 AVIVVPETFDTREIKEMLTIVLGELYFNSAVVHQEGLSAVFGNGLTTACIVNIGAQTSTV 310

Query:   301 ICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 360
             +CVEDGV+LPNTEK LPFGGEDI RCLLW QRH+Q WPQI TD+L K +D+LMLN++KES
Sbjct:   311 VCVEDGVSLPNTEKILPFGGEDICRCLLWIQRHYQKWPQINTDVLAKPIDMLMLNQLKES 370

Query:   361 YCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWF 420
             +CEI+ GE++ VA VHSYE+GMP   HKT L +LNVPPMGLFYP LLVP+++P PPR WF
Sbjct:   371 FCEIRAGELETVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPRQWF 430

Query:   421 NDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTS 480
              DYE+MLEDTW+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+TS
Sbjct:   431 QDYENMLEDTWNMDFGG----------GGNMGLPMWDSFAFSPSKPKKEEKIGLAEAITS 480

Query:   481 SILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNP 540
             SILS GRIDL+RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAID V+VL SRT P
Sbjct:   481 SILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEP 540

Query:   541 TYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN 595
              +V+WKGGA+LGILDFGR+AWI R  W+ NG++ G  +KYKDSY LQ QAM +IN
Sbjct:   541 QFVTWKGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595
GO:0005737 "cytoplasm" evidence=ISM
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
UNIPROTKB|F1NXV7 ACTR8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH80 ACTR8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1860775 Actr8 "ARP8 actin-related protein 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q1LZF2 ACTR8 "Actin-related protein 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H981 ACTR8 "Actin-related protein 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5065 actr8 "ARP8 actin-related protein 8 homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPAC664.02c arp8 "actin-like protein, Ino80 complex subunit Arp8" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IEG8 Arp8 "Actin-related protein 8" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
FB|FBgn0030877 Arp8 "Actin-related protein 8" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LSW2ARP9_ARATHNo assigned EC number0.62680.97480.9748yesno
Q0JF03ARP9_ORYSJNo assigned EC number0.62290.97310.9897yesno
A2XQX0ARP9_ORYSINo assigned EC number0.62290.97310.9897N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query596
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 4e-18
pfam00022367 pfam00022, Actin, Actin 2e-16
smart00268373 smart00268, ACTIN, Actin 2e-12
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 6e-06
smart00268373 smart00268, ACTIN, Actin 4e-05
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 0.001
pfam00022367 pfam00022, Actin, Actin 0.002
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information 
 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 86/431 (19%), Positives = 148/431 (34%), Gaps = 59/431 (13%)

Query: 159 RNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLY 218
           R  D   +     +   ++ G EA          +  PI  G   I  ++   +      
Sbjct: 38  RRRDEDSVMEDTEEKDTYV-GNEAQNDRDNSLLELRYPIENG---IILNWDAME------ 87

Query: 219 AIWDWILTEKLHIPRSERNLYSAILVLPESFDN-REIKE-MLSIVLRDLRFASAVVHQEG 276
            IWD+    K          +   L+L E   N    +E +  ++   L   +  +  + 
Sbjct: 88  QIWDYTFFNKGD-LLPSPEEHP--LLLTEPPLNPPSNREKITELLFETLNVPALYLAIQA 144

Query: 277 LAAVFGNGLS--TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR---CLLWTQ 331
           + +++ +G S  T  V++ G  VT VI V DG+ LP   K +  GG DI+     LL  +
Sbjct: 145 VLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLL--R 202

Query: 332 RHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEI----DAVAVVHSYEDGMPPGSH 387
             +                  ++N IKE  CE  +       DA       E+   P   
Sbjct: 203 EKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEK--PAEK 260

Query: 388 KTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDF----------PR 437
            T           +      +PD             E    +     F            
Sbjct: 261 STESTFQLSKETSIAKESKELPD-----------GEEIEFGN--EERFKAPEILFKPELP 307

Query: 438 RSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCS 497
            S + +      +    + E+Y +  T    +   GL E V  SI      D+++ L+ +
Sbjct: 308 ISGLEEAGKIDESKQELVAENYEISPTNLGNDI-AGLPELVYQSIQI-CDEDVRKSLYSN 365

Query: 498 IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDM-VEVLQSRTNPTYVSWKGGAVLGILDF 556
           I L GG       IP   ER+   + S       V V+    +P+  +W G ++L  L+ 
Sbjct: 366 IVLTGGT----SKIPGFAERLQKELTSLAPSIWKVSVIPPP-DPSLDAWLGASILASLET 420

Query: 557 GRDAWIHREDW 567
            +  WI +E++
Sbjct: 421 FQQLWITKEEY 431

Length = 444
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 596
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 99.96
PRK13927334 rod shape-determining protein MreB; Provisional 99.96
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.94
PRK13929335 rod-share determining protein MreBH; Provisional 99.91
PRK13928336 rod shape-determining protein Mbl; Provisional 99.88
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.85
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.62
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.44
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.22
PRK09472420 ftsA cell division protein FtsA; Reviewed 98.82
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 98.79
CHL00094 621 dnaK heat shock protein 70 98.77
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 98.73
PTZ00400 663 DnaK-type molecular chaperone; Provisional 98.72
PLN03184 673 chloroplast Hsp70; Provisional 98.72
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 98.7
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 98.68
TIGR02350595 prok_dnaK chaperone protein DnaK. Members of this 98.66
PRK13411 653 molecular chaperone DnaK; Provisional 98.63
PTZ00009 653 heat shock 70 kDa protein; Provisional 98.54
PRK05183 616 hscA chaperone protein HscA; Provisional 98.54
PRK01433595 hscA chaperone protein HscA; Provisional 98.52
PRK13410 668 molecular chaperone DnaK; Provisional 98.49
PRK11678450 putative chaperone; Provisional 98.39
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 98.28
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 98.27
COG0443579 DnaK Molecular chaperone [Posttranslational modifi 98.12
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 98.04
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 97.48
PRK13917344 plasmid segregation protein ParM; Provisional 97.25
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 96.77
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 96.3
PRK10719475 eutA reactivating factor for ethanolamine ammonia 95.72
COG4820277 EutJ Ethanolamine utilization protein, possible ch 95.48
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 94.74
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 91.91
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 90.37
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 88.26
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 87.3
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 86.85
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 85.3
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 85.07
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 84.71
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 81.61
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 81.21
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-93  Score=736.02  Aligned_cols=536  Identities=40%  Similarity=0.681  Sum_probs=399.3

Q ss_pred             CCccccccchhhHhhcCCcEEEEcCCCceeeeeccCCCCCCccceeeEEecCCC-Cccccccccccccc----cchhhhh
Q 007609            1 MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQV-PKRNVVDQMLNSQV----TTSQHVE   75 (596)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~iVihpGS~~lriG~asd~~P~~ip~~iAr~~~~~-p~~~~~~~~~~~~~----~~~~~~~   75 (596)
                      ++|++.+-++|+..+++.|+||||+||+|||||+|+|.+|.|+||||||+.++. -++......+.+..    +.....+
T Consensus        16 ~p~~~g~ee~q~~e~ed~k~ivih~gsqnlrig~a~d~np~tv~~~iar~~rap~sdr~~~~p~l~p~~~e~~n~~~~~e   95 (618)
T KOG0797|consen   16 QPYLKGVEETQILEEEDAKLIVIHLGSQNLRIGLAMDENPFTVPNCIARYIRAPVSDRMLNTPVLTPQHVEERNYNSAAE   95 (618)
T ss_pred             CCcccCCCccccccccCCCeeEecCCcchhhccccccCCCcccccceeecccCchhhhcccCcCCCccccccccccchhh
Confidence            479999999999999999999999999999999999999999999999998761 11112222222221    1112234


Q ss_pred             HHHHHHHHHhhccCCcchHhhhcCCCCccccccccccccccccccceeecccccCCCCCCCccccccccccccccccccc
Q 007609           76 RERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALGEKSSSSMNHGIIKESM  155 (596)
Q Consensus        76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~e~~  155 (596)
                      +.+.....++.|+..          +-++++++..||..                          ....+||+--++|.+
T Consensus        96 f~~~lll~~s~lss~----------~~~kk~ri~v~~~~--------------------------q~lkn~n~~S~aetv  139 (618)
T KOG0797|consen   96 FLKILLLDESSLSSS----------ASRKKGRIDVYNQA--------------------------QTLKNDNVASPAETV  139 (618)
T ss_pred             hhHHHHHhhhhhhhH----------HHhhcCcccccCch--------------------------HHhhcccccCccccC
Confidence            444433333444332          22345555555532                          223466666667777


Q ss_pred             CCCCC-cccccccccc------ccCcceEEccccccCCCCCCcEEEcceecCeeeec-CCCCccccHHHHHHHHHHHhhh
Q 007609          156 GQHRN-TDIKELNSSE------RKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHYPMQQVLEDLYAIWDWILTE  227 (596)
Q Consensus       156 ~~~~~-~~~~~~~~~~------~~~~~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~-~~~s~~~~~~dle~Iw~~~l~~  227 (596)
                      |..+. .-..+|.+.+      ....+-++|++|..+   .+|.|++||++|.||++ +|+|+|+.+.|+++||+|+|.+
T Consensus       140 P~ps~~~a~~~wld~e~~~hv~v~c~kr~~~ee~n~i---~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e  216 (618)
T KOG0797|consen  140 PDPSASEAVPDWLDSEDTSHVKVKCRKRIFGEEANKI---SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLE  216 (618)
T ss_pred             CCCCCCcCCCCccccccchHHHHHHHHHHhhhhhhcC---CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHH
Confidence            64332 1122221111      223455566777766   48999999999999997 7889999999999999999999


Q ss_pred             hcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCe
Q 007609          228 KLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGV  307 (596)
Q Consensus       228 ~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~  307 (596)
                      .|+|+++.+.+|++|||+||.|+++++++++.++|.+|||.++.++|+|+||+||+|++++||||||||+|+|+||+||.
T Consensus       217 ~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGv  296 (618)
T KOG0797|consen  217 KLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGV  296 (618)
T ss_pred             hcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCcccccee-eecccCCCCCCC
Q 007609          308 ALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAV-VHSYEDGMPPGS  386 (596)
Q Consensus       308 ~l~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~-~~~~~~~~p~~~  386 (596)
                      ++++++++++|||+|||++|.++|++. .|| |+++++...+||.++++|||++|++..+++.++.. |..+++..|  +
T Consensus       297 s~~ntri~L~YGGdDitr~f~~ll~rs-~FP-y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~--~  372 (618)
T KOG0797|consen  297 SLPNTRIILPYGGDDITRCFLWLLRRS-GFP-YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPP--T  372 (618)
T ss_pred             cccCceEEeccCCchHHHHHHHHHHhc-CCC-cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCc--c
Confidence            999999999999999999999999875 577 46778888999999999999999999877665422 333343334  5


Q ss_pred             ceeeee---eecCCCCCCCCCcccCCCC--------CCCCCCCCCCCccccccCCccccCCC------------------
Q 007609          387 HKTRLI---ALNVPPMGLFYPKLLVPDV--------YPPPPRSWFNDYEDMLEDTWHTDFPR------------------  437 (596)
Q Consensus       387 ~k~~~~---~~~~aP~~lf~p~i~~~e~--------~~~p~~~~~~d~ed~~~d~~~~~~~~------------------  437 (596)
                      .+|+|+   +.++|||+||+|.+|..+.        +.+|.+.++.|++-.+.+++....+.                  
T Consensus       373 ~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~  452 (618)
T KOG0797|consen  373 LKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRI  452 (618)
T ss_pred             eeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhcccccccccccccccccccccccccc
Confidence            567665   5789999999999997765        23333322222222222222221110                  


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCc------------------cCCCCCccccCCHHHHHHHHHHhcCChhHHHHHhcCeE
Q 007609          438 RSDISDNFYPGINVGLPMWESYPV------------------LTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQ  499 (596)
Q Consensus       438 r~~~~E~lfp~~~g~~~~~~~~~~------------------~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIv  499 (596)
                      |-..+|..-.+..| ....+.+..                  .-...+..-..+|+++|+.||..|...|.+++||++|+
T Consensus       453 ~~~l~~~~d~~Elg-~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil  531 (618)
T KOG0797|consen  453 RDQLPEKPDKEELG-VTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSIL  531 (618)
T ss_pred             cccccccccchhhc-cccccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHH
Confidence            00111111000000 000000000                  00001111234788899999999988999999999999


Q ss_pred             EEcCCCCcCChHHHHHHHHhhhCCC-CCCcceEEEcCCC--CCCceeEEeceeeeeccCCcccceeeHHHHHhcCcceee
Q 007609          500 LIGGVALTGGLIPAVEERVLHAIPS-NEAIDMVEVLQSR--TNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGS  576 (596)
Q Consensus       500 LvGG~S~i~Gf~~RL~~eL~~~~p~-~~~~~~V~v~~~~--~dp~~~aW~GgSIla~L~sf~~~wItr~EYee~G~~il~  576 (596)
                      ++||+.++|||.+.||+++...+|+ ...++.|.|++++  |||++++||||+|||.|+..+++||++.||+.+|.|++.
T Consensus       532 ~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~  611 (618)
T KOG0797|consen  532 LVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQ  611 (618)
T ss_pred             hhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhh
Confidence            9999999999999999999998887 3346789999865  999999999999999999999999999999999999999


Q ss_pred             eccC
Q 007609          577 GRKY  580 (596)
Q Consensus       577 rk~~  580 (596)
                      .||+
T Consensus       612 ~k~~  615 (618)
T KOG0797|consen  612 YKKY  615 (618)
T ss_pred             hccc
Confidence            9998

>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query596
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 4e-44
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 2e-09
4am6_A655 C-terminal Domain Of Actin-related Protein Arp8 Fro 7e-27
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 4e-07
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 4e-07
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 4e-06
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 9e-04
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure 
Iteration: 1

 Score =  176 bits (445), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/408 (31%), Positives = 198/408 (48%), Gaps = 56/408 (13%)
Query: 7   VVPSQLIAERGSN-LVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLN 65
           +VP  L  +  SN ++VI+PGS  +RIG A    P +IPH IARR  Q  +    D  L 
Sbjct: 3   LVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLL 62
Query: 66  SQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWT 125
            +         +R          +  +D+ + +        R+    +Q           
Sbjct: 63  REGLNKPESNEQRQNG-------LKMVDQAIWSKKMSNGTRRIPVSPEQ----------A 105
Query: 126 NVYEKEPMPSTALGEKSSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRV 185
             Y K+  P+              I+    G       K  N+S     E++ GEEAL V
Sbjct: 106 RSYNKQMRPA--------------ILDHCSGN------KWTNTSHHP--EYLVGEEALYV 143
Query: 186 SPTEPYCIHRPIRRGHLNISQHYP-----MQQVLEDLYAIWDWILTEKLHIPRSERNLYS 240
           +P + Y IH PIRRG LNI   +P     +  VL D+  IW   + + L IP  +   Y 
Sbjct: 144 NPLDCYNIHWPIRRGQLNI---HPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYR 200
Query: 241 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSV 300
            IL++P+ ++ + +KE+++++L  + F+  VVHQE + A +G+GLS+ C+V++G Q TSV
Sbjct: 201 CILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSV 260
Query: 301 ICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 360
            CVEDGV+  NT   L +GG D+SRC  W  +    +P  R   LT  MD L+L  +KE+
Sbjct: 261 CCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQ-RAGFP-YRECQLTNKMDCLLLQHLKET 318
Query: 361 YCEIKEGEIDAVAVVHSYEDGMPPGS---HKTRLIALNV-PPMGLFYP 404
           +C + + +I  +   H ++   P      ++ RL    +  PM LFYP
Sbjct: 319 FCHLDQ-DISGLQ-DHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYP 364
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure
>pdb|4AM6|A Chain A, C-terminal Domain Of Actin-related Protein Arp8 From S. Cerevisiae Length = 655 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query596
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 5e-20
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 5e-11
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-09
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-04
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 1e-09
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 5e-09
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
 Score = 92.4 bits (229), Expect = 5e-20
 Identities = 74/454 (16%), Positives = 140/454 (30%), Gaps = 92/454 (20%)

Query: 174 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPR 233
           ++    +      P + Y +   I  G         +    +     W W L  +L++  
Sbjct: 63  KKIFSEQSIG--IPRKDYELKPIIENG---------LVIDWDTAQEQWQWALQNELYLNS 111

Query: 234 SERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVN 292
           +        L+    +++ E ++  L ++L  ++F +  +        F  G     VV+
Sbjct: 112 NS---GIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVD 168

Query: 293 MGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL--LWTQR----------------HH 334
           +G    SV  + DG+ L  + +     G+ I+  +      +                  
Sbjct: 169 IGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKK 228

Query: 335 QTWPQIRTDILTKAMDLLMLNRIKESYCEI-----KEGEIDAV--AVVHSYEDGMPPGSH 387
               ++   +   A +       KE+ C I      E     +      S E   P    
Sbjct: 229 TFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIE--SPWNEE 286

Query: 388 KT-----RLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDIS 442
                  R          LF PK          P +W      +++   +   P +    
Sbjct: 287 IVFDNETRYGF----AEELFLPK------EDDIPANWPRSNSGVVKTWRNDYVPLKRTKP 336

Query: 443 DNFYPGINVGLPMWESYPVLTTKPK--------------------------KEEKIGLAE 476
                      P  E      +K                              E IGLA+
Sbjct: 337 SGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLAD 396

Query: 477 AVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERV---LHAIPSNEAIDMVEV 533
            V SSI+S+  +DL+  L  ++ L GG +   GL     +R+   L+ I  +     +  
Sbjct: 397 LVYSSIMSS-DVDLRATLAHNVVLTGGTSSIPGL----SDRLMTELNKILPSLKFR-ILT 450

Query: 534 LQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDW 567
                   Y SW GG++L  L      W+ ++++
Sbjct: 451 TGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEY 484
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query596
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.94
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.66
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.45
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.45
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.34
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.26
1yuw_A554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.05
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 98.99
2kho_A605 Heat shock protein 70; molecular chaperone, HSP70, 98.96
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 98.95
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 98.87
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 98.78
4b9q_A605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 98.67
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 98.42
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 97.68
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 97.65
3js6_A355 Uncharacterized PARM protein; partition, segregati 97.2
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 97.18
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 96.82
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 88.08
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 81.51
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.9e-94  Score=814.75  Aligned_cols=527  Identities=30%  Similarity=0.520  Sum_probs=379.8

Q ss_pred             ccchhhHhhcCCc-EEEEcCCCceeeeeccCCCCCCccceeeEEecCCCCccccccccccccc--cchhhhhHHHHHHHH
Q 007609            7 VVPSQLIAERGSN-LVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQV--TTSQHVERERAYDVI   83 (596)
Q Consensus         7 ~~~~~~~~~~~~~-~iVihpGS~~lriG~asd~~P~~ip~~iAr~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   83 (596)
                      |+|+++.++++++ ||||||||+|||||+|+|.+|++||||||||.++.....+++..+....  ..+..+++......+
T Consensus         3 ~~~~~~~~~~~~~~iIVIdpGS~~~riG~A~d~~P~~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (593)
T 4fo0_A            3 LVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMV   82 (593)
T ss_dssp             CCCGGGTTTSGGGGEEEEECCSSEEEEEETTCSSCEEEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHH
T ss_pred             CCCCccccccCCCCEEEEeCCCCCeEeeecCCCCCCeeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHH
Confidence            7999999998766 9999999999999999999999999999999876433333333322111  223333444444433


Q ss_pred             HhhccCCcchHhhhcCCCCccccccccccccccccccceeecccccCCCCCCCcccccccccccccccccccCCCCCccc
Q 007609           84 ASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALGEKSSSSMNHGIIKESMGQHRNTDI  163 (596)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~e~~~~~~~~~~  163 (596)
                      .+.++.+                                  +..+++++   ++++++.+++||++.+|+.+++++++.+
T Consensus        83 ~~~~~~~----------------------------------~~~~~~r~---~~~s~~~~~~~n~~~~p~~i~~~~~~~~  125 (593)
T 4fo0_A           83 DQAIWSK----------------------------------KMSNGTRR---IPVSPEQARSYNKQMRPAILDHCSGNKW  125 (593)
T ss_dssp             HHHHHHS----------------------------------CCTTSCCC---CCCCHHHHHHHHTTCCCEEEESSCSCCC
T ss_pred             HHHHHHH----------------------------------hhhccccc---CCCcHHHhhhhhccCCCcccCCCCcccc
Confidence            3333211                                  00111121   2355666789999999999988866543


Q ss_pred             cccccccccCcceEEccccccCCCCCCcEEEcceecCeeeec--CCCCccccHHHHHHHHHHHhhhhcCCCCCCCcccce
Q 007609          164 KELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS--QHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA  241 (596)
Q Consensus       164 ~~~~~~~~~~~~~~vGeeAl~~~~~~~~~l~~Pi~~G~in~~--~~~s~~~~~~dle~Iw~~~l~~~L~i~~~d~~~y~~  241 (596)
                      .    +....+++|||++|+++++.+.|.|+|||+||.||++  +|.|++.+|+|||+||+|+|+++|+|++++.+.|.+
T Consensus       126 ~----~~~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~pv  201 (593)
T 4fo0_A          126 T----NTSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRC  201 (593)
T ss_dssp             C----CCTTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHHHHHHHHHHHHHHHHTSCCCGGGGGGCEE
T ss_pred             c----cccccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcCHHHHHHHHHHHHHHhcCCCchhccCCcE
Confidence            2    2234478999999999988889999999999999997  566999999999999999999999999999777756


Q ss_pred             eeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeecccCcEEecchHH
Q 007609          242 ILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGE  321 (596)
Q Consensus       242 VLvip~~~~~~~vr~l~eilfe~~gf~~v~~~~esvlA~fgaG~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~  321 (596)
                      ||+.|+.+.+.++++|+++|||.|+||+++++++++||+||+|++||||||||+++|+|+||+||+++.++++++++||+
T Consensus       202 lltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~  281 (593)
T 4fo0_A          202 ILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGS  281 (593)
T ss_dssp             EEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEeCCCceeeeeeECCEEehhheEEecccHH
Confidence            66666666777767799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccc-eeeecccCCCCCC-Cceeeee---eecC
Q 007609          322 DISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAV-AVVHSYEDGMPPG-SHKTRLI---ALNV  396 (596)
Q Consensus       322 dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~-~~~~~~~~~~p~~-~~k~~~~---~~~~  396 (596)
                      +||++|.+||+.++ +| +.+.++.++.|++++++|||++|||+.+..... ..++.   ..|++ +.++.++   +...
T Consensus       282 ~lt~~L~~lL~~~~-~~-~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~~~~~~---~~p~~~~~~~~~~~~~E~~~  356 (593)
T 4fo0_A          282 DVSRCFYWLMQRAG-FP-YRECQLTNKMDCLLLQHLKETFCHLDQDISGLQDHEFQI---RHPDSPALLYQFRLGDEKLQ  356 (593)
T ss_dssp             HHHHHHHHHHHHTT-CS-CTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEEEEEEE---CCTTSCEEEEEEEECTHHHH
T ss_pred             HHHHHHHHHHHhcC-CC-ccccccccchhHHHHHHHHHHhcccccchHHhhhhhhhc---ccCCCCceeeEEeccchhhc
Confidence            99999999998775 44 455667778899999999999999997644322 12222   23433 3344443   3567


Q ss_pred             CCCCCCCCcccCCCCCCCC---CCCCCCCccc---------------------------cccCCccccCC-CCCCCCCCC
Q 007609          397 PPMGLFYPKLLVPDVYPPP---PRSWFNDYED---------------------------MLEDTWHTDFP-RRSDISDNF  445 (596)
Q Consensus       397 aP~~lf~p~i~~~e~~~~p---~~~~~~d~ed---------------------------~~~d~~~~~~~-~r~~~~E~l  445 (596)
                      +|+++|+|.++..+.....   .+. ..++++                           ..+++....++ +|+.++|.+
T Consensus       357 ~p~~lf~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~l  435 (593)
T 4fo0_A          357 APMALFYPATFGIVGQKMTTLQHRS-QGDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERL  435 (593)
T ss_dssp             HHHTTTSGGGGCCCSSCCEEECC---------------------------------------------------------
T ss_pred             CchhhcChhhhcccccccchhhhhc-ccCcccchhhhhhhhcccchhhhhhcccccccccCCCCcccccccccccCchhc
Confidence            9999999988754321100   000 001111                           12233334444 789999999


Q ss_pred             C-CCCCCCCCCC-------CCCCcc--------CCCCCccccCCHHHHHHHHHHhcCChhHHHHHhcCeEEEcCCCCcCC
Q 007609          446 Y-PGINVGLPMW-------ESYPVL--------TTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGG  509 (596)
Q Consensus       446 f-p~~~g~~~~~-------~~~~~~--------~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~i~G  509 (596)
                      | |....+....       ...+..        +......+..||++||++||.+|+..|+|++||+||+|+||+|+|||
T Consensus       436 f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pG  515 (593)
T 4fo0_A          436 HSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHK  515 (593)
T ss_dssp             -----------------------------------CHHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBT
T ss_pred             cCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhc
Confidence            8 4332111100       000000        00011234579999999999999447999999999999999999999


Q ss_pred             hHHHHHHHHhhhCCCCCC--cceEEEcCC--CCCCceeEEeceeeeeccCCcccceeeHHHHHhcCcceeeeccC
Q 007609          510 LIPAVEERVLHAIPSNEA--IDMVEVLQS--RTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY  580 (596)
Q Consensus       510 f~~RL~~eL~~~~p~~~~--~~~V~v~~~--~~dp~~~aW~GgSIla~L~sf~~~wItr~EYee~G~~il~rk~~  580 (596)
                      |.+||++||..++|..++  +.+|+|++.  ..||++++|+||||||+|++|+++||||+||+|+|++||++||+
T Consensus       516 f~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~  590 (593)
T 4fo0_A          516 AQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA  590 (593)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred             HHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence            999999999999986542  235677763  36999999999999999999999999999999999999999995
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 596
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 4e-20
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 1e-15
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 8e-07
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.1 bits (215), Expect = 4e-20
 Identities = 50/289 (17%), Positives = 94/289 (32%), Gaps = 67/289 (23%)

Query: 286 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDIL 345
           +T  V++ G  VT  + + +G ALP+    L   G D++  L+            R    
Sbjct: 2   TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE-------RGYSF 54

Query: 346 TKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 405
               +  ++  IKE  C +             +E+ M   +  + L      P G     
Sbjct: 55  VTTAEREIVRDIKEKLCYV----------ALDFENEMATAASSSSLEKSYELPDG----- 99

Query: 406 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTK 465
                                      T    R    +  +    +G+            
Sbjct: 100 ------------------------QVITIGNERFRCPETLFQPSFIGM------------ 123

Query: 466 PKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSN 525
               E  G+ E   +SI     ID+++ L+ +  + GG      + P + +R+   I + 
Sbjct: 124 ----ESAGIHETTYNSI-MKCDIDIRKDLYANNVMSGGTT----MYPGIADRMQKEITAL 174

Query: 526 EAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHI 574
               M   + +     Y  W GG++L  L   +  WI ++++   G  I
Sbjct: 175 APSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 223
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query596
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 99.96
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.88
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.82
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 98.86
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 98.47
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 97.62
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 97.15
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 96.0
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 93.4
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 92.01
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 86.02
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 85.13
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 84.19
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 80.19
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-44  Score=355.56  Aligned_cols=223  Identities=21%  Similarity=0.358  Sum_probs=178.9

Q ss_pred             CceEEEEEeCCCceEEEEeeCCeecccCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceec
Q 007609          285 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI  364 (596)
Q Consensus       285 ~stg~VVDiGa~~TsV~pV~dG~~l~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v  364 (596)
                      +|||||||+|++.|+|+||+||+++.+++.++++||++||++|.++|..++.       ++....+.++++++|+.+|++
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~-------~~~~~~~~~~~~~~ke~~~~~   73 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYV   73 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTC-------CCCSHHHHHHHHHHHHHHCCC
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccC-------CcCCHHHHHHHHHHHHHHhhc
Confidence            5899999999999999999999999999999999999999999999987652       344456788999999999999


Q ss_pred             cCCccccceeeecccCCCCCCCceeeeeeecCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCC
Q 007609          365 KEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISD  443 (596)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~~~p~~~~~~d~ed~~~d~~~~~~~-~r~~~~E  443 (596)
                      +.+......   .... .+.....+                                    .++|+..+.++ +|+.++|
T Consensus        74 ~~d~~~e~~---~~~~-~~~~~~~~------------------------------------~lpdg~~i~i~~er~~~~E  113 (225)
T d2fxua2          74 ALDFENEMA---TAAS-SSSLEKSY------------------------------------ELPDGQVITIGNERFRCPE  113 (225)
T ss_dssp             CSSHHHHHH---HHHH-CSTTCEEE------------------------------------ECTTSCEEEESTHHHHHHH
T ss_pred             ccchhHHHh---hccc-CcccceeE------------------------------------ECCCCCEEEEchHhccccH
Confidence            865221100   0000 00000000                                    12233334343 6888999


Q ss_pred             CCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHhcCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhC
Q 007609          444 NFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI  522 (596)
Q Consensus       444 ~lf-p~~~g~~~~~~~~~~~~~~~~~~~~~~L~~aI~~sI~~~~~~d~r~~L~~nIvLvGG~S~i~Gf~~RL~~eL~~~~  522 (596)
                      .|| |...+                 ....||+++|.+||.+| |.|.|+.|++||+|+||+|++|||.+||++||..+.
T Consensus       114 ~lF~p~~~~-----------------~~~~gl~~~i~~sI~~~-~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~  175 (225)
T d2fxua2         114 TLFQPSFIG-----------------MESAGIHETTYNSIMKC-DIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA  175 (225)
T ss_dssp             TTTCGGGGT-----------------CCSCCHHHHHHHHHHTS-CHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHS
T ss_pred             hhcCccccC-----------------CccCChhHHHHHHhhcC-CcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhh
Confidence            999 54433                 35679999999999999 999999999999999999999999999999999998


Q ss_pred             CCCCCcceEEEcCCCCCCceeEEeceeeeeccCCcccceeeHHHHHhcCcceee
Q 007609          523 PSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGS  576 (596)
Q Consensus       523 p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wItr~EYee~G~~il~  576 (596)
                      |...++   ++.. +.+|++++|+||||+|+|++|+++||||+||+|+|++|||
T Consensus       176 ~~~~~~---~v~~-~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         176 PSTMKI---KIIA-PPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             CTTCCC---CEEC-CTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             ccccce---EEec-CCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            876543   4553 3589999999999999999999999999999999999986
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure