Citrus Sinensis ID: 007612

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590------
Protein Sequence
MDCLEICKEEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESNQDNFKV
Secondary Structure (PSIPRED)
cccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEcccEEccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccccccccccccEEcccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHcccccHcccccccccccccccEEHccEEEEEcccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHccc
Coil and Loop (DISEMBL)
mdcleickeekfkddgeehtldgsvdyygrpairaksggWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAflsdsywgrfktCAIFQGIFVIGLVLLSLSSYlflirprgcgneltpcgthsslEICLFYLSIYFVALgnggyqpniatfgadqydeedakeghskvAFFSYFYLALNLGslfsntilgyfedegmWALGFWVSTGSAFAALVLFLAGttryrhfkpsgnplARFCQVIVAATKKWRVHLsaegedlyvidandsstngnrnmlhthgfkfldraayissrdldeqkqgcsnpwrlcpvtqvEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKttvsnfrippasmssfdILSVAAFIFLYRRVIEPlaggirkknskgLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAkteckhcegasslsifwqvpqyalIGASEVFMYVAQLEffnaqapdglksFGSALCMTSISLGNYVSSLLLTMVMKIStedhmpgwvpgnlnkghlDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAesnqdnfkv
Flexible Loop (DISEMBL)
MDCLEICKEekfkddgeehtldgSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEaannvskwtGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPlaggirkknskglTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKcaesnqdnfkv
Low Complexity Region (SEG)
MDCLEICKEEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQgifviglvllslssylfliRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESNQDNFKV
Disordered region (IsUnstruct)
********************LDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYD******GHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDAND*****NRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKC**********
Disordered Region (DISOPRED)
************************VDYY**PA*****GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGC**********SSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEE*****HSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLY******************HGFKFLDRAAY******************LCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECK*CEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWY*******************
Disordered Region (DISEMBL)
MDCLEICKEEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISS********GCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCA*********
Disordered Region (DISPRO)
**C************GEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDS**NGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIEL**************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDCLEICKEEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESNQDNFKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	596	2.2.26 [Sep-21-2011]
Q9LQL2	614	Nitrate transporter 1.5 O	yes	no	0.981	0.952	0.777	0.0
Q8GXN2	589	Nitrate transporter 1.8 O	no	no	0.942	0.954	0.701	0.0
Q3E9B5	609	Putative peptide/nitrate	no	no	0.937	0.917	0.579	0.0
Q9M390	570	Peptide transporter PTR1	no	no	0.934	0.977	0.445	1e-139
P46032	585	Peptide transporter PTR2	no	no	0.921	0.938	0.429	1e-131
Q93Z20	590	Probable peptide/nitrate	no	no	0.912	0.922	0.421	1e-128
Q9LFB8	570	Peptide transporter PTR5	no	no	0.932	0.975	0.408	1e-127
Q84WG0	545	Probable peptide/nitrate	no	no	0.867	0.948	0.376	1e-110
Q9SZY4	577	Nitrate transporter 1.4 O	no	no	0.947	0.979	0.367	1e-104
Q9M1I2	555	Probable peptide/nitrate	no	no	0.892	0.958	0.367	1e-101

>sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/589 (77%), Positives = 518/589 (87%), Gaps = 4/589 (0%)

Query: 1   MDCLEICKEEKFKD-DGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFG 59
           M CLEI  ++  K  +GEE T DG+VDYYGRP+IR+ SG WVAGI+ILLNQGLATLAFFG
Sbjct: 1   MSCLEIYNKDTMKKKEGEEETRDGTVDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFG 60

Query: 60  VGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV 119
           VGVNLVLFLTRVLQQNNA+AANNVSKWTGTVYIFSLVGAFLSDSYWGR+KTCAIFQ IFV
Sbjct: 61  VGVNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFV 120

Query: 120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFG 179
           IGL  LSLSSY+FLIRPRGCG+E+TPCG+HS +EI +FY SIY +ALG GGYQPNIAT G
Sbjct: 121 IGLSSLSLSSYMFLIRPRGCGDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLG 180

Query: 180 ADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAA 239
           ADQ+DEE  KEG+SK+AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFW STGSA   
Sbjct: 181 ADQFDEEHPKEGYSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIG 240

Query: 240 LVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEG-EDLYVIDA--NDSSTN 296
           L+LFL GT RYR+FKP+GNPL+RFCQV+VAATKK  V     G E++Y  D+   ++S N
Sbjct: 241 LILFLVGTPRYRYFKPTGNPLSRFCQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVN 300

Query: 297 GNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCT 356
             R ++HT  FKFLD+AAYI++RDLD++KQ   NPWRLCPVTQVEEVKCILRL+PIWLCT
Sbjct: 301 TGRRIVHTDEFKFLDKAAYITARDLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCT 360

Query: 357 ILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGG 416
           I+YSVVFTQMASLFVEQGAAM T+VS+F+IPPASMSSFDILSVA FIFLYRRV+EP+A  
Sbjct: 361 IIYSVVFTQMASLFVEQGAAMNTSVSDFKIPPASMSSFDILSVALFIFLYRRVLEPVANR 420

Query: 417 IRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVP 476
            +K  SKG+TEL RMGIGLVIA++AM+AAGIVECYRLKYA   C HC+G+SSLSIFWQ P
Sbjct: 421 FKKNGSKGITELHRMGIGLVIAVIAMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAP 480

Query: 477 QYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTE 536
           QY+LIGASEVFMYV QLEFFNAQ PDGLKSFGSALCM S+S+GN+VSSLL+TMV+KISTE
Sbjct: 481 QYSLIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTE 540

Query: 537 DHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAK 585
           DHMPGW+P NLNKGHLDRFYFLLA LT++D VVYIACAKWYK I+LE K
Sbjct: 541 DHMPGWIPRNLNKGHLDRFYFLLAALTSIDLVVYIACAKWYKPIQLEGK 589

Low-affinity proton-dependent bidirectional nitrate transporter. Involved in nitrate loading into xylem and not in nitrate uptake. Not involved in histidine or dipeptides transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXN2|PTR47_ARATH Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/569 (70%), Positives = 467/569 (82%), Gaps = 7/569 (1%)

Query: 20  TLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEA 79
           T DGSVD +G PAIRA +G W+  I+IL+NQGLATLAFFGVGVNLVLFLTRV+ Q+NAEA
Sbjct: 12  TQDGSVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDNAEA 71

Query: 80  ANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGC 139
           ANNVSKWTGTVYIFSL+GAFLSDSYWGR+KTCAIFQ  FV GL++LSLS+   L+ P GC
Sbjct: 72  ANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEPSGC 131

Query: 140 GNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS 199
           G E +PC  HS+ +  LFYLS+Y +ALG GGYQPNIATFGADQ+D ED+ EGHSK+AFFS
Sbjct: 132 GVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIAFFS 191

Query: 200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNP 259
           YFYLALNLGSLFSNT+LGYFED+G W LGFW S GSAFA LVLFL GT +YRHF P  +P
Sbjct: 192 YFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPRESP 251

Query: 260 LARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSR 319
            +RFCQV+VAAT+K ++ +  E  +LY    +++   G++ +LHT GF+FLDRAA ++  
Sbjct: 252 WSRFCQVLVAATRKAKIDVHHEELNLY---DSETQYTGDKKILHTKGFRFLDRAAIVTPD 308

Query: 320 DLDEQKQGCS--NPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAM 377
           D  E+ +  S  +PWRLC VTQVEEVKC+LRLLPIWLCTILYSVVFTQMASLFV QGAAM
Sbjct: 309 DEAEKVESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQGAAM 368

Query: 378 KTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRK-KNSKGLTELQRMGIGLV 436
           KT + NFRIP +SMSSFDILSVA FIF YRR ++PL   + K + +KGLTELQRMGIGLV
Sbjct: 369 KTNIKNFRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMGIGLV 428

Query: 437 IAIVAMLAAGIVECYRLKYAKTE-CKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEF 495
           IAI+AM++AGIVE +RLK  + E       +S+LSIFWQVPQY LIGASEVFMYV QLEF
Sbjct: 429 IAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMYVGQLEF 488

Query: 496 FNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRF 555
           FN+QAP GLKSF SALCM SISLGNYVSSLL+++VMKIST D + GW+P NLNKGHL+RF
Sbjct: 489 FNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNKGHLERF 548

Query: 556 YFLLAGLTTVDFVVYIACAKWYKCIELEA 584
           YFLLAGLT  DFVVY+ CAKWYK I+ EA
Sbjct: 549 YFLLAGLTAADFVVYLICAKWYKYIKSEA 577

Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9B5|PTR51_ARATH Putative peptide/nitrate transporter At5g19640 OS=Arabidopsis thaliana GN=At5g19640 PE=2 SV=1

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/583 (57%), Positives = 414/583 (71%), Gaps = 24/583 (4%)

Query: 2   DCLEICKEEKFKDDGEEHTL---DGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFF 58
           + LE+ +  + +DD    +L   D  +          K+GGW   II+L+NQGLATLAFF
Sbjct: 22  ENLEVREVVEVQDDQSVVSLMSNDSDLQKKMMKKEEKKNGGWTNAIILLVNQGLATLAFF 81

Query: 59  GVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF 118
           GVGVNLVLFLTRV+ Q NAEAANNVSKWTGTVY+FSLVGAFLSDSYWGR+ TC IFQ IF
Sbjct: 82  GVGVNLVLFLTRVMGQGNAEAANNVSKWTGTVYMFSLVGAFLSDSYWGRYLTCTIFQVIF 141

Query: 119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATF 178
           VIG+ LLS  S+ FLI+PRGCG+    C   SSL + +FYLS+Y VA G GG+QP +ATF
Sbjct: 142 VIGVGLLSFVSWFFLIKPRGCGDGDLECNPPSSLGVAIFYLSVYLVAFGYGGHQPTLATF 201

Query: 179 GADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFA 238
           GADQ D++     +SK AFFSYFY ALN+G+LFSNTIL YFED+G+W  GF VS GSA  
Sbjct: 202 GADQLDDDK----NSKAAFFSYFYFALNVGALFSNTILVYFEDKGLWTEGFLVSLGSAIV 257

Query: 239 ALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGN 298
           ALV FLA T +YR+ KP GNPL R  QV VA  +KW V    +  +LY ++  +S+  G+
Sbjct: 258 ALVAFLAPTRQYRYVKPCGNPLPRVAQVFVATARKWSVVRPGDPHELYELEGPESAIKGS 317

Query: 299 RNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTIL 358
           R + H+  F FLDRAA I+  D +  +   SN WRLC VTQVEE KC+++LLPIWLCTI+
Sbjct: 318 RKIFHSTKFLFLDRAAVITENDRNGTR---SNAWRLCSVTQVEEAKCVMKLLPIWLCTII 374

Query: 359 YSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIR 418
           YSV+FTQMASLFVEQG  M   V  F IP ASMS FDI SV     +YR +I P    +R
Sbjct: 375 YSVIFTQMASLFVEQGDVMNAYVGKFHIPAASMSVFDIFSVFVSTGIYRHIIFPY---VR 431

Query: 419 KKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQY 478
                  TEL RMGIGL+I I+AM+AAG+ E  RLK      K  E    L+I WQ+PQY
Sbjct: 432 P------TELMRMGIGLIIGIMAMVAAGLTEIQRLKRVVPGQKESE----LTILWQIPQY 481

Query: 479 ALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTE-D 537
            L+GASEVFMYV QLEFFN QAPDGLK+ GS+LCM S++LGNYVSSL++ +VM I+   +
Sbjct: 482 VLVGASEVFMYVGQLEFFNGQAPDGLKNLGSSLCMASMALGNYVSSLMVNIVMAITKRGE 541

Query: 538 HMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCI 580
           + PGW+P NLN+GH+DRFYFL+A L  +DFVVY+  AKWY+ I
Sbjct: 542 NSPGWIPENLNEGHMDRFYFLIAALAAIDFVVYLIFAKWYQPI 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  496 bits (1276), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/568 (44%), Positives = 377/568 (66%), Gaps = 11/568 (1%)

Query: 14  DDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQ 73
           ++ + +T DG+VD +  PA + K+G W A   IL N+    LA++G+G NLV +L   L 
Sbjct: 2   EEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLN 61

Query: 74  QNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFL 133
           Q NA AANNV+ W+GT YI  L+GAF++D+Y GR+ T A F  I+V G+ LL+LS+ +  
Sbjct: 62  QGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPG 121

Query: 134 IRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHS 193
           ++P  C  +   C  +SS +  +F++++Y +ALG GG +P +++FGADQ+DE D  E   
Sbjct: 122 LKPGNCNAD--TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIK 178

Query: 194 KVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHF 253
           K +FF++FY ++N+G+L + T+L + +    W  GF V T +   A+  F  G+  YR  
Sbjct: 179 KSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQ 238

Query: 254 KPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRA 313
           +P G+PL R  QVIVAA +K  V +  +   L+    ++S+  G+R ++HT   KF D+A
Sbjct: 239 RPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKA 298

Query: 314 AYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQ 373
           A  S  D    K G  NPWRLC VTQVEE+K I+ LLP+W   I+++ V++QM+++FV Q
Sbjct: 299 AVESQSD--SIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQ 356

Query: 374 GAAMKTTV-SNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRK--KNSKGLTELQR 430
           G  M   +  NF IP AS+S FD +SV  +  +Y + I PLA   RK  +N +G T+LQR
Sbjct: 357 GNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLA---RKFTRNERGFTQLQR 413

Query: 431 MGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYV 490
           MGIGLV++I AM+ AG++E  RL Y KT   + +    +SIFWQ+PQY LIG +EVF ++
Sbjct: 414 MGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFI 473

Query: 491 AQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKG 550
            QLEFF  QAPD ++S  SAL +T+++LGNY+S++L+T+VMKI+ ++  PGW+P NLN+G
Sbjct: 474 GQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRG 533

Query: 551 HLDRFYFLLAGLTTVDFVVYIACAKWYK 578
           HLD F++LLA L+ ++F+VY+  +K YK
Sbjct: 534 HLDYFFYLLATLSFLNFLVYLWISKRYK 561

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  470 bits (1210), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/561 (42%), Positives = 358/561 (63%), Gaps = 12/561 (2%)

Query: 22  DGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAAN 81
           DGSVD+ G P ++ K+G W A   IL N+    LA++G+  NL+ +LT  L Q N  AA 
Sbjct: 27  DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAAT 86

Query: 82  NVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGN 141
           NV+ W GT Y+  L+GA L+D+YWGR+ T A F GI+ IG+  L+LS+ +  ++P  C  
Sbjct: 87  NVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIG 146

Query: 142 ELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF 201
           +  P  T +  +  +F+  +Y +ALG GG +P +++FGADQ+D+ D++E   K +FF++F
Sbjct: 147 DFCPSATPA--QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWF 204

Query: 202 YLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLA 261
           Y ++N+G+L S+++L + ++   W LGF + T     A+  F  GT  YR  KP G+P+ 
Sbjct: 205 YFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPIT 264

Query: 262 RFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDL 321
           R  QV+VA+ +K  V +  +   LY     +S+  G+R + HT   ++LD+AA IS    
Sbjct: 265 RISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISE--- 321

Query: 322 DEQKQG-CSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTT 380
           +E K G  SN WRLC VTQVEE+K ++R+ PIW   I++S V+ QM+++FV+QG AM   
Sbjct: 322 EESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCK 381

Query: 381 VSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKN--SKGLTELQRMGIGLVIA 438
           + +F++PPA++ +FD  SV  ++ LY R I PLA   RK     KG TE+QRMGIGL ++
Sbjct: 382 IGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLA---RKFTGVDKGFTEIQRMGIGLFVS 438

Query: 439 IVAMLAAGIVECYRLKYAKTECKHCEGAS-SLSIFWQVPQYALIGASEVFMYVAQLEFFN 497
           ++ M AA IVE  RL  A        GA   +S+ WQ+PQY ++GA+EVF ++ QLEFF 
Sbjct: 439 VLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFY 498

Query: 498 AQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYF 557
            Q+PD ++S  SAL + + +LGNY+SSL+LT+V   +T +   GW+  NLN GHLD F++
Sbjct: 499 DQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFW 558

Query: 558 LLAGLTTVDFVVYIACAKWYK 578
           LLAGL+ V+  VY   A  YK
Sbjct: 559 LLAGLSLVNMAVYFFSAARYK 579

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  459 bits (1180), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/562 (42%), Positives = 358/562 (63%), Gaps = 18/562 (3%)

Query: 22  DGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAAN 81
           DGS+D YG P  + K+G W A   IL N+    LA++G+  NL+ + T  L ++N  AA+
Sbjct: 38  DGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAAS 97

Query: 82  NVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGN 141
           +V  W GT YI  L+GA ++DSYWGR+ T A F  I+ IG+ LL+LS+ L +++P  C  
Sbjct: 98  DVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAG 157

Query: 142 ELTP-CGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY 200
                C   ++++  +F+  +Y +ALG GG +P +++FGADQ+D+ D +E   K +FF++
Sbjct: 158 VAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNW 217

Query: 201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPL 260
           FY ++N+GS  S+T+L + ++   W LGF + T     ++  F  GT  YR  KP G+P+
Sbjct: 218 FYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPI 277

Query: 261 ARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRD 320
            R CQV+VAA +K +++L  +   LY     +S   G+R + HT G+KFLD+AA IS   
Sbjct: 278 TRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEY- 336

Query: 321 LDEQKQGC-SNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKT 379
             E K G  SNPW+LC VTQVEEVK ++R+ PIW   I+YSV+++Q+++LFV+QG +M  
Sbjct: 337 --ESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNR 394

Query: 380 TVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKN--SKGLTELQRMGIGLVI 437
            + +F IPPAS   FD L V   I +Y R + P    +R+     KGLT+LQRMGIGL +
Sbjct: 395 IIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPF---VRRFTGIPKGLTDLQRMGIGLFL 451

Query: 438 AIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFN 497
           +++++ AA IVE  RL+ A+          ++SIFWQ+PQY L+G +EVF ++ ++EFF 
Sbjct: 452 SVLSIAAAAIVETVRLQLAQDFV-------AMSIFWQIPQYILMGIAEVFFFIGRVEFFY 504

Query: 498 AQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYF 557
            ++PD ++S  SAL + + ++G+Y+SSL+LT+V   +      GWVP +LNKGHLD F++
Sbjct: 505 DESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFW 564

Query: 558 LLAGLTTVDFVVY-IACAKWYK 578
           LL  L  V+  VY + C K  K
Sbjct: 565 LLVSLGLVNIPVYALICVKHTK 586

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  455 bits (1170), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/568 (40%), Positives = 363/568 (63%), Gaps = 12/568 (2%)

Query: 13  KDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVL 72
           +DD + +T DG++D + +PA + K+G W A   IL  +    LA++G+  NL+ +L + +
Sbjct: 2   EDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQM 61

Query: 73  QQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLF 132
              N  A+ +VS W+GT Y   L+GAF++D+Y GR+ T A F  I++ G+ LL++S+ + 
Sbjct: 62  NMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVP 121

Query: 133 LIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGH 192
            + P   G         +++     ++++Y +ALG GG +P +++FGADQ+D+ D KE  
Sbjct: 122 GLTPTCSGETCHATAGQTAIT----FIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKE 177

Query: 193 SKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRH 252
           SK +FF++FY  +N+G++ ++++L + +    W  G  V T +   A+V F AG+  YR 
Sbjct: 178 SKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRL 237

Query: 253 FKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDR 312
            KP G+PL R  QVIVA+ +K +V +  +   LY     +SS  G+R + HT    F D+
Sbjct: 238 QKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDK 297

Query: 313 AAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVE 372
           AA     + D +    S+ W+LC VTQVEE+K ++RLLPIW   I+++ V++QM ++FV 
Sbjct: 298 AAV--ETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVL 355

Query: 373 QGAAMKTTV-SNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRK--KNSKGLTELQ 429
           QG  +   +  NF+IP AS+S FD LSV  +  +Y ++I P A   RK   + +G T+LQ
Sbjct: 356 QGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFA---RKYTGHERGFTQLQ 412

Query: 430 RMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMY 489
           R+GIGLVI+I +M++AGI+E  RL Y +T   + E    ++IFWQVPQY L+G +EVF +
Sbjct: 413 RIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTF 472

Query: 490 VAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNK 549
           + QLEFF  QAPD ++S  SAL +T+I+ GNY+S+ L+T+V K++     PGW+  NLN 
Sbjct: 473 IGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNN 532

Query: 550 GHLDRFYFLLAGLTTVDFVVYIACAKWY 577
           GHLD F++LLAGL+ ++F+VY+  AKWY
Sbjct: 533 GHLDYFFWLLAGLSFLNFLVYLWIAKWY 560

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  400 bits (1028), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/568 (37%), Positives = 333/568 (58%), Gaps = 51/568 (8%)

Query: 8   KEEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLF 67
           +E   +++ + +  DGS+D +G P ++  +G W A   I  N+    LA++G+  NL+ +
Sbjct: 14  EESLIQEEVKLYAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITY 73

Query: 68  LTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSL 127
            T  L + N  AA +V  W GT YI  L+GA ++D+YWGR+ T A F  I+  G+V L+L
Sbjct: 74  FTNELHETNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTL 133

Query: 128 SSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEED 187
           S+ +  ++P  C   L P  T   ++  + +  +Y +ALG GG +P +++FGADQ+D+ D
Sbjct: 134 SASVPGLKPAECIGSLCPPATM--VQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTD 191

Query: 188 AKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGT 247
             E   K +FF++FY  +N+G+  S+T+L + ++   W LGF + T     A + F  GT
Sbjct: 192 PSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGT 251

Query: 248 TRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGF 307
             YR  KP G+P+   CQV+VAA +K  + +             DS+  G+ N       
Sbjct: 252 PLYRFQKPRGSPITSVCQVLVAAYRKSNLKV-----------PEDSTDEGDAN------- 293

Query: 308 KFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMA 367
                                +NPW+LC VTQVEEVK +LRL+PIW   I++SV+ +Q+ 
Sbjct: 294 ---------------------TNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIY 332

Query: 368 SLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKN--SKGL 425
           +LFV+QG  MK T+  F IPPA++  FD  SV   + +Y RVI PL   +R+    +KG 
Sbjct: 333 TLFVQQGRCMKRTIGLFEIPPATLGMFDTASVLISVPIYDRVIVPL---VRRFTGLAKGF 389

Query: 426 TELQRMGIGLVIAIVAMLAAGIVECYRLKYAKT-ECKHCEGASSLSIFWQVPQYALIGAS 484
           TELQRMGIGL ++++++  A IVE  RL+ A+  +         L+IFWQ+PQY L+G +
Sbjct: 390 TELQRMGIGLFVSVLSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTA 449

Query: 485 EVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVP 544
            VF +V ++EFF  Q+PD ++S  SA  + + +LGNY+SSL++T+V  +S +D    W+P
Sbjct: 450 GVFFFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLSGKD---CWIP 506

Query: 545 G-NLNKGHLDRFYFLLAGLTTVDFVVYI 571
             N+N GHLD F++LL  L +V+  V++
Sbjct: 507 SDNINNGHLDYFFWLLVSLGSVNIPVFV 534

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  380 bits (977), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/579 (36%), Positives = 347/579 (59%), Gaps = 14/579 (2%)

Query: 20  TLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEA 79
           T+  +VDY GRPA ++K+GGW+   +IL  + +  L+  G+ VNLV +L   +   ++ +
Sbjct: 8   TVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTS 67

Query: 80  ANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGC 139
           AN V+ + GT ++  L+G FL+DS+ GRFKT  IF  I  +G   L++++ L  +RP  C
Sbjct: 68  ANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTC 127

Query: 140 GNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS 199
            +    C   ++ ++ + Y+S+Y +ALG GG + +I+ FG+DQ+D++D KE      FF+
Sbjct: 128 -HHGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFFN 186

Query: 200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNP 259
            F+  +++G+L + T+L Y +DE   +  + + T S   A+V+FL GT RYR+ K  G+P
Sbjct: 187 RFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGSP 246

Query: 260 LARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSR 319
           + +  QVI AA +K ++ L      LY     + +  G R + HT  F  LD+AA ++  
Sbjct: 247 VVQIFQVIAAAFRKRKMELPQSIVYLY-----EDNPEGIR-IEHTDQFHLLDKAAIVAEG 300

Query: 320 DLDEQKQGCS--NPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAM 377
           D ++   G +  NPW+L  VT+VEEVK ++RLLPIW  TI++   + QM +  VEQ + M
Sbjct: 301 DFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTM 360

Query: 378 KTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVI 437
           +  + +F+IP  S++ F + ++   + +Y R I P     + K   G + LQR+ IGLV+
Sbjct: 361 RRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWK--KWKGKPGFSSLQRIAIGLVL 418

Query: 438 AIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFN 497
           +   M AA +VE  RL  AK+  +       +S+F  VPQ+ L+GA E F+Y  QL+FF 
Sbjct: 419 STAGMAAAALVEQKRLSVAKSSSQKTL---PISVFLLVPQFFLVGAGEAFIYTGQLDFFI 475

Query: 498 AQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYF 557
            Q+P G+K+  + L +T++SLG +VSS L+++V ++++     GW+  N+N G LD FY+
Sbjct: 476 TQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYW 535

Query: 558 LLAGLTTVDFVVYIACAKWYKCIELEAKCAESNQDNFKV 596
           LL  L+ ++FVVYI CA W+K  + +    + N   F V
Sbjct: 536 LLVILSGINFVVYIICALWFKPTKGKDSVEKENGKGFSV 574

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  371 bits (952), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/572 (36%), Positives = 329/572 (57%), Gaps = 40/572 (6%)

Query: 34  RAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIF 93
           +   GGW A + I++ +     AF+G+  NL+ FLT  L Q+ A AA N++ W G   +F
Sbjct: 10  KRTKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSCMF 69

Query: 94  SLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLE 153
            ++GAFL+DS  GRFKT  +   I+++G+V+L LS  +   R R                
Sbjct: 70  PILGAFLADSILGRFKTVLLTSFIYLLGIVMLPLSVTVVARRMREK-------------- 115

Query: 154 ICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSN 213
             +F++++Y +A+G GG++P + TF ADQ+ E +A+E  +K +FF+Y+Y+A+ L S  + 
Sbjct: 116 --VFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAV 173

Query: 214 TILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKK 273
             L + ++   W+LGF +  GS   A+V+FL G  +YR   P G+P  R  QV+VAA KK
Sbjct: 174 LALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKK 233

Query: 274 WRVH-------LSAEGEDLYVIDANDSSTNGNRNML--HTHGFKFLDRAAYISSRDLDEQ 324
           WR+        L  E ED + ++    STN N+  L   T+ F+FLD+A  I   D ++ 
Sbjct: 234 WRLSSTRHHYGLCYEEEDEHKLE----STNSNQVYLLARTNQFRFLDKATIIDEIDHNKN 289

Query: 325 KQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSN- 383
           +    NPWRLC V QVEEVK ILRL+PIW+  I++    TQ+ + F++QG+ M  T+ N 
Sbjct: 290 R----NPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNH 345

Query: 384 FRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAML 443
           F IPPA+  S   +++   I LY RV  P+   I   +S G+T LQR+G+GL +A   M+
Sbjct: 346 FTIPPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHS-GITSLQRIGVGLFVATFNMV 404

Query: 444 AAGIVECYRLKYAKTE--CKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAP 501
             G+VE  RLK A+        +    +S  W +PQY L+G  +VF  V   E F  Q P
Sbjct: 405 ICGLVEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMP 464

Query: 502 DGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAG 561
           + ++S G+A+ ++ + +G++VS+ +++ V  IS + H   W+  NLN+ HLD +Y+++A 
Sbjct: 465 ETMRSIGAAIFISVVGVGSFVSTGIISTVQTIS-KSHGEEWLVNNLNRAHLDYYYWIIAS 523

Query: 562 LTTVD--FVVYIACAKWYKCIELEAKCAESNQ 591
           L  V   F ++IA    YK ++ +    ES +
Sbjct: 524 LNAVSLCFYLFIANHFLYKKLQDKDDDVESER 555

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	596
224138864	591	predicted protein [Populus trichocarpa]	0.986	0.994	0.830	0.0
224126323	598	predicted protein [Populus trichocarpa]	1.0	0.996	0.812	0.0
255557635	598	Peptide transporter, putative [Ricinus c	1.0	0.996	0.836	0.0
449461529	602	PREDICTED: nitrate transporter 1.5-like	0.989	0.980	0.818	0.0
356513814	597	PREDICTED: nitrate transporter 1.5-like	1.0	0.998	0.815	0.0
356565426	597	PREDICTED: nitrate transporter 1.5-like	1.0	0.998	0.817	0.0
449511529	601	PREDICTED: nitrate transporter 1.5-like	0.986	0.978	0.807	0.0
357476727	668	Peptide transporter PTR1 [Medicago trunc	0.981	0.875	0.777	0.0
356495549	596	PREDICTED: nitrate transporter 1.5-like	0.984	0.984	0.787	0.0
30692706	614	nitrate transporter 1.5 [Arabidopsis tha	0.981	0.952	0.777	0.0

>gi|224138864|ref|XP_002326709.1| predicted protein [Populus trichocarpa] gi|222834031|gb|EEE72508.1| predicted protein [Populus trichocarpa]

 Score = 1037 bits (2682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/590 (83%), Positives = 546/590 (92%), Gaps = 2/590 (0%)

Query: 9   EEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFL 68
           + KFK+  EE T DG+VD++GRPAI+ KSG WVAGIIILLNQGLATLAFFGVGVNLVLFL
Sbjct: 2   QGKFKEGREECTFDGTVDWHGRPAIKDKSGQWVAGIIILLNQGLATLAFFGVGVNLVLFL 61

Query: 69  TRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLS 128
           TRVLQQ+NA+AANNVSKWTGTVYIFSLVGAFLSDSYWGR+KTCAIFQ IFVIGLV+LSLS
Sbjct: 62  TRVLQQSNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLVILSLS 121

Query: 129 SYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDA 188
           SYLFLIRP+GCGNELTPCG+HSS+E+ LFYLSIY VALGNGGYQPNIATFGADQ+DEED 
Sbjct: 122 SYLFLIRPKGCGNELTPCGSHSSMEVSLFYLSIYLVALGNGGYQPNIATFGADQFDEEDP 181

Query: 189 KEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTT 248
           +EGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEG+WALGFW S GSAFAALVLFL GT+
Sbjct: 182 REGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGVWALGFWASAGSAFAALVLFLGGTS 241

Query: 249 RYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGED-LYVIDANDSSTNGNRNMLHTHGF 307
           RYRHFKPSGNPL+RFCQVI+AA KKW++ +  +GE+ LY + A D S NGNR +LHT GF
Sbjct: 242 RYRHFKPSGNPLSRFCQVIIAAMKKWKLEMPRDGEEELYNVHAKDCSMNGNRKILHTDGF 301

Query: 308 KFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMA 367
           KFLDRAA+ISSRD+D+QK+GC NPWRLCP+TQVEEVKCILRLLPIWLCTI+YSVVFTQMA
Sbjct: 302 KFLDRAAFISSRDIDDQKRGCRNPWRLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQMA 361

Query: 368 SLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTE 427
           SLFVEQGAAMKTTVSNF+IPPASMSSFDILSVA FIFLYRRV++PL   ++K  SKGLTE
Sbjct: 362 SLFVEQGAAMKTTVSNFKIPPASMSSFDILSVAFFIFLYRRVLDPLVSRVKKTGSKGLTE 421

Query: 428 LQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVF 487
           LQRMG+GLVIAIVAM++AG+VECYRL+YA+ +C HCEG+SS+SIFWQVPQYALIGASEVF
Sbjct: 422 LQRMGVGLVIAIVAMISAGLVECYRLRYARKDCTHCEGSSSMSIFWQVPQYALIGASEVF 481

Query: 488 MYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNL 547
           MYV QLEFFNAQ PDGLKSFGSALCMTSISLGNYVSSLL+TMVMKISTEDHMPGW+PGNL
Sbjct: 482 MYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTEDHMPGWIPGNL 541

Query: 548 NKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESNQ-DNFKV 596
           NKGHLDRFYFLLA LTT+D VVYIACA+WYK I+LE KC  ++Q +NF+V
Sbjct: 542 NKGHLDRFYFLLATLTTIDLVVYIACARWYKSIQLEGKCELNDQEENFRV 591

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126323|ref|XP_002329526.1| predicted protein [Populus trichocarpa] gi|222870235|gb|EEF07366.1| predicted protein [Populus trichocarpa]

 Score = 1035 bits (2675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/598 (81%), Positives = 552/598 (92%), Gaps = 2/598 (0%)

Query: 1   MDCLEICKEEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGV 60
           M CLE+CKE+KFK+   E T DG+VD++GRPAI+AKSG W AGIIILLNQGLATLAFFGV
Sbjct: 1   MACLEVCKEDKFKEGEGECTFDGTVDWHGRPAIKAKSGQWAAGIIILLNQGLATLAFFGV 60

Query: 61  GVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI 120
           GVNLVLFLTRVLQQ+NA+AANNVSKWTGTVYIFSLVGAFLSDSYWGR+KTCA+FQ IFVI
Sbjct: 61  GVNLVLFLTRVLQQSNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAVFQVIFVI 120

Query: 121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGA 180
           GLV+LSL+S+LFLIRP+GCG+ELTPCG+HSS+E+ LFYLSIY +ALGNGGYQPNIATFGA
Sbjct: 121 GLVILSLASHLFLIRPKGCGDELTPCGSHSSMEVSLFYLSIYLIALGNGGYQPNIATFGA 180

Query: 181 DQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAAL 240
           DQ+DE+D +EG+SKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFW+S GSAFAAL
Sbjct: 181 DQFDEDDPREGYSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWMSAGSAFAAL 240

Query: 241 VLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGED-LYVIDANDSSTNGNR 299
           VLFL GT RYRHFKPSGNPL+RF QVI+AA KK RV +  +GE+ LY +D  D S NGNR
Sbjct: 241 VLFLGGTARYRHFKPSGNPLSRFGQVIIAAMKKCRVEMPPDGEEELYDVDRKDCSMNGNR 300

Query: 300 NMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILY 359
            +LHT GFKFLDRAA+ISSRD+D+QK+GC NPWRLCP+TQVEEVKCILRLLPIWLCTI+Y
Sbjct: 301 KILHTDGFKFLDRAAFISSRDIDDQKRGCRNPWRLCPITQVEEVKCILRLLPIWLCTIIY 360

Query: 360 SVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRK 419
           SVVFTQMASLFVEQGAAMKTT+SNF+IPPASMS+FDILSVA FIFLYRRV++PL    ++
Sbjct: 361 SVVFTQMASLFVEQGAAMKTTISNFKIPPASMSTFDILSVAFFIFLYRRVLDPLVSSFKQ 420

Query: 420 KNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYA 479
            +SKGLTELQRMG+GLVIAI+AM++AG+VECYRLKYA+ +CKHCEG+SSLSIFWQ PQYA
Sbjct: 421 TSSKGLTELQRMGVGLVIAIMAMVSAGLVECYRLKYARKDCKHCEGSSSLSIFWQAPQYA 480

Query: 480 LIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHM 539
           LIGASEVFMYV QLEFFNAQ PDGLKSFGSALCMTSISLGNYVSSLL+TMV+KISTEDHM
Sbjct: 481 LIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVTMVVKISTEDHM 540

Query: 540 PGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESN-QDNFKV 596
           PGW+PGNLN GHLDRFYFLLAGLTT+D VVY+ACA+WYK I+LE KC E++ ++NF+V
Sbjct: 541 PGWIPGNLNTGHLDRFYFLLAGLTTIDLVVYMACARWYKSIKLEKKCEENDHEENFRV 598

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557635|ref|XP_002519847.1| Peptide transporter, putative [Ricinus communis] gi|223540893|gb|EEF42451.1| Peptide transporter, putative [Ricinus communis]

 Score = 1026 bits (2654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/598 (83%), Positives = 546/598 (91%), Gaps = 2/598 (0%)

Query: 1   MDCLEICKEEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGV 60
           M CLE+ KE+K K D +E TLDG+VD++G+PA+R KSG WVAGIIILLNQGLATLAFFGV
Sbjct: 1   MACLEMYKEDKLKPDQDECTLDGTVDWHGQPAMRKKSGKWVAGIIILLNQGLATLAFFGV 60

Query: 61  GVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI 120
           GVNLVLFLTRVLQQNNA+AANNVSKWTGTVYIFSLVGAFLSDSYWGR+KTCAIFQ IFVI
Sbjct: 61  GVNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVI 120

Query: 121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGA 180
           GLV LSLSSYLFLIRP+GCG+ELTPCG+HSS+E+  FYLSIY VALGNGGYQPNIATFGA
Sbjct: 121 GLVFLSLSSYLFLIRPKGCGDELTPCGSHSSMEVGFFYLSIYLVALGNGGYQPNIATFGA 180

Query: 181 DQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAAL 240
           DQ+DEED KEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFW S GSA AAL
Sbjct: 181 DQFDEEDPKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSALAAL 240

Query: 241 VLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRN 300
            LFL GT RYRHFKP+GNPL+RFCQVI+AATKKW V++ ++ EDLY ++  D S NGNR 
Sbjct: 241 ALFLGGTARYRHFKPTGNPLSRFCQVIIAATKKWSVNMPSDAEDLYDVNGEDCSANGNRR 300

Query: 301 MLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYS 360
           +L+THGFKFLDRAA+ISSRD+DEQKQG  NPWRLCP+TQVEEVKCILRLLPIWLCTILYS
Sbjct: 301 ILYTHGFKFLDRAAFISSRDMDEQKQGSQNPWRLCPITQVEEVKCILRLLPIWLCTILYS 360

Query: 361 VVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKK 420
           VVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVA FIFLYRRV++PL   IR  
Sbjct: 361 VVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVALFIFLYRRVLDPLISRIRNS 420

Query: 421 NSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYAL 480
            SKGLTELQRMGIGLVIAI+AM++AGIVECYRLKYA  +C  CEG+SSLSIFWQVPQYAL
Sbjct: 421 KSKGLTELQRMGIGLVIAIMAMVSAGIVECYRLKYANKDCTRCEGSSSLSIFWQVPQYAL 480

Query: 481 IGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMP 540
           IGASEVFMYV QLEFFNAQ PDGLKSFGSALCMTSISLGNYVSSLL+TMVMKISTEDHMP
Sbjct: 481 IGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTEDHMP 540

Query: 541 GWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESN--QDNFKV 596
           GW+PGNLNKGHLDRFYFLLAGLTT+D VVY+ACA+WYKCI+LE K   +N  +DN +V
Sbjct: 541 GWIPGNLNKGHLDRFYFLLAGLTTIDLVVYMACARWYKCIKLEGKFDRNNNVEDNSEV 598

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461529|ref|XP_004148494.1| PREDICTED: nitrate transporter 1.5-like [Cucumis sativus] gi|449523169|ref|XP_004168597.1| PREDICTED: LOW QUALITY PROTEIN: nitrate transporter 1.5-like [Cucumis sativus]

 Score = 1017 bits (2630), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/595 (81%), Positives = 537/595 (90%), Gaps = 5/595 (0%)

Query: 2   DCLEICKEE----KFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAF 57
           +CLEIC E     + K++ E  TLDG++D++G+PAIR+KSGGWVAGIIILLNQGLATLAF
Sbjct: 3   NCLEICNENLQGGETKEEREVCTLDGTIDWHGQPAIRSKSGGWVAGIIILLNQGLATLAF 62

Query: 58  FGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI 117
           FGVGVNLVLFLTRVLQQNNA+AAN+VSKWTGTVYIFSLVGAFLSDSYWGR+KTCAIFQ I
Sbjct: 63  FGVGVNLVLFLTRVLQQNNADAANSVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQII 122

Query: 118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIAT 177
           FVIGLV LS++S LFLI+P+GCG+E TPC +HS L   LFYLSIY +ALGNGGYQPNIAT
Sbjct: 123 FVIGLVSLSITSQLFLIKPKGCGDEDTPCESHSRLGNALFYLSIYLIALGNGGYQPNIAT 182

Query: 178 FGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAF 237
           FGADQ+DEED+ EGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEG+WALGFWVS GSAF
Sbjct: 183 FGADQFDEEDSTEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGVWALGFWVSAGSAF 242

Query: 238 AALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNG 297
           AALVLFL G  RYRHFKPSGNPL+RFCQVIVAA KK  V + A G++LY +DA D S N 
Sbjct: 243 AALVLFLCGIPRYRHFKPSGNPLSRFCQVIVAAAKKSTVKMPASGDELYSLDAKDCSMNR 302

Query: 298 NRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTI 357
            R +LHTHGFKFLDRAAYISSRDLD Q +G  NPWRLCP+TQVEEVKCILRLLPIWLCTI
Sbjct: 303 GRRILHTHGFKFLDRAAYISSRDLDNQGRGIGNPWRLCPITQVEEVKCILRLLPIWLCTI 362

Query: 358 LYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGI 417
           +YSVVFTQMASLFVEQGAAMKT VSNF IPPASMSSFDILSVA FIFLYRRV++PLAG +
Sbjct: 363 IYSVVFTQMASLFVEQGAAMKTVVSNFHIPPASMSSFDILSVAVFIFLYRRVLDPLAGKL 422

Query: 418 RKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQ 477
           RK +SKGLTELQRMGIGL+IA++AM++AGIVECYRLKYAK +C HCEG+SSLSIFWQVPQ
Sbjct: 423 RKSDSKGLTELQRMGIGLIIAVMAMVSAGIVECYRLKYAKGDCTHCEGSSSLSIFWQVPQ 482

Query: 478 YALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTED 537
           YA IGASEVFMYV QLEFFNAQ PDGLKSFGSALCMTSISLGNYVSSLL+TMVMKISTED
Sbjct: 483 YAFIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTED 542

Query: 538 HMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESNQD 592
           HMPGW+PGNLN+GHLDRFYFLLAGLT +DF VYI CA+WYKCI+LE KC E N+D
Sbjct: 543 HMPGWIPGNLNRGHLDRFYFLLAGLTAIDFAVYIMCARWYKCIKLEGKC-EENED 596

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513814|ref|XP_003525604.1| PREDICTED: nitrate transporter 1.5-like [Glycine max]

 Score = 1008 bits (2607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/597 (81%), Positives = 543/597 (90%), Gaps = 1/597 (0%)

Query: 1   MDCLEICKEEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGV 60
           M CLE+ KE KFK D EE TLDGSVD++GRPAIRAKSG WVAG I+LLNQGLATLAFFGV
Sbjct: 1   MACLEVSKEGKFKGDTEELTLDGSVDWHGRPAIRAKSGRWVAGTIVLLNQGLATLAFFGV 60

Query: 61  GVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI 120
           GVNLVLFLTRV+ QNNA AAN+VSKWTGTVYIFSLVGAFLSDSYWGR+KTCAIFQ IFVI
Sbjct: 61  GVNLVLFLTRVMGQNNAAAANSVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVI 120

Query: 121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGA 180
           GLV LSLSSYL LIRP+GCGNE  PCG HSSLE+ +FYLSIY +ALGNGGYQPNIATFGA
Sbjct: 121 GLVSLSLSSYLSLIRPKGCGNETIPCGKHSSLEMGMFYLSIYLIALGNGGYQPNIATFGA 180

Query: 181 DQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAAL 240
           DQ+DEE +KEG+SKVAFFSYFYLALNLGSLFSNTILGYFEDEG+WALGFWVS GSAFAAL
Sbjct: 181 DQFDEEHSKEGYSKVAFFSYFYLALNLGSLFSNTILGYFEDEGLWALGFWVSAGSAFAAL 240

Query: 241 VLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRN 300
           VLFL GT RYRHFKPSGNPL+RF QV+VAA++KWR  +++ GEDLYV+D N+S TNGNR 
Sbjct: 241 VLFLLGTPRYRHFKPSGNPLSRFSQVLVAASRKWRAQMTSNGEDLYVMDENESPTNGNRK 300

Query: 301 MLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYS 360
           +LHT GFKFLDRAA+IS RDL++QK G  NPWRLCP+TQVEEVKCILRLLPIWLCTI+YS
Sbjct: 301 ILHTGGFKFLDRAAFISPRDLEDQKSGVYNPWRLCPITQVEEVKCILRLLPIWLCTIIYS 360

Query: 361 VVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKK 420
           VVFTQMASLFVEQGAAMKTT+SNFRIPPASMSSFDILSVA FIF YRRVI+PL G ++KK
Sbjct: 361 VVFTQMASLFVEQGAAMKTTISNFRIPPASMSSFDILSVAVFIFFYRRVIDPLVGRLKKK 420

Query: 421 NSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYAL 480
           +S+GLTELQRMGIGLVIA++AM++AGIVECYRLKYA + C HC G SSLSIFWQ+PQYAL
Sbjct: 421 SSRGLTELQRMGIGLVIAVMAMVSAGIVECYRLKYANSGCPHCSGTSSLSIFWQIPQYAL 480

Query: 481 IGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMP 540
           IGASEVFMYV QLEFFNAQ PDGLKSFGSALCMTSISLGNYVSS+L+++VMKISTEDHMP
Sbjct: 481 IGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSILVSIVMKISTEDHMP 540

Query: 541 GWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESNQD-NFKV 596
           GW+PGNLN+GHLDRFYFLLA LT++D V+YIACAKW+K I+LE K  E++   +FKV
Sbjct: 541 GWIPGNLNRGHLDRFYFLLAILTSIDLVLYIACAKWFKSIQLEGKYEENDMPGSFKV 597

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565426|ref|XP_003550941.1| PREDICTED: nitrate transporter 1.5-like [Glycine max]

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/597 (81%), Positives = 542/597 (90%), Gaps = 1/597 (0%)

Query: 1   MDCLEICKEEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGV 60
           M CLE+ KE KFK D EE TLDGSVD++GRPAIRAKSG WVAG I+LLNQGLATLAFFGV
Sbjct: 1   MACLEVSKEVKFKGDTEELTLDGSVDWHGRPAIRAKSGRWVAGTIVLLNQGLATLAFFGV 60

Query: 61  GVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI 120
           GVNLVLFLTRV+ Q+NAEAANNVSKWTGTVYIFSLVGAFLSDSYWGR+KTCAIFQ IFVI
Sbjct: 61  GVNLVLFLTRVMGQDNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVI 120

Query: 121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGA 180
           GLV LSLSSYL LIRP+GCGNE  PCG HSSLE+ +FYLSIY +ALGNGGYQPNIATFGA
Sbjct: 121 GLVSLSLSSYLSLIRPKGCGNETIPCGKHSSLEMGMFYLSIYLIALGNGGYQPNIATFGA 180

Query: 181 DQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAAL 240
           DQ+DEE +KEG+SKVAFFSYFYLALNLGSLFSNTILGYFEDEG+WALGFWVS GSAFAAL
Sbjct: 181 DQFDEEHSKEGYSKVAFFSYFYLALNLGSLFSNTILGYFEDEGLWALGFWVSAGSAFAAL 240

Query: 241 VLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRN 300
           VLFL GT RYRHFKPSGNPL+RF QV+VAA++KWR  +++ GEDLYV+D N+S TNGNR 
Sbjct: 241 VLFLLGTPRYRHFKPSGNPLSRFSQVLVAASRKWRAQMASNGEDLYVMDENESPTNGNRK 300

Query: 301 MLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYS 360
           +LHT GFKFLDRAA ISSRDL++QK G  NPWRLCP+TQVEEVKCILRLLPIWLCTI+YS
Sbjct: 301 ILHTEGFKFLDRAAIISSRDLEDQKSGVYNPWRLCPITQVEEVKCILRLLPIWLCTIIYS 360

Query: 361 VVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKK 420
           VVFTQMASLFVEQGAAMKTT+S+FRIPPASMSSFDILSVA FIF YRRVI+PL G ++KK
Sbjct: 361 VVFTQMASLFVEQGAAMKTTISHFRIPPASMSSFDILSVAVFIFFYRRVIDPLVGRLKKK 420

Query: 421 NSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYAL 480
           +SKGLTELQRMGIGLVIA++AM++AGIVECYRLKYA   C HC G SSL+IFWQ+PQY L
Sbjct: 421 SSKGLTELQRMGIGLVIAVMAMVSAGIVECYRLKYADPVCPHCSGTSSLTIFWQIPQYTL 480

Query: 481 IGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMP 540
           IGASEVFMYV QLEFFNAQ PDGLKSFGSALCMTSISLGNYVSSLL+++VMKISTEDHMP
Sbjct: 481 IGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVSIVMKISTEDHMP 540

Query: 541 GWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESNQD-NFKV 596
           GW+PGNLN+GHLDRFYFLLA LT++D V+YIACAKW+K I+LE K  E++   +FKV
Sbjct: 541 GWIPGNLNRGHLDRFYFLLAILTSIDLVLYIACAKWFKSIQLEGKYEENDMPGSFKV 597

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511529|ref|XP_004163981.1| PREDICTED: nitrate transporter 1.5-like [Cucumis sativus]

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/592 (80%), Positives = 532/592 (89%), Gaps = 4/592 (0%)

Query: 9   EEKFKDD---GEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLV 65
           + K K++    E  TLDG+VD++GRPAIR+KSG WVAGIIILLNQGLATLAFFGVGVNLV
Sbjct: 10  QSKLKEEIATAEGFTLDGTVDFHGRPAIRSKSGTWVAGIIILLNQGLATLAFFGVGVNLV 69

Query: 66  LFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLL 125
           LFLTRVLQQNNA+AANNVSKWTGTVYIFSLVGAFLSDSYWGR+KTCAIFQ IFVIGLV L
Sbjct: 70  LFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQIIFVIGLVSL 129

Query: 126 SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDE 185
           SLSS+LFLIRP+GCG+E TPCG+HS  EI LFYLSIY  ALGNGGYQPNIATFGADQ+DE
Sbjct: 130 SLSSHLFLIRPKGCGDEQTPCGSHSKTEISLFYLSIYLTALGNGGYQPNIATFGADQFDE 189

Query: 186 EDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA 245
           E  KEGHSKVAFFSYFYLALNLGSLFSNTILG+FEDEGMWALGFWVSTGSA AAL+LFL 
Sbjct: 190 EYQKEGHSKVAFFSYFYLALNLGSLFSNTILGFFEDEGMWALGFWVSTGSAAAALLLFLI 249

Query: 246 GTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTH 305
           GT RYR+FKP+GNPL R  QV+V+A KKWR+ + + GE L+  D  +SS NG R +LHTH
Sbjct: 250 GTPRYRYFKPTGNPLMRVSQVVVSAAKKWRIKVPSGGEGLFDDDGKESSNNGCRKILHTH 309

Query: 306 GFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQ 365
           GFKFLD+AAYISSRDL +++QG +NPWRLCP+TQVEEVKCILRLLPIWLCTI+YSVVFTQ
Sbjct: 310 GFKFLDKAAYISSRDLSDKEQGVNNPWRLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQ 369

Query: 366 MASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGL 425
           MASLFVEQGAAMKTTVSNF IPPASMSSFDILSVA FIFLYRRV++P  G ++K +S GL
Sbjct: 370 MASLFVEQGAAMKTTVSNFHIPPASMSSFDILSVALFIFLYRRVLDPFVGKLKKSSSTGL 429

Query: 426 TELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASE 485
           TELQRMG+GL+IA++AM++AGIVECYRLKYA+ +C HCEG+SSLSIFWQVPQYALIGASE
Sbjct: 430 TELQRMGVGLIIAVMAMVSAGIVECYRLKYAQADCTHCEGSSSLSIFWQVPQYALIGASE 489

Query: 486 VFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPG 545
           VFMYV QLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLL+TMVMKIST D MPGW+PG
Sbjct: 490 VFMYVGQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTVDRMPGWIPG 549

Query: 546 NLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAES-NQDNFKV 596
           NLNKGHLDRFYFLLA LT VDFV+YI CAKWYK I+LE K  ++  Q+NFKV
Sbjct: 550 NLNKGHLDRFYFLLAALTVVDFVIYIVCAKWYKSIKLEEKYEQTEEQENFKV 601

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476727|ref|XP_003608649.1| Peptide transporter PTR1 [Medicago truncatula] gi|355509704|gb|AES90846.1| Peptide transporter PTR1 [Medicago truncatula]

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/592 (77%), Positives = 520/592 (87%), Gaps = 7/592 (1%)

Query: 1   MDCLEICKEEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGV 60
           M CLE+CKE KFK++ EE TLDGSVD++GRP+IRA SG W AG IILLNQGLATLAFFGV
Sbjct: 77  MACLEVCKEGKFKEETEELTLDGSVDWHGRPSIRATSGRWFAGTIILLNQGLATLAFFGV 136

Query: 61  GVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI 120
           GVNLVLFLTRVL Q+NA AANNVSKWTGTVYIFSLVGAFLSDSYWGR+KTCAIFQGIFV 
Sbjct: 137 GVNLVLFLTRVLGQDNAAAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQGIFVT 196

Query: 121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGA 180
           GLV LS+++YL L+RP+GCGN    CG HSSLE+ +FYLSIY +ALGNGGYQPNIATFGA
Sbjct: 197 GLVSLSVTTYLALLRPKGCGNGKLECGEHSSLEMGMFYLSIYLIALGNGGYQPNIATFGA 256

Query: 181 DQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAAL 240
           DQ+DE+ +KE +SKVAFFSYFYLALNLGSLFSNTILGYFEDEG+WALGFW S GSAF AL
Sbjct: 257 DQFDEDHSKESYSKVAFFSYFYLALNLGSLFSNTILGYFEDEGLWALGFWASAGSAFLAL 316

Query: 241 VLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRN 300
           VLFL GT +YRHFKP GNPL+RFCQV  AA++K  V +++ G+DLYVID  +SS N NR 
Sbjct: 317 VLFLVGTPKYRHFKPCGNPLSRFCQVFFAASRKLGVQMTSNGDDLYVIDEKESSNNSNRK 376

Query: 301 MLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYS 360
           +LHTHGFKFLDRAAYI+SRDL+ QK G  NPW LCP+TQVEEVKCILRLLPIWLCTI+YS
Sbjct: 377 ILHTHGFKFLDRAAYITSRDLEVQKGGQHNPWYLCPITQVEEVKCILRLLPIWLCTIIYS 436

Query: 361 VVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKK 420
           VVFTQMASLFVEQGAAMKTT+S+F+IPPASMSSFDILSVA FIF YRRV++PL G ++K 
Sbjct: 437 VVFTQMASLFVEQGAAMKTTISSFKIPPASMSSFDILSVAIFIFFYRRVLDPLVGKLKKS 496

Query: 421 NSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYAL 480
           +SKGLTELQRMGIGLVIAI+AM+ AGIVECYRLKYAK         SSLSIFWQ+PQYAL
Sbjct: 497 SSKGLTELQRMGIGLVIAIIAMVTAGIVECYRLKYAKQ-----GDTSSLSIFWQIPQYAL 551

Query: 481 IGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMP 540
           IGASEVFMYV QLEFFNAQ PDGLKSFGSALCMTSISLGNYVSSL++++VMKISTEDHMP
Sbjct: 552 IGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLIVSIVMKISTEDHMP 611

Query: 541 GWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESNQD 592
           GW+PGNLN+GHLDRF+FLLA LT++D + YIACAKW++ I++   C   N D
Sbjct: 612 GWIPGNLNRGHLDRFFFLLAVLTSLDLIAYIACAKWFQNIQM--ACKYDNND 661

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495549|ref|XP_003516639.1| PREDICTED: nitrate transporter 1.5-like [Glycine max]

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/587 (78%), Positives = 525/587 (89%)

Query: 5   EICKEEKFKDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNL 64
           ++ KE KF+++ EE TLDGSVD++GRPAIRAKSG WVA IIILLNQ LATLAFFG+GVNL
Sbjct: 7   QVYKERKFEEESEEVTLDGSVDFHGRPAIRAKSGRWVAAIIILLNQALATLAFFGIGVNL 66

Query: 65  VLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVL 124
           VLFLTRV+ QNNA+AANNVSKWTGTVYIFSLVGAFLSDSYWGR+KTCA+FQ IFVIGL+ 
Sbjct: 67  VLFLTRVVGQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAVFQVIFVIGLMS 126

Query: 125 LSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYD 184
           LSLSSYLFL++P+GCGNE   CG HS LE+ +FYLSIY VALGNGGYQPNIATFGADQ+D
Sbjct: 127 LSLSSYLFLLKPKGCGNESVNCGKHSKLEMGMFYLSIYLVALGNGGYQPNIATFGADQFD 186

Query: 185 EEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFL 244
           EE +KEGH+KVAFFSYFYLA N+G LFSNTIL YFEDEGMWALGFW+S GSAFAALVLFL
Sbjct: 187 EEHSKEGHNKVAFFSYFYLAFNIGQLFSNTILVYFEDEGMWALGFWLSAGSAFAALVLFL 246

Query: 245 AGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHT 304
             T RYRHFKPSGNPL+RF QV+VAA++K +V +S+ GEDL+ +DA ++S N NR +LHT
Sbjct: 247 VCTPRYRHFKPSGNPLSRFSQVLVAASRKSKVQMSSNGEDLFNMDAKEASNNANRKILHT 306

Query: 305 HGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFT 364
           HGFKFLDRAA+ISSRDL +QK    NPWRLCPV+QVEEVKCILRLLPIWLCTI+YSVVFT
Sbjct: 307 HGFKFLDRAAFISSRDLGDQKGLGYNPWRLCPVSQVEEVKCILRLLPIWLCTIIYSVVFT 366

Query: 365 QMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKG 424
           QMASLFVEQGAAMKT VSNFRIPPASMSSFDILSVA FIF YRRV++P  G ++K +SKG
Sbjct: 367 QMASLFVEQGAAMKTKVSNFRIPPASMSSFDILSVAVFIFFYRRVLDPFVGKLKKTDSKG 426

Query: 425 LTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGAS 484
           LTELQRMG+GLVIA++AM++AG+VECYRLKYAK  C HC  +S+LSIFWQ+PQYA IGAS
Sbjct: 427 LTELQRMGVGLVIAVLAMVSAGLVECYRLKYAKQGCIHCNDSSTLSIFWQIPQYAFIGAS 486

Query: 485 EVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVP 544
           EVFMYV QLEFFNAQ PDGLKSFGSALCMTSISLGNYVSSLL+++VMKISTEDHMPGW+P
Sbjct: 487 EVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVSVVMKISTEDHMPGWIP 546

Query: 545 GNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESNQ 591
           GNLNKGHLDRFYFLLA LT++D + YIACAKWYK I+LEA   E ++
Sbjct: 547 GNLNKGHLDRFYFLLAALTSIDLIAYIACAKWYKSIQLEANTGEIDE 593

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30692706|ref|NP_174523.2| nitrate transporter 1.5 [Arabidopsis thaliana] gi|310947340|sp|Q9LQL2.2|PTR14_ARATH RecName: Full=Nitrate transporter 1.5 gi|332193367|gb|AEE31488.1| nitrate transporter 1.5 [Arabidopsis thaliana]

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/589 (77%), Positives = 518/589 (87%), Gaps = 4/589 (0%)

Query: 1   MDCLEICKEEKFKD-DGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFG 59
           M CLEI  ++  K  +GEE T DG+VDYYGRP+IR+ SG WVAGI+ILLNQGLATLAFFG
Sbjct: 1   MSCLEIYNKDTMKKKEGEEETRDGTVDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFG 60

Query: 60  VGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV 119
           VGVNLVLFLTRVLQQNNA+AANNVSKWTGTVYIFSLVGAFLSDSYWGR+KTCAIFQ IFV
Sbjct: 61  VGVNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFV 120

Query: 120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFG 179
           IGL  LSLSSY+FLIRPRGCG+E+TPCG+HS +EI +FY SIY +ALG GGYQPNIAT G
Sbjct: 121 IGLSSLSLSSYMFLIRPRGCGDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLG 180

Query: 180 ADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAA 239
           ADQ+DEE  KEG+SK+AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFW STGSA   
Sbjct: 181 ADQFDEEHPKEGYSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIG 240

Query: 240 LVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEG-EDLYVIDA--NDSSTN 296
           L+LFL GT RYR+FKP+GNPL+RFCQV+VAATKK  V     G E++Y  D+   ++S N
Sbjct: 241 LILFLVGTPRYRYFKPTGNPLSRFCQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVN 300

Query: 297 GNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCT 356
             R ++HT  FKFLD+AAYI++RDLD++KQ   NPWRLCPVTQVEEVKCILRL+PIWLCT
Sbjct: 301 TGRRIVHTDEFKFLDKAAYITARDLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCT 360

Query: 357 ILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGG 416
           I+YSVVFTQMASLFVEQGAAM T+VS+F+IPPASMSSFDILSVA FIFLYRRV+EP+A  
Sbjct: 361 IIYSVVFTQMASLFVEQGAAMNTSVSDFKIPPASMSSFDILSVALFIFLYRRVLEPVANR 420

Query: 417 IRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVP 476
            +K  SKG+TEL RMGIGLVIA++AM+AAGIVECYRLKYA   C HC+G+SSLSIFWQ P
Sbjct: 421 FKKNGSKGITELHRMGIGLVIAVIAMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAP 480

Query: 477 QYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTE 536
           QY+LIGASEVFMYV QLEFFNAQ PDGLKSFGSALCM S+S+GN+VSSLL+TMV+KISTE
Sbjct: 481 QYSLIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTE 540

Query: 537 DHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAK 585
           DHMPGW+P NLNKGHLDRFYFLLA LT++D VVYIACAKWYK I+LE K
Sbjct: 541 DHMPGWIPRNLNKGHLDRFYFLLAALTSIDLVVYIACAKWYKPIQLEGK 589

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	596
TAIR|locus:2033776	614	NRT1.5 "nitrate transporter 1.	0.981	0.952	0.752	9.9e-245
TAIR|locus:2119058	589	NRT1.8 "NITRATE TRANSPORTER 1.	0.951	0.962	0.686	8.3e-209
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.937	0.980	0.431	3.5e-123
TAIR|locus:2183194	609	AT5G19640 [Arabidopsis thalian	0.676	0.661	0.582	1.9e-122
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.924	0.941	0.415	2.6e-118
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.912	0.922	0.409	7.1e-116
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.931	0.973	0.404	2.5e-113
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.412	0.451	0.445	1.7e-103
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.944	0.975	0.366	3.4e-100
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.924	0.940	0.338	4.3e-93

TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)]

 Score = 2358 (835.1 bits), Expect = 9.9e-245, P = 9.9e-245
 Identities = 443/589 (75%), Positives = 502/589 (85%)

Query:     1 MDCLEICKEEKFKD-DGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFG 59
             M CLEI  ++  K  +GEE T DG+VDYYGRP+IR+ SG WVAGI+ILLNQGLATLAFFG
Sbjct:     1 MSCLEIYNKDTMKKKEGEEETRDGTVDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFG 60

Query:    60 VGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXX 119
             VGVNLVLFLTRVLQQNNA+AANNVSKWTGTVYIFSLVGAFLSDSYWGR+KTCAIFQ    
Sbjct:    61 VGVNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFV 120

Query:   120 XXXXXXXXXXXXXXXRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFG 179
                            RPRGCG+E+TPCG+HS +EI +FY SIY +ALG GGYQPNIAT G
Sbjct:   121 IGLSSLSLSSYMFLIRPRGCGDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLG 180

Query:   180 ADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAA 239
             ADQ+DEE  KEG+SK+AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFW STGSA   
Sbjct:   181 ADQFDEEHPKEGYSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIG 240

Query:   240 LVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEG-EDLYVIDAN--DSSTN 296
             L+LFL GT RYR+FKP+GNPL+RFCQV+VAATKK  V     G E++Y  D+   ++S N
Sbjct:   241 LILFLVGTPRYRYFKPTGNPLSRFCQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVN 300

Query:   297 GNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCT 356
               R ++HT  FKFLD+AAYI++RDLD++KQ   NPWRLCPVTQVEEVKCILRL+PIWLCT
Sbjct:   301 TGRRIVHTDEFKFLDKAAYITARDLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCT 360

Query:   357 ILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGG 416
             I+YSVVFTQMASLFVEQGAAM T+VS+F+IPPASMSSFDILSVA FIFLYRRV+EP+A  
Sbjct:   361 IIYSVVFTQMASLFVEQGAAMNTSVSDFKIPPASMSSFDILSVALFIFLYRRVLEPVANR 420

Query:   417 IRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVP 476
              +K  SKG+TEL RMGIGLVIA++AM+AAGIVECYRLKYA   C HC+G+SSLSIFWQ P
Sbjct:   421 FKKNGSKGITELHRMGIGLVIAVIAMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAP 480

Query:   477 QYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTE 536
             QY+LIGASEVFMYV QLEFFNAQ PDGLKSFGSALCM S+S+GN+VSSLL+TMV+KISTE
Sbjct:   481 QYSLIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTE 540

Query:   537 DHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAK 585
             DHMPGW+P NLNKGHLDRFYFLLA LT++D VVYIACAKWYK I+LE K
Sbjct:   541 DHMPGWIPRNLNKGHLDRFYFLLAALTSIDLVVYIACAKWYKPIQLEGK 589

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010167 "response to nitrate" evidence=IEP;RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA;IMP

GO:0042128 "nitrate assimilation" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009734 "auxin mediated signaling pathway" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2119058 NRT1.8 "NITRATE TRANSPORTER 1.8" [Arabidopsis thaliana (taxid:3702)]

 Score = 2019 (715.8 bits), Expect = 8.3e-209, P = 8.3e-209
 Identities = 394/574 (68%), Positives = 457/574 (79%)

Query:    20 TLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEA 79
             T DGSVD +G PAIRA +G W+  I+IL+NQGLATLAFFGVGVNLVLFLTRV+ Q+NAEA
Sbjct:    12 TQDGSVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDNAEA 71

Query:    80 ANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGC 139
             ANNVSKWTGTVYIFSL+GAFLSDSYWGR+KTCAIFQ                    P GC
Sbjct:    72 ANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEPSGC 131

Query:   140 GNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS 199
             G E +PC  HS+ +  LFYLS+Y +ALG GGYQPNIATFGADQ+D ED+ EGHSK+AFFS
Sbjct:   132 GVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIAFFS 191

Query:   200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNP 259
             YFYLALNLGSLFSNT+LGYFED+G W LGFW S GSAFA LVLFL GT +YRHF P  +P
Sbjct:   192 YFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPRESP 251

Query:   260 LARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSR 319
              +RFCQV+VAAT+K ++ +  E  +LY  D+    T G++ +LHT GF+FLDRAA ++  
Sbjct:   252 WSRFCQVLVAATRKAKIDVHHEELNLY--DSETQYT-GDKKILHTKGFRFLDRAAIVTPD 308

Query:   320 DLDEQKQGCS--NPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAM 377
             D  E+ +  S  +PWRLC VTQVEEVKC+LRLLPIWLCTILYSVVFTQMASLFV QGAAM
Sbjct:   309 DEAEKVESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQGAAM 368

Query:   378 KTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRK-KNSKGLTELQRMGIGLV 436
             KT + NFRIP +SMSSFDILSVA FIF YRR ++PL   + K + +KGLTELQRMGIGLV
Sbjct:   369 KTNIKNFRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMGIGLV 428

Query:   437 IAIVAMLAAGIVECYRLKYAKTE-CKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEF 495
             IAI+AM++AGIVE +RLK  + E       +S+LSIFWQVPQY LIGASEVFMYV QLEF
Sbjct:   429 IAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMYVGQLEF 488

Query:   496 FNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRF 555
             FN+QAP GLKSF SALCM SISLGNYVSSLL+++VMKIST D + GW+P NLNKGHL+RF
Sbjct:   489 FNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNKGHLERF 548

Query:   556 YFLLAGLTTVDFVVYIACAKWYKCIELEAKCAES 589
             YFLLAGLT  DFVVY+ CAKWYK I+ EA  +ES
Sbjct:   549 YFLLAGLTAADFVVYLICAKWYKYIKSEASFSES 582

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010167 "response to nitrate" evidence=IEP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
 Identities = 244/566 (43%), Positives = 364/566 (64%)

Query:    14 DDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQ 73
             ++ + +T DG+VD +  PA + K+G W A   IL N+    LA++G+G NLV +L   L 
Sbjct:     2 EEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLN 61

Query:    74 QNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXX 133
             Q NA AANNV+ W+GT YI  L+GAF++D+Y GR+ T A F                   
Sbjct:    62 QGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPG 121

Query:   134 XRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHS 193
              +P  C  +   C  +SS +  +F++++Y +ALG GG +P +++FGADQ+DE D  E   
Sbjct:   122 LKPGNCNADT--CHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIK 178

Query:   194 KVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHF 253
             K +FF++FY ++N+G+L + T+L + +    W  GF V T +   A+  F  G+  YR  
Sbjct:   179 KSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQ 238

Query:   254 KPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRA 313
             +P G+PL R  QVIVAA +K  V +  +   L+    ++S+  G+R ++HT   KF D+A
Sbjct:   239 RPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKA 298

Query:   314 AYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQ 373
             A + S+  D  K G  NPWRLC VTQVEE+K I+ LLP+W   I+++ V++QM+++FV Q
Sbjct:   299 A-VESQS-DSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQ 356

Query:   374 GAAMKTTVS-NFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMG 432
             G  M   +  NF IP AS+S FD +SV  +  +Y + I PLA    + N +G T+LQRMG
Sbjct:   357 GNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTR-NERGFTQLQRMG 415

Query:   433 IGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQ 492
             IGLV++I AM+ AG++E  RL Y KT   + +    +SIFWQ+PQY LIG +EVF ++ Q
Sbjct:   416 IGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQ 475

Query:   493 LEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHL 552
             LEFF  QAPD ++S  SAL +T+++LGNY+S++L+T+VMKI+ ++  PGW+P NLN+GHL
Sbjct:   476 LEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHL 535

Query:   553 DRFYFLLAGLTTVDFVVYIACAKWYK 578
             D F++LLA L+ ++F+VY+  +K YK
Sbjct:   536 DYFFYLLATLSFLNFLVYLWISKRYK 561

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2183194 AT5G19640 [Arabidopsis thaliana (taxid:3702)]

 Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
 Identities = 244/419 (58%), Positives = 291/419 (69%)

Query:    36 KSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSL 95
             K+GGW   II+L+NQGLATLAFFGVGVNLVLFLTRV+ Q NAEAANNVSKWTGTVY+FSL
Sbjct:    59 KNGGWTNAIILLVNQGLATLAFFGVGVNLVLFLTRVMGQGNAEAANNVSKWTGTVYMFSL 118

Query:    96 VGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCGNELTPCGTHSSLEIC 155
             VGAFLSDSYWGR+ TC IFQ                   +PRGCG+    C   SSL + 
Sbjct:   119 VGAFLSDSYWGRYLTCTIFQVIFVIGVGLLSFVSWFFLIKPRGCGDGDLECNPPSSLGVA 178

Query:   156 LFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTI 215
             +FYLS+Y VA G GG+QP +ATFGADQ D++     +SK AFFSYFY ALN+G+LFSNTI
Sbjct:   179 IFYLSVYLVAFGYGGHQPTLATFGADQLDDDK----NSKAAFFSYFYFALNVGALFSNTI 234

Query:   216 LGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWR 275
             L YFED+G+W  GF VS GSA  ALV FLA T +YR+ KP GNPL R  QV VA  +KW 
Sbjct:   235 LVYFEDKGLWTEGFLVSLGSAIVALVAFLAPTRQYRYVKPCGNPLPRVAQVFVATARKWS 294

Query:   276 VHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLC 335
             V    +  +LY ++  +S+  G+R + H+  F FLDRAA I+  D +  +   SN WRLC
Sbjct:   295 VVRPGDPHELYELEGPESAIKGSRKIFHSTKFLFLDRAAVITENDRNGTR---SNAWRLC 351

Query:   336 PVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFD 395
              VTQVEE KC+++LLPIWLCTI+YSV+FTQMASLFVEQG  M   V  F IP ASMS FD
Sbjct:   352 SVTQVEEAKCVMKLLPIWLCTIIYSVIFTQMASLFVEQGDVMNAYVGKFHIPAASMSVFD 411

Query:   396 ILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLK 454
             I SV     +YR +I P    +R       TEL RMGIGL+I I+AM+AAG+ E  RLK
Sbjct:   412 IFSVFVSTGIYRHIIFPY---VRP------TELMRMGIGLIIGIMAMVAAGLTEIQRLK 461

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
 Identities = 232/559 (41%), Positives = 344/559 (61%)

Query:    22 DGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAAN 81
             DGSVD+ G P ++ K+G W A   IL N+    LA++G+  NL+ +LT  L Q N  AA 
Sbjct:    27 DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAAT 86

Query:    82 NVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCGN 141
             NV+ W GT Y+  L+GA L+D+YWGR+ T A F                    +P  C  
Sbjct:    87 NVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIG 146

Query:   142 ELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF 201
             +  P  T +  +  +F+  +Y +ALG GG +P +++FGADQ+D+ D++E   K +FF++F
Sbjct:   147 DFCPSATPA--QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWF 204

Query:   202 YLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLA 261
             Y ++N+G+L S+++L + ++   W LGF + T     A+  F  GT  YR  KP G+P+ 
Sbjct:   205 YFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPIT 264

Query:   262 RFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDL 321
             R  QV+VA+ +K  V +  +   LY     +S+  G+R + HT   ++LD+AA IS    
Sbjct:   265 RISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISE--- 321

Query:   322 DEQKQG-CSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTT 380
             +E K G  SN WRLC VTQVEE+K ++R+ PIW   I++S V+ QM+++FV+QG AM   
Sbjct:   322 EESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCK 381

Query:   381 VSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIV 440
             + +F++PPA++ +FD  SV  ++ LY R I PLA      + KG TE+QRMGIGL ++++
Sbjct:   382 IGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVD-KGFTEIQRMGIGLFVSVL 440

Query:   441 AMLAAGIVECYRLKYAKTECKHCEGAS-SLSIFWQVPQYALIGASEVFMYVAQLEFFNAQ 499
              M AA IVE  RL  A        GA   +S+ WQ+PQY ++GA+EVF ++ QLEFF  Q
Sbjct:   441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500

Query:   500 APDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLL 559
             +PD ++S  SAL + + +LGNY+SSL+LT+V   +T +   GW+  NLN GHLD F++LL
Sbjct:   501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLL 560

Query:   560 AGLTTVDFVVYIACAKWYK 578
             AGL+ V+  VY   A  YK
Sbjct:   561 AGLSLVNMAVYFFSAARYK 579

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
 Identities = 230/562 (40%), Positives = 345/562 (61%)

Query:    22 DGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAAN 81
             DGS+D YG P  + K+G W A   IL N+    LA++G+  NL+ + T  L ++N  AA+
Sbjct:    38 DGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAAS 97

Query:    82 NVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGC-G 140
             +V  W GT YI  L+GA ++DSYWGR+ T A F                    +P  C G
Sbjct:    98 DVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAG 157

Query:   141 NELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY 200
                  C   ++++  +F+  +Y +ALG GG +P +++FGADQ+D+ D +E   K +FF++
Sbjct:   158 VAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNW 217

Query:   201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPL 260
             FY ++N+GS  S+T+L + ++   W LGF + T     ++  F  GT  YR  KP G+P+
Sbjct:   218 FYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPI 277

Query:   261 ARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRD 320
              R CQV+VAA +K +++L  +   LY     +S   G+R + HT G+KFLD+AA IS   
Sbjct:   278 TRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEY- 336

Query:   321 LDEQKQGC-SNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKT 379
               E K G  SNPW+LC VTQVEEVK ++R+ PIW   I+YSV+++Q+++LFV+QG +M  
Sbjct:   337 --ESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNR 394

Query:   380 TVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNS--KGLTELQRMGIGLVI 437
              + +F IPPAS   FD L V   I +Y R + P    +R+     KGLT+LQRMGIGL +
Sbjct:   395 IIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPF---VRRFTGIPKGLTDLQRMGIGLFL 451

Query:   438 AIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFN 497
             +++++ AA IVE  RL+ A       +   ++SIFWQ+PQY L+G +EVF ++ ++EFF 
Sbjct:   452 SVLSIAAAAIVETVRLQLA-------QDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFY 504

Query:   498 AQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYF 557
              ++PD ++S  SAL + + ++G+Y+SSL+LT+V   +      GWVP +LNKGHLD F++
Sbjct:   505 DESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFW 564

Query:   558 LLAGLTTVDFVVY-IACAKWYK 578
             LL  L  V+  VY + C K  K
Sbjct:   565 LLVSLGLVNIPVYALICVKHTK 586

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
 Identities = 230/569 (40%), Positives = 354/569 (62%)

Query:    13 KDDGEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVL 72
             +DD + +T DG++D + +PA + K+G W A   IL  +    LA++G+  NL+ +L + +
Sbjct:     2 EDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQM 61

Query:    73 QQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXX 132
                N  A+ +VS W+GT Y   L+GAF++D+Y GR+ T A F                  
Sbjct:    62 NMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVP 121

Query:   133 XXRPRGCGNELTPCGTHSSL-EICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEG 191
                P  C  E   C  H++  +  + ++++Y +ALG GG +P +++FGADQ+D+ D KE 
Sbjct:   122 GLTPT-CSGET--C--HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176

Query:   192 HSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYR 251
              SK +FF++FY  +N+G++ ++++L + +    W  G  V T +   A+V F AG+  YR
Sbjct:   177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236

Query:   252 HFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLD 311
               KP G+PL R  QVIVA+ +K +V +  +   LY     +SS  G+R + HT    F D
Sbjct:   237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFD 296

Query:   312 RAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFV 371
             +AA     + D +    S+ W+LC VTQVEE+K ++RLLPIW   I+++ V++QM ++FV
Sbjct:   297 KAAV--ETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFV 354

Query:   372 EQGAAMKTTVS-NFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKK--NSKGLTEL 428
              QG  +   +  NF+IP AS+S FD LSV  +  +Y ++I P A   RK   + +G T+L
Sbjct:   355 LQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFA---RKYTGHERGFTQL 411

Query:   429 QRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFM 488
             QR+GIGLVI+I +M++AGI+E  RL Y +T   + E    ++IFWQVPQY L+G +EVF 
Sbjct:   412 QRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFT 471

Query:   489 YVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLN 548
             ++ QLEFF  QAPD ++S  SAL +T+I+ GNY+S+ L+T+V K++     PGW+  NLN
Sbjct:   472 FIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLN 531

Query:   549 KGHLDRFYFLLAGLTTVDFVVYIACAKWY 577
              GHLD F++LLAGL+ ++F+VY+  AKWY
Sbjct:   532 NGHLDYFFWLLAGLSFLNFLVYLWIAKWY 560

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 1.7e-103, Sum P(2) = 1.7e-103
 Identities = 114/256 (44%), Positives = 171/256 (66%)

Query:   320 DLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKT 379
             D  ++    +NPW+LC VTQVEEVK +LRL+PIW   I++SV+ +Q+ +LFV+QG  MK 
Sbjct:   285 DSTDEGDANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKR 344

Query:   380 TVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKN--SKGLTELQRMGIGLVI 437
             T+  F IPPA++  FD  SV   + +Y RVI PL   +R+    +KG TELQRMGIGL +
Sbjct:   345 TIGLFEIPPATLGMFDTASVLISVPIYDRVIVPL---VRRFTGLAKGFTELQRMGIGLFV 401

Query:   438 AIVAMLAAGIVECYRLKYAKT-ECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFF 496
             +++++  A IVE  RL+ A+  +         L+IFWQ+PQY L+G + VF +V ++EFF
Sbjct:   402 SVLSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFF 461

Query:   497 NAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPG-NLNKGHLDRF 555
               Q+PD ++S  SA  + + +LGNY+SSL++T+V  +S +D    W+P  N+N GHLD F
Sbjct:   462 YEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLSGKDC---WIPSDNINNGHLDYF 518

Query:   556 YFLLAGLTTVDFVVYI 571
             ++LL  L +V+  V++
Sbjct:   519 FWLLVSLGSVNIPVFV 534

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 213/581 (36%), Positives = 339/581 (58%)

Query:    20 TLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEA 79
             T+  +VDY GRPA ++K+GGW+   +IL  + +  L+  G+ VNLV +L   +   ++ +
Sbjct:     8 TVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTS 67

Query:    80 ANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGC 139
             AN V+ + GT ++  L+G FL+DS+ GRFKT  IF                    RP  C
Sbjct:    68 ANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTC 127

Query:   140 GNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS 199
              +    C   ++ ++ + Y+S+Y +ALG GG + +I+ FG+DQ+D++D KE      FF+
Sbjct:   128 HHG-EACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFFN 186

Query:   200 YFYLALNLGSLFSNTILGYFEDE-GM-WALGFWVSTGSAFAALVLFLAGTTRYRHFKPSG 257
              F+  +++G+L + T+L Y +DE G  WA G  + T S   A+V+FL GT RYR+ K  G
Sbjct:   187 RFFFFISMGTLLAVTVLVYMQDEVGRSWAYG--ICTVSMAIAIVIFLCGTKRYRYKKSQG 244

Query:   258 NPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYIS 317
             +P+ +  QVI AA +K ++ L      LY     + +  G R + HT  F  LD+AA ++
Sbjct:   245 SPVVQIFQVIAAAFRKRKMELPQSIVYLY-----EDNPEGIR-IEHTDQFHLLDKAAIVA 298

Query:   318 SRDLDEQKQGCS--NPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGA 375
               D ++   G +  NPW+L  VT+VEEVK ++RLLPIW  TI++   + QM +  VEQ +
Sbjct:   299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358

Query:   376 AMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGL 435
              M+  + +F+IP  S++ F + ++   + +Y R I P     + K   G + LQR+ IGL
Sbjct:   359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWK--KWKGKPGFSSLQRIAIGL 416

Query:   436 VIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEF 495
             V++   M AA +VE  RL  AK+  +       +S+F  VPQ+ L+GA E F+Y  QL+F
Sbjct:   417 VLSTAGMAAAALVEQKRLSVAKSSSQK---TLPISVFLLVPQFFLVGAGEAFIYTGQLDF 473

Query:   496 FNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRF 555
             F  Q+P G+K+  + L +T++SLG +VSS L+++V ++++     GW+  N+N G LD F
Sbjct:   474 FITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYF 533

Query:   556 YFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESNQDNFKV 596
             Y+LL  L+ ++FVVYI CA W+K  + +    + N   F V
Sbjct:   534 YWLLVILSGINFVVYIICALWFKPTKGKDSVEKENGKGFSV 574

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 192/568 (33%), Positives = 333/568 (58%)

Query:    16 GEEHTLDGSVDYYGRPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQN 75
             G+++T DG+VD  G    R+++G W A   +++ +    +A++G+  NLV+++T  L Q 
Sbjct:     7 GDDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQG 66

Query:    76 NAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXR 135
               +++NNV+ W GT ++  ++GA+++D+++GR+ T  I                     +
Sbjct:    67 TVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLK 126

Query:   136 PRGCGN-ELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSK 194
             P  C    +  C   S +++ +F+ ++Y +A+G GG +PNI+T GADQ+DE D K+   K
Sbjct:   127 PPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHK 186

Query:   195 VAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVST-GSAFAALVLFLAGTTRYRHF 253
              +FF+++  ++  G+ F+ T+L Y +D   WA+G+ +ST G AF+ + +FL GT  YRH 
Sbjct:   187 HSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFS-IFIFLLGTRLYRHK 245

Query:   254 KPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRA 313
              P G+P  +  +VIVA+ +K R  +S++    Y +   + ++     +  T   +FL+RA
Sbjct:   246 LPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNRA 305

Query:   314 AYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQ 373
             +          K G ++ WRLC +T+VEE K +L++LP+   T + S++  Q+ +LF++Q
Sbjct:   306 SL---------KTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQ 356

Query:   374 GAAM-KTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMG 432
             G  + +   +NF IPPAS+  F   S+   I +Y RV       +   N +G+T LQRMG
Sbjct:   357 GTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTG-NPRGITLLQRMG 415

Query:   433 IGLVIAIVAMLAAGIVECYRLKYAKTE-CKHCEGAS-SLSIFWQVPQYALIGASEVFMYV 490
             IG+++ I+ M+ A I E YRLK A      H       LSIF  +PQY L+G ++ F+ +
Sbjct:   416 IGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEI 475

Query:   491 AQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKG 550
             A+LEFF  QAP+ +KS G++   TS+++G ++SS+LL+ V +I T+    GW+  NLN+ 
Sbjct:   476 AKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQI-TKKQGRGWIQNNLNES 534

Query:   551 HLDRFYFLLAGLTTVDFVVYIACAKWYK 578
              LD +Y   A L  ++F++++   ++Y+
Sbjct:   535 RLDNYYMFFAVLNLLNFILFLVVIRFYE 562

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQL2	PTR14_ARATH	No assigned EC number	0.7775	0.9815	0.9527	yes	no
Q8GXN2	PTR47_ARATH	No assigned EC number	0.7012	0.9429	0.9541	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	596
pfam00854	372	pfam00854, PTR2, POT family	6e-70
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	2e-32
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	3e-32
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	2e-13
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	2e-13
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	4e-06
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	9e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  230 bits (588), Expect = 6e-70
 Identities = 121/414 (29%), Positives = 180/414 (43%), Gaps = 47/414 (11%)

Query: 108 FKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALG 167
           FKT  +   I+ IG VLL+L +    + P                   LFY+ +Y +ALG
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQVA---------------LFYIGLYLIALG 45

Query: 168 NGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWAL 227
            GG +PN++ FGADQ+DE        +  FFS+FY ++N GSL +  I  Y +    + L
Sbjct: 46  TGGIKPNVSAFGADQFDETQDPR---RDGFFSWFYFSINAGSLIATIITPYLQQNVGYPL 102

Query: 228 GFWVSTGSAFAALVLFLAGTTRYRHFKPSGN--PLARFCQVIVAATKKWRVHLSAEGEDL 285
           GF +       AL++FL G+ RY+   P G          +I AA K  ++ L  +   L
Sbjct: 103 GFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWL 162

Query: 286 YVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKC 345
           Y      +  + ++  +HT       R A I               +       V  ++ 
Sbjct: 163 YWALEKYNKRSISQTKVHT-------RVAVIFIPLPKF-----WALF--DQQGSVWLLQA 208

Query: 346 ILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTV-SNFRIPPASMSSFDILSVAAFIF 404
           IL +LPIW   IL   ++TQ+A+L V Q   M   +   F IPPAS  SF+ L+V   + 
Sbjct: 209 ILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLP 268

Query: 405 LYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCE 464
           +   ++ PL      +  +GLT  QR G+G+ I IVA   A IVE  R +YA        
Sbjct: 269 ILDFLVYPLL-----RLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAA-LGLTS 322

Query: 465 G--ASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSI 516
                 L I W +P+  + G          LEF     P  + S  + L   + 
Sbjct: 323 PGWTVPLFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLLSAAAA 372

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  132 bits (333), Expect = 2e-32
 Identities = 110/430 (25%), Positives = 181/430 (42%), Gaps = 75/430 (17%)

Query: 57  FFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG 116
           ++G+   LVL+L   L  N   A N    +T   Y+  L+GA ++DS+ G+FKT      
Sbjct: 3   YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62

Query: 117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIA 176
           ++V+G  L SL +   L  P            H +L +    + +  +ALG GG +P ++
Sbjct: 63  VYVVGHALASLGAVPSLGHP-----------LHDALSL----VGLALIALGTGGIKPCVS 107

Query: 177 TFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTI-------LGYFEDEGMWALGF 229
            FG DQ++E           FFS+FY A+N GSLFS  I       +G F  +  + L F
Sbjct: 108 AFGGDQFEERQLSLRFR---FFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAF 164

Query: 230 WVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVID 289
            V       AL++F  G+  Y+   P GN +++  + IV A KK     S          
Sbjct: 165 GVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKRFRTRS---------- 214

Query: 290 ANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRL 349
                     +    H   +LD AA      +                  +   K +LR+
Sbjct: 215 ---------EDWPRLH---WLDWAAPKYLIRM------------------IRSTKRLLRV 244

Query: 350 LPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRV 409
           L +++   ++  +F Q  S +  Q   M   V  F I P  M + + L V   + ++  V
Sbjct: 245 LFLFIPLPMFWALFDQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYV 304

Query: 410 IEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSL 469
           + P       +     T L++M +G+++A +A   A +++    K   T     E ++S+
Sbjct: 305 VYPALAKCGTR----FTSLRKMAVGMLLAALAFAVAALLQ---NKINPT--LPEEPSASI 355

Query: 470 SIFWQVPQYA 479
            IF QV    
Sbjct: 356 -IFLQVLNTD 364

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  129 bits (327), Expect = 3e-32
 Identities = 93/479 (19%), Positives = 184/479 (38%), Gaps = 77/479 (16%)

Query: 56  AFFGVGVNLVLFLT----RVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTC 111
           +++G+   L+L+L       L  +   A    S +   VY+  ++G +L+D   G  +T 
Sbjct: 36  SYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95

Query: 112 AIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGY 171
            +   +  IG ++L++SS                            Y+ +  + +G G +
Sbjct: 96  VLGAILMAIGHLVLAISSVSGPG---------------------GLYIGLALIIVGTGLF 134

Query: 172 QPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWV 231
           +PNI++   + Y ++D      +   F+ FY+ +N+GSL +  I G       W +GF +
Sbjct: 135 KPNISSLLGELYPKDD----PRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190

Query: 232 STGSAFAALVLFLAGTTRYRHFKPSG-----NPLARFCQVIVAATKKWRVHLSAEGEDLY 286
           +       LV+FL G    RH K  G     NPL+    + V       V +        
Sbjct: 191 AAVGMIIGLVIFLLGR---RHVKGIGGVPDPNPLSFNFLLPVL---GGLVVMILAALLTL 244

Query: 287 VIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCI 346
           +++ N  S      ++           A+ S +  DE+++                   +
Sbjct: 245 LLNQNTFSGVL--LVISILIAIIYFAEAFRSPKVFDERRR-------------------L 283

Query: 347 LRLLPIWLCTILYSVVFTQMASLFVEQGAAMKT-TVSNFRIPPASMSSFDILSVAAFIFL 405
           L  +P++L  +++  ++ QM S             +  F +PPA   S +   +  F  +
Sbjct: 284 LAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPI 343

Query: 406 YRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEG 465
              +   L  G ++ ++       +  +GL++A +  L   +   +              
Sbjct: 344 LAALWTKLGRGNKQPSTPI-----KFALGLILAGLGFLILLLAGIWFGG----------P 388

Query: 466 ASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSS 524
           +  +S++W V  Y L    E+F+    L      AP  LKSF  A+   +++ G  +  
Sbjct: 389 SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGG 447

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 42/209 (20%), Positives = 87/209 (41%), Gaps = 28/209 (13%)

Query: 56  AFFGVGVNLVLFL--TRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAI 113
           +++G+   L ++L     L  +  +A      ++  VY+ + VG +  D  WG  KT  +
Sbjct: 25  SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84

Query: 114 FQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQP 173
              + ++G  +L++S Y                         L +  +  +A+G+G ++ 
Sbjct: 85  GGIVLMLGHFMLAMSIYPD-----------------------LIFYGLGTIAVGSGLFKA 121

Query: 174 NIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVST 233
           N ++     Y+  D      +   F+ FY+++N+GS  S  + G   +   + +GF ++ 
Sbjct: 122 NPSSMVGKLYERGDMPR---RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA 178

Query: 234 GSAFAALVLFLAGTTRYRHFKPSGNPLAR 262
                 L+ F AG    R      +PL+ 
Sbjct: 179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSG 207

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 72.3 bits (177), Expect = 2e-13
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 26/198 (13%)

Query: 55  LAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIF 114
            +F+G+   L+L+LT  L+ ++  A    S +   VY+  ++G FL+D   G     A+ 
Sbjct: 23  FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLG--NRMAVM 80

Query: 115 QGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPN 174
            G  ++ +  + L +           +E+ P            YLS+  +  G G ++ N
Sbjct: 81  LGALLMAIGHVVLGA-----------SEIHPS---------FLYLSLAIIVCGYGLFKSN 120

Query: 175 IATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTG 234
           ++    + Y+  D +        FS  Y A N+GS+ +    GY ++E  WA+GF ++  
Sbjct: 121 VSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176

Query: 235 SAFAALVLFLAGTTRYRH 252
              A LV+FL G   + H
Sbjct: 177 GMIAGLVIFLCGNRHFTH 194

Length = 493

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 17/111 (15%)

Query: 467 SSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLL 526
           +++SI WQ+PQY L  A EV   V  LEF  +QAP  +KS   AL + ++++GN +    
Sbjct: 548 NTVSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNII---- 603

Query: 527 LTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWY 577
              V+ I+  ++M                + L + L  V   ++   A  Y
Sbjct: 604 ---VLIIAEFENMA----------VQWAEFVLFSSLMLVVMAIFSILAYTY 641

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 36/189 (19%), Positives = 84/189 (44%), Gaps = 28/189 (14%)

Query: 57  FFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG 116
           ++G+   + ++L + L  + A++    S ++  VY    +G +L D   G  +   +   
Sbjct: 37  YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96

Query: 117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIA 176
           +  IG  L++ S +                      +  + Y+ +  +A+GNG ++ N +
Sbjct: 97  VLAIGYALVAWSGH----------------------DAGIVYMGMATIAVGNGLFKANPS 134

Query: 177 TFGADQYDEEDAK-EGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGS 235
           +  +  Y+++D + +G      F+ +Y+++N+GS FS     +   +  W++ F +S   
Sbjct: 135 SLLSTCYEKDDPRLDGA-----FTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG 189

Query: 236 AFAALVLFL 244
               +V F 
Sbjct: 190 MLITVVNFA 198

Length = 500

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 31/201 (15%)

Query: 44  IIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDS 103
           +++ L   L+ L    +   L L     L  + ++A   VS ++    + SL+  +LSD 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 104 YWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYF 163
           + GR +   +   +F +G +LL+ +S L+L                         +  + 
Sbjct: 61  F-GRRRVLLLGLLLFALGSLLLAFASSLWL-----------------------LLVGRFL 96

Query: 164 VALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEG 223
           + LG G   P  A   A+ +          +      F     LG+L    + G   +  
Sbjct: 97  LGLGGGALYPAAAALIAEWFPP------KERGRALGLFSAGFGLGALLGPLLGGLLAESL 150

Query: 224 MWALGFWVSTGSAFAALVLFL 244
            W   F +         +L L
Sbjct: 151 GWRWLFLILAILGLLLALLLL 171

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 29/201 (14%)

Query: 44  IIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDS 103
           +++ L   L +  ++G+   L L+L  VL  + AEA   +S +     + +L+G  LSD 
Sbjct: 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD- 236

Query: 104 YWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYF 163
             GR +   +  G+ +  L LL L+    L                      L  +++  
Sbjct: 237 RLGRRRLLLLI-GLLLAALGLLLLALAPSLA---------------------LLLVALLL 274

Query: 164 VALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEG 223
           +  G G   P + T  ++           ++      F    +LG      + G   D G
Sbjct: 275 LGFGLGFAFPALLTLASELAPP------EARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328

Query: 224 MWALGFWVSTGSAFAALVLFL 244
            +   F +    A  A +L L
Sbjct: 329 GYGGVFLILAALALLAALLLL 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 45/230 (19%), Positives = 68/230 (29%), Gaps = 30/230 (13%)

Query: 46  ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYW 105
           + L   LA L    +G  L L+L   L  +  E    ++ ++    +   +   LSD + 
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 106 GRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVA 165
            R         + +IGL+L +L   L L                S     L  +      
Sbjct: 61  RRR--------VLLIGLLLFALGLLLLL-------------FASSLW---LLLVLRVLQG 96

Query: 166 LGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMW 225
           LG G   P  A   AD +  E+      +            LG+     + G       W
Sbjct: 97  LGGGALFPAAAALIADWFPPEE------RGRALGLLSAGFGLGAALGPLLGGLLASLFGW 150

Query: 226 ALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWR 275
              F +    A  A VL      R         P       +V A K   
Sbjct: 151 RAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLL 200

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	596
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.94
PRK12382	392	putative transporter; Provisional	99.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.94
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.94
PRK11663	434	regulatory protein UhpC; Provisional	99.94
PRK10504	471	putative transporter; Provisional	99.94
PRK10054	395	putative transporter; Provisional	99.93
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.93
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.92
TIGR00893	399	2A0114 d-galactonate transporter.	99.92
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.92
PRK09705	393	cynX putative cyanate transporter; Provisional	99.92
PRK09874	408	drug efflux system protein MdtG; Provisional	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
KOG0569	485	consensus Permease of the major facilitator superf	99.92
PRK10642	490	proline/glycine betaine transporter; Provisional	99.92
PRK09952	438	shikimate transporter; Provisional	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.91
PRK12307	426	putative sialic acid transporter; Provisional	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
PLN00028	476	nitrate transmembrane transporter; Provisional	99.91
PRK03699	394	putative transporter; Provisional	99.91
TIGR00898	505	2A0119 cation transport protein.	99.91
PRK10091	382	MFS transport protein AraJ; Provisional	99.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.91
KOG0254	513	consensus Predicted transporter (major facilitator	99.9
PRK03893	496	putative sialic acid transporter; Provisional	99.9
PRK03633	381	putative MFS family transporter protein; Provision	99.9
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
PRK15011	393	sugar efflux transporter B; Provisional	99.9
TIGR00895	398	2A0115 benzoate transport.	99.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.89
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.89
PRK09528	420	lacY galactoside permease; Reviewed	99.89
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.89
KOG2532	466	consensus Permease of the major facilitator superf	99.88
PRK15075	434	citrate-proton symporter; Provisional	99.88
PRK11043	401	putative transporter; Provisional	99.88
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.88
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.87
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
PRK10133	438	L-fucose transporter; Provisional	99.87
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.87
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.86
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.86
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.86
PRK11010	491	ampG muropeptide transporter; Validated	99.86
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.85
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.85
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.85
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.84
PRK11902	402	ampG muropeptide transporter; Reviewed	99.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.83
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.82
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.82
TIGR00901	356	2A0125 AmpG-related permease.	99.81
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.81
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.8
PRK09848	448	glucuronide transporter; Provisional	99.8
PRK09669	444	putative symporter YagG; Provisional	99.78
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.78
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.78
PRK10429	473	melibiose:sodium symporter; Provisional	99.78
TIGR00805	633	oat sodium-independent organic anion transporter.	99.78
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.78
KOG2615	451	consensus Permease of the major facilitator superf	99.78
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.77
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.75
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.75
PF13347	428	MFS_2: MFS/sugar transport protein	99.74
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.73
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.72
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.71
KOG2533	495	consensus Permease of the major facilitator superf	99.7
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.69
PTZ00207	591	hypothetical protein; Provisional	99.69
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.68
PRK11462	460	putative transporter; Provisional	99.68
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.67
COG2211	467	MelB Na+/melibiose symporter and related transport	99.64
PRK10642	490	proline/glycine betaine transporter; Provisional	99.63
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.55
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.52
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.49
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.49
PRK15011	393	sugar efflux transporter B; Provisional	99.48
PRK09952	438	shikimate transporter; Provisional	99.48
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.47
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.45
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.43
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.43
PRK05122	399	major facilitator superfamily transporter; Provisi	99.42
KOG2563	480	consensus Permease of the major facilitator superf	99.41
PRK03699	394	putative transporter; Provisional	99.41
TIGR00893	399	2A0114 d-galactonate transporter.	99.41
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.4
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.39
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.39
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.39
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.39
PRK11663	434	regulatory protein UhpC; Provisional	99.39
PRK09705	393	cynX putative cyanate transporter; Provisional	99.37
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.36
PRK09874	408	drug efflux system protein MdtG; Provisional	99.36
PRK09528	420	lacY galactoside permease; Reviewed	99.36
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.36
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.35
TIGR00891	405	2A0112 putative sialic acid transporter.	99.33
PRK03545	390	putative arabinose transporter; Provisional	99.32
PRK10489	417	enterobactin exporter EntS; Provisional	99.32
PRK12382	392	putative transporter; Provisional	99.31
PRK03893	496	putative sialic acid transporter; Provisional	99.31
PRK15075	434	citrate-proton symporter; Provisional	99.31
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.31
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.31
PRK03633	381	putative MFS family transporter protein; Provision	99.29
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.29
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.27
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.27
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.27
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.26
PRK11010	491	ampG muropeptide transporter; Validated	99.24
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.24
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.23
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.23
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.22
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.22
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.22
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.21
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.21
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.2
PLN00028	476	nitrate transmembrane transporter; Provisional	99.19
PRK12307	426	putative sialic acid transporter; Provisional	99.18
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.17
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.16
PRK10504	471	putative transporter; Provisional	99.16
TIGR00900	365	2A0121 H+ Antiporter protein.	99.15
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.14
KOG2532	466	consensus Permease of the major facilitator superf	99.14
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.14
TIGR00895	398	2A0115 benzoate transport.	99.13
PRK10091	382	MFS transport protein AraJ; Provisional	99.13
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.13
KOG3626	735	consensus Organic anion transporter [Secondary met	99.13
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.11
PRK11902	402	ampG muropeptide transporter; Reviewed	99.09
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.09
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.09
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.08
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.06
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.06
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.04
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.02
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.99
PRK10133	438	L-fucose transporter; Provisional	98.98
PRK10054	395	putative transporter; Provisional	98.98
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.94
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.92
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.92
TIGR00901	356	2A0125 AmpG-related permease.	98.9
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.89
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.88
PF13347	428	MFS_2: MFS/sugar transport protein	98.87
PRK09848	448	glucuronide transporter; Provisional	98.84
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.84
KOG0569	485	consensus Permease of the major facilitator superf	98.83
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.83
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.82
PRK11043	401	putative transporter; Provisional	98.82
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.8
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.8
TIGR00898	505	2A0119 cation transport protein.	98.79
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.74
PRK10429	473	melibiose:sodium symporter; Provisional	98.74
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.73
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.7
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.66
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.65
KOG3762	618	consensus Predicted transporter [General function	98.64
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.62
PRK09669	444	putative symporter YagG; Provisional	98.62
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.61
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.59
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.56
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.48
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.45
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.4
KOG0637	498	consensus Sucrose transporter and related proteins	98.39
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.37
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.34
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.33
PRK11462	460	putative transporter; Provisional	98.32
COG0477	338	ProP Permeases of the major facilitator superfamil	98.27
COG2211	467	MelB Na+/melibiose symporter and related transport	98.24
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.19
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.18
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.17
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.15
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.13
KOG2533	495	consensus Permease of the major facilitator superf	98.12
TIGR00805	633	oat sodium-independent organic anion transporter.	98.05
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.04
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.01
PF12832	77	MFS_1_like: MFS_1 like family	97.99
KOG3762	618	consensus Predicted transporter [General function	97.96
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.95
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.92
KOG0254	513	consensus Predicted transporter (major facilitator	97.88
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.77
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.67
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.65
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.61
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.58
PTZ00207	591	hypothetical protein; Provisional	97.47
KOG2563	480	consensus Permease of the major facilitator superf	97.34
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.23
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.19
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.15
KOG2615	451	consensus Permease of the major facilitator superf	97.07
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.98
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.85
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.77
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.69
KOG3626	735	consensus Organic anion transporter [Secondary met	96.67
COG3202	509	ATP/ADP translocase [Energy production and convers	96.62
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.5
PRK03612	521	spermidine synthase; Provisional	96.41
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.21
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.11
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.99
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.95
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.92
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.24
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.08
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.07
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.51
KOG0637	498	consensus Sucrose transporter and related proteins	94.35
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.0
KOG3810	433	consensus Micronutrient transporters (folate trans	93.34
KOG3098	461	consensus Uncharacterized conserved protein [Funct	93.27
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	90.8
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	90.36
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	89.63
KOG3880	409	consensus Predicted small molecule transporter inv	85.95
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	85.81
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	85.09
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	84.91
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.69
KOG3097	390	consensus Predicted membrane protein [Function unk	83.69
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	82.74

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=3.9e-45  Score=398.08  Aligned_cols=545  Identities=44%  Similarity=0.721  Sum_probs=483.0

Q ss_pred             ccccCCCccccc---cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHH
Q 007612           24 SVDYYGRPAIRA---KSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFL  100 (596)
Q Consensus        24 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~l  100 (596)
                      ..++.+++..+.   +...|+....++..+.++..++|++...+..|+++.+|.+...+...+..+.......+++++++
T Consensus        17 ~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~l   96 (571)
T KOG1237|consen   17 SVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFL   96 (571)
T ss_pred             eeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344444444443   66888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCC--CCCCCchhHHHHHHHHHHHHHhccccccchhhh
Q 007612          101 SDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTP--CGTHSSLEICLFYLSIYFVALGNGGYQPNIATF  178 (596)
Q Consensus       101 aDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~  178 (596)
                      +|.|+||.+++.++.++..+|..++.+++..|.+.|+.|+.+.+.  |+.++......++.+..+.++|.|+..|+..++
T Consensus        97 aD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~f  176 (571)
T KOG1237|consen   97 ADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAF  176 (571)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhh
Confidence            999999999999999999999999999999999999998444443  777788888999999999999999999999999


Q ss_pred             hhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCC
Q 007612          179 GADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGN  258 (596)
Q Consensus       179 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (596)
                      .+|++++..+.+++.+...|.+++...++|..++..+..++.+..+|.+.|.+..+..++++++++...+.+++.+|.++
T Consensus       177 GadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gs  256 (571)
T KOG1237|consen  177 GADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGS  256 (571)
T ss_pred             cccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCC
Confidence            99999966655565677999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCcc
Q 007612          259 PLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVT  338 (596)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (596)
                      +...+.+++.++.+++....+.++..+ .     +.........+.+.++++|++++....|  +..+.+.+||+.|..+
T Consensus       257 p~t~i~~Vlvaa~~k~~~~~~~~~~~~-~-----~~~~~~~~~~~t~~f~~l~kaa~~~~~~--~~~~~~~~~w~lct~~  328 (571)
T KOG1237|consen  257 PKTRIGQVLVAAAFKRKAVVSLDPEEL-Y-----YDCTDSVAIEGTKPFRFLDKAALKTSDD--LKDGLDANPWRLCTVT  328 (571)
T ss_pred             chhHHHHHHHHHHHHHhccCCCcchhc-c-----ccccccccccCCcccchhhHhhccCCcc--cccccccCCccCCCce
Confidence            999999999999999988888775544 1     1112222334467889999998877665  2345567899999999


Q ss_pred             chhhhhhhhhhHHHHHHhHhHhhhhccccceeEeeeccccccccc-cccCCccccccchhhHHHHHHhhhhhhhcccccc
Q 007612          339 QVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSN-FRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGI  417 (596)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~  417 (596)
                      ++++.|.+++.++++...+.+++.+.|+.++++.|+..++.+.++ +.++++.+..+..+...+..|+.+++..|+.+|.
T Consensus       329 ~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~  408 (571)
T KOG1237|consen  329 QVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKL  408 (571)
T ss_pred             ehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhh
Confidence            999999999999999999999999999999999999999999987 9999999999999999999999999999999998


Q ss_pred             cccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007612          418 RKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFN  497 (596)
Q Consensus       418 ~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  497 (596)
                      . +++.+.+.++++.+|+++..+++...+.++..|.+....   +....++++++|++++|+++|++|.+..+..+++.+
T Consensus       409 t-~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~---~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY  484 (571)
T KOG1237|consen  409 T-GNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS---LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFY  484 (571)
T ss_pred             c-CCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhh---ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhH
Confidence            8 666788999999999999999999999999988877754   222346799999999999999999999999999999


Q ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCC-CCCCCchhhHHHHHHHHHHHHHHHHHHhhccc
Q 007612          498 AQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVP-GNLNKGHLDRFYFLLAGLTTVDFVVYIACAKW  576 (596)
Q Consensus       498 ~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~  576 (596)
                      +++|++||+.+++++.+...+|++++.+++..+...+.+  ..+|.+ +++|.+..+++||+++....++.+.+..+.++
T Consensus       485 ~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~  562 (571)
T KOG1237|consen  485 SQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKR  562 (571)
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEe
Confidence            999999999999999999999999999999988776543  447999 89999999999999999999999999999988


Q ss_pred             ccccch
Q 007612          577 YKCIEL  582 (596)
Q Consensus       577 ~~~~~~  582 (596)
                      ++.++.
T Consensus       563 y~~~~~  568 (571)
T KOG1237|consen  563 YDYKDD  568 (571)
T ss_pred             eeeccc
Confidence            876554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3.7e-34  Score=311.78  Aligned_cols=463  Identities=16%  Similarity=0.237  Sum_probs=324.1

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHH
Q 007612           36 KSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQ  115 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~  115 (596)
                      .++|||.++.+++.+++++.++|++..+++.|+++++|++..+++++.+.+.....+..+++|+++||++||||+++++.
T Consensus         9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~   88 (489)
T PRK10207          9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA   88 (489)
T ss_pred             hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999349999999999


Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          116 GIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      +++.++.++++++.+                      ....++++|+++++|.|...|+..++++|++|+++++    |.
T Consensus        89 ~~~~~g~~~~~~~~~----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~  142 (489)
T PRK10207         89 IVLAIGYFMTGMSLL----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LD  142 (489)
T ss_pred             HHHHHHHHHHHHhcc----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hh
Confidence            999999999887621                      1234668899999999999999999999999987521    67


Q ss_pred             hHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceecc--CCCCChhHHHHHHHH-----
Q 007612          196 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHF--KPSGNPLARFCQVIV-----  268 (596)
Q Consensus       196 ~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----  268 (596)
                      +++++++++.|+|..+||.+++++.++.||++.|++..+..+++++.+...++.+++.  +|++++.+ ..+.+.     
T Consensus       143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~l~~~~~  221 (489)
T PRK10207        143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMS-FSKLLLVLLGS  221 (489)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchh-hhhHHHHHHHH
Confidence            8899999999999999999999999999999999997766655555555555444332  22222221 111100     


Q ss_pred             --HHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhh
Q 007612          269 --AATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCI  346 (596)
Q Consensus       269 --~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (596)
                        ........  .+... .                   ...-......+....-..++.          ..++. .+++.
T Consensus       222 ~~~~~~~~~~--~~~~~-~-------------------~~~~~~~~~~i~~~~f~~~~~----------~~~~~-~r~r~  268 (489)
T PRK10207        222 VVMIFVCAWL--MHNVE-V-------------------ANLVLIVLSIVVTIIFFREAF----------KLDKT-GRNKM  268 (489)
T ss_pred             HHHHHHHHHH--Hhhhh-H-------------------HHHHHHHHHHHHHHHHHHHHh----------cCCHH-HHHHH
Confidence              00000000  00000 0                   000000000000000000000          00111 23444


Q ss_pred             hhhHHHHHHhHhHhhhhccccceeEeeec-cccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCC
Q 007612          347 LRLLPIWLCTILYSVVFTQMASLFVEQGA-AMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGL  425 (596)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~  425 (596)
                      +....++.....++..+.|..+.+..+.. +.+....|+.++++.++++|++..++..|+.+++..|+.+|     +.++
T Consensus       269 ~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r-----~~~~  343 (489)
T PRK10207        269 FVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSK-----GKDL  343 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC-----CCCC
Confidence            44555666677888888887655443332 34445557777888889999999999999998766555333     2345


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhH
Q 007612          426 TELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLK  505 (596)
Q Consensus       426 ~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~r  505 (596)
                      +...++.+|+++.+++++.++......   ...       ....+.+|+++.+++.++||.+..|+.++++.+.+|++++
T Consensus       344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~-------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~  413 (489)
T PRK10207        344 SMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA-------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLM  413 (489)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC-------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH
Confidence            688899999999998887654322110   000       1135678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 007612          506 SFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKC  579 (596)
Q Consensus       506 g~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~  579 (596)
                      |.++|++++.+++|+.+|..+...... ..+.    .-|. .....+.++|...++.+++..++++++.++.++
T Consensus       414 g~~~g~~~l~~~ig~~lg~~l~~~~~~-~~~~----~~~~-~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~  481 (489)
T PRK10207        414 GFILGMWFLTQAAAFLLGGYVATFTAV-PDNI----TDPL-ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNR  481 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-cccc----ccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888774421 0000    0000 012346778888888888888888777665543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-35  Score=307.01  Aligned_cols=461  Identities=20%  Similarity=0.322  Sum_probs=348.4

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchH
Q 007612           34 RAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQ----QNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFK  109 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg----~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~  109 (596)
                      ....+|||.++.+++.+++|+++||++...+..|++.+++    +|.+++..+.+.+....++.++++||++||++|+|+
T Consensus        14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~   93 (498)
T COG3104          14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR   93 (498)
T ss_pred             cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence            3456799999999999999999999999999999998887    999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccc
Q 007612          110 TCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAK  189 (596)
Q Consensus       110 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  189 (596)
                      ++..+.++.++|.+.++...                     ......++++..++++|+|.+.|+..++++|++|+++++
T Consensus        94 tI~lGail~~iGh~~L~~~~---------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr  152 (498)
T COG3104          94 TIVLGAILMAIGHLVLAISS---------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR  152 (498)
T ss_pred             HHHHHHHHHHHHHHHHhccc---------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence            99999999999999998762                     012566889999999999999999999999999998855


Q ss_pred             cccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCC--CCChh------H
Q 007612          190 EGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKP--SGNPL------A  261 (596)
Q Consensus       190 ~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~  261 (596)
                          |..+++++|++.|+|+.++|++.+++.+.+||+..|..+++.+.++++.++..+++......  ..++.      .
T Consensus       153 ----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~  228 (498)
T COG3104         153 ----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP  228 (498)
T ss_pred             ----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence                77899999999999999999999999999999999999999999999988888877655432  11111      1


Q ss_pred             HHHHHHHHHHHhh--ccccCCCcccchhcccCCCCCCCCCccccccccchh-hhhhhhccccccccccCCCCCCcccCcc
Q 007612          262 RFCQVIVAATKKW--RVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFL-DRAAYISSRDLDEQKQGCSNPWRLCPVT  338 (596)
Q Consensus       262 ~~~~~~~~~~~~~--~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (596)
                      .....+.......  ...         ..                +..... ....+....    ..-....+|   .+.
T Consensus       229 ~~~~~~~~~~~~~~~~~l---------~~----------------~~~~~~~~~~~i~~~~----~~~~~~~~~---~~~  276 (498)
T COG3104         229 VLGGLVVMILAALLTLLL---------NQ----------------NTFSGVLLVISILIAI----IYFAEAFRS---PKV  276 (498)
T ss_pred             hHHHHHHHHHHHHHHHHH---------HH----------------HHHHHHHHHHHHHHHH----HHHHHHhcc---Ccc
Confidence            1111111111100  000         00                000000 000000000    000000111   112


Q ss_pred             chhhhhhhhhhHHHHHHhHhHhhhhccccceeEeee-ccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccc
Q 007612          339 QVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQG-AAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGI  417 (596)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~  417 (596)
                      . .++|+++..+++++..++||..+.|.++.+..+. ...+.+..|+++++++++++|++..++++|+.++++.|+.++.
T Consensus       277 ~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~  355 (498)
T COG3104         277 F-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN  355 (498)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC
Confidence            2 5788899999999999999999999998665544 3333443458899999999999999999999999998876653


Q ss_pred             cccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007612          418 RKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFN  497 (596)
Q Consensus       418 ~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  497 (596)
                           +.++...++..|+.+++.+++.+......   .+.       ..+..+.+|+++.|++.++||-+..|...+++.
T Consensus       356 -----~~ps~~~KFalGl~l~g~~fl~l~~~~~~---~~~-------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t  420 (498)
T COG3104         356 -----KQPSTPIKFALGLILAGLGFLILLLAGIW---FGG-------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVT  420 (498)
T ss_pred             -----CCCCcchHHHHHHHHHHHHHHHHHHHHHh---hcC-------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence                 23458889999999999999887765322   010       034578999999999999999999999999999


Q ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 007612          498 AQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWY  577 (596)
Q Consensus       498 ~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~  577 (596)
                      +.+|+++++..+|++.+....|+.++..+.+.-.. + +        ...+......+|+..+...++..+......++.
T Consensus       421 ~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~-~--------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~  490 (498)
T COG3104         421 KLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T-D--------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKL  490 (498)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c-c--------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999999999988888887766662111 0 0        012233445678888888887777666655554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=3e-33  Score=304.31  Aligned_cols=452  Identities=16%  Similarity=0.234  Sum_probs=326.1

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHH
Q 007612           36 KSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRV--LQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAI  113 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~  113 (596)
                      ..+++|.++.+++.+++++.++|++.++++.|++++  +|++..+++++.+.+.++..++++++|+++||++|||+++++
T Consensus         5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~   84 (475)
T TIGR00924         5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL   84 (475)
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence            346888999999999999999999999999999987  999999999999999999999999999999993399999999


Q ss_pred             HHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccc
Q 007612          114 FQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHS  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  193 (596)
                      +.++.+++.++++++   +                    +...+++++++.|+|.|...|+..++++|++|+++.+   .
T Consensus        85 ~~~~~~~g~~~~~~~---~--------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~  138 (475)
T TIGR00924        85 GGIVLMLGHFMLAMS---I--------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---R  138 (475)
T ss_pred             HHHHHHHHHHHHHhc---c--------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---c
Confidence            999999998888876   2                    2566788999999999999999999999999875411   1


Q ss_pred             hhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhH----HH-H----
Q 007612          194 KVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLA----RF-C----  264 (596)
Q Consensus       194 r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~----  264 (596)
                      |++++++++++.|+|.++||.+++++.+..||++.|++.++..+++.+.++...+.+++.++++++..    +. .    
T Consensus       139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (475)
T TIGR00924       139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA  218 (475)
T ss_pred             ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence            77899999999999999999999999998899999999886666665555555544433322111110    00 0    


Q ss_pred             --HHHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchh-hhhhhhccccccccccCCCCCCcccCccchh
Q 007612          265 --QVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFL-DRAAYISSRDLDEQKQGCSNPWRLCPVTQVE  341 (596)
Q Consensus       265 --~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (596)
                        ..+....+..... .....                    .+..... .....+....    .  ...|.    .+. .
T Consensus       219 ~~~~~~~~~~~~~~~-~~~~~--------------------~~~~~~~~~~~~~~~~~~----~--~~~~~----~~~-~  266 (475)
T TIGR00924       219 LLAALALVFFCAWLM-HHVVI--------------------ANILLMTVTLAVIIFFFR----L--AFKPR----LDA-V  266 (475)
T ss_pred             HHHHHHHHHHHHHHH-hccHH--------------------HHHHHHHHHHHHHHHHHH----H--HHhcc----CCH-H
Confidence              0000001110000 00000                    0000000 0000000000    0  00010    011 2


Q ss_pred             hhhhhhhhHHHHHHhHhHhhhhccccceeE-eeeccccccccccccCCccccccchhhHHHHHHhhhhhhhccccccccc
Q 007612          342 EVKCILRLLPIWLCTILYSVVFTQMASLFV-EQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKK  420 (596)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~  420 (596)
                      ++++....+++++...+++..+.|..+.+. .+...++..++++.++++.+.++|++..++..|+.+.+..++.+|.   
T Consensus       267 ~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~---  343 (475)
T TIGR00924       267 ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG---  343 (475)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC---
Confidence            234445567788888899999999887543 3334466666778888999999999999999999987665554441   


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcC
Q 007612          421 NSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQA  500 (596)
Q Consensus       421 ~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  500 (596)
                        .+.+...++.+|+++.+++++.+++....    ...       ..+.+.+|+++.+++.++||.+..|..++++++.+
T Consensus       344 --~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~-------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~a  410 (475)
T TIGR00924       344 --KDPTTPLKFTLGMLFCGASFLTFAASIWF----ADA-------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIA  410 (475)
T ss_pred             --CCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC-------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence              22346678899999999999887764211    110       12468899999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 007612          501 PDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWY  577 (596)
Q Consensus       501 P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~  577 (596)
                      |++.||+++|++.+...+|+.+++.+......                ..++..+|...++++++..++++++.+..
T Consensus       411 P~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (475)
T TIGR00924       411 PQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV----------------PQGVTGVFGKIGLVTLLVGVVMALMVPWL  471 (475)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888775432                12344567777777777777777766554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=2.3e-32  Score=299.11  Aligned_cols=458  Identities=16%  Similarity=0.268  Sum_probs=320.7

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHH
Q 007612           36 KSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQ  115 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~  115 (596)
                      ..+++|.++.+++..++++..+|++.++++.|+++++|++..+++++.+.+........+++|+++||++|||++++++.
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~   95 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA   95 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            34678889999999999999999999999999999999999999999988887777777899999999339999999999


Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          116 GIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      ++..++.+++.++.                      .+...++++++++|+|.|...++..+++.+++|+++++    |.
T Consensus        96 ~~~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~  149 (500)
T PRK09584         96 IVLAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LD  149 (500)
T ss_pred             HHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hh
Confidence            99999988887651                      12455678889999999999999999999999876522    55


Q ss_pred             hHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceecc--CCCCChhHHH------HHHH
Q 007612          196 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHF--KPSGNPLARF------CQVI  267 (596)
Q Consensus       196 ~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~  267 (596)
                      .++++++++.|+|+.+||.++|++.++.||++.|++.++..+++++.++...+..+++  +|++++.+..      ....
T Consensus       150 ~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (500)
T PRK09584        150 GAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVV  229 (500)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHH
Confidence            6889999999999999999999999999999999998766666555444444333322  1222211110      0011


Q ss_pred             HHHHH-hhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhh
Q 007612          268 VAATK-KWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCI  346 (596)
Q Consensus       268 ~~~~~-~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (596)
                      ..... .....-++.....                     ..............         ..+   ..++ .++++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~---------~~~---~~~~-~~~~~~  275 (500)
T PRK09584        230 ALIAIATWLLHNQEIARMA---------------------LGVVALGIVVIFGK---------EAF---AMKG-AARRKM  275 (500)
T ss_pred             HHHHHHHHHHhcchHHHHH---------------------HHHHHHHHHHHHHH---------HHh---hcCH-HHHHHH
Confidence            11111 1000000000000                     00000000000000         000   0011 234555


Q ss_pred             hhhHHHHHHhHhHhhhhccccceeEeee-ccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCC
Q 007612          347 LRLLPIWLCTILYSVVFTQMASLFVEQG-AAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGL  425 (596)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~  425 (596)
                      +..+.++...+.++..+.|.++.+..+. .+.+.+..|+..+++.++++|++..++.+|+.+++..|+.+|.        
T Consensus       276 ~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~--------  347 (500)
T PRK09584        276 IVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL--------  347 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC--------
Confidence            5566677888889999999988766543 3345556677788899999999999999999987655443332        


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhH
Q 007612          426 TELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLK  505 (596)
Q Consensus       426 ~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~r  505 (596)
                      +..+++.+|+++.+++++.++.....    ...       ....+.+|+++.+++.++||.+..|...+++.+.+|+++|
T Consensus       348 ~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~-------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~r  416 (500)
T PRK09584        348 PMPHKFAIGMVLCSGAFLVLPLGAKF----AND-------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLM  416 (500)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHh----cCC-------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHH
Confidence            37889999999999999887765321    000       1236678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 007612          506 SFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGN-LNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKC  579 (596)
Q Consensus       506 g~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~  579 (596)
                      |+++|++.+...+|+.++..+......    +   .-..+. ...+++..+|..+++++++..++++++.++.++
T Consensus       417 g~~~g~~~l~~a~g~~~~g~~~~~~~~----~---~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k  484 (500)
T PRK09584        417 GFIMGSWFLTTAGAALIAGYVANLMAV----P---DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR  484 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc----c---cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888888887777653321    0   000000 112347788888888888777777766665544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=4.6e-32  Score=291.55  Aligned_cols=449  Identities=17%  Similarity=0.241  Sum_probs=317.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      +|+|.++.+++.+++++..+|++..+++.|+++.+|+++.+++.+.+.+.....++++++|+++||+.||||+++++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999966999999999999


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      ..++.+++.....                      +...++++..+.++|.|...++..++++|++|+++++    |.++
T Consensus        86 ~~lg~lll~~~~~----------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sg  139 (493)
T PRK15462         86 MAIGHVVLGASEI----------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGG  139 (493)
T ss_pred             HHHHHHHHHHhhc----------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccce
Confidence            9888876654310                      1233445555667888888899999999999986422    8899


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceecc---CCCCChhHHHH----HHHHHH
Q 007612          198 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHF---KPSGNPLARFC----QVIVAA  270 (596)
Q Consensus       198 ~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~  270 (596)
                      ++++|...|+|+.++|.+.+++.+.+||++.|.++++.++++++.++...+...+.   +++..+.....    ..+...
T Consensus       140 f~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (493)
T PRK15462        140 FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVL  219 (493)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHH
Confidence            99999999999999999999999989999999998777666666665555443332   11111101100    000000


Q ss_pred             ------HHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhh
Q 007612          271 ------TKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVK  344 (596)
Q Consensus       271 ------~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (596)
                            ........... ..+...                   .-.....+.....        ..     + ...++++
T Consensus       220 ~~~~~~~~~~~~~~~~~-~~~~~~-------------------~~~~~~~~~~~~~--------~~-----~-~~~~er~  265 (493)
T PRK15462        220 LVATPALITVLFWKEWS-VYALIV-------------------ATIIGLGVLAKIY--------RK-----A-ENQKQRK  265 (493)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHH-------------------HHHHHHHHHHHHH--------Hh-----c-CCHHHHh
Confidence                  00000000000 000000                   0000000000000        00     0 1124577


Q ss_pred             hhhhhHHHHHHhHhHhhhhccccceeE-eeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCC
Q 007612          345 CILRLLPIWLCTILYSVVFTQMASLFV-EQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSK  423 (596)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~  423 (596)
                      ++...++++...+.||..+.|.++.+. ....++|.++.|+.+++++++++|++.+++++|+...+..++.+|     ++
T Consensus       266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~-----~~  340 (493)
T PRK15462        266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG-----NR  340 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC-----CC
Confidence            888888899999999999999987543 223677888889999999999999999999999999887665433     12


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCch
Q 007612          424 GLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDG  503 (596)
Q Consensus       424 ~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~  503 (596)
                      +++...++.+|+++++++++.+.+.....         +.  ....+.+|++..++++++||.+..|..++++.+.+|++
T Consensus       341 ~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~---------~~--~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~  409 (493)
T PRK15462        341 TVRIWGKFALGLGLMSAGFCILTLSARWS---------AM--YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPG  409 (493)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhc---------CC--CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHH
Confidence            34688899999999999998876643220         00  11368899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 007612          504 LKSFGSALCMTSI-SLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVD  566 (596)
Q Consensus       504 ~rg~~~gl~~~~~-~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~  566 (596)
                      .+|+.+|++.... .+|+.++..+.+.......++. ..   ...+..+|..+|...+.++++.
T Consensus       410 ~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~-~~---~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        410 VTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDAS-GA---INYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcc-cc---ccchhhhHHHHHHHHHHHHHHH
Confidence            9999999997744 6788777766664422100000 00   0001235677888777777665

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.95  E-value=8.4e-26  Score=254.04  Aligned_cols=153  Identities=12%  Similarity=0.073  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q 007612           61 GVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCG  140 (596)
Q Consensus        61 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (596)
                      ...+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++.+++.++++++            
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa------------  252 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV------------  252 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH------------
Confidence            34455567788999999999999999999999999999999997 99999999999988888888877            


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhc
Q 007612          141 NELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFE  220 (596)
Q Consensus       141 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~  220 (596)
                                 .+.+.++++|++.|++.|+..+...++++|.+|++.      |++.+++......+|.++++.++.++.
T Consensus       253 -----------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       253 -----------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             -----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       237889999999999999999999999999999998      999999999999999999987765554


Q ss_pred             cc-------------ccchHHHHHHHHHHHHHHHHH
Q 007612          221 DE-------------GMWALGFWVSTGSAFAALVLF  243 (596)
Q Consensus       221 ~~-------------~~~~~~f~~~~~~~~~~~~~~  243 (596)
                      ..             .+||+.|++.++..++.+++.
T Consensus       316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~  351 (742)
T TIGR01299       316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL  351 (742)
T ss_pred             HhccchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            32             368888877766555444433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.95  E-value=2.3e-24  Score=239.63  Aligned_cols=335  Identities=27%  Similarity=0.469  Sum_probs=266.5

Q ss_pred             HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007612           56 AFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIR  135 (596)
Q Consensus        56 ~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~  135 (596)
                      +||++...+..|+++.+|++.+++..+...+.....+.++++|+++|+++||++++.++.++..+|..++.+....+.  
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~--   79 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS--   79 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc--
Confidence            589999999999999999999999999999999999999999999999999999999999999999988887532111  


Q ss_pred             CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhh
Q 007612          136 PRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTI  215 (596)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i  215 (596)
                                   .+..+....+++..+.++|.|+..|+..++.+|+++++++   +.|.+++.++|+++|+|+.+++++
T Consensus        80 -------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i  143 (654)
T TIGR00926        80 -------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTII  143 (654)
T ss_pred             -------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         0112344577888899999999999999999999986432   127899999999999999999999


Q ss_pred             hhhhccc-------ccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhc
Q 007612          216 LGYFEDE-------GMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVI  288 (596)
Q Consensus       216 ~g~l~~~-------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  288 (596)
                      .+++.+.       .+|..+|.+++++++++++++....+++++++|.+++.....+++..+.+++....++..      
T Consensus       144 ~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~~------  217 (654)
T TIGR00926       144 TPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEHW------  217 (654)
T ss_pred             HHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCccc------
Confidence            9988743       369999999999999998888888888887778777777777776666655332111100      


Q ss_pred             ccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccc
Q 007612          289 DANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMAS  368 (596)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (596)
                                       ...|+|.+...               +   .+..++++|++++.+++++..+.+|..+.|..+
T Consensus       218 -----------------~~~~ld~a~~~---------------~---~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s  262 (654)
T TIGR00926       218 -----------------PLHWLDYAKDK---------------H---DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGS  262 (654)
T ss_pred             -----------------chhHHHHhccc---------------c---ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence                             01223322110               0   113457788999999999999999999999999


Q ss_pred             eeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 007612          369 LFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIV  448 (596)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~  448 (596)
                      .+..|...++.+++++..++..++.++++..+++.|+.+..+.|..+|.+    .++++..++.+|++++++++++.+..
T Consensus       263 ~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~----~~ls~l~k~~iG~~la~la~~va~~v  338 (654)
T TIGR00926       263 RWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCG----TRFTSLRKMAVGGLLAALSFFVAALV  338 (654)
T ss_pred             HHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcC----CCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            88888887877777788899999999999999999999987777766543    34578999999999999999888776


Q ss_pred             Hhhhh
Q 007612          449 ECYRL  453 (596)
Q Consensus       449 ~~~~~  453 (596)
                      +..++
T Consensus       339 e~~~~  343 (654)
T TIGR00926       339 QLKVN  343 (654)
T ss_pred             HHHHh
Confidence            65544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.94  E-value=1.4e-24  Score=231.49  Aligned_cols=378  Identities=12%  Similarity=0.015  Sum_probs=250.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF  118 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~  118 (596)
                      ..|.+..+++..+....+.....+.++.|+++++|.|+.+.+++.+.+.++..+++++.|+++||+ ||||+++++.++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence            345677788888888888888889999999999999999999999999999999999999999997 9999999999888


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .++.+.+.++...++               ....+...+++.|+++|++.+...+...+++.|++|+++      |++++
T Consensus        92 ~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~  150 (399)
T PRK05122         92 ALSGLLYLLAGLLAA---------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVI  150 (399)
T ss_pred             HHHHHHHHHhhhhhc---------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccch
Confidence            777666554411111               001236678999999999999999999999999999988      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhcccc
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHL  278 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (596)
                      ++.....++|..+||.+++++.+..+|++.+++..+..++..+..   .+ .++.++++++.                  
T Consensus       151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~------------------  208 (399)
T PRK05122        151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGER------------------  208 (399)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCccc------------------
Confidence            999999999999999999999888999998877655433322211   11 11100000000                  


Q ss_pred             CCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhh-hHHHHHHhH
Q 007612          279 SAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILR-LLPIWLCTI  357 (596)
Q Consensus       279 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  357 (596)
                                                                         .+++       +..|..+. .....+...
T Consensus       209 ---------------------------------------------------~~~~-------~~~~~~~~~~~~~~~~~~  230 (399)
T PRK05122        209 ---------------------------------------------------LPFR-------RVLGRVWPYGMGLALASI  230 (399)
T ss_pred             ---------------------------------------------------hhHH-------HHHHHHHHHHHHHHHHHH
Confidence                                                               0000       00000000 000111111


Q ss_pred             hHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHH
Q 007612          358 LYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVI  437 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l  437 (596)
                      .+.......+.++..  .+.+        ..........++.++..++.+++    .+|.+        +++.+..+..+
T Consensus       231 ~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~g~l----~~r~~--------~~~~~~~~~~~  288 (399)
T PRK05122        231 GFGTIATFITLYYAA--RGWD--------GAALALTLFGVAFVGARLLFGNL----INRLG--------GLRVAIVSLLV  288 (399)
T ss_pred             HHHHHHHHHHHHHHH--cccc--------cchHHHHHHHHHHHHHHHHHHHH----HHHhc--------cHHHHHHHHHH
Confidence            111111111111111  0110        01111122233333444444433    44433        33446666666


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007612          438 AIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSIS  517 (596)
Q Consensus       438 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~  517 (596)
                      .++++...+..                    .+.+..++..++.|++.+...+.......+.+|++.||+++|+++....
T Consensus       289 ~~~~~~~~~~~--------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  348 (399)
T PRK05122        289 EILGLLLLWLA--------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLD  348 (399)
T ss_pred             HHHHHHHHHHh--------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            66666555442                    1344555667888999988888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccc
Q 007612          518 LGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKW  576 (596)
Q Consensus       518 lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~  576 (596)
                      +|..+++.+.+.+.+.                .+++..|++.+++++++.+..+++.++
T Consensus       349 ~g~~~~~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        349 LSLGITGPLAGLVASW----------------FGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHHHHHHHHH----------------cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999998877652                235778888888888776666655443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=2.1e-24  Score=229.54  Aligned_cols=374  Identities=14%  Similarity=0.068  Sum_probs=243.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF  118 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~  118 (596)
                      +|..++.+.+..+......+...+.+| .+.+++|.++.+.++..+.+.++..++.++.|+++||+ ||||++.++.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence            344455555555555444444333344 56789999999999999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .++.+.+.++                       ++.+.++++|+++|++.+...+...+++.|++|+++      |++++
T Consensus        85 ~~~~~~~~~~-----------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~  135 (390)
T PRK03545         85 IASHVLSALA-----------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQAL  135 (390)
T ss_pred             HHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHH
Confidence            9998888887                       238889999999999999888999999999999988      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhcccc
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHL  278 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (596)
                      +++..+.++|..++|.+++.+.+..||++.|++.++..++..+..+...++.++++  +++..                 
T Consensus       136 g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~-----------------  196 (390)
T PRK03545        136 SLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH--SGSLK-----------------  196 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cchHH-----------------
Confidence            99999999999999999999988899999999887665544433333222211100  00000                 


Q ss_pred             CCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhh-hhHHHHHHhH
Q 007612          279 SAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCIL-RLLPIWLCTI  357 (596)
Q Consensus       279 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  357 (596)
                                                      +..                         ++.+.+..+ .....++...
T Consensus       197 --------------------------------~~~-------------------------~~~~~~~~~~~~~~~~~~~~  219 (390)
T PRK03545        197 --------------------------------SLP-------------------------LLFRRPALVSLYLLTVVVVT  219 (390)
T ss_pred             --------------------------------HHH-------------------------HHHhCcHHHHHHHHHHHHHH
Confidence                                            000                         000011111 1111111111


Q ss_pred             hHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHH
Q 007612          358 LYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVI  437 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l  437 (596)
                      ..+......+.++.. ..+.+..      ..+.+.....++.++...+.++    +.+|.+        ++ .+..+..+
T Consensus       220 ~~~~~~~~~~~~l~~-~~g~s~~------~~~~~~~~~~~~~~~g~~~~g~----l~dr~~--------~~-~~~~~~~~  279 (390)
T PRK03545        220 AHFTAYSYIEPFVQQ-VAGLSEN------FATLLLLLFGGAGIIGSVLFSR----LGNRHP--------SG-FLLIAIAL  279 (390)
T ss_pred             HHHHHHHHHHHHHHH-hcCCCcc------HHHHHHHHHHHHHHHHHHHHHH----Hhhccc--------hh-HHHHHHHH
Confidence            222222222221111 1111111      1122222223334444444443    344432        11 24445554


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007612          438 AIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSIS  517 (596)
Q Consensus       438 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~  517 (596)
                      ..++.......                   ..+.+.+++..++.|++.+...+.....+.+..| +.+++++|+++....
T Consensus       280 ~~~~~~~l~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~  339 (390)
T PRK03545        280 LLVCLLLLLPA-------------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFN  339 (390)
T ss_pred             HHHHHHHHHHH-------------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence            44444333221                   1234555667778888887777778888888877 578999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcc
Q 007612          518 LGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAK  575 (596)
Q Consensus       518 lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~  575 (596)
                      +|..+|+.+.|.+.+.                .+++..|++.+++.+++++..+...+
T Consensus       340 ~g~~~G~~~~G~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        340 IGIGAGALLGNQVSLH----------------LGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHhc----------------cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999987752                34566888888888888877776664

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=1.1e-24  Score=239.53  Aligned_cols=448  Identities=12%  Similarity=0.036  Sum_probs=244.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRV-----LQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAI  113 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~  113 (596)
                      +++.+.+..+..+...+....+...++. +..+     .+.++.+.+++.+...++..++.++.|+++||+ |||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence            3445555555666665555444444443 3332     235566778999999999999999999999997 99999999


Q ss_pred             HHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccc
Q 007612          114 FQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHS  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  193 (596)
                      +.++..++.++++++.+..                 ...+...++++|+++|++.|...+....+++|.+|++.      
T Consensus        92 ~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------  148 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSS-----------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------  148 (502)
T ss_pred             HHHHHHHHHHHHHHccCcc-----------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------
Confidence            9999999888877751100                 01235789999999999999999999999999999999      


Q ss_pred             hhhHHHHHHHHHhHHHHHHhhhhhhhcc-----------------------cccchHHHHHHHHHHHHHHHHHHhcCcce
Q 007612          194 KVAFFSYFYLALNLGSLFSNTILGYFED-----------------------EGMWALGFWVSTGSAFAALVLFLAGTTRY  250 (596)
Q Consensus       194 r~~~~~~~~~~~~lg~~~~~~i~g~l~~-----------------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  250 (596)
                      |+++.++.+....+|..+++.++..+..                       ..+||+.|.+.++..++..+..+.     
T Consensus       149 Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~-----  223 (502)
T TIGR00887       149 RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT-----  223 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHh-----
Confidence            9999999999999999999887765421                       237999997766555444333222     


Q ss_pred             eccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCC-CCCCCCccccccccchhhhhhhhccccccccccCCC
Q 007612          251 RHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDS-STNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCS  329 (596)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (596)
                                                 +||+|+|+..+++.++ +.+...+....+..+..+.  ....+   ++++..+
T Consensus       224 ---------------------------lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~  271 (502)
T TIGR00887       224 ---------------------------IPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDE--VEKAS---TAVEVPK  271 (502)
T ss_pred             ---------------------------CCCCHHHHHHhCcchHHHHHHHHHHhccccccCccc--ccchh---ccccchh
Confidence                                       5666666655554422 2221211111000000000  00000   0000011


Q ss_pred             CCCcccCccchhhhhhh-hhhHH---HHH-HhHhHhhhhccccceeEeeeccccccccccc-cC----Ccc-ccccchhh
Q 007612          330 NPWRLCPVTQVEEVKCI-LRLLP---IWL-CTILYSVVFTQMASLFVEQGAAMKTTVSNFR-IP----PAS-MSSFDILS  398 (596)
Q Consensus       330 ~~~~~~~~~~~~~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~-~~~~~~~~  398 (596)
                      .+|+.+...  ...++. .+.+.   .++ ....++....+.++++ . ..+++....+.. ..    ... ...+..++
T Consensus       272 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~-~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (502)
T TIGR00887       272 ASWSDFFTH--FFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVIL-S-AIGYSPPAATNNAYEELYKTAVGNLIIALAG  347 (502)
T ss_pred             hhHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHH-H-HHcCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence            223211100  001111 11111   111 1111111111111111 1 111111100000 00    000 00011111


Q ss_pred             HHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHH
Q 007612          399 VAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQY  478 (596)
Q Consensus       399 ~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (596)
                      .+....+..    .+.+|.+ ||       ..+.++..+.++++..+++....                ......++...
T Consensus       348 ~i~g~~~~~----~l~dr~g-RR-------~~l~~~~~~~~~~~~~l~~~~~~----------------~~~~~~~~~~~  399 (502)
T TIGR00887       348 TVPGYWVTV----FLVDIIG-RK-------PIQLMGFFILTVLFFVLGFAYNH----------------LSTHGFLAIYV  399 (502)
T ss_pred             HHHHHHHHH----HHhhhhc-ch-------hHHHHHHHHHHHHHHHHHHHHHh----------------cchhHHHHHHH
Confidence            222223333    3344544 22       23556666666665555442210                00111112221


Q ss_pred             HHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHH
Q 007612          479 ALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFL  558 (596)
Q Consensus       479 ~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~  558 (596)
                      +...++.....+..+.+..|.+|.+.|++++|+.++.+++++++++.+.+.+.+......  ++    ....++...|++
T Consensus       400 ~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~----~~~~~~~~~~~i  473 (502)
T TIGR00887       400 LAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK--GY----PTGIWMGHVLEI  473 (502)
T ss_pred             HHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccc--cc----cccccchHHHHH
Confidence            222222223446677888999999999999999999999999999999997654211000  00    001233456777


Q ss_pred             HHHHHHHHHHHHHhhcccccccchhhhhh
Q 007612          559 LAGLTTVDFVVYIACAKWYKCIELEAKCA  587 (596)
Q Consensus       559 ~a~i~~i~~~~~~~~~~~~~~~~~~~~~~  587 (596)
                      +++.++++.+++ ++.+|++++++||.++
T Consensus       474 ~~~~~~~~~i~~-~~lpEt~~~~leei~~  501 (502)
T TIGR00887       474 FALFMFLGILFT-LLIPETKGKSLEELSG  501 (502)
T ss_pred             HHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence            888888776654 5668999988877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.94  E-value=1.4e-24  Score=233.00  Aligned_cols=392  Identities=15%  Similarity=0.102  Sum_probs=246.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 007612           45 IILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVL  124 (596)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~  124 (596)
                      ..+..++............+|.+. ++++.++.+.+++.+...++..+++++.|+++||+ |||++++++.++..++.+.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~   98 (417)
T PRK10489         21 AVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIG   98 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHH
Confidence            444445555555555556666665 46778999999999999999999999999999997 9999998888777776665


Q ss_pred             HHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHH
Q 007612          125 LSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLA  204 (596)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  204 (596)
                      +........                  .+.+.+++.|++.|++.+...++..+++.+.+|+++      |+++.++.+..
T Consensus        99 ~~~~~~~~~------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  154 (417)
T PRK10489         99 LALNAFLPE------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLT  154 (417)
T ss_pred             HHHHHHcCC------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHH
Confidence            543211011                  236778889999999988888888999999999888      99999999999


Q ss_pred             HhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCccc
Q 007612          205 LNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGED  284 (596)
Q Consensus       205 ~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  284 (596)
                      .++|..+||.+++.+.+..+|++.|++.++..++..++.+..++..+++++++++..+                      
T Consensus       155 ~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------------  212 (417)
T PRK10489        155 VRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLRS----------------------  212 (417)
T ss_pred             HhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchHH----------------------
Confidence            9999999999999998888999999887766555544433322110000000000000                      


Q ss_pred             chhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhc
Q 007612          285 LYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFT  364 (596)
Q Consensus       285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (596)
                                              ..+                   +++     .+.+.+.+.......+..........
T Consensus       213 ------------------------~~~-------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (417)
T PRK10489        213 ------------------------LLA-------------------GFR-----FLLASPVVGGIALLGGLLTMASAVRV  244 (417)
T ss_pred             ------------------------HHH-------------------HHH-----HHHcChHHHHHHHHHHHHHHHHhHHH
Confidence                                    000                   000     00011111111111111111111111


Q ss_pred             cccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 007612          365 QMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLA  444 (596)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~  444 (596)
                      +.+ .+..+..+.+..      ..+.+.....++.++...+.+++    .+|.+        +.+.+..+.++.+++++.
T Consensus       245 ~~p-~~~~~~~g~~~~------~~g~~~~~~~~g~~ig~~~~~~l----~~~~~--------~~~~l~~~~~~~~~~~~~  305 (417)
T PRK10489        245 LYP-ALADEVWQMGAA------QIGLLYAAVPLGAALGALTSGWL----AHSAR--------PGLLMLLSTLGSFLAVGL  305 (417)
T ss_pred             hhH-HHHHhccCCChh------HhHHHHHHHHHHHHHHHHHHHHh----hhccC--------cchHHHHHHHHHHHHHHH
Confidence            111 111111111111      11222233334444444444433    33321        223456666666666655


Q ss_pred             HHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 007612          445 AGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSS  524 (596)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~  524 (596)
                      +...                    .+.+......++.|++.+...+..+++..+.+|++.||+++|++++...+|..+|+
T Consensus       306 ~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~  365 (417)
T PRK10489        306 FGLM--------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGA  365 (417)
T ss_pred             HHcc--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHH
Confidence            5432                    23444556677788888888888889999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccchhhhhh
Q 007612          525 LLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCA  587 (596)
Q Consensus       525 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~~~~~~~~  587 (596)
                      .+.+.+.+..                ++...++..++..++..++.+...+++|++++|+.++
T Consensus       366 ~l~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        366 ALLGGLGAMM----------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             HHHHHHHHHh----------------chhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence            9999887632                2234666667666666666667777878777776544

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=7.3e-24  Score=225.42  Aligned_cols=374  Identities=12%  Similarity=0.020  Sum_probs=242.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.++.+.+..+..........+.+|.|+.+++|+|+.+.+++.+.+.++..+++++.|+++||+ ||||+++++.+...+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~   93 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGL   93 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHH
Confidence            4566677777777777778888899999999999999999999999999999999999999997 999999998877666


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +.+........+.               ....+...++++|+++|++.+...+...+++.|.+|+++      |++++++
T Consensus        94 ~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~  152 (392)
T PRK12382         94 AGLAYLLAAILPV---------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSW  152 (392)
T ss_pred             HHHHHHhhhcccc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhH
Confidence            5543322211011               001357889999999999999888888999999999888      9999999


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCC
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSA  280 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  280 (596)
                      .+.+.++|..++|.+++++.+..||++.+.+..+..++...   .. ++.++.+++++..                    
T Consensus       153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~--------------------  208 (392)
T PRK12382        153 NGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FN-GTVRKVPAHAGER--------------------  208 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HH-HhccCCCCCcccC--------------------
Confidence            99999999999999999998888999876655433222221   11 1111100000000                    


Q ss_pred             CcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhh-hHHHHHHhHhH
Q 007612          281 EGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILR-LLPIWLCTILY  359 (596)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (596)
                                                                       .+++       +..|..+. ..........+
T Consensus       209 -------------------------------------------------~~~~-------~~~~~~~~~~~~~~l~~~~~  232 (392)
T PRK12382        209 -------------------------------------------------PSLW-------SVVGLIWKPGLGLALQGVGF  232 (392)
T ss_pred             -------------------------------------------------chHH-------HHHHHHHHhHHHHHHHHHHH
Confidence                                                             0000       00000000 00011111111


Q ss_pred             hhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHH
Q 007612          360 SVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAI  439 (596)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~  439 (596)
                      .....+.+.++..  .+.+        ..........++.++..++.+++    .+|.+ +       ++.+..+..+.+
T Consensus       233 ~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~g~l----~~r~g-~-------~~~~~~~~~~~~  290 (392)
T PRK12382        233 AVIGTFVSLYFAS--KGWA--------MAGFTLTAFGGAFVLMRVLFGWM----PDRFG-G-------VKVAIVSLLVET  290 (392)
T ss_pred             hHHHHHHHHHHHh--cCCc--------hhHHHHHHHHHHHHHHHHHHHHH----HHhcC-C-------CeehHHHHHHHH
Confidence            1111111111111  0000        01111122233334444555544    34443 1       123556666666


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 007612          440 VAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLG  519 (596)
Q Consensus       440 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg  519 (596)
                      ++++.....                    .+.+...+..++.+++.+...+...+...+.+|++.||++.|+.++...+|
T Consensus       291 ~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  350 (392)
T PRK12382        291 VGLLLLWLA--------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIA  350 (392)
T ss_pred             HHHHHHHHc--------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            666555442                    134455566778889888888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhc
Q 007612          520 NYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACA  574 (596)
Q Consensus       520 ~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~  574 (596)
                      +.+++.+.+.+.+.                .+++..|++.+++.+++.++.+...
T Consensus       351 ~~ig~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        351 YGVSGPLAGMLATS----------------FGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHHHH----------------hCchHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999987762                2346688888887777776665443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.94  E-value=5.8e-24  Score=233.24  Aligned_cols=399  Identities=12%  Similarity=0.031  Sum_probs=246.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      +..+..+++..++..+..-.+...+|. +.+++|.+..+.+|+.+.+.++..++.++.|+++||+ |||++++++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            445666777777777766666665655 4678999999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccC-CccccccccchhhHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQY-DEEDAKEGHSKVAFF  198 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~  198 (596)
                      ++.++++++   +                    +.+.++++|+++|+|.+...|.....+.+.+ |+++      |++++
T Consensus        83 ~~~~~~~~a---~--------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~  133 (495)
T PRK14995         83 LASLAAAFS---P--------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMAL  133 (495)
T ss_pred             HHHHHHHHc---C--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHH
Confidence            999999887   2                    3888999999999999998888888887776 5566      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHH----HH--HHHHHH
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFC----QV--IVAATK  272 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~  272 (596)
                      +++....++|..+||.+++++.++.+|||.|++.....++.+++.....++.+++++++.......    ..  +....+
T Consensus       134 g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~  213 (495)
T PRK14995        134 GVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAK  213 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998776655555444444443222211111111100    00  000111


Q ss_pred             hhccccCCCcccchhcccCCCCCCCCCccccccccc-h-hhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhH
Q 007612          273 KWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFK-F-LDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLL  350 (596)
Q Consensus       273 ~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (596)
                      .  .  ... .+                 ....... . ..........   ..+...+.|...   ....+.|......
T Consensus       214 ~--~--~~~-~~-----------------~~~~~~~~~~~~~~~l~~f~---~~e~~~~~p~~~---~~lf~~~~~~~~~  265 (495)
T PRK14995        214 T--A--LKG-FL-----------------SLWVTSLTLLTGALLLGLFI---RTQLAASRPMID---MRLFTHRIILSGV  265 (495)
T ss_pred             h--c--ccc-CC-----------------chHHHHHHHHHHHHHHHHHH---HHHhcCCCCCcC---HHHhCCcccHHHH
Confidence            0  0  000 00                 0000000 0 0000000000   000011222211   0111112211111


Q ss_pred             -HHHHHhHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHH
Q 007612          351 -PIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQ  429 (596)
Q Consensus       351 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~  429 (596)
                       ..++....+....... +.+.+...+.+..      ..+.+.....++..+..++.+++.    +|.+        +++
T Consensus       266 ~~~~~~~~~~~~~~~~~-~~~lq~v~g~s~~------~ag~~~~~~~~~~~~~~~~~g~l~----~r~g--------~~~  326 (495)
T PRK14995        266 VMAMTAMITLVGFELLM-AQELQFVHGLSPL------EAGMFMLPVMVASGFSGPIAGILV----SRLG--------LRL  326 (495)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHH----HHcC--------chH
Confidence             1111111111111111 1111111111111      122333333455555666666543    4443        233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHH
Q 007612          430 RMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGS  509 (596)
Q Consensus       430 ~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~  509 (596)
                      .+..|+++.++++..+....                 ...+.+.....+++.|++.+...+.....+.+.+|++.+|.++
T Consensus       327 ~~~~g~~~~~~~~~~l~~~~-----------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~  389 (495)
T PRK14995        327 VATGGMALSALSFYGLAMTD-----------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAG  389 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-----------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHH
Confidence            46677777777766554432                 1123444556778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 007612          510 ALCMTSISLGNYVSSLLLTMVMKI  533 (596)
Q Consensus       510 gl~~~~~~lg~~lg~~l~~~i~~~  533 (596)
                      ++.++.+.+|+.+|+.+.+.+.+.
T Consensus       390 ~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        390 AIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.94  E-value=6.6e-25  Score=239.68  Aligned_cols=434  Identities=13%  Similarity=0.069  Sum_probs=244.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVL--------QQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTC  111 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--------g~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l  111 (596)
                      .+.+++..+..+...+....+.+..+ .+++.+        |.++.+.+++.+.+.++..+++++.|+++||+ ||||++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~   88 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVE-SLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSL   88 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHH-HHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence            34445455444444443333333333 344444        88999999999999999999999999999997 999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcc-ccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccccc
Q 007612          112 AIFQGIFVIGLVLLSLSSYL-FLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKE  190 (596)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  190 (596)
                      +++.+++.++.+..+++... ...            ...+......++++|+++|++.|+..+...++++|++|+++   
T Consensus        89 ~~~~~l~~i~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~---  153 (479)
T PRK10077         89 KIAAVLFFISALGSAWPEFGFTSI------------GPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI---  153 (479)
T ss_pred             HHHHHHHHHHHHHHHhhccccccc------------cccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh---
Confidence            99999988887777653100 000            00011235678899999999999999999999999999998   


Q ss_pred             ccchhhHHHHHHHHHhHHHHHHhhhhhhhc--------ccccchHHHHHHHHHHHHHHHHHHhcCcceeccC-CCCChhH
Q 007612          191 GHSKVAFFSYFYLALNLGSLFSNTILGYFE--------DEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFK-PSGNPLA  261 (596)
Q Consensus       191 ~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~--------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  261 (596)
                         |++++++.+.+..+|.++++.+++.+.        +..+||++|++.++..++..+..++. ++.++.. .+++. +
T Consensus       154 ---rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~-~  228 (479)
T PRK10077        154 ---RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFV-PETPRYLMSRGKQ-E  228 (479)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHcCCH-H
Confidence               999999999999999999887665442        45799999998776655554433332 3221110 01110 0


Q ss_pred             HHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchh
Q 007612          262 RFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVE  341 (596)
Q Consensus       262 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (596)
                      +..+...   +...   ++.                        .....+..     ++  ......            +
T Consensus       229 ~~~~~~~---~~~~---~~~------------------------~~~~~~~~-----~~--~~~~~~------------~  259 (479)
T PRK10077        229 QAEGILR---KIMG---NTL------------------------ATQALQEI-----KH--SLDHGR------------K  259 (479)
T ss_pred             HHHHHHH---HHcC---Chh------------------------HHHHHHHH-----HH--HHHHhh------------h
Confidence            0000000   0000   000                        00000000     00  000000            0


Q ss_pred             hhhhhhhhH---HHHHHhHhHhhhhcccc------ceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhc
Q 007612          342 EVKCILRLL---PIWLCTILYSVVFTQMA------SLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEP  412 (596)
Q Consensus       342 ~~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  412 (596)
                      ..+..+...   ............+..+.      +.+.. ..+.+..      ..........+..++..++.+++   
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~g~~~~------~~~~~~~~~~~~~~i~~~~~g~l---  329 (479)
T PRK10077        260 TGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFK-TLGASTD------IALLQTIIVGVINLTFTVLAIMT---  329 (479)
T ss_pred             hhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH-HcCCCCc------hHHHHHHHHHHHHHHHHHHHHHH---
Confidence            000000000   00000010010000000      00000 0011100      01111122233334444455544   


Q ss_pred             ccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhh-hhh
Q 007612          413 LAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFM-YVA  491 (596)
Q Consensus       413 ~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~  491 (596)
                       .+|.+        ++..+..+.++++++++.++.....                +....+......+.+.+.+.. .|.
T Consensus       330 -~dr~g--------~r~~~i~~~~~~~v~~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  384 (479)
T PRK10077        330 -VDKFG--------RKPLQIIGALGMAIGMFSLGTAFYT----------------QAPGIVALLSMLFYVAAFAMSWGPV  384 (479)
T ss_pred             -HHHhc--------ChHHHHHhHHHHHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHHhccccch
Confidence             34443        3345777888888877766543211                112223333444455554443 367


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 007612          492 QLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYI  571 (596)
Q Consensus       492 ~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~  571 (596)
                      .+.++.|.+|++.||+++|+.+..+++|+.+++.+.+.+.+.       +|..   +..+....|++.++++++++++.+
T Consensus       385 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  454 (479)
T PRK10077        385 CWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKN-------SWLV---AHFHNGFSYWIYGCMGVLAALFMW  454 (479)
T ss_pred             hHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-------cchh---hhccCccHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999998888755420       1221   112234567777888888888777


Q ss_pred             hhcccccccchhhhhhhc
Q 007612          572 ACAKWYKCIELEAKCAES  589 (596)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~  589 (596)
                      ++.+|+|+++.|+.+++.
T Consensus       455 ~~~~e~~~~~~~~~~~~~  472 (479)
T PRK10077        455 KFVPETKGKTLEEMEALW  472 (479)
T ss_pred             hccccCCCCCHHHHHHHH
Confidence            788888888777655443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.94  E-value=2.4e-24  Score=232.43  Aligned_cols=167  Identities=16%  Similarity=0.087  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      ..+..++..++.....+.....++.+ .+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~  101 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII  101 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence            34444555555555555555556555 457999999999999999999999999999999997 9999999999999999


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      .+++.++                       .+++.+++.|++.|++.|...+...+++.+++|+++      |+++++++
T Consensus       102 ~~~~~~~-----------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~  152 (434)
T PRK11663        102 NILFGFS-----------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIW  152 (434)
T ss_pred             HHHHHHH-----------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHH
Confidence            8888877                       237778889999999999888999999999999988      99999999


Q ss_pred             HHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHH
Q 007612          202 YLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAA  239 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~  239 (596)
                      +.+.++|..++|.+.+++.+.++|++.|++.++..++.
T Consensus       153 ~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        153 NTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            99999999999999999998899999998877654433

>PRK10504 putative transporter; Provisional

Probab=99.94  E-value=1.1e-23  Score=229.77  Aligned_cols=179  Identities=15%  Similarity=0.116  Sum_probs=153.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      .+.+|++++..++.....+.+.+.+|.+.+ ++|.++.+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            346788888888888888888888887765 6999999999999999999999999999999997 99999999988888


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ++.+++.++   +                    +...++++|+++|++.+...|...+++.|.+|+++      |+++.+
T Consensus        87 ~~~~~~~~~---~--------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  137 (471)
T PRK10504         87 LGSLFCALS---G--------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMT  137 (471)
T ss_pred             HHHHHHHHh---C--------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence            888777765   2                    37778899999999999999999999999999888      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcc
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTR  249 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  249 (596)
                      +.+...++|..++|.++|++.+..+|++.|++......+..+......++
T Consensus       138 ~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        138 FVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999998776555555444444333

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=3e-24  Score=228.78  Aligned_cols=175  Identities=17%  Similarity=0.174  Sum_probs=152.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      +.+|.++.+++..++...+.+.+.++++.|+++++|++..+.+++.+.+.++..+++++.|+++||+ |||++++++.++
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~   82 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA   82 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence            4556788888999999999999999999999999999999999999999999999999999999997 999999999888


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      ..++.+++.++                       ++.+.+++++.+.+.+.+...+...++..|.+|+++      |+++
T Consensus        83 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  133 (395)
T PRK10054         83 FASGFIAIPLV-----------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKI  133 (395)
T ss_pred             HHHHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHH
Confidence            88888777776                       236667777888887777778889999999999888      9999


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHH
Q 007612          198 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLF  243 (596)
Q Consensus       198 ~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~  243 (596)
                      +++.+...++|..++|.+++++.+ .+|+.+|++.++..++..+..
T Consensus       134 ~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        134 FSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999998875 689999998776666554443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.9e-23  Score=215.49  Aligned_cols=380  Identities=15%  Similarity=0.097  Sum_probs=269.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHH
Q 007612           37 SGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG  116 (596)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~  116 (596)
                      +..+..++.+.+..|....+-+.....+|. +.+++|.|..++|+.++.+.++..++.|+...+.||+ .||++++..+.
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            455667888888888888888888777664 6789999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      +++++.++.+++   |+                    +..++++|++.|+..|.+++...++.++..|+++      |++
T Consensus        87 lFi~~n~l~alA---p~--------------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~  137 (394)
T COG2814          87 LFIVSNLLSALA---PS--------------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGR  137 (394)
T ss_pred             HHHHHHHHHHHh---cc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhh
Confidence            999999999999   44                    9999999999999999999999999999999999      999


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCc-ceeccCCCCChhHHHHHHHHHHHHhhc
Q 007612          197 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTT-RYRHFKPSGNPLARFCQVIVAATKKWR  275 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (596)
                      +.++...+..++.++|..++.++.+.+|||+.|+..++..++.++..+...| +..++++.. +..+             
T Consensus       138 Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~-~~~~-------------  203 (394)
T COG2814         138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPG-PLRT-------------  203 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCc-chhH-------------
Confidence            9999999999999999999999999999999999988887777776665555 111100000 0000             


Q ss_pred             cccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHH
Q 007612          276 VHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLC  355 (596)
Q Consensus       276 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (596)
                                                          .                   ++     ..++.+.+..+....+.
T Consensus       204 ------------------------------------~-------------------~~-----~l~~p~v~~~l~~t~l~  223 (394)
T COG2814         204 ------------------------------------L-------------------LR-----LLRRPGVLLGLLATFLF  223 (394)
T ss_pred             ------------------------------------H-------------------HH-----HhcCchHHHHHHHHHHH
Confidence                                                0                   00     00011112222222333


Q ss_pred             hHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHH
Q 007612          356 TILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGL  435 (596)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~  435 (596)
                      ....+..|.+..+++.+ ..+++.+      ..+.+....+++.++...+.++    +.|| +        .++.+....
T Consensus       224 ~~g~F~~ftYi~P~L~~-v~g~s~~------~vs~~Ll~~Gv~~~~Gn~~gGr----l~dr-~--------~~~~l~~~~  283 (394)
T COG2814         224 MTGHFALYTYIRPFLES-VAGFSVS------AVSLVLLAFGIAGFIGNLLGGR----LADR-G--------PRRALIAAL  283 (394)
T ss_pred             HcchhhhHHhHHHHHHH-ccCCCHh------HHHHHHHHHHHHHHHHHHHHhh----hccc-c--------chhHHHHHH
Confidence            33334444333332221 1111111      1223333344555555555553    3444 2        445566666


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHH
Q 007612          436 VIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTS  515 (596)
Q Consensus       436 ~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~  515 (596)
                      .+.++.++.+.+..                   .+.+..+...++.+++.....+..+....+.. ++.++.+++++...
T Consensus       284 ~l~a~~~l~l~~~~-------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa  343 (394)
T COG2814         284 LLLALALLALTFTG-------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAA  343 (394)
T ss_pred             HHHHHHHHHHHHhc-------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHH
Confidence            77777776665532                   23444455555566666666666666666644 46799999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 007612          516 ISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWY  577 (596)
Q Consensus       516 ~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~  577 (596)
                      .++|..+|..+.|.+.+                ..++....|+.+++.+++.+..+...+..
T Consensus       344 ~nlgia~GA~lGG~v~~----------------~~g~~~~~~~~a~l~~~a~~~~~~~~~~~  389 (394)
T COG2814         344 FNLGIALGAALGGLVLD----------------ALGYAATGWVGAALLLLALLLALLSARKD  389 (394)
T ss_pred             HHHHHHHHHHHHHHHHH----------------hhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999998876                34566778888888888877776655543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=9.1e-24  Score=225.43  Aligned_cols=168  Identities=14%  Similarity=0.153  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007612           44 IIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLV  123 (596)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~  123 (596)
                      +++++..++...+.+.+.++++.|+++++|+|+.+.+.+.+...+...+..+++|+++||+ |||++++++.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            6677888899999999999999999999999999999999999999999999999999997 999999999999999888


Q ss_pred             HHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHH
Q 007612          124 LLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYL  203 (596)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  203 (596)
                      ++.+.   +                    +.+.+++.|++.|++.+...|...+++.|.+|+++      |++++++.+.
T Consensus        92 ~~~~~---~--------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~  142 (400)
T PRK11646         92 TMAIA---H--------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMM  142 (400)
T ss_pred             HHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHH
Confidence            88766   2                    37778899999999998888999999999999988      9999999999


Q ss_pred             HHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHH
Q 007612          204 ALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVL  242 (596)
Q Consensus       204 ~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~  242 (596)
                      ..++|..+||.+++++. ..+|++.|++.++..++..++
T Consensus       143 ~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        143 QDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998 679999999877655544433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=1.1e-23  Score=225.08  Aligned_cols=384  Identities=13%  Similarity=0.091  Sum_probs=242.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      .++..+.+.+...+.+.+..+......| .+.+++|.++.+.+++.+...++..++.++.|+++||+ |||+++.++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence            4455666666777777777766655555 45678999999999999999999999999999999997 999999999888


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      ..++.+++.++                       .+...+++.|++.|++.+...+...+++.|++|+++      |+++
T Consensus        90 ~~~~~~~~~~~-----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~  140 (406)
T PRK11551         90 FGLFSLATAQA-----------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTA  140 (406)
T ss_pred             HHHHHHHHHHh-----------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            88887777766                       237788899999999999999999999999999988      9999


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccc
Q 007612          198 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVH  277 (596)
Q Consensus       198 ~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (596)
                      +++.+.+.++|..+++.+++.+.+..+|++.|++.++..++..++.....++.++.++++..                  
T Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------  202 (406)
T PRK11551        141 VSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA------------------  202 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc------------------
Confidence            99999999999999999998888889999999887655444443333322221110000000                  


Q ss_pred             cCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhH
Q 007612          278 LSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTI  357 (596)
Q Consensus       278 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (596)
                       .++                        ..+..+.  .                +     +..+.++........+....
T Consensus       203 -~~~------------------------~~~~~~~--~----------------~-----~~~~~~~~~~~~~~~~~~~~  234 (406)
T PRK11551        203 -GKQ------------------------RAPVLRA--L----------------F-----GEGRATATLLLWISYFFTLI  234 (406)
T ss_pred             -chh------------------------hhhhHHH--H----------------h-----hhhhhhHHHHHHHHHHHHHH
Confidence             000                        0000000  0                0     00000111111111111112


Q ss_pred             hHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHH
Q 007612          358 LYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVI  437 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l  437 (596)
                      .++....+.+.+...  .+.+..      ..+.......++.++...+.+++    .+|.+        +++.+.++.+.
T Consensus       235 ~~~~~~~~~p~~~~~--~g~s~~------~~~~~~~~~~~~~~~~~~~~g~l----~dr~g--------~~~~~~~~~~~  294 (406)
T PRK11551        235 VLYFLLNWLPSLLVG--QGLSRS------QAGLVQIAFNIGGALGSLLIGAL----MDRLR--------PRRVVLLIYAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHh--CCCChh------hhhHHHHHHHHHHHHHHHHHHHH----HHHHh--------HHHHHHHHHHH
Confidence            222222222221111  111111      12223333334444555555544    34433        22334444444


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007612          438 AIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSIS  517 (596)
Q Consensus       438 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~  517 (596)
                      ..++++.+...                    .+.+.+....++.+++.....+..+++..|.+|++.||++.|+.++...
T Consensus       295 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  354 (406)
T PRK11551        295 ILASLAALAAA--------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGR  354 (406)
T ss_pred             HHHHHHHHHhc--------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhh
Confidence            44444443321                    1334445556677777777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 007612          518 LGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIAC  573 (596)
Q Consensus       518 lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~  573 (596)
                      +|..+|+.+.+.+.+.               .+++...++..+...+++.+..+..
T Consensus       355 ~g~~~g~~~~g~l~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        355 LGSMAGPLLAGQLLAL---------------GRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHhhhHhhhhcc---------------CCchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999977542               1233445665555555555554443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.93  E-value=3.4e-24  Score=233.52  Aligned_cols=152  Identities=9%  Similarity=-0.065  Sum_probs=125.5

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCC
Q 007612           65 VLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELT  144 (596)
Q Consensus        65 ~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (596)
                      .+.+.+++|+++.+.+++.+.+.+++.++++++|+++||+ |||+++.++.++..++.+.+++....             
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-------------  117 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS-------------  117 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence            3457789999999999999999999999999999999997 99999998888777776666543110             


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccc-
Q 007612          145 PCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEG-  223 (596)
Q Consensus       145 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~-  223 (596)
                           ..++...+++.|++.|++.+...|...+++++++|+++      |+++++++..+.++|..+++.+..++.+.. 
T Consensus       118 -----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~  186 (467)
T PRK09556        118 -----GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFF  186 (467)
T ss_pred             -----ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence                 01348889999999999999999999999999999999      999999999999999999998887665542 


Q ss_pred             --cchHHHHHHHHHHHHHHH
Q 007612          224 --MWALGFWVSTGSAFAALV  241 (596)
Q Consensus       224 --~~~~~f~~~~~~~~~~~~  241 (596)
                        +|+..|.+.++..++..+
T Consensus       187 ~~~~~~~f~~~g~~~~~~~i  206 (467)
T PRK09556        187 DGHVIGMFIFPSIIALIIGF  206 (467)
T ss_pred             cCcchhHHHHHHHHHHHHHH
Confidence              688888776655444333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.93  E-value=1.4e-24  Score=235.41  Aligned_cols=144  Identities=19%  Similarity=0.253  Sum_probs=123.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhH
Q 007612           75 NNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEI  154 (596)
Q Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (596)
                      +..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++.+....                    .+.
T Consensus        69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~  127 (481)
T TIGR00879        69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA--------------------LSV  127 (481)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc--------------------cch
Confidence            389999999999999999999999999997 99999999999999988888665221                    225


Q ss_pred             HHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhh---hhhcccccchHHHHH
Q 007612          155 CLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTIL---GYFEDEGMWALGFWV  231 (596)
Q Consensus       155 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~---g~l~~~~~~~~~f~~  231 (596)
                      +.++++|++.|++.+...+...+++.|++|+++      |++++++++.+.++|..+++.++   +...+..+||+.|++
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~  201 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL  201 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence            678999999999999999999999999999999      99999999999999999999988   666677899999998


Q ss_pred             HHHHHHHHHHHHHh
Q 007612          232 STGSAFAALVLFLA  245 (596)
Q Consensus       232 ~~~~~~~~~~~~~~  245 (596)
                      .++..++.++..++
T Consensus       202 ~~~~~~~~~~~~~~  215 (481)
T TIGR00879       202 QLIPAGLLFLGLFF  215 (481)
T ss_pred             HHHHHHHHHHHHhc
Confidence            66555544444333

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=3.2e-23  Score=216.89  Aligned_cols=358  Identities=13%  Similarity=0.051  Sum_probs=231.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007612           46 ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLL  125 (596)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~  125 (596)
                      ++...+............+|.|.. +++.++.+.+++.+...++..++.++.|+++||+ ||||+++++.++..++..++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence            445556666666566666777765 5899999999999999999999999999999997 99999999988888877777


Q ss_pred             HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHH
Q 007612          126 SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLAL  205 (596)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  205 (596)
                      .+....+                  +.+.+.++++|++.|++.+...+...+++.|++|+++      |++.+++.+...
T Consensus        82 ~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  137 (365)
T TIGR00900        82 PFVALLG------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVR  137 (365)
T ss_pred             HHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHH
Confidence            7662111                  1247889999999999999999999999999999988      999999999999


Q ss_pred             hHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccc
Q 007612          206 NLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDL  285 (596)
Q Consensus       206 ~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l  285 (596)
                      ++|..++|.+++++.+..+|++.|++.++..++..+..+..+.+.+++++.++...+.                      
T Consensus       138 ~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  195 (365)
T TIGR00900       138 SLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAV----------------------  195 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhH----------------------
Confidence            9999999999999998899999998877655555444333222111100000000000                      


Q ss_pred             hhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHH-HHHhHhHhhhhc
Q 007612          286 YVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPI-WLCTILYSVVFT  364 (596)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  364 (596)
                                           .+  +..                ..++     ...+.+.+...... +.....+.....
T Consensus       196 ---------------------~~--~~~----------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (365)
T TIGR00900       196 ---------------------LR--DTR----------------EGIK-----FVLKNPLLRTLLLLALLFNLVFAPAIV  231 (365)
T ss_pred             ---------------------HH--HHH----------------hHHH-----HHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence                                 00  000                0000     00111112111111 111111111111


Q ss_pred             cccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 007612          365 QMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLA  444 (596)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~  444 (596)
                      ...+++..+..+.+..      ..+.+.....++.++..++.++    +.+|.+        +++.+..+..+.++++..
T Consensus       232 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----l~~~~~--------~~~~~~~~~~~~~~~~~~  293 (365)
T TIGR00900       232 ALFPYVQSKYLGRGST------HYGWVLAAFGLGALLGALLLGL----LGRYFK--------RMALMTGAIFVIGLAILV  293 (365)
T ss_pred             HHhHHHHHHHhCCchH------HHHHHHHHHHHHHHHHHHHHHH----HHHHhc--------hhHHHHHHHHHHHHHHHH
Confidence            1111221111111111      1122222333444444444443    333433        334455566666666555


Q ss_pred             HHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 007612          445 AGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSS  524 (596)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~  524 (596)
                      .....                  + +.+...+..++.|++.+...+...++..+.+|++.||+++|+.++...++..+++
T Consensus       294 ~~~~~------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~  354 (365)
T TIGR00900       294 VGLTP------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGL  354 (365)
T ss_pred             HHhhc------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54421                  1 2455666778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 007612          525 LLLTMVMK  532 (596)
Q Consensus       525 ~l~~~i~~  532 (596)
                      .+.+.+.+
T Consensus       355 ~~~g~l~~  362 (365)
T TIGR00900       355 ILAGPLAD  362 (365)
T ss_pred             HHHHHHHH
Confidence            99997765

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.92  E-value=3.8e-23  Score=221.56  Aligned_cols=181  Identities=12%  Similarity=0.056  Sum_probs=151.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      .+|+.++.+++..+++......+.... +.+++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++.+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~   82 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAG-LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL   82 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence            356666666666666666666554444 478899999999999999999999999999999999997 999999999999


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      ..++.++++++   +                    +...+++.|++.|++.+...|....++.|++|+++      |+++
T Consensus        83 ~~~~~~~~~~~---~--------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~  133 (412)
T TIGR02332        83 WGIASTATMFA---T--------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARA  133 (412)
T ss_pred             HHHHHHHHHHh---c--------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHH
Confidence            99999988887   2                    37789999999999999999999999999999998      9999


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhhcc------cccchHHHHHHHHHHHHHHHHHHhcCcc
Q 007612          198 FSYFYLALNLGSLFSNTILGYFED------EGMWALGFWVSTGSAFAALVLFLAGTTR  249 (596)
Q Consensus       198 ~~~~~~~~~lg~~~~~~i~g~l~~------~~~~~~~f~~~~~~~~~~~~~~~~~~~~  249 (596)
                      +++++.+..+|..+++.+++++.+      ..|||+.|++.++..++..++.++..++
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~  191 (412)
T TIGR02332       134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD  191 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence            999999999999999999988763      3699999998776655544444443333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.92  E-value=4.4e-23  Score=217.56  Aligned_cols=154  Identities=19%  Similarity=0.220  Sum_probs=136.1

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCC
Q 007612           63 NLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNE  142 (596)
Q Consensus        63 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (596)
                      ...+++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..+++++   +          
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~---~----------   80 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA---G----------   80 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH---c----------
Confidence            344567889999999999999999999999999999999997 99999999999988888888877   2          


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc
Q 007612          143 LTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE  222 (596)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~  222 (596)
                                +.+.++++|++.|++.+...+...+++.|++|+++      |++.+++.+...++|..++|.+++++.+.
T Consensus        81 ----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  144 (399)
T TIGR00893        81 ----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIH  144 (399)
T ss_pred             ----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence                      37889999999999999999999999999999998      99999999999999999999999998888


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhc
Q 007612          223 GMWALGFWVSTGSAFAALVLFLAG  246 (596)
Q Consensus       223 ~~~~~~f~~~~~~~~~~~~~~~~~  246 (596)
                      .+|++.|++.++..++..+..+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       145 FSWQWAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             CCchHHHHHHHHHHHHHHHHhhhe
Confidence            999999998776655554444433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.92  E-value=7.1e-23  Score=222.19  Aligned_cols=154  Identities=9%  Similarity=0.045  Sum_probs=123.7

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCC
Q 007612           63 NLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNE  142 (596)
Q Consensus        63 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (596)
                      ...+|+.++ |+++.+.+++.+.+.++..++++++|+++||+ |||++++++.++.+++.++++++...           
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~-----------  116 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA-----------  116 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence            344577777 99999999999999999999999999999997 99999999999888888877765110           


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHH-HHhhhhhhhcc
Q 007612          143 LTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSL-FSNTILGYFED  221 (596)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~-~~~~i~g~l~~  221 (596)
                              ..+...+++.|++.|++.|...|.....+.+++|+++      |++++++++.+.++|+. .+|.++..+..
T Consensus       117 --------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~  182 (452)
T PRK11273        117 --------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAW  182 (452)
T ss_pred             --------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence                    1236678889999999999888888889999999998      99999999999999875 45554333333


Q ss_pred             cccchHHHHHHHHHHHHHHHHH
Q 007612          222 EGMWALGFWVSTGSAFAALVLF  243 (596)
Q Consensus       222 ~~~~~~~f~~~~~~~~~~~~~~  243 (596)
                      ..+|++.|++.++..++..++.
T Consensus       183 ~~gw~~~f~i~~~~~~~~~~l~  204 (452)
T PRK11273        183 FNDWHAALYMPAFAAILVALFA  204 (452)
T ss_pred             hccHHHHHHHHHHHHHHHHHHH
Confidence            4589999998776555443333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.92  E-value=8.5e-23  Score=217.47  Aligned_cols=367  Identities=14%  Similarity=0.034  Sum_probs=235.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhc
Q 007612           51 GLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSY  130 (596)
Q Consensus        51 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~  130 (596)
                      +.....++.+.+.+| .+.+++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++..+..+++++.++++++  
T Consensus        19 ~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a--   94 (393)
T PRK09705         19 LNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY--   94 (393)
T ss_pred             HHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC--
Confidence            333333455555555 46789999999999999999999999999999999997 99999999999999999999988  


Q ss_pred             cccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHH
Q 007612          131 LFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSL  210 (596)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  210 (596)
                       ++                    +..++++|+++|++.+...+....++.+++| ++      |+++++.+..+.++|..
T Consensus        95 -~~--------------------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~  146 (393)
T PRK09705         95 -PQ--------------------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGG  146 (393)
T ss_pred             -cc--------------------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHH
Confidence             33                    7778999999999999999999999999986 66      89999999999999999


Q ss_pred             HHhhhhhhhcccc-cchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcc
Q 007612          211 FSNTILGYFEDEG-MWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVID  289 (596)
Q Consensus       211 ~~~~i~g~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  289 (596)
                      +++.+++++.++. +|++.+.+.++..++.+...+...++.++++++                         ++      
T Consensus       147 ~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~------  195 (393)
T PRK09705        147 LGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASSHK-------------------------TT------  195 (393)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC-------------------------CC------
Confidence            9999999887764 899887665444333332222221111100000                         00      


Q ss_pred             cCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccce
Q 007612          290 ANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASL  369 (596)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (596)
                                                             ..+.+     ..++.+.+...+........+.....+.+.+
T Consensus       196 ---------------------------------------~~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~  231 (393)
T PRK09705        196 ---------------------------------------TTPVR-----VVFTPRAWTLGVYFGLINGGYASLIAWLPAF  231 (393)
T ss_pred             ---------------------------------------cCCcc-----cccCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                   00000     0011111111122222233333333333333


Q ss_pred             eEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 007612          370 FVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVE  449 (596)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~  449 (596)
                      +.+  .+.+..      ..+.......++.++...+.++    +.||.+        +++.+.++..+..++...+....
T Consensus       232 l~~--~g~s~~------~ag~~~~~~~i~~i~g~~~~g~----l~~r~~--------~~~~~~~~~~l~~~~~~~~~~~~  291 (393)
T PRK09705        232 YIE--IGASAQ------YSGSLLALMTLGQAAGALLMPA----MARHQD--------RRKLLMLALVLQLVGFCGFIWLP  291 (393)
T ss_pred             HHH--cCCChh------hhhHHHHHHHHHHHHHHHHHHH----HHhhcc--------chHHHHHHHHHHHHHHHHHHHcc
Confidence            321  122211      1222333334444555555553    344443        23345666666666655443221


Q ss_pred             hhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007612          450 CYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAP-DGLKSFGSALCMTSISLGNYVSSLLLT  528 (596)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~gl~~~~~~lg~~lg~~l~~  528 (596)
                                         .+...+  ..++.+++.+...+.......+..+ ++.+|+..|+.+....++..++|.+.+
T Consensus       292 -------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G  350 (393)
T PRK09705        292 -------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSG  350 (393)
T ss_pred             -------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               111111  2244567777777777767777775 678999999999999999999999999


Q ss_pred             HHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 007612          529 MVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCI  580 (596)
Q Consensus       529 ~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~  580 (596)
                      .+.+.+               +++...|.+.+..+++..+..+.+.++++.+
T Consensus       351 ~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK09705        351 VLRSIS---------------GNYLMDWAFHALCVVGLMIITLRFAPARFPQ  387 (393)
T ss_pred             HHHHHh---------------CCchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            887643               2245567777777777777767766666444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.92  E-value=4.1e-23  Score=220.52  Aligned_cols=379  Identities=14%  Similarity=0.064  Sum_probs=241.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH-----HHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAE-----AANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG  116 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~-----~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~  116 (596)
                      ....+.+..++....+....+++|.|++ ++|.+..+     .+++.+...+...++.++.|+++||+ |||++++++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   92 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence            4556666777778888888888888875 58888654     37888889999999999999999997 99999999988


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      +..++.+++.+.                       .+.+.+++.|++.|++.+ ..+...+++.+.+|+++      |++
T Consensus        93 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~  142 (408)
T PRK09874         93 GMGIVMVLMGLA-----------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGW  142 (408)
T ss_pred             HHHHHHHHHHHH-----------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhH
Confidence            888887777665                       237778899999998855 45778888999999888      999


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhcc
Q 007612          197 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRV  276 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (596)
                      +.++.+...++|..++|.+++.+.+..+|++.|++.++..++..+..+...++.++..++++. ..              
T Consensus       143 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------  207 (408)
T PRK09874        143 ALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LH--------------  207 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hH--------------
Confidence            999999999999999999999998888999999988766555544443333221110000000 00              


Q ss_pred             ccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHH-HHHH
Q 007612          277 HLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLP-IWLC  355 (596)
Q Consensus       277 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  355 (596)
                                                      ..+..                   +     ..++.+.++.... ....
T Consensus       208 --------------------------------~~~~~-------------------~-----~~~~~~~~~~~~~~~~~~  231 (408)
T PRK09874        208 --------------------------------MREVV-------------------T-----SLKNPKLVLSLFVTTLII  231 (408)
T ss_pred             --------------------------------HHHHH-------------------H-----hCcCCchHHHHHHHHHHH
Confidence                                            00000                   0     0000111111111 1111


Q ss_pred             hHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHH
Q 007612          356 TILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGL  435 (596)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~  435 (596)
                      ..........++.+..... .....   .....+.+..+..++.++..+..+++    .+|.+        +++.+..+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~g~~~~~~~l~~~~~~~~~g~l----~dr~g--------~~~~~~~~~  295 (408)
T PRK09874        232 QVATGSIAPILTLYVRELA-GNVSN---IAFISGMIASVPGVAALLSAPRLGKL----GDRIG--------PEKILITAL  295 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHh-ccchH---HHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccc--------cchhHHHHH
Confidence            1111111111111100000 00000   00001111122233334444444544    44443        223355566


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHH
Q 007612          436 VIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTS  515 (596)
Q Consensus       436 ~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~  515 (596)
                      .+..++++.....                    .+.+.+.+..++.|++.+...+...++..+..|++.+|+..|+.+..
T Consensus       296 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  355 (408)
T PRK09874        296 IFSVLLLIPMSFV--------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSF  355 (408)
T ss_pred             HHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHH
Confidence            5555555444332                    13444556667889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcc
Q 007612          516 ISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAK  575 (596)
Q Consensus       516 ~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~  575 (596)
                      ..+|..+|+.+.+.+.+                ..+++..|++.+++.+++.+..+...+
T Consensus       356 ~~~g~~~gp~~~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        356 RDIGNVTGPLMGAAISA----------------NYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHHHHHhhHHHHHHHHh----------------hcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999997764                223567888888888887776655443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=2.3e-22  Score=214.19  Aligned_cols=174  Identities=13%  Similarity=0.116  Sum_probs=149.9

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHH
Q 007612           36 KSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQ  115 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~  115 (596)
                      .|+.|+.++.+.+..++.....|.....+|. +.+++|+++.+.++..+.+.++..++.++.|+++||+ |||++++++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~   92 (394)
T PRK10213         15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFA   92 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHH
Confidence            3456776666666666666666666666665 4578999999999999999999999999999999997 9999999999


Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          116 GIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      ++.+++.+++.++                       .+.+.+++.|+++|++.+...+...+++.|++|+++      |+
T Consensus        93 ~~~~~~~~~~~~~-----------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~  143 (394)
T PRK10213         93 VLLTLSCLLVSFA-----------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VP  143 (394)
T ss_pred             HHHHHHHHHHHHH-----------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HH
Confidence            9999988888776                       238889999999999999999999999999999988      99


Q ss_pred             hHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHH
Q 007612          196 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAAL  240 (596)
Q Consensus       196 ~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~  240 (596)
                      ++.++...+.++|..++|.+++++.+..+|++.|++.++..++..
T Consensus       144 ~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        144 KALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998999999998765544433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.92  E-value=1.7e-22  Score=217.86  Aligned_cols=174  Identities=17%  Similarity=0.151  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CChHHHHHHHHHH---HHHHHHHhhhHHHHhhhccCchHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQ---QNNAEAANNVSKW---TGTVYIFSLVGAFLSDSYWGRFKTCAIFQ  115 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~~~~~~~~~~~~~---~~~~~i~~~~~G~laDr~~Gr~~~l~~~~  115 (596)
                      .+....+..+.+.+.... .+++.+++.++++   .+..+.+...+.+   .++..++++++|+++||+ ||||++.++.
T Consensus        23 ~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~  100 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISV  100 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence            344444556666666555 4556667887774   5555544444444   444459999999999997 9999999999


Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          116 GIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      +++.++.++++++.+...+               .......+++.|+++|++.|+..|...++++|++|+++      |+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg  159 (432)
T PRK10406        101 CMMCFGSLVIACLPGYETI---------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KG  159 (432)
T ss_pred             HHHHHHHHHHhhcCCchhH---------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------cc
Confidence            9999999998887221100               00124578899999999999999999999999999998      99


Q ss_pred             hHHHHHHHHHhHHHHHHhhhhhhhc--------ccccchHHHHHHHHHHHH
Q 007612          196 AFFSYFYLALNLGSLFSNTILGYFE--------DEGMWALGFWVSTGSAFA  238 (596)
Q Consensus       196 ~~~~~~~~~~~lg~~~~~~i~g~l~--------~~~~~~~~f~~~~~~~~~  238 (596)
                      +..++.+.+.+.|..+++.+...+.        +.+|||++|++.++..++
T Consensus       160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll  210 (432)
T PRK10406        160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV  210 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence            9999988888888888876654443        257999999986665443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=2e-22  Score=212.25  Aligned_cols=350  Identities=12%  Similarity=0.073  Sum_probs=213.3

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCC
Q 007612           64 LVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNEL  143 (596)
Q Consensus        64 l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (596)
                      ..+.+++++|+|+.+.+++.+.+.++..+++++.|+++||+ |||++++.+......+.......               
T Consensus        13 ~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~---------------   76 (368)
T TIGR00903        13 VLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP---------------   76 (368)
T ss_pred             hHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh---------------
Confidence            33456789999999999999999999999999999999997 99987765544444433212211               


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccc
Q 007612          144 TPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEG  223 (596)
Q Consensus       144 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~  223 (596)
                              .+...++++|+++|++.+.. +.....++|++|+++      |++++++.+.+..+|..+++.+++++.+..
T Consensus        77 --------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~  141 (368)
T TIGR00903        77 --------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAG  141 (368)
T ss_pred             --------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                    23788999999999999864 566666799999988      999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCcccc
Q 007612          224 MWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLH  303 (596)
Q Consensus       224 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  303 (596)
                      |||+.|++.++..++..++.+...|+.++.+++...                                           .
T Consensus       142 gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~-------------------------------------------~  178 (368)
T TIGR00903       142 GLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFG-------------------------------------------F  178 (368)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc-------------------------------------------h
Confidence            999999986665544444333332221111000000                                           0


Q ss_pred             ccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccceeEeeeccccccccc
Q 007612          304 THGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSN  383 (596)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (596)
                      .   +.. +                  +++    +..+++..+......++....++....+.++++..  .+.+..   
T Consensus       179 ~---~~~-~------------------~~~----~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~--~g~s~~---  227 (368)
T TIGR00903       179 K---DAV-K------------------EFG----ALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP--AGLEDI---  227 (368)
T ss_pred             H---HHH-H------------------HHH----HHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCChH---
Confidence            0   000 0                  000    00111222233333444455555555666665532  112211   


Q ss_pred             cccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC
Q 007612          384 FRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHC  463 (596)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~  463 (596)
                          .....   .+..+........+.++..|| + +      +...+....++.++.....+..               
T Consensus       228 ----~~~~~---~l~~~~g~~g~~~~~d~~~r~-~-~------r~~~~~~~~~~~a~~~~~~~~~---------------  277 (368)
T TIGR00903       228 ----AGDAV---ALAILAGLIGVAVIPDRVARA-G-L------RSIYIRAAALLIAAFFLALAFE---------------  277 (368)
T ss_pred             ----HHHHH---HHHHHHHHHHHHHhhHHhhhh-h-h------HHHHHHHHHHHHHHHHHHHHHc---------------
Confidence                11111   111111111122232232222 1 1      1122222333333333333321               


Q ss_pred             CCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 007612          464 EGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWV  543 (596)
Q Consensus       464 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~  543 (596)
                           .+....+..+.+.++......+..+++..|.+|++.||+++|+.+..+++|+..++.+.+.+..           
T Consensus       278 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-----------  341 (368)
T TIGR00903       278 -----LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-----------  341 (368)
T ss_pred             -----cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-----------
Confidence                 1222333344555566666667788999999999999999999999999999999998886541           


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 007612          544 PGNLNKGHLDRFYFLLAGLTTVDFVVYI  571 (596)
Q Consensus       544 ~~~~~~~~~~~~f~~~a~i~~i~~~~~~  571 (596)
                             +.+..|.++++..+++.+..+
T Consensus       342 -------~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       342 -------SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHH
Confidence                   234578888888888776654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.92  E-value=5.2e-23  Score=218.37  Aligned_cols=403  Identities=12%  Similarity=0.047  Sum_probs=250.6

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHH
Q 007612           80 ANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYL  159 (596)
Q Consensus        80 ~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  159 (596)
                      +.+++++.++.++++.++|.++||+ |||..+.+..++..++.+++.++...++                    ..++++
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~~--------------------~e~li~  121 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAPS--------------------FEMLIL  121 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhhh--------------------HHHHHH
Confidence            6677788999999999999999997 9999999999998888888887755444                    889999


Q ss_pred             HHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhh-h-hcccccchHHHHHHHHHHH
Q 007612          160 SIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILG-Y-FEDEGMWALGFWVSTGSAF  237 (596)
Q Consensus       160 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g-~-l~~~~~~~~~f~~~~~~~~  237 (596)
                      +|++.|+..|......+.++.|..|++.      ||....+...+.++|..++..++. . +-....|.+.+.+..+..+
T Consensus       122 GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~  195 (485)
T KOG0569|consen  122 GRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPAL  195 (485)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999      999999999999999999965554 2 3345568888887776665


Q ss_pred             HHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchh-cccCCCCCCCCCccccccccchhhhhhhh
Q 007612          238 AALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYV-IDANDSSTNGNRNMLHTHGFKFLDRAAYI  316 (596)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (596)
                      +.++...+                                .||||+++.. +++.++|.+.++..+..++.+..+.....
T Consensus       196 ~~l~~l~~--------------------------------~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~  243 (485)
T KOG0569|consen  196 LQLALLPF--------------------------------LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLR  243 (485)
T ss_pred             HHHHHHhc--------------------------------CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence            55554433                                8999999988 67777777777776655432211111000


Q ss_pred             ccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccceeEeeeccccccccccccC-Cccccccc
Q 007612          317 SSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIP-PASMSSFD  395 (596)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  395 (596)
                      +.++ ++++..+...++...+. -..++.....+.+.+.+..-......+++.....    +.   |+... ....+...
T Consensus       244 e~~~-~~~~~~~~~sl~~~~~~-~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~----~a---G~~~~~a~~an~~~  314 (485)
T KOG0569|consen  244 EIEE-EELEKKKQISLRQLLKN-PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFK----TA---GFTPEEAQYANLGI  314 (485)
T ss_pred             HHHH-hccccccCCcHHHHhcC-cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHH----Hc---CCCHHHHHHHHHHH
Confidence            0000 00111111122110000 0112222111212222111111111111111100    00   11111 11112222


Q ss_pred             hhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHH
Q 007612          396 ILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQV  475 (596)
Q Consensus       396 ~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (596)
                      ....++...+...+++    |.+ ||       ..++++..++.+..+++..........           .++-.+..+
T Consensus       315 g~v~~~~t~~~~~lid----~~g-RR-------pLll~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~y~~i  371 (485)
T KOG0569|consen  315 GIVNLLSTLVSPFLID----RLG-RR-------PLLLISLSLMAVALLLMSIALFLSNSF-----------GSWLSYLCI  371 (485)
T ss_pred             HHHHHHHHHHHHHHHH----hcC-Cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHH
Confidence            2223333333333333    444 32       346677776666665554433221000           001111223


Q ss_pred             HHHHHHHHHHHhh-hhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhH
Q 007612          476 PQYALIGASEVFM-YVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDR  554 (596)
Q Consensus       476 ~~~~l~g~~~~~~-~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~  554 (596)
                      ...+++.++..+. .|..+-+.+|.+|++.|+.++++..+.+++.+++-......+.+..               +.  +
T Consensus       372 ~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~---------------g~--~  434 (485)
T KOG0569|consen  372 AAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI---------------GP--Y  434 (485)
T ss_pred             HHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cc--h
Confidence            3344444444444 5888889999999999999999999999999999888888776533               11  4


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccchhhhhhhcc
Q 007612          555 FYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESN  590 (596)
Q Consensus       555 ~f~~~a~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~  590 (596)
                      +|..+++.+++.++..+...||+|+|+.++..++.+
T Consensus       435 ~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  435 VFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             hhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence            788889999999999999999999998877655433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.92  E-value=3.1e-22  Score=219.41  Aligned_cols=175  Identities=17%  Similarity=0.095  Sum_probs=128.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH-HHH-----HHHHHHHHHHHHhhhHHHHhhhccCchHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAE-AAN-----NVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAI  113 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~-~~~-----~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~  113 (596)
                      ++.++...+..+++.+.+..+ .+..+++.+.++.+..+ ..+     ..++..++..+++++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVY-GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            345566667777777666554 44556777777533211 122     24666788899999999999997 99999999


Q ss_pred             HHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccc
Q 007612          114 FQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHS  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  193 (596)
                      +.++++++.++++++.+...+.               -..+..++++|+++|++.|+..+...++++|++|+++      
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g---------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------  151 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIG---------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------  151 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHH---------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------
Confidence            9999999999999882211000               0001248899999999999999999999999999998      


Q ss_pred             hhhHHHHHHHHHhHHHHHHhhhhhhhc--------ccccchHHHHHHHHHHH
Q 007612          194 KVAFFSYFYLALNLGSLFSNTILGYFE--------DEGMWALGFWVSTGSAF  237 (596)
Q Consensus       194 r~~~~~~~~~~~~lg~~~~~~i~g~l~--------~~~~~~~~f~~~~~~~~  237 (596)
                      |++..++...+..+|..+|+.+...+.        ..+|||+.|++.++..+
T Consensus       152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence            999999988888888887775544332        25799999998665433

>PRK09952 shikimate transporter; Provisional

Probab=99.92  E-value=4.2e-22  Score=215.16  Aligned_cols=175  Identities=15%  Similarity=0.099  Sum_probs=129.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHH-----HHHHHHHHHhhhHHHHhhhccCchHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVL--QQNNAEAANNVS-----KWTGTVYIFSLVGAFLSDSYWGRFKTC  111 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g~~~~~~~~~~~-----~~~~~~~i~~~~~G~laDr~~Gr~~~l  111 (596)
                      ++|.++..++..+.+.+....+....+.++.+++  +.++.+ +++.+     ...++..++.++.|+++||+ |||+++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l   97 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence            3456666667777777766655555555666554  676663 44432     33455668888899999997 999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccc
Q 007612          112 AIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEG  191 (596)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  191 (596)
                      +++.+++.++.++++++.+...+               .......++++|+++|++.|+..+....++.|++|+++    
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~----  158 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTI---------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK----  158 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHH---------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC----
Confidence            99999999999999987221100               00012258889999999999999999999999999988    


Q ss_pred             cchhhHHHHHHHHHhHHHHHHhhhhhhhc--------ccccchHHHHHHHHHH
Q 007612          192 HSKVAFFSYFYLALNLGSLFSNTILGYFE--------DEGMWALGFWVSTGSA  236 (596)
Q Consensus       192 ~~r~~~~~~~~~~~~lg~~~~~~i~g~l~--------~~~~~~~~f~~~~~~~  236 (596)
                        |++..+..+.+..+|..++..+..++.        +.+|||++|++.++..
T Consensus       159 --rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~  209 (438)
T PRK09952        159 --KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV  209 (438)
T ss_pred             --CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence              999999888888999888877666554        2579999998876543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=3.3e-22  Score=213.76  Aligned_cols=174  Identities=11%  Similarity=0.044  Sum_probs=139.9

Q ss_pred             chHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAF---FGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG  116 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~  116 (596)
                      .+..++.++....+...+   ..+.+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||+++++..
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~   86 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVA   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence            334444444444444433   334444443 5578999999999999999999999999999999997 99999999998


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      +..++.+++.++   +                    +.+.+++.|++.|++.+...+...+.+.|.+|+++      |.+
T Consensus        87 ~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~  137 (406)
T PRK15402         87 FFILTCLAILLA---Q--------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIK  137 (406)
T ss_pred             HHHHHHHHHHHH---c--------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHH
Confidence            888888887776   2                    37778899999999999888889999999999888      888


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHH
Q 007612          197 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      ..++.+....+|..++|.+++++.+..+|++.|++.++..++..+..+
T Consensus       138 ~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        138 ITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLW  185 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            899988888899999999999998888999999887766655544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.91  E-value=1e-22  Score=221.02  Aligned_cols=375  Identities=11%  Similarity=-0.009  Sum_probs=222.4

Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCC
Q 007612           66 LFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTP  145 (596)
Q Consensus        66 ~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (596)
                      ..+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++.++++++.                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            345679999999999999999999999999999999997 999999999988888888887762                


Q ss_pred             CCCCCchhHHHHHH-HHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccccc
Q 007612          146 CGTHSSLEICLFYL-SIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGM  224 (596)
Q Consensus       146 ~~~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~  224 (596)
                             +.+.+++ .|++.|++.+...+...+++.++++ ++      |+++.++.+.+.++|..++|.+++++.+.+|
T Consensus       106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892       106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence                   2555544 4688899998776777788889885 66      9999999999999999999999999999899


Q ss_pred             chHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccc
Q 007612          225 WALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHT  304 (596)
Q Consensus       225 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  304 (596)
                      ||++|++.+++.++..+..++..+..+..+....                     ++.+    ..+.+  .. .++....
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------------~~~~----~~~~~--~~-~~~~~~~  223 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKS---------------------KSKE----GLPPD--GS-TKKLSKK  223 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc---------------------cccc----cCCCC--Cc-ccccccc
Confidence            9999999887666554444433322110000000                     0000    00000  00 0000000


Q ss_pred             cccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhH-HHHHHhHhHhhhhccccceeEeeeccccccccc
Q 007612          305 HGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLL-PIWLCTILYSVVFTQMASLFVEQGAAMKTTVSN  383 (596)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (596)
                      ...+                   ...++.  . ....+.+..+... ..++....+......++.+...  .+.+..   
T Consensus       224 ~~~~-------------------~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~g~s~~---  276 (455)
T TIGR00892       224 STAE-------------------KINRFL--D-FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD--KGVDEY---  276 (455)
T ss_pred             chhh-------------------hhhhhc--c-hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH--cCCCHH---
Confidence            0000                   000000  0 0001112222111 1111111111111111111110  111111   


Q ss_pred             cccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC
Q 007612          384 FRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHC  463 (596)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~  463 (596)
                         ..+.+..+..++.++..++.+++.++.  +..   +   .+...+..+.++.+++++.....               
T Consensus       277 ---~~g~~~~~~~~~~~~~~~~~g~l~d~~--~~~---~---~~~~~~~~~~~~~~l~~ll~~~~---------------  330 (455)
T TIGR00892       277 ---EAAFLLSIIGFVDIFARPSCGLIAGLK--WIR---P---HVQYLFSFALLFNGLTHLLCALA---------------  330 (455)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHhccc--ccC---H---HHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence               122233333444455555555443321  010   0   01222333334333433333221               


Q ss_pred             CCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 007612          464 EGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWV  543 (596)
Q Consensus       464 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~  543 (596)
                           .+.+++++..++.|++.+...+..++++.+.+|++.+|+++|++++...+|+.+|+.+.+.+.+..         
T Consensus       331 -----~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~---------  396 (455)
T TIGR00892       331 -----GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT---------  396 (455)
T ss_pred             -----chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc---------
Confidence                 245556667788899998888999999999999999999999999999999999999999665421         


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHHHHHHh
Q 007612          544 PGNLNKGHLDRFYFLLAGLTTVDFVVYIA  572 (596)
Q Consensus       544 ~~~~~~~~~~~~f~~~a~i~~i~~~~~~~  572 (596)
                            ++++..|+..+++.+++.+..++
T Consensus       397 ------g~~~~~f~~~~~~~li~~~~~~~  419 (455)
T TIGR00892       397 ------KNYKYIFYASGSIVVSAGLFLAI  419 (455)
T ss_pred             ------CCcchHHHHhhHHHHHHHHHHHH
Confidence                  23456777777776666554443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.91  E-value=2.1e-22  Score=216.49  Aligned_cols=164  Identities=15%  Similarity=0.185  Sum_probs=142.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      ++.+....+..+......+.. .+...++.+++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~   94 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            345555666666666666554 4444567789999999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ++.++++++                       ++.+.++++|++.|++.|...+....++.|.+|+++      |+++.+
T Consensus        95 ~~~~~~~~~-----------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~  145 (426)
T PRK12307         95 VGTGLSGLA-----------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASA  145 (426)
T ss_pred             HHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhh
Confidence            999888877                       337889999999999999999999999999999998      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHH
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTG  234 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~  234 (596)
                      +++.+..+|.++++.+.+.+.+..+|++.|++...
T Consensus       146 ~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        146 FLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             HHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence            99999999999999999999888999999987544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.91  E-value=1.4e-22  Score=215.39  Aligned_cols=172  Identities=16%  Similarity=0.183  Sum_probs=148.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHH
Q 007612           37 SGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG  116 (596)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~  116 (596)
                      +.+++.+....+..+......+.+....+ .+++++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            45667777788888888877776655555 56789999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      +.+++.+++.++   +                    ++..+++.|++.|++.+...+...+++.|++|+++      |++
T Consensus        86 ~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~  136 (405)
T TIGR00891        86 LFSAGTLACGFA---P--------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNK  136 (405)
T ss_pred             HHHHHHHHHHHh---c--------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhH
Confidence            888888888776   2                    37788999999999999999999999999999988      999


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhccccc--chHHHHHHHHHHHHH
Q 007612          197 FFSYFYLALNLGSLFSNTILGYFEDEGM--WALGFWVSTGSAFAA  239 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i~g~l~~~~~--~~~~f~~~~~~~~~~  239 (596)
                      +.++.+.+.++|..+++.+++.+.+..+  |++.|++.++..++.
T Consensus       137 ~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       137 ASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            9999999999999999999998877665  999998765444433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.91  E-value=1.1e-22  Score=213.68  Aligned_cols=365  Identities=10%  Similarity=0.002  Sum_probs=226.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 007612           49 NQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLS  128 (596)
Q Consensus        49 ~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~  128 (596)
                      .........|.+.. +.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++.++
T Consensus        11 ~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~   88 (377)
T TIGR00890        11 IMCFTSGYVYTWTL-LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA   88 (377)
T ss_pred             HHHHHhhHHhhhhh-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH
Confidence            33333333555544 45677889999999999999999999999999999999997 99999999999999999888887


Q ss_pred             hccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHH
Q 007612          129 SYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLG  208 (596)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  208 (596)
                                             .+.+.++++|++.|++.+...+.....+.+++| ++      |+++.++...+.++|
T Consensus        89 -----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g  138 (377)
T TIGR00890        89 -----------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLG  138 (377)
T ss_pred             -----------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchh
Confidence                                   347889999999999999888888888888886 45      889999999999999


Q ss_pred             HHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhc
Q 007612          209 SLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVI  288 (596)
Q Consensus       209 ~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  288 (596)
                      ..+++.+.+.+.+..+|++.|++.++..++..+..+...++.++++.+++.                    +.       
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~-------  191 (377)
T TIGR00890       139 SFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI--------------------EV-------  191 (377)
T ss_pred             HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc--------------------cc-------
Confidence            888776777777778999999987766555544433332221110000000                    00       


Q ss_pred             ccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccc
Q 007612          289 DANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMAS  368 (596)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (596)
                                   . ....   +..                        +..++++.+......+.............. 
T Consensus       192 -------------~-~~~~---~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  229 (377)
T TIGR00890       192 -------------S-VKDY---TVW------------------------EMLRTPQFWVLYLSFFLNAVSGLLLIGLYK-  229 (377)
T ss_pred             -------------c-hhhh---hHH------------------------HHHcCccHHHHHHHHHHHhHHHHHHHHHHH-
Confidence                         0 0000   000                        000011111111111111111111111111 


Q ss_pred             eeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 007612          369 LFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIV  448 (596)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~  448 (596)
                      .+.. ..+.+.      .....+.....+..++..++.+++.+    |.+        +++.+.++..+.+++++.....
T Consensus       230 ~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g--------~~~~~~~~~~~~~~~~~~~~~~  290 (377)
T TIGR00890       230 PYGQ-SLGLSD------GFLVLAVSISSIFNGGGRPFLGALSD----KIG--------RQKTMSIVFGISAVGMAAMLFI  290 (377)
T ss_pred             HHHH-HcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHh--------hhhhhhHHHHHHHHHHHHHHHc
Confidence            1111 011110      01122333334445555555565544    433        2223566666666666555442


Q ss_pred             HhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007612          449 ECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLT  528 (596)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~  528 (596)
                      .                  ..+....+...++.+++.+...+...+++.|.+|++.||++.|+.+....+|+.+++.+.+
T Consensus       291 ~------------------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g  352 (377)
T TIGR00890       291 P------------------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIAS  352 (377)
T ss_pred             c------------------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence            1                  1122223334455666666666777788999999999999999999999999999999999


Q ss_pred             HHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 007612          529 MVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDF  567 (596)
Q Consensus       529 ~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~  567 (596)
                      .+.+.                .+++..|++.+++++++.
T Consensus       353 ~l~~~----------------~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       353 HALTE----------------IGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHhh----------------hchhhHHHHHHHHHHHhc
Confidence            77652                234567777666666543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.91  E-value=3.9e-22  Score=210.19  Aligned_cols=169  Identities=15%  Similarity=0.027  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHH-HHHHHHHHHHHH
Q 007612           47 LLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAI-FQGIFVIGLVLL  125 (596)
Q Consensus        47 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~-~~~~~~~~~~~~  125 (596)
                      .+..++...+.....+.++.|+++++|.|+.+.+++.+.+.+...+..++.|+++||+ ||||.+++ +.+...++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            3456677777778889999999999999999999999999999999999999999997 99887655 444555555666


Q ss_pred             HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH--HHHHHH
Q 007612          126 SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF--FSYFYL  203 (596)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~  203 (596)
                      .++                       ++++.+++.|++.+.+.+...|...++..|..|++.      |...  .+..+.
T Consensus        82 ~~~-----------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~  132 (375)
T TIGR00899        82 AWN-----------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRA  132 (375)
T ss_pred             Hhc-----------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHH
Confidence            655                       236778888888887777778888888888877665      5543  577778


Q ss_pred             HHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          204 ALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       204 ~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      ..++|..++|.+++++.+..+|++.|++.++..++..+..+.
T Consensus       133 ~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       133 QISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999998899999999887765555444433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=1.9e-22  Score=220.44  Aligned_cols=402  Identities=13%  Similarity=0.084  Sum_probs=242.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGL  122 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~  122 (596)
                      +..+++..+............+| ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.++++.++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            44455555555555544444444 56678999999999999999999999999999999997 99999999999999999


Q ss_pred             HHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHH
Q 007612          123 VLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFY  202 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  202 (596)
                      ++++++   +                    +...++++|+++|++.+...+...+++.|.+|+++      |++++++++
T Consensus        82 ~~~~~~---~--------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~  132 (485)
T TIGR00711        82 LLCGVA---P--------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWG  132 (485)
T ss_pred             HHHhCc---C--------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHH
Confidence            888876   2                    37789999999999999999999999999999998      999999999


Q ss_pred             HHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHH-HHHH-HHHHHhhccccCC
Q 007612          203 LALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARF-CQVI-VAATKKWRVHLSA  280 (596)
Q Consensus       203 ~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~p~  280 (596)
                      ....+|..++|.+++++.++.+|++.|++.....++..++.....++.++++.++...... .... ...... .....+
T Consensus       133 ~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~-~~~~~~  211 (485)
T TIGR00711       133 LTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLY-GLSEGP  211 (485)
T ss_pred             HHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHH-HHhhCC
Confidence            9999999999999999999999999999877665555544444333322111111111100 0000 000000 000000


Q ss_pred             CcccchhcccCCCCCCCCCccccccccch-hhhh-hhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHh
Q 007612          281 EGEDLYVIDANDSSTNGNRNMLHTHGFKF-LDRA-AYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTIL  358 (596)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (596)
                      ...|.                ........ .... ......   ..+...+.|...  ....++++.....+..+.....
T Consensus       212 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  270 (485)
T TIGR00711       212 ERGWF----------------DSNEILILSITGLVAIIAFV---VWELTDDNPLVD--LRLFKYRNFTIGCVYMSLLGLG  270 (485)
T ss_pred             CCCCC----------------CchHHHHHHHHHHHHHHHHH---HHHHcCCCCccC--HHHHcCCChHHHHHHHHHHHHH
Confidence            00000                00000000 0000 000000   000001111110  0011111111111112222222


Q ss_pred             HhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHH
Q 007612          359 YSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIA  438 (596)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~  438 (596)
                      +.......+. +.++..+.+..      ..+.......++.++..++.+++    .+|.+        +++.+.+|..+.
T Consensus       271 ~~~~~~~~p~-~~~~~~g~s~~------~~g~~~~~~~~~~~~~~~~~g~l----~~r~~--------~~~~~~~g~~~~  331 (485)
T TIGR00711       271 LYGSFYLLPL-YLQQVLGYTAL------QAGLHILPVGLAPMLSSPIAGRM----GDKID--------PRKLVTIGLILY  331 (485)
T ss_pred             HHHHHHHHHH-HHHHhcCCCHH------HHHHHHHHHHHHHHHHHHHHHHH----HhhcC--------cHHHHHHHHHHH
Confidence            2222222221 11111111111      12233333445555566666644    34443        334567777777


Q ss_pred             HHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 007612          439 IVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISL  518 (596)
Q Consensus       439 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~l  518 (596)
                      +++...+.+..                .+..+.+......++.|++.+...++......+..|++.+|+++|+.++.+.+
T Consensus       332 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  395 (485)
T TIGR00711       332 AVGFYWRAFTF----------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQL  395 (485)
T ss_pred             HHHHHHHhccC----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHH
Confidence            77776655211                11234455566678899999998888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 007612          519 GNYVSSLLLTMVMK  532 (596)
Q Consensus       519 g~~lg~~l~~~i~~  532 (596)
                      |+.+|+.+.+.+.+
T Consensus       396 g~~ig~~i~g~~~~  409 (485)
T TIGR00711       396 GGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999997765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=4.3e-23  Score=210.04  Aligned_cols=403  Identities=14%  Similarity=0.063  Sum_probs=253.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVN---LVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      -+.+++..+.....+|.+.-.   ..+++.++.++|..|.|.+.+.+.+.+.++..+.|.++||. +.|+.+.+++++.+
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsa  105 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHH
Confidence            355666666666777766543   34678889999999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      +..++++++.                       +...+.+..++.|...|.-.|.+...+..++|+++      ||+..+
T Consensus       106 i~nil~Gfs~-----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~s  156 (448)
T COG2271         106 IVNILFGFSP-----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWS  156 (448)
T ss_pred             HHHHHHhhhh-----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEE
Confidence            9999999982                       37788888899999999999999999999999999      999999


Q ss_pred             HHHHHHhHHHHHHhhhh--hhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccc
Q 007612          200 YFYLALNLGSLFSNTIL--GYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVH  277 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~--g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (596)
                      +.+.+-|+|+.+.|++.  +++..+++|+..|+++++++++..++.+...+..+++..-++. +.               
T Consensus       157 iWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~i-e~---------------  220 (448)
T COG2271         157 IWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI-EE---------------  220 (448)
T ss_pred             EehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCH-HH---------------
Confidence            99999999999999999  8999889999999999987766655555444432222110000 00               


Q ss_pred             cCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhH
Q 007612          278 LSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTI  357 (596)
Q Consensus       278 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (596)
                      ..+++.+.++.                                  + ++.+....+....+-+-+.|.++..  .+....
T Consensus       221 ~~~d~~e~~~~----------------------------------~-~~~~~ls~~~i~~~YVL~Nk~iW~l--a~a~vf  263 (448)
T COG2271         221 YRGDPLEIYEE----------------------------------E-KENEGLTAWQIFVKYVLKNKLIWLL--ALANVF  263 (448)
T ss_pred             hhcCchhhhhh----------------------------------h-ccCCCccHHHHHHHHHHcChHHHHH--HHHHHH
Confidence            01111111000                                  0 0000000000000001111222211  112222


Q ss_pred             hHhhhh--ccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHH
Q 007612          358 LYSVVF--TQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGL  435 (596)
Q Consensus       358 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~  435 (596)
                      +|.+-+  ....+.|..+..+++..      ...........+.+....+.+++.|++.+..  |.       ..-.+.+
T Consensus       264 vYivR~gi~dW~p~YL~e~k~~s~~------~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr--R~-------p~~~i~~  328 (448)
T COG2271         264 VYVVRYGINDWGPLYLSEVKGFSLV------KANWAISLFEVAGLPGTLLAGWLSDKLFKGR--RG-------PMALIFM  328 (448)
T ss_pred             HHHHHHHHhhhHHHHHHHhcCCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHhcccc--cc-------hHHHHHH
Confidence            222222  11223334333444432      1222333345666777777787777776431  11       1223333


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHH
Q 007612          436 VIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTS  515 (596)
Q Consensus       436 ~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~  515 (596)
                      ++..++++.+...                  +..+.+.....++.+|+..-.-.-..-....|..|++..|++.|+...+
T Consensus       329 ~~i~~~~~~~w~~------------------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf  390 (448)
T COG2271         329 LLITASLVLYWLA------------------PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLF  390 (448)
T ss_pred             HHHHHHHHHHHcC------------------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhH
Confidence            3444444444332                  1124444445555555433222222234677999999999999999999


Q ss_pred             HHH-HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 007612          516 ISL-GNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWY  577 (596)
Q Consensus       516 ~~l-g~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~  577 (596)
                      ..+ |+.++....+.+.+.                .++...|.++.+.++++.+++....+..
T Consensus       391 ~Yl~Ga~~a~~~~g~i~d~----------------~gW~g~Fi~~~~~a~l~~lll~~~~~~~  437 (448)
T COG2271         391 AYLIGAALAGLPLGYIADT----------------WGWDGGFIVLSIAALLAILLLLPVWNAE  437 (448)
T ss_pred             HHHhhHHhcCCcceeeEec----------------CCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence            998 777777666655432                2335678777777777777776665543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.91  E-value=1.3e-22  Score=221.44  Aligned_cols=175  Identities=13%  Similarity=0.064  Sum_probs=134.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF  118 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~  118 (596)
                      +.+.++......++.....+.+.+.++ ++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            445555555556666666666655544 56789999999999999999999999999999999997 9999999998888


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .++.++++++   +                    +...++++|++.|++.+... ....++++++|+++      |++++
T Consensus       112 ~~~~~~~~~~---~--------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~  161 (476)
T PLN00028        112 APAVFCMSLV---S--------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTAN  161 (476)
T ss_pred             HHHHHHHHHh---c--------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHH
Confidence            8888877776   2                    26778889999999887654 45567899999998      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhc----c-----cccchHHHHHHHHHHHHHHHHHHh
Q 007612          199 SYFYLALNLGSLFSNTILGYFE----D-----EGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~----~-----~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      ++.+...++|+.+++.+.+.+.    +     ..|||+.|++.+++.++..+..++
T Consensus       162 g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        162 GIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9988777888877766655432    1     258999999877666555444443

>PRK03699 putative transporter; Provisional

Probab=99.91  E-value=7.3e-22  Score=210.36  Aligned_cols=173  Identities=10%  Similarity=0.109  Sum_probs=145.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      +++|..+..++..+......+.+...++. +.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            55677777777777777766666666655 5678999999999999999999999999999999997 999999999988


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      ..++.+++.++                       ++...+++.|++.|++.|...+...+++.|.+|+++      |++.
T Consensus        82 ~~i~~~l~~~~-----------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~  132 (394)
T PRK03699         82 MILAVAGLMFS-----------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSR  132 (394)
T ss_pred             HHHHHHHHHHc-----------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHH
Confidence            88888888776                       237788999999999999888999999999998888      9999


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhhcc-cccchHHHHHHHHHHHHHHH
Q 007612          198 FSYFYLALNLGSLFSNTILGYFED-EGMWALGFWVSTGSAFAALV  241 (596)
Q Consensus       198 ~~~~~~~~~lg~~~~~~i~g~l~~-~~~~~~~f~~~~~~~~~~~~  241 (596)
                      .+..+...++|+.++|.+.+++.. ..+||+.|.+.++..++..+
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~  177 (394)
T PRK03699        133 LLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            998888889999999998887754 57999999887665544433

>TIGR00898 2A0119 cation transport protein

Probab=99.91  E-value=1e-22  Score=224.01  Aligned_cols=145  Identities=17%  Similarity=0.183  Sum_probs=126.2

Q ss_pred             HHHhhCCC---hHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCC
Q 007612           68 LTRVLQQN---NAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELT  144 (596)
Q Consensus        68 l~~~lg~~---~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (596)
                      +.++++++   ..+.++..+.+.++..++.++.|+++||+ |||++++++.++..++.++.+++   +            
T Consensus       115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~---~------------  178 (505)
T TIGR00898       115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS---P------------  178 (505)
T ss_pred             EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc---c------------
Confidence            45678888   88999999999999999999999999997 99999999999998888888877   3            


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccccc
Q 007612          145 PCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGM  224 (596)
Q Consensus       145 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~  224 (596)
                              +++.++++|++.|++.+...+...+++.|++|+++      |+.+.++...+..+|.+++|.++..+.+   
T Consensus       179 --------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---  241 (505)
T TIGR00898       179 --------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---  241 (505)
T ss_pred             --------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---
Confidence                    38889999999999999999999999999999998      9999999999999999999988766543   


Q ss_pred             chHHHHHHHHHHHHHHHHHHh
Q 007612          225 WALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       225 ~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      ||+.|++.++..++..+..++
T Consensus       242 wr~~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       242 WRWLQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999998877665555544433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.91  E-value=9.3e-22  Score=208.67  Aligned_cols=172  Identities=16%  Similarity=0.119  Sum_probs=149.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      ++.++...+..++.....+...+.+|. +.+++|.+..+.++..+.+.++..+++++.|+++||+ |||+++.++.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   79 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCV   79 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence            356677788888888887777777765 5678999999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ++.++++++                       ++.+.+++.|++.|++.+...+...+++.+++|+++      |+++++
T Consensus        80 ~~~~l~~~~-----------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  130 (382)
T PRK10091         80 IGNAMFTLS-----------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVA  130 (382)
T ss_pred             HHHHHHHHh-----------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHH
Confidence            999888877                       238889999999999999888888889999999888      889999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHH
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVL  242 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~  242 (596)
                      ++..+..+|..++|.+++++.+..+||++|++.++..++..+.
T Consensus       131 ~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091        131 GMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988899999999877655544443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=6.7e-23  Score=213.55  Aligned_cols=171  Identities=22%  Similarity=0.341  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007612           47 LLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLS  126 (596)
Q Consensus        47 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~  126 (596)
                      ++..+..........+.++.++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            3455556666666666676688889999999999999999999999999999999997 999999999999888855555


Q ss_pred             hhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHh
Q 007612          127 LSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALN  206 (596)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  206 (596)
                      ++   ++                    .+.++++|++.|++.+...+...+++.|++|+++      |++.+++.+...+
T Consensus        81 ~~---~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~  131 (352)
T PF07690_consen   81 FA---SN--------------------FWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFS  131 (352)
T ss_dssp             HH---CC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHH
T ss_pred             hh---hh--------------------HHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhh
Confidence            54   22                    5589999999999999999999999999999988      9999999999999


Q ss_pred             HHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcC
Q 007612          207 LGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       207 lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  247 (596)
                      +|..++|.+++++.+..+|++.|++.++..++..++.....
T Consensus       132 ~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~  172 (352)
T PF07690_consen  132 LGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFL  172 (352)
T ss_dssp             HHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhh
Confidence            99999999999999889999999998887776665433333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.91  E-value=2.8e-22  Score=218.31  Aligned_cols=379  Identities=13%  Similarity=0.097  Sum_probs=226.6

Q ss_pred             hhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCC
Q 007612           71 VLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHS  150 (596)
Q Consensus        71 ~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (596)
                      +++++..+.+++.+.+.++..++++++|+++||+ |||+++.++.++..++.+++.++..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6789999999999999999999999999999997 9999999999888888777655411                    


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc-ccchHHH
Q 007612          151 SLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE-GMWALGF  229 (596)
Q Consensus       151 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~-~~~~~~f  229 (596)
                       .+...+++.|+++|++.+...|....++.+++|+++      |+++.++.+.+.++|..++|.+++++.+. .+|+++|
T Consensus       129 -~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f  201 (465)
T TIGR00894       129 -GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIF  201 (465)
T ss_pred             -cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeh
Confidence             125678899999999999999999999999999999      99999999999999999999999999888 4999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccccccch
Q 007612          230 WVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKF  309 (596)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  309 (596)
                      ++.++..++..++.+...++.+++++..++.+.  +.                                           
T Consensus       202 ~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~-------------------------------------------  236 (465)
T TIGR00894       202 YVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK--KY-------------------------------------------  236 (465)
T ss_pred             hhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH--HH-------------------------------------------
Confidence            988766555544444333322211111110000  00                                           


Q ss_pred             hhhhhhhccccccccccCCCCCCcccCccchhhhhhhh-hhHHHHHHhHhHhhhhccccceeEeeeccccccccccccCC
Q 007612          310 LDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCIL-RLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPP  388 (596)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (596)
                      .+.     ..+.+..+...+.+|+     .+...+.++ ..+..++....++....+++.++.+ ..+.+..      ..
T Consensus       237 i~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~-~~g~s~~------~~  299 (465)
T TIGR00894       237 INS-----SLQGQKGSTRQSLPIK-----AIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISW-VLRVSGK------EN  299 (465)
T ss_pred             HHh-----hcccccCCCCCCCCHH-----HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcChH------Hh
Confidence            000     0000000000011221     111112222 1222222233333333333333221 1122211      22


Q ss_pred             ccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCce
Q 007612          389 ASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASS  468 (596)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (596)
                      +....+..++..+...+.+++.+++.+|..    ......+++..+......+...+....                 ..
T Consensus       300 g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~  358 (465)
T TIGR00894       300 GLLSSLPYLFAWLCSIFAGYLADFLKSSKT----LSLTAARKIFNGIGGLGPGIFAYALPY-----------------LS  358 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHH-----------------cC
Confidence            334444455666667777777666543321    000011222222222111211111110                 01


Q ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC
Q 007612          469 LSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLN  548 (596)
Q Consensus       469 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~  548 (596)
                      .+....+..+.+.+.+.+...+..+....+..|+ .+|.++|+.++.+.+|+.++|.+.+.+.+..             .
T Consensus       359 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~-------------~  424 (465)
T TIGR00894       359 AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQD-------------S  424 (465)
T ss_pred             CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCC-------------C
Confidence            1233333444444555555555565666677775 8999999999999999999998888554310             1


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHhhc
Q 007612          549 KGHLDRFYFLLAGLTTVDFVVYIACA  574 (596)
Q Consensus       549 ~~~~~~~f~~~a~i~~i~~~~~~~~~  574 (596)
                      .+.+...|++.+++.+++.+++.+..
T Consensus       425 ~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       425 KNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             chHHHHHHHHHHHHHHHHHHHeeeee
Confidence            23467788888888888877666543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.91  E-value=5.8e-22  Score=205.75  Aligned_cols=347  Identities=20%  Similarity=0.263  Sum_probs=253.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007612           44 IIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLV  123 (596)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~  123 (596)
                      +.+.+..+......+...+.++.|. +++|.++.+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            3456667777777777878887776 46799999999999999999999999999999997 999999999999999988


Q ss_pred             HHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHH
Q 007612          124 LLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYL  203 (596)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  203 (596)
                      ++.+.                       ++...++++|++.|++.+...+...+++.|.+|+++      |++.+++.+.
T Consensus        80 ~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  130 (352)
T cd06174          80 LLAFA-----------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSA  130 (352)
T ss_pred             HHHHh-----------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHH
Confidence            88776                       237889999999999999999999999999999988      9999999999


Q ss_pred             HHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcc
Q 007612          204 ALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGE  283 (596)
Q Consensus       204 ~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  283 (596)
                      ..++|..++|.+++.+.+..+|++.|++..+..++..+......+                                   
T Consensus       131 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  175 (352)
T cd06174         131 GFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR-----------------------------------  175 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence            999999999999999998889999999887666555544332210                                   


Q ss_pred             cchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhh
Q 007612          284 DLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVF  363 (596)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (596)
                                                                                  +.....+..+..........
T Consensus       176 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~  195 (352)
T cd06174         176 ------------------------------------------------------------LLLLLALAFFLLSFGYYGLL  195 (352)
T ss_pred             ------------------------------------------------------------HHHHHHHHHHHHHhHHHHHH
Confidence                                                                        00000000111111111111


Q ss_pred             ccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHH-HHHHHHHHHHHHH
Q 007612          364 TQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQ-RMGIGLVIAIVAM  442 (596)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~-~i~ig~~l~~v~~  442 (596)
                      ...+. +..+..+.+      ....+.+.....++..+..++.+++.    +|.+        +++ .+.++..+..++.
T Consensus       196 ~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~--------~~~~~~~~~~~~~~i~~  256 (352)
T cd06174         196 TYLPL-YLQEVLGLS------AAEAGLLLSLFGLGGILGALLGGLLS----DRLG--------RRRLLLLIGLLLAALGL  256 (352)
T ss_pred             HHHHH-HHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--------hhhHHHHHHHHHHHHHH
Confidence            11111 111000111      11123334444555566666666544    3433        223 5777877777777


Q ss_pred             HHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Q 007612          443 LAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYV  522 (596)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l  522 (596)
                      +.....                    .+.+...+..++.+++.+...+...++..|..|++.|++.+|+.++...+|..+
T Consensus       257 ~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  316 (352)
T cd06174         257 LLLALA--------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGAL  316 (352)
T ss_pred             HHHHHh--------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            766653                    135667778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 007612          523 SSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYI  571 (596)
Q Consensus       523 g~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~  571 (596)
                      ++.+.+.+.+                ..+++..|++.+++.+++.+..+
T Consensus       317 ~~~i~g~l~~----------------~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         317 GPLLAGLLLD----------------TGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHhc----------------ccCcchHHHHHHHHHHHHHHHhe
Confidence            9999997764                12345577877888777766554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=4.5e-22  Score=219.21  Aligned_cols=405  Identities=14%  Similarity=0.105  Sum_probs=246.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHH
Q 007612           78 EAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLF  157 (596)
Q Consensus        78 ~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  157 (596)
                      +.+++.+...++..+++++.|+++|++ |||++++++.+++.++.++++++                       .+...+
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a-----------------------~~~~~l  145 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA-----------------------PSWYQL  145 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh-----------------------hhHHHH
Confidence            458999999999999999999999997 99999999999999999999998                       348899


Q ss_pred             HHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc--ccchHHHHHHHHH
Q 007612          158 YLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE--GMWALGFWVSTGS  235 (596)
Q Consensus       158 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~--~~~~~~f~~~~~~  235 (596)
                      +++|++.|+|.|+.....+.+++|..|++.      |+...+.++...++|..++. +.++..++  .+||..+.+..+.
T Consensus       146 ~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~-~~~~~~~~~~~~Wr~~~~~~~i~  218 (513)
T KOG0254|consen  146 IVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGY-CINYGTSKVYAGWRIPLGLALIP  218 (513)
T ss_pred             HHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHH-HHhhhhccCCccHHHHHHHHHHH
Confidence            999999999999999999999999999999      99999999999999999995 45555443  4899888877766


Q ss_pred             HHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCcccccc--c-cchhhh
Q 007612          236 AFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTH--G-FKFLDR  312 (596)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~~  312 (596)
                      .++..+.+++                                +||+|+|+.+.++.+++.+.+.++....  + ....+.
T Consensus       219 ~~~~~~~~~~--------------------------------~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~  266 (513)
T KOG0254|consen  219 AVILALGMLF--------------------------------LPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELEL  266 (513)
T ss_pred             HHHHHHHHHh--------------------------------CCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHH
Confidence            5555554333                                6677777777666666655555544411  1 000100


Q ss_pred             hhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccceeEeeeccccccccccccCCcccc
Q 007612          313 AAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMS  392 (596)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (596)
                      -......+  ......+..|+.+..  ...+|+....+.+..++..     ..+...........+..  +.........
T Consensus       267 ~~~~~~~~--~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~-----tG~~~~~~Y~~~if~~~--g~~~~~~~~~  335 (513)
T KOG0254|consen  267 LKIKLLVE--AEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQL-----TGINYVFYYSTTIFKSA--GLKSDTFLAS  335 (513)
T ss_pred             HHHHHHHh--hhcccccccHHHhcC--cchHHHHHHHHHHHHHHHH-----hCCceEEeehHHHHHhc--CCCCchHHHH
Confidence            00000000  000011111221111  0122222222222222221     11111111100111111  1111111112


Q ss_pred             ccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehh
Q 007612          393 SFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIF  472 (596)
Q Consensus       393 ~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (596)
                      .+..+..++...+...+++|+    +        ++..++.|...+.+++++++.......+...       ......+.
T Consensus       336 ~~~~~v~~~~t~~~~~lvd~~----g--------Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  396 (513)
T KOG0254|consen  336 IILGVVNFLGTLVATYLVDRF----G--------RRKLLLFGAAGMSICLVILAVVGVFALYYPN-------SSKGAGWL  396 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh----c--------cHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-------cccchhHH
Confidence            222222333333333444444    3        3345888888888888877764322100000       00011222


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchh
Q 007612          473 WQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHL  552 (596)
Q Consensus       473 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  552 (596)
                      .+...++..........+..+.+..|.+|.+.|+.+.++....+++.+++-............                .
T Consensus       397 ~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~----------------~  460 (513)
T KOG0254|consen  397 AIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG----------------I  460 (513)
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------c
Confidence            233333444444444557777899999999999999999999999888776555554433110                1


Q ss_pred             hHHHHHHHHHHHHHHH-HHHhhcccccccchhhhhhhccc
Q 007612          553 DRFYFLLAGLTTVDFV-VYIACAKWYKCIELEAKCAESNQ  591 (596)
Q Consensus       553 ~~~f~~~a~i~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~  591 (596)
                      ...|+.+++++.+..+ +.+++.+|+|+++.|+.++....
T Consensus       461 ~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  461 GGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             cchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence            2356777777777777 78889999999999987654443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.90  E-value=9.8e-22  Score=215.66  Aligned_cols=167  Identities=14%  Similarity=0.190  Sum_probs=144.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      .+++.+..+.+..+...+..+.+...+ +++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            445666667777777666666555444 466789999999999999999999999999999999997 999999999999


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      .+++.+++.++                       .+.+.++++|++.|++.++..+...+++.|.+|+++      |+++
T Consensus        95 ~~~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~  145 (496)
T PRK03893         95 FSVGTLACGFA-----------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKA  145 (496)
T ss_pred             HHHHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            99988888876                       237789999999999999999999999999999998      9999


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHH
Q 007612          198 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGS  235 (596)
Q Consensus       198 ~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~  235 (596)
                      +++.+.+.++|..++|.+.+++.+..+|++.|++..+.
T Consensus       146 ~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999875443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.90  E-value=2.7e-21  Score=205.05  Aligned_cols=156  Identities=13%  Similarity=0.107  Sum_probs=137.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      .|.++.+++..++.......+.+.+|.|+. ++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            356788888888888888888888888875 6899999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ++...++++                       ++.+.++++|++.|++.+...|...+.+.+..++++      |++.++
T Consensus        83 ~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  133 (381)
T PRK03633         83 AGCAGLGLM-----------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLA  133 (381)
T ss_pred             HHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence            888887776                       237889999999999999988888888888888887      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccch
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWA  226 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~  226 (596)
                      +++.+.++|..+||.+++.+.+...+.
T Consensus       134 ~~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        134 AYMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccch
Confidence            999999999999999999887754333

>TIGR00897 2A0118 polyol permease family

Probab=99.90  E-value=9.6e-21  Score=202.33  Aligned_cols=170  Identities=12%  Similarity=0.066  Sum_probs=140.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      ..+|.+....+..+......+...++++.++ +++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+..+
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~   87 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL   87 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence            4567778888888888888887888888888 56899999999999999999999999999999997 999999999988


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      ..++.+++.+... .                  ..+...+++.|++.|+|.+...+...+.+.+.+|+++      |+++
T Consensus        88 ~~~~~~~~~~~~~-~------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~  142 (402)
T TIGR00897        88 WCVGHAAFIVFGL-G------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSA  142 (402)
T ss_pred             HHHHHHHHHHHhc-c------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHH
Confidence            8887665432100 0                  0236677889999999988877778888899999988      9999


Q ss_pred             HHHHHHHHhHHH-HHHhhhhhhhcccccchHHHHHHHH
Q 007612          198 FSYFYLALNLGS-LFSNTILGYFEDEGMWALGFWVSTG  234 (596)
Q Consensus       198 ~~~~~~~~~lg~-~~~~~i~g~l~~~~~~~~~f~~~~~  234 (596)
                      .|+.+.+.++|. .++|.+++++.+..||+..++....
T Consensus       143 ~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~  180 (402)
T TIGR00897       143 VGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA  180 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            999999999996 6899999998888887666655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=4.3e-21  Score=202.91  Aligned_cols=176  Identities=16%  Similarity=0.074  Sum_probs=148.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF  118 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~  118 (596)
                      +++.++.+.+..+..........+.+| ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            345555566666666666665656555 45678999999999999999999999999999999997 9999999999988


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .++.+++.++                       ++.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+
T Consensus        81 ~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  131 (385)
T TIGR00710        81 ALSSLGLALS-----------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIY  131 (385)
T ss_pred             HHHHHHHHHH-----------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHH
Confidence            8888888776                       237778999999999999999999999999999888      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      ++.+...++|..++|.+++++.+..+|++.|++.++..++..+..+.
T Consensus       132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988899999998877665555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.90  E-value=6.7e-21  Score=202.92  Aligned_cols=175  Identities=13%  Similarity=0.089  Sum_probs=125.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH-HHHHHhhhHHHHhhhccCchHHHH-HHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTG-TVYIFSLVGAFLSDSYWGRFKTCA-IFQGI  117 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~Gr~~~l~-~~~~~  117 (596)
                      ....+..++..++.+.....+.+.++.|+++++|.|+.+.+++.+...+ +..++.+++|+ +||+ ||||.++ .+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~   91 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL   91 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence            3455677777888888888889999999999999999999999877655 44455555555 9997 9988754 44555


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccch--h
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSK--V  195 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r--~  195 (596)
                      .+++..+..++                       .+.+.+++.+.+.+...+...|....+..++.+++.      |  +
T Consensus        92 ~~~~~~~~~~~-----------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  142 (393)
T PRK15011         92 GVLACTLFAWN-----------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAV  142 (393)
T ss_pred             HHHHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHH
Confidence            45555555555                       225555444444333334566777788787766554      4  3


Q ss_pred             hHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          196 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       196 ~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      ...++.+.+.++|.++||.+++++.++.|||..|++.++..++..+..+.
T Consensus       143 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        143 MFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            44578888999999999999999998899999998877655554444333

>TIGR00895 2A0115 benzoate transport

Probab=99.90  E-value=2.1e-21  Score=205.64  Aligned_cols=174  Identities=16%  Similarity=0.187  Sum_probs=142.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      ++.+...++..+......+.... ..+++.+++|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~   93 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGF-AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFS   93 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHH
Confidence            44445555555555555544444 44566678999999999999999999999999999999997 99999999998888


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ++.+++.+.   +                    +...+++.+++.|++.+...+...+++.|.+|+++      |+++++
T Consensus        94 ~~~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~  144 (398)
T TIGR00895        94 VFTLLCALA---T--------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVG  144 (398)
T ss_pred             HHHHHHHHc---c--------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHh
Confidence            888777766   2                    36778899999999999999999999999999988      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHH
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      +.+...++|..++|.+++++.+..+|++.|++.++..++..++.+
T Consensus       145 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  189 (398)
T TIGR00895       145 LMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM  189 (398)
T ss_pred             hHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence            999999999999999999999989999999887544444433333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.89  E-value=6.5e-21  Score=202.96  Aligned_cols=163  Identities=15%  Similarity=0.095  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      .++.+++.+++..+........++.. .+++|.++.+.+++.+.+.+...++.+++|+++||+ ||||+++++.++..++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~   81 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG   81 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence            45566666777666544444444443 578899999999999999999999999999999997 9999999999998888


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      .+++.+.   +                    +   .++.|+++|++.+...|+..+++.|++|+++      |+++.++.
T Consensus        82 ~~~~~~~---~--------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~  129 (393)
T PRK11195         82 CLLMLFG---I--------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWM  129 (393)
T ss_pred             HHHHHHH---H--------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence            7776655   1                    1   2678999999999999999999999999998      99999999


Q ss_pred             HHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHH
Q 007612          202 YLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAA  239 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~  239 (596)
                      +...++|.++||.++|++.+. .|+..+.+.....+++
T Consensus       130 ~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        130 EGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999875 4776666555444333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.89  E-value=2.2e-20  Score=200.14  Aligned_cols=147  Identities=12%  Similarity=0.070  Sum_probs=129.7

Q ss_pred             HHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCC
Q 007612           68 LTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCG  147 (596)
Q Consensus        68 l~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (596)
                      +.+++|.+..+.++..+++.++..+++++.|+++||+ |||++++.+..+..++.+++.++                   
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a-------------------  101 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT-------------------  101 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------------------
Confidence            5678999999999999999999999999999999997 99999999999999998888877                   


Q ss_pred             CCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchH
Q 007612          148 THSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWAL  227 (596)
Q Consensus       148 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~  227 (596)
                          ++...++++|+++|++.+...+...+++.|.+|+++      |++.+++.+...++|..+||.+++.+.++.+|++
T Consensus       102 ----~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~  171 (413)
T PRK15403        102 ----TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKV  171 (413)
T ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence                237889999999999988766777788899999888      8999999999999999999999999988889999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007612          228 GFWVSTGSAFAALVLFL  244 (596)
Q Consensus       228 ~f~~~~~~~~~~~~~~~  244 (596)
                      .|++.++..++..+..+
T Consensus       172 ~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        172 LFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988776555554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=3e-21  Score=207.43  Aligned_cols=394  Identities=13%  Similarity=0.054  Sum_probs=223.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.+|...+..++...+++.+.++++.|+++++|++..+.+.+.+.+.++..+++++.|+++||+ ||||+++++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4667777777888888888899999999999999999999999999999999999999999997 999999887665554


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +...+......+..                   ......+..+.++..+...+.....+.++.++..+    .++..++.
T Consensus        89 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~g~  145 (420)
T PRK09528         89 LFGPFFIYVFAPLL-------------------QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSR----RSGFEYGR  145 (420)
T ss_pred             HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHh----hccccchh
Confidence            43322211000000                   00011122222333333223322333333321110    15667788


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCC
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSA  280 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  280 (596)
                      .+...++|..++|.++|++.+ .+|+++|++.++..++.++..+...++.++++...++                   + 
T Consensus       146 ~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-  204 (420)
T PRK09528        146 ARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA-------------------L-  204 (420)
T ss_pred             hHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc-------------------h-
Confidence            888889999999999998876 5899999887766555554444333221110000000                   0 


Q ss_pred             CcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhh-hHHHHHHhHhH
Q 007612          281 EGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILR-LLPIWLCTILY  359 (596)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (596)
                                    .+ .+     +.....+..                        ...++ +..+. .+........+
T Consensus       205 --------------~~-~~-----~~~~~~~~~------------------------~~l~~-~~~~~l~l~~~~~~~~~  239 (420)
T PRK09528        205 --------------GA-NA-----SAVSLKDAL------------------------ALLKL-PKFWFLVLYVIGVACFY  239 (420)
T ss_pred             --------------hc-cc-----ccccHHHHH------------------------HHccC-CCeEeehHHHHHHHHHH
Confidence                          00 00     000000000                        00001 11111 11111111222


Q ss_pred             hhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHH
Q 007612          360 SVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAI  439 (596)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~  439 (596)
                      .....+.+.++.....  +....  ....+.+..+..+...+..++.+++    .+|.+        +++.+..+.++.+
T Consensus       240 ~~~~~~~~~~~~~~~~--~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g--------~~~~~~~~~~l~~  303 (420)
T PRK09528        240 DVFDQQFPNFFASFFA--TPEQG--TRVFGYLNSFQVFLEALIMFFAPFI----INRIG--------AKNALLLAGTIMA  303 (420)
T ss_pred             HHHHHHHHHHHHHHHh--ccCcc--hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhC--------cchhhHHHHHHHH
Confidence            2222222222111100  00000  0011222333334444555555544    44444        2233666677777


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHH-HHHHHHH
Q 007612          440 VAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSAL-CMTSISL  518 (596)
Q Consensus       440 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~l  518 (596)
                      +++...++.                    .+.++++...++.+++.+...+...+++.+.+|++.+++..++ +++...+
T Consensus       304 ~~~~l~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l  363 (420)
T PRK09528        304 VRIIGSGFA--------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQL  363 (420)
T ss_pred             HHHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHH
Confidence            776666542                    2445566667778888877777888899999999999988766 6778889


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccc
Q 007612          519 GNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKW  576 (596)
Q Consensus       519 g~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~  576 (596)
                      |+.+++.+.+.+.+..                +++..|+..+++.++..++.++..++
T Consensus       364 g~~ig~~~~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        364 GAVFLSTLAGNLYDSI----------------GFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHHHHHhh----------------CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999887622                35668888888877776666555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.89  E-value=1.2e-21  Score=211.64  Aligned_cols=180  Identities=10%  Similarity=0.025  Sum_probs=136.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.++..++............... .+++++ .|+++.+.+++.+.+.++..++.++.|+++||+ |||+.++++.++..+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALA-MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhh-hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHH
Confidence            33444444444443333333333 446665 599999999999999999999999999999997 999999999888888


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +.+++.+.   ++.                ..+...+++.|++.|++.|...+.....+.|++|+++      |++++++
T Consensus       104 ~~~~~~~~---~~~----------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~  158 (438)
T TIGR00712       104 VMLLMGFV---PWA----------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSI  158 (438)
T ss_pred             HHHHHhcc---ccc----------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHH
Confidence            87776654   110                1235667788999999999988989999999999999      9999999


Q ss_pred             HHHHHhHHHHHHhhhhhhhc-ccccchHHHHHHHHHHHHHHHHHHhcCc
Q 007612          201 FYLALNLGSLFSNTILGYFE-DEGMWALGFWVSTGSAFAALVLFLAGTT  248 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~  248 (596)
                      ++...++|+.++|.+.+... +..+|++.|++.++..++..+..++..+
T Consensus       159 ~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       159 WNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999988777544 4578999999877665554444333333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.89  E-value=1.5e-20  Score=200.22  Aligned_cols=172  Identities=15%  Similarity=0.102  Sum_probs=143.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      +.+|.+++.....++.........+.+|. +.+++|.|+.+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            34566666666666666666655555554 4578999999999999999999999999999999997 999999999988


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      ..++.+++.++   +                    +...+++.|++.|++.+...+....+..|.+++++      |+++
T Consensus        83 ~~~~~~~~~~~---~--------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  133 (394)
T PRK11652         83 FILGTLVALFA---H--------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHA  133 (394)
T ss_pred             HHHHHHHHHHH---c--------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHH
Confidence            88888877766   2                    37788999999999988888888888889888877      8899


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHH
Q 007612          198 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAAL  240 (596)
Q Consensus       198 ~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~  240 (596)
                      .++.+.+..+|..++|.+++++.+..+|++.|++.++..++..
T Consensus       134 ~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~  176 (394)
T PRK11652        134 NSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT  176 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888899999998765544433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.88  E-value=3.9e-21  Score=206.17  Aligned_cols=377  Identities=12%  Similarity=0.150  Sum_probs=250.0

Q ss_pred             hhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCC
Q 007612           71 VLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHS  150 (596)
Q Consensus        71 ~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (596)
                      ++.++..+.+++.+.+..+..++++++|+++||+ |-|+++..+.++.+++.++..++..                    
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~--------------------  125 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS--------------------  125 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            5778899999999999999999999999999997 9999999999999999999998844                    


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc-ccchHHH
Q 007612          151 SLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE-GMWALGF  229 (596)
Q Consensus       151 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~-~~~~~~f  229 (596)
                       .+...+++.|+++|++.|...|+...+.+++.|+++      |++..++...+..+|.+++-+++|++.+. .||+++|
T Consensus       126 -~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sif  198 (466)
T KOG2532|consen  126 -IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIF  198 (466)
T ss_pred             -hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHH
Confidence             224578999999999999999999999999999999      99999999999999999999999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccccccch
Q 007612          230 WVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKF  309 (596)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  309 (596)
                      ++.++..++..++.+......+.+++.-+..                                                 
T Consensus       199 Y~~g~~g~i~~~~w~~~~~d~P~~h~~is~~-------------------------------------------------  229 (466)
T KOG2532|consen  199 YVFGIVGLIWFILWFLFYSDSPSKHPNISEK-------------------------------------------------  229 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccCCCCCHH-------------------------------------------------
Confidence            9988776666655554433322222211110                                                 


Q ss_pred             hhhhhhhccccccccccCCCCCCcccCccchhhhhhhh-hhHHHHHHhHhHhhhhccccceeEeeeccccccccccccCC
Q 007612          310 LDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCIL-RLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPP  388 (596)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (596)
                       |+..+...+..++.++..+.||+..     -..+.++ ..+..++....+.....+.|++ ..+..+++..      ..
T Consensus       230 -El~~I~~~k~~~~~~~~~~vP~~~i-----~ts~~vwai~~~~f~~~~~~~~l~~y~PtY-~~~VL~f~v~------~~  296 (466)
T KOG2532|consen  230 -ELKYIEKGKSEAHVKKKPPVPYKAI-----LTSPPVWAIWISAFGGNWGFYLLLTYLPTY-LKEVLGFDVR------ET  296 (466)
T ss_pred             -HHHHHHhcccccccCCCCCCCHHHH-----HcCHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHhCCChh------hh
Confidence             1111111111001111145677521     1112222 2222233344444444444443 3333344433      35


Q ss_pred             ccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHH--HHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCC
Q 007612          389 ASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRM--GIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGA  466 (596)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i--~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (596)
                      +..+++..+...+...+.+.+.|++..| .    -+.+..+++  .++....++.++.+++...+               
T Consensus       297 G~~salP~l~~~~~k~~~g~lsD~l~~~-~----ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~---------------  356 (466)
T KOG2532|consen  297 GFLSALPFLAMAIVKFVAGQLSDRLTFR-I----LSETTVRKIFNTIAFGGPAVFLLVLAFTSDE---------------  356 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhc-c----CchHhHHHHHHhHHHHHHHHHHHeeeecCCC---------------
Confidence            6666666777777777777777776555 2    122233343  56666667777666664311               


Q ss_pred             ceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 007612          467 SSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGN  546 (596)
Q Consensus       467 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~  546 (596)
                         +.+ ..+.+...+.+.................++..+..+|+.++...+.++++|.+.+.+...            +
T Consensus       357 ---~~~-~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~------------~  420 (466)
T KOG2532|consen  357 ---HRL-LAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTD------------N  420 (466)
T ss_pred             ---cch-HHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCC------------C
Confidence               222 222222222222222322222222331347799999999999999999999999866430            1


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHhhc
Q 007612          547 LNKGHLDRFYFLLAGLTTVDFVVYIACA  574 (596)
Q Consensus       547 ~~~~~~~~~f~~~a~i~~i~~~~~~~~~  574 (596)
                       +...++.+|++.+++.+++.+++.++.
T Consensus       421 -t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  421 -TREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             -CHHHHHHHHHHHHHHHHHhchheeEee
Confidence             245568899999999999998887765

>PRK15075 citrate-proton symporter; Provisional

Probab=99.88  E-value=1.8e-20  Score=202.21  Aligned_cols=171  Identities=15%  Similarity=0.099  Sum_probs=124.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH-HHHH-----HHHHHHhhhHHHHhhhccCchHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNV-SKWT-----GTVYIFSLVGAFLSDSYWGRFKTCAIF  114 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~-~~~~-----~~~~i~~~~~G~laDr~~Gr~~~l~~~  114 (596)
                      +.....++..+.+.+....+... .+.+.++++.++.+.+... +...     +...+++++.|+++||+ ||||.++.+
T Consensus        15 ~~~~~~~~~~~~~~~d~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~   92 (434)
T PRK15075         15 RAILRVTSGNFLEMFDFFLFGFY-ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVT   92 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHH
Confidence            34555556666666665555444 4467788898777654433 2222     22246788999999997 999999999


Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccch
Q 007612          115 QGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSK  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  194 (596)
                      .+++.++.++++++.+...+.               ......++++|+++|++.|...+....+++|++|+++      |
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~---------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------r  151 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIG---------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------K  151 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHH---------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------c
Confidence            999999999998872211000               0001246899999999999999999999999999999      9


Q ss_pred             hhHHHHHHHHHhHHHHHHhhhhhhh--------cccccchHHHHHHHH
Q 007612          195 VAFFSYFYLALNLGSLFSNTILGYF--------EDEGMWALGFWVSTG  234 (596)
Q Consensus       195 ~~~~~~~~~~~~lg~~~~~~i~g~l--------~~~~~~~~~f~~~~~  234 (596)
                      ++..++.....++|..+++.+++.+        .+..|||++|++..+
T Consensus       152 g~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        152 GFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            9999998888888887777766654        246799999987543

>PRK11043 putative transporter; Provisional

Probab=99.88  E-value=4.1e-20  Score=197.24  Aligned_cols=167  Identities=16%  Similarity=0.179  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007612           49 NQGLATLAFFGVGVNLVLF--LTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLS  126 (596)
Q Consensus        49 ~~~~~~~~~~~~~~~l~~y--l~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~  126 (596)
                      ..+..+..+++...++|.+  +.+++|.++.+.++..+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.
T Consensus        11 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~   89 (401)
T PRK11043         11 LAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGML   89 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHH
Confidence            3333444444444555543  6789999999999999999999999999999999997 999999999988888888777


Q ss_pred             hhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHh
Q 007612          127 LSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALN  206 (596)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  206 (596)
                      ++   +                    +.+.+++.|+++|++.+...+...+++.|.+|+++      +.+.++..+...+
T Consensus        90 ~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  140 (401)
T PRK11043         90 WV---E--------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVA  140 (401)
T ss_pred             Hh---c--------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH
Confidence            76   2                    37778899999999988877888889999999887      8888888888889


Q ss_pred             HHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          207 LGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       207 lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      +|..++|.+++++.+..+|++.|++..+..++..++.+.
T Consensus       141 ~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        141 LSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999899999998877665555444433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.88  E-value=8.5e-20  Score=193.66  Aligned_cols=363  Identities=10%  Similarity=-0.010  Sum_probs=225.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH-HHHHHH
Q 007612           45 IILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI-FVIGLV  123 (596)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~-~~~~~~  123 (596)
                      .+.+..+....++....+++|.|++ ++|+|..+.+++.+.+.+...+++++.|.++||+ ||++.......+ ..+..+
T Consensus         8 ~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~   85 (382)
T TIGR00902         8 WLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAA   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHH
Confidence            3445555555666667788999985 6899999999999999999999999999999997 885443222111 111111


Q ss_pred             -HHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHH
Q 007612          124 -LLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFY  202 (596)
Q Consensus       124 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  202 (596)
                       ....+                       ++.+.+++.|.+++.+.+...|...++..+.  +++      |++.++...
T Consensus        86 ~~~~~~-----------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~  134 (382)
T TIGR00902        86 AFSAGA-----------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVR  134 (382)
T ss_pred             HHHHhh-----------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHH
Confidence             12222                       3477888899999988888888888886553  344      778899999


Q ss_pred             HHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCc
Q 007612          203 LALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEG  282 (596)
Q Consensus       203 ~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  282 (596)
                      ...++|.+++|.+++++.+.+||+..|++..+..++.++ .+...++.+   ++++.                     + 
T Consensus       135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~---~~~~~---------------------~-  188 (382)
T TIGR00902       135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIP---PKDAI---------------------P-  188 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCC---CCccc---------------------c-
Confidence            999999999999999999999999998876544332222 222222110   00000                     0 


Q ss_pred             ccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhH-HHHHHhHhHhh
Q 007612          283 EDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLL-PIWLCTILYSV  361 (596)
Q Consensus       283 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  361 (596)
                            ++.            ....                      ..+     .++.+.|+.+... ..++....+..
T Consensus       189 ------~~~------------~~~~----------------------~~~-----~~~l~~~~~~~~l~~~~l~~~~~~~  223 (382)
T TIGR00902       189 ------EDE------------SQGD----------------------SAF-----IALLKNPMNLRFLAAVCLIQGAHAA  223 (382)
T ss_pred             ------ccc------------cccc----------------------hhH-----HHHHcChHHHHHHHHHHHHHHHHHH
Confidence                  000            0000                      000     0011112222222 12222223333


Q ss_pred             hhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHH
Q 007612          362 VFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVA  441 (596)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~  441 (596)
                      .+...+. +.+. .+.+..      ..+....+..+..++...+    ..++.+|.+        .++.+.++.++..+.
T Consensus       224 ~~~~~~~-~l~~-~g~s~~------~~g~l~~~~~~~~i~~~~~----~~~l~~r~g--------~~~~l~~~~~~~~~~  283 (382)
T TIGR00902       224 YYGFSAI-YWQA-AGISAS------ATGLLWGIGVLAEIIIFAF----SNKLFQNCS--------ARDLLLISAIACVGR  283 (382)
T ss_pred             HHHHHHH-HHHH-CCCCHh------HHHHHHHHHHHHHHHHHHH----hHHHHhhCC--------HHHHHHHHHHHHHHH
Confidence            3322221 2211 111111      1111222222223333333    334455554        667788999999988


Q ss_pred             HHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHH-HHHHHH
Q 007612          442 MLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMT-SISLGN  520 (596)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~-~~~lg~  520 (596)
                      +..++..                    .+.+.++....+.++..+...+....++.+. |++.+++++|++++ ...+|.
T Consensus       284 ~~~~~~~--------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~  342 (382)
T TIGR00902       284 WAIIGAI--------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLI  342 (382)
T ss_pred             HHHHHhH--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHH
Confidence            8877653                    2556667778999999999999999999988 99999999999874 577999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 007612          521 YVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVV  569 (596)
Q Consensus       521 ~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~  569 (596)
                      .+++.+.|.+.+..                +. ..|+..+++++++.++
T Consensus       343 ~~g~~~~G~l~~~~----------------g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       343 AIFTAFAGFIYPTL----------------GA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHhc----------------cH-HHHHHHHHHHHHHHHH
Confidence            99999999887622                22 4577777777766444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.88  E-value=8.5e-20  Score=194.75  Aligned_cols=179  Identities=11%  Similarity=-0.005  Sum_probs=130.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTR-VLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      |.+++..+........-+ ..+.+...+.+ ++|+|..|.+++.+++.++..++.++.|++.||+ |.|+++.++.++.+
T Consensus        34 r~l~~s~~~f~~~F~~w~-~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWM-LFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            555554444333333333 33334445544 7999999999999999999999999999999997 99999999999988


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      +..++++++...+                  ..++..+++.|++.|++ |...+.....+++++|+++      |+++++
T Consensus       112 i~~~~~~~a~~~~------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~G  166 (462)
T PRK15034        112 IPCVWLGIAVQNP------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALG  166 (462)
T ss_pred             HHHHHHHHHHccc------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHH
Confidence            8888887651101                  12488899999999998 7788999999999999999      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhc-----c-------------cccchHHHHHHHHHHHHHHHHHHhc
Q 007612          200 YFYLALNLGSLFSNTILGYFE-----D-------------EGMWALGFWVSTGSAFAALVLFLAG  246 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~-----~-------------~~~~~~~f~~~~~~~~~~~~~~~~~  246 (596)
                      +.....|+|..+++.++..+.     .             ..+|+.++++..+..++..++.++.
T Consensus       167 i~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        167 INGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            987667777766655444322     1             2346777766665555555444443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.87  E-value=7.6e-21  Score=199.80  Aligned_cols=152  Identities=13%  Similarity=0.067  Sum_probs=132.2

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCC
Q 007612           64 LVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNEL  143 (596)
Q Consensus        64 l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (596)
                      ..+++.+++|++..+.+++.+...++..++.++.|+++||+ |||++++++.++..++.+++.++               
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---------------   80 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS---------------   80 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh---------------
Confidence            34577889999999999999999999999999999999997 99999999999999998888877               


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHh-hhhhhhccc
Q 007612          144 TPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSN-TILGYFEDE  222 (596)
Q Consensus       144 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~-~i~g~l~~~  222 (596)
                              .+.+.+++.|++.|++.+...+...+++.|++|+++      |++++++.+.+.++|..++| .+++.+.+.
T Consensus        81 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  146 (379)
T TIGR00881        81 --------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAEL  146 (379)
T ss_pred             --------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhc
Confidence                    237889999999999999999999999999999988      99999999999999999999 566777777


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHh
Q 007612          223 GMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       223 ~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      .+|++.|++.+++.++..+..+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881       147 YSWHWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             CCchhHHHHHHHHHHHHHHHHhe
Confidence            89999998877655544443333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=1e-19  Score=193.65  Aligned_cols=167  Identities=16%  Similarity=0.120  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007612           47 LLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLS  126 (596)
Q Consensus        47 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~  126 (596)
                      ....+....++....+.+|. +.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.++++.++..++.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~   86 (392)
T PRK10473          9 FALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCS   86 (392)
T ss_pred             HHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHH
Confidence            33344444444444455554 5678999999999999999999999999999999997 999999999988888888877


Q ss_pred             hhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHh
Q 007612          127 LSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALN  206 (596)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  206 (596)
                      .+   +                    +...++++|+++|++.+...+...+++.|.+|+++      |+++.++.+...+
T Consensus        87 ~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~  137 (392)
T PRK10473         87 LA---E--------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITC  137 (392)
T ss_pred             Hh---C--------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHH
Confidence            66   2                    26778889999999999988999999999999998      9999999999999


Q ss_pred             HHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHH
Q 007612          207 LGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       207 lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      +|..++|.+++.+.+..+|++.|++.++..++..++.+
T Consensus       138 i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473        138 IIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             HHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888999999887766555544433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.87  E-value=9e-20  Score=196.67  Aligned_cols=353  Identities=14%  Similarity=0.100  Sum_probs=217.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhc---cCchH-HHHHHHHHHHHHHHHHH
Q 007612           51 GLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSY---WGRFK-TCAIFQGIFVIGLVLLS  126 (596)
Q Consensus        51 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Gr~~-~l~~~~~~~~~~~~~~~  126 (596)
                      +..+.....+..+++.|+++++|+++.+++++.++..+...+..|+.|+++||.   +|||| .++++....+++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            445556666778899999999999999999999999999999999999999983   27755 56777777777777776


Q ss_pred             hhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCC-ccccccccchhhHHHHHHHHH
Q 007612          127 LSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYD-EEDAKEGHSKVAFFSYFYLAL  205 (596)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~  205 (596)
                      ..   |+.              .+......+++.+++.+++.+.......++..|..+ +++      |++..++.+...
T Consensus        89 ~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~~  145 (437)
T TIGR00792        89 TT---PDF--------------SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFGA  145 (437)
T ss_pred             hC---CCC--------------CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHHH
Confidence            55   220              011234566677778888888888888889899875 455      889999988888


Q ss_pred             hHHHHHHhhhhhhhc-------ccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhcccc
Q 007612          206 NLGSLFSNTILGYFE-------DEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHL  278 (596)
Q Consensus       206 ~lg~~~~~~i~g~l~-------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (596)
                      ++|+.+++.+.+.+.       +..+|++.+++.+++.++..++.+...++.+++++..++                   
T Consensus       146 ~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~-------------------  206 (437)
T TIGR00792       146 TLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE-------------------  206 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc-------------------
Confidence            888877766555443       245899988877766555544433333321100000000                   


Q ss_pred             CCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHH-HHHHhH
Q 007612          279 SAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLP-IWLCTI  357 (596)
Q Consensus       279 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  357 (596)
                                                +..+..+.                   +     +.+.+.|.++.... .++...
T Consensus       207 --------------------------~~~~~~~~-------------------~-----~~l~~~~~~~~~~~~~~~~~~  236 (437)
T TIGR00792       207 --------------------------KKLSLKQI-------------------F-----KALFKNDQLLILCLAYLFYNL  236 (437)
T ss_pred             --------------------------cCCCHHHH-------------------H-----HHHhCCHHHHHHHHHHHHHHH
Confidence                                      00000000                   0     00011122222211 111122


Q ss_pred             hHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHH
Q 007612          358 LYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVI  437 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l  437 (596)
                      .+.. ......++.....+ +..      ....+..+..+..++..++.+++    .+|.+        +++.+.++.++
T Consensus       237 ~~~~-~~~~~~~~~~~~~~-~~~------~~~~~~~~~~i~~ii~~~~~~~l----~~r~g--------~~~~~~~~~~~  296 (437)
T TIGR00792       237 AFNI-KNGVQVYYFTYVLG-DPE------LFSYMGSIAIVAGLIGVLLFPRL----VKKFG--------RKILFAGGILL  296 (437)
T ss_pred             HHHH-HcchhheeEeeecC-ChH------HHHHHHHHHHHHHHHHHHHHHHH----HHHhC--------cHHHHHHHHHH
Confidence            2221 12222333332211 100      01122223344455555555544    44444        33456777777


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCC-------chhHHHHHH
Q 007612          438 AIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAP-------DGLKSFGSA  510 (596)
Q Consensus       438 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g  510 (596)
                      .+++++...+..                   .+.+..++..++.+++.+...+..++++.|..+       ++.+|++.|
T Consensus       297 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  357 (437)
T TIGR00792       297 MVLGYLIFFFAG-------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS  357 (437)
T ss_pred             HHHHHHHHHHcc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence            777766554421                   133445556677888888888888889888765       567899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Q 007612          511 LCMTSISLGNYVSSLLLTMVMKIS  534 (596)
Q Consensus       511 l~~~~~~lg~~lg~~l~~~i~~~~  534 (596)
                      +.++...+|..+++.+.+.+.+..
T Consensus       358 ~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       358 VRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999887755

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.87  E-value=8.3e-20  Score=194.64  Aligned_cols=390  Identities=12%  Similarity=0.043  Sum_probs=231.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.+|......++...++..+.++++.|+++++|+++.+.+++.+...++..+++++.|+++||+ |||+.++.+....++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4578888888888888888999999999999999999999999999999999999999999997 999999887666555


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +..........+..               ........++++++.|++.+...+....+..|..+  +      ++..++.
T Consensus        81 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~  137 (396)
T TIGR00882        81 LFAPFFIYVFGPLL---------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGK  137 (396)
T ss_pred             HHHHHHHHHhhhHH---------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccch
Confidence            44332211000100               00113345666788888888888888777666422  2      3345667


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCC
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSA  280 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  280 (596)
                      .....++|..++|.++|.+.+ .+|++.|++.+++.++..++.+...++.+++    +...+               ..+
T Consensus       138 ~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---------------~~~  197 (396)
T TIGR00882       138 ARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS----ATVAN---------------ALG  197 (396)
T ss_pred             hhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh----hhhhc---------------ccc
Confidence            777889999999999998765 5999999988766555544443322221110    00000               000


Q ss_pred             CcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHH-HHHHhHhH
Q 007612          281 EGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLP-IWLCTILY  359 (596)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  359 (596)
                      +                .    . +..+..+..                         ++.+.|.++.... .+.....+
T Consensus       198 ~----------------~----~-~~~~~~~~~-------------------------~~l~~~~~~~~~l~~~~~~~~~  231 (396)
T TIGR00882       198 A----------------N----A-SAFSLKLAL-------------------------ELFRQRKFWMFVLYVVGVACVY  231 (396)
T ss_pred             c----------------c----c-CCCCHHHHH-------------------------HHHcCCcHHHHHHHHHHHHHHH
Confidence            0                0    0 000000000                         0001122211111 11112222


Q ss_pred             hhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHH
Q 007612          360 SVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAI  439 (596)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~  439 (596)
                      .....+.+.++..........    ....+.......+...+.....+    ++.||.+        +++.+.++.++.+
T Consensus       232 ~~~~~~~~~y~~~~~~~~~~~----~~~~g~~~~~~~i~~~~~~~~~g----~l~~r~g--------~~~~l~~~~~l~~  295 (396)
T TIGR00882       232 DVFDQQFANFFTSFFATPQQG----TRVFGYVTTMGELLNALIMFCAP----LIINRIG--------AKNALLIAGTIMS  295 (396)
T ss_pred             HHHHHHHHHHHHHhccccccc----hHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc--------cchhHHHHHHHHH
Confidence            222122222111100000000    00011122222233333334444    3444544        2334667777777


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHH-HHHHHHH
Q 007612          440 VAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSAL-CMTSISL  518 (596)
Q Consensus       440 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~l  518 (596)
                      +.+......                    .+.+++.+..++.+++.........++..+..|++.++++.+. +++...+
T Consensus       296 l~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~l  355 (396)
T TIGR00882       296 VRIIGSSFA--------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQL  355 (396)
T ss_pred             HHHHHHHhc--------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHH
Confidence            766554432                    2455566667788888777777777788888999999887776 6788999


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHh
Q 007612          519 GNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIA  572 (596)
Q Consensus       519 g~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~  572 (596)
                      |+.+++.+.|.+.+.                .+++..|.+.+++.++..++..+
T Consensus       356 g~~~~~~l~G~l~~~----------------~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       356 AMIFLSTLAGNMYDS----------------IGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHhHHHHHHh----------------cccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988762                24567888888887777666544

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=9.2e-20  Score=192.59  Aligned_cols=156  Identities=18%  Similarity=0.167  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 007612           59 GVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRG  138 (596)
Q Consensus        59 ~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (596)
                      .+.+.+|.+. +++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..++.++   +      
T Consensus         9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~---~------   77 (377)
T PRK11102          9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA---Q------   77 (377)
T ss_pred             HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH---c------
Confidence            3456666665 57999999999999999999999999999999997 99999999999999988888776   2      


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhh
Q 007612          139 CGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGY  218 (596)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~  218 (596)
                                    +.+.+++.|++.|++.+...+...+++.|++|+++      |++.+++.+...++|..++|.++++
T Consensus        78 --------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~  137 (377)
T PRK11102         78 --------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGW  137 (377)
T ss_pred             --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          37778899999999999999999999999999988      9999999999999999999999999


Q ss_pred             hcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          219 FEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       219 l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      +.+..+|++.|++.++..++..++...
T Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102        138 LLVWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            998889999998877665555444433

>PRK10133 L-fucose transporter; Provisional

Probab=99.87  E-value=1.7e-19  Score=194.75  Aligned_cols=153  Identities=12%  Similarity=0.044  Sum_probs=123.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF  118 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~  118 (596)
                      ....++.+.+..+...+........+| .+++++|.|+.+.++..+.+.++..+++++.|+++||+ ||||++.++.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            334556666666666666655555555 45899999999999999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      +++.+++......                    +++..++++|+++|+|.|...+..++++.|..|+++      |...+
T Consensus       102 ~~~~~l~~~~~~a--------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~  155 (438)
T PRK10133        102 ALGAALFWPAAEI--------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRL  155 (438)
T ss_pred             HHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHH
Confidence            9998776432111                    238889999999999999999999999998766655      66678


Q ss_pred             HHHHHHHhHHHHHHhhhhhhh
Q 007612          199 SYFYLALNLGSLFSNTILGYF  219 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l  219 (596)
                      ++.+....+|..+||.+++.+
T Consensus       156 s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        156 NLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888889999998887654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.87  E-value=1.9e-19  Score=196.46  Aligned_cols=379  Identities=15%  Similarity=0.128  Sum_probs=242.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007612           44 IIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLV  123 (596)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~  123 (596)
                      ..+.+.+...+++......-++-++. ++.-|+...+.+.....+-..+..+++|.++||+ .|||+++.+.++..+...
T Consensus        13 r~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~   90 (524)
T PF05977_consen   13 RRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVAL   90 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHH
Confidence            33444455555554444444443443 5567888999999999999999999999999997 999999999887776655


Q ss_pred             HHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHH
Q 007612          124 LLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYL  203 (596)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  203 (596)
                      .+++......                  .+.+.+++..++.|++.+...|+..+++.+.+|+++      ..++.++.+.
T Consensus        91 ~L~~l~~~~~------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~  146 (524)
T PF05977_consen   91 LLAVLAFFGL------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSI  146 (524)
T ss_pred             HHHHHHHhCc------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHH
Confidence            5554322122                  347888888999999999999999999999999998      8999999999


Q ss_pred             HHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcc
Q 007612          204 ALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGE  283 (596)
Q Consensus       204 ~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  283 (596)
                      ..|+...+||.++|.+....|-.++|.+.++..++.+.++...+++.++++   .+.+.+.+.++...+.          
T Consensus       147 ~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~---~~~e~~~~~l~~G~ry----------  213 (524)
T PF05977_consen  147 SFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSS---LPRERFFSALREGLRY----------  213 (524)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc---cchhhhhhhHHHHHHH----------
Confidence            999999999999999988889899999888776665554444333221111   0101100000000000          


Q ss_pred             cchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHH-HHHhHhHhhh
Q 007612          284 DLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPI-WLCTILYSVV  362 (596)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  362 (596)
                                                                              +.+.+.+...+.. +++.......
T Consensus       214 --------------------------------------------------------v~~~~~l~~~l~~~~~~~l~~~a~  237 (524)
T PF05977_consen  214 --------------------------------------------------------VRSSPPLRSVLLRSFLFNLFASAV  237 (524)
T ss_pred             --------------------------------------------------------HhcchHHHHHHHHHHHHHHhhhHH
Confidence                                                                    0001111111111 1111111111


Q ss_pred             hccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHH
Q 007612          363 FTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAM  442 (596)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~  442 (596)
                      ...+ +.+..+..+.+      ....+.+....+++.++.+.+..+    +.+|..        ..+.+..+.++.++++
T Consensus       238 ~aLl-Pl~a~~~l~~~------a~~yGll~a~~gvGai~Gal~~~~----l~~~~~--------~~~lv~~~~~~~a~~~  298 (524)
T PF05977_consen  238 WALL-PLFARDVLGGG------ASGYGLLLAAFGVGAILGALLLPR----LRRRLS--------SRRLVLLASLLFALAL  298 (524)
T ss_pred             HHhh-hHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHHHHH----hhcccC--------cchhhHHHHHHHHHHH
Confidence            1111 11111111111      111223333444555555555443    223322        3345667777777777


Q ss_pred             HHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Q 007612          443 LAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYV  522 (596)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l  522 (596)
                      +.+++.                    .+.+..++.+++.|++.....+...+...+..|+++||++.|++.+....+..+
T Consensus       299 ~~lal~--------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l  358 (524)
T PF05977_consen  299 LLLALS--------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL  358 (524)
T ss_pred             HHHhcc--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH
Confidence            776653                    245666778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHh
Q 007612          523 SSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIA  572 (596)
Q Consensus       523 g~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~  572 (596)
                      |.++.|.+.+..                +....+.+.++..+++.++.+.
T Consensus       359 Gsll~G~la~~~----------------g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  359 GSLLWGFLADHF----------------GVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHHHHHHh----------------CHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887632                3344565555555555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00889 2A0110 nucleoside transporter

Probab=99.86  E-value=3.7e-19  Score=190.95  Aligned_cols=390  Identities=11%  Similarity=0.060  Sum_probs=223.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007612           46 ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLL  125 (596)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~  125 (596)
                      +.+..++...++-.+.++++.|+++++|++..+.|++.+.+.++..+++++.|+++||+.+||+++.++.++..++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            34445555566666779999999999999999999999999999999999999999997234778888777776776666


Q ss_pred             HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccC--------CccccccccchhhH
Q 007612          126 SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQY--------DEEDAKEGHSKVAF  197 (596)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~--------~~~~~~~~~~r~~~  197 (596)
                      .+.                       +++..+++.|++.+++.+...+...++..+..        ....      |.+.
T Consensus        87 ~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~r~  137 (418)
T TIGR00889        87 AQV-----------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PIRV  137 (418)
T ss_pred             HHh-----------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ceee
Confidence            655                       22666778888888877766666555433222        1112      4444


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccc
Q 007612          198 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVH  277 (596)
Q Consensus       198 ~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (596)
                      +|      .+|.++||.++|.+.....|. +|++.++..++..++.+ ..++.++.+++.+.  +               
T Consensus       138 ~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~--~---------------  192 (418)
T TIGR00889       138 MG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAKM--S---------------  192 (418)
T ss_pred             eh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCcccccc--C---------------
Confidence            43      478888888888774333344 45555544444443322 22221110000000  0               


Q ss_pred             cCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhh-HHHHHHh
Q 007612          278 LSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRL-LPIWLCT  356 (596)
Q Consensus       278 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  356 (596)
                                             .  .+..+ .+..                         ...+.++.+.. +..++..
T Consensus       193 -----------------------~--~~~~~-~~~~-------------------------~~~k~~~~~~~~~~~~~~~  221 (418)
T TIGR00889       193 -----------------------I--KVMLG-LDAF-------------------------ILFKNKRMAIFFFFSMLLG  221 (418)
T ss_pred             -----------------------H--HHHhh-hhHH-------------------------HHhcCCCeeeHHHHHHHHH
Confidence                                   0  00000 0000                         00000111111 1111111


Q ss_pred             HhHhhhhccccceeEeeecccccccc-ccc-cCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHH
Q 007612          357 ILYSVVFTQMASLFVEQGAAMKTTVS-NFR-IPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIG  434 (596)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig  434 (596)
                      ..........+. +... .+.+.... ++. ...+....+..+..++...+.++    +.+|.+        +++.+.++
T Consensus       222 ~~~~~~~~~~~~-~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~----l~dr~g--------~r~~l~~~  287 (418)
T TIGR00889       222 APLQITNIFGNG-FLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPF----FLKRFG--------IKKVMLLS  287 (418)
T ss_pred             hHHHHHHHhHHH-HHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHhC--------cHHHHHHH
Confidence            111111111111 1110 00010000 000 00122222233333444444444    444544        44557788


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHH-
Q 007612          435 LVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCM-  513 (596)
Q Consensus       435 ~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-  513 (596)
                      .++.++++..+....                ......+.+++..++.+++++...+....++.|.+|++.||+++|+.+ 
T Consensus       288 ~~~~~v~~~l~~~~~----------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~  351 (418)
T TIGR00889       288 LVAWALRFGFFAYGD----------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTL  351 (418)
T ss_pred             HHHHHHHHHHHHHcC----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            877777766555421                000122334556788899998888888899999999999999999997 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 007612          514 TSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCI  580 (596)
Q Consensus       514 ~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~  580 (596)
                      +...+|+.+|+.+.|.+.+..+.+.          ..+|+..|++.+++.+++.+.++++.++.++.
T Consensus       352 ~~~~lg~~iGp~l~G~l~~~~g~~~----------~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       352 MCNGFGSLLGYILSGVMVEKMFAYG----------TFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhcccc----------CCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            5678999999999998876432111          12467888888888888888888888766444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.86  E-value=1.5e-19  Score=217.95  Aligned_cols=340  Identities=14%  Similarity=0.078  Sum_probs=195.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHH--HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhH
Q 007612           77 AEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG--IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEI  154 (596)
Q Consensus        77 ~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (596)
                      ...++..+.+.+...++++++|+++||+ |||+++.....  +......+.++.  .                    .++
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~--~--------------------~s~  108 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFH--L--------------------NSV  108 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHH--H--------------------hhH
Confidence            3467778888999999999999999997 99997643222  222222222221  0                    238


Q ss_pred             HHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHH
Q 007612          155 CLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTG  234 (596)
Q Consensus       155 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~  234 (596)
                      +.++++|+++|++.+...|+..+++.+++|+++      |++++|+.+++.++|.++||.++|++.+..+|++.|+..++
T Consensus       109 ~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~  182 (1140)
T PRK06814        109 PLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMG  182 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            889999999999999999999999999999998      99999999999999999999999999999999998855444


Q ss_pred             HHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhh
Q 007612          235 SAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAA  314 (596)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (596)
                      ..++++++.+...+. +..++..+......                                             .+.. 
T Consensus       183 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------------------------------------~~~~-  215 (1140)
T PRK06814        183 IAVLGWLASLFIPKT-GNAAPDLKIDRNII---------------------------------------------RSTI-  215 (1140)
T ss_pred             HHHHHHHHHhhCCCC-CCCCCCCeeccchH---------------------------------------------HHHH-
Confidence            444444433332221 11100000000000                                             0000 


Q ss_pred             hhccccccccccCCCCCCcccCccchhhhhhhhhh-HHHHHHhHhHhhhhccccceeEeeeccccccccccccCCccccc
Q 007612          315 YISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRL-LPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSS  393 (596)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (596)
                                     ..++     .+...+.++.. +..+.....+.....+++.+. ....+.+.      ...+.+..
T Consensus       216 ---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~g~~~------~~~g~~~~  268 (1140)
T PRK06814        216 ---------------TLLK-----YAKADKRIWLAILGISWFWLVGAVVLSQLPLLA-KETLGGDE------NVATLFLA  268 (1140)
T ss_pred             ---------------HHHH-----HHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHcCCch------HHHHHHHH
Confidence                           0000     00011112111 111122222222222322221 11111111      11233344


Q ss_pred             cchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhcccCCCCCCCceeehh
Q 007612          394 FDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECY-RLKYAKTECKHCEGASSLSIF  472 (596)
Q Consensus       394 ~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  472 (596)
                      ...++.++...+.+++.    ++..        ....+..+.++.++..+.+++.... ......-.....- ....+.+
T Consensus       269 ~~~~g~~ig~~~~g~l~----~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~  335 (1140)
T PRK06814        269 VFSVGVAVGSFLASKLS----EGRI--------TLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVF-LSKRHGW  335 (1140)
T ss_pred             HHHHHHHHHHHHHHHHh----CCce--------eeeeehHHHHHHHHHHHHHHhcccccccccccccchhhh-hcccccH
Confidence            44556666666666543    2221        1112333333333333222221000 0000000000000 0012445


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007612          473 WQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMK  532 (596)
Q Consensus       473 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~  532 (596)
                      .+++.+++.|++.++..+...+++.+.+|++.+|+++|+.++.+.+|..+++.+.+.+..
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666778888999999999999999999999999999999999999999999999887753

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.86  E-value=2.5e-19  Score=216.23  Aligned_cols=155  Identities=14%  Similarity=0.131  Sum_probs=123.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNN--AEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF  118 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~--~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~  118 (596)
                      +.+...++..++.++...+....+..++...++.+.  ...+++.+++.++..++++++|+++||+ |||++++++.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence            455555666666666555555555556665666554  3468889999999999999999999997 9999999888766


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      +++.++..++...                    .+.+.++++|++.|++.+...++..+++.|++|+++      |++++
T Consensus        88 ~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~  141 (1146)
T PRK08633         88 VGLTLLIVLAYYL--------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRAN  141 (1146)
T ss_pred             HHHHHHHHHHHHH--------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhh
Confidence            6655554443111                    237889999999999999999999999999999998      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhccc
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDE  222 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~  222 (596)
                      ++...+.++|.++|+.+++++.+.
T Consensus       142 ~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        142 GLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988765

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.86  E-value=1.7e-21  Score=200.13  Aligned_cols=184  Identities=16%  Similarity=0.201  Sum_probs=162.2

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHH
Q 007612           35 AKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIF  114 (596)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~  114 (596)
                      ..+...+.+.+++++..++...-|.+.... .-.++.+|+++++.|++...+.+...++.|+.|+++||| .||+++.+|
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG  104 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVG  104 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeH
Confidence            344555678888888999988888886643 456788999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccch
Q 007612          115 QGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSK  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  194 (596)
                      ..++.++.++.+++                       .+++.+.++|.+.|+|.+.+.|.++++++|.||..+      |
T Consensus       105 ~~iW~~Av~~~~fs-----------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------R  155 (493)
T KOG1330|consen  105 IFIWTLAVFASGFS-----------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------R  155 (493)
T ss_pred             HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------h
Confidence            99999999999988                       348999999999999999999999999999999999      9


Q ss_pred             hhHHHHHHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHHHHHHHhcCcc
Q 007612          195 VAFFSYFYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAALVLFLAGTTR  249 (596)
Q Consensus       195 ~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~  249 (596)
                      ++.++++|++.++|.++|.++++++....+ |||.|+..+++.++..++.++..++
T Consensus       156 s~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  156 SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             hHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence            999999999999999999999999988766 9999999887776666665555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.86  E-value=1.3e-18  Score=190.48  Aligned_cols=177  Identities=15%  Similarity=0.136  Sum_probs=138.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhc----cCchHH-HHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSY----WGRFKT-CAI  113 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~----~Gr~~~-l~~  113 (596)
                      .+|+.+.++...+.+....+.....++.+++ +.|.|..+.+... ..... .++.++.|.++||+    .||||. +.+
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence            3445667777888888888888888888876 4599998888863 23222 36889999999994    188875 667


Q ss_pred             HHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccc
Q 007612          114 FQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHS  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  193 (596)
                      +.+..+++...+++..  |.                  .+.+.+.+.+++.+++.+...+...++..|++|+++      
T Consensus        87 ~~i~~~~~~~~~a~~~--~~------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------  140 (491)
T PRK11010         87 TQLLLLVAIAAMGFLE--PG------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------  140 (491)
T ss_pred             HHHHHHHHHHHHHHcC--Cc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------
Confidence            7767767766666651  11                  347778888999999999999999999999999988      


Q ss_pred             hhhHHHHHHHHHhHHHHHHhhhhhhhcc-cccchHHHHHHHHHHHHHHHHHH
Q 007612          194 KVAFFSYFYLALNLGSLFSNTILGYFED-EGMWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       194 r~~~~~~~~~~~~lg~~~~~~i~g~l~~-~~~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      |+++.++...+.++|..+++.+++++.+ ..|||..|++.++..++..+..+
T Consensus       141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888 57999999988766555544433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.85  E-value=3.7e-21  Score=203.26  Aligned_cols=365  Identities=35%  Similarity=0.563  Sum_probs=236.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccc
Q 007612          108 FKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEED  187 (596)
Q Consensus       108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  187 (596)
                      .|+++++.++..+|.+++.+++..+.              .+++.+...++++.++.++|.|+..|+..++.+|++++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~--------------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~   66 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPS--------------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSS--------------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcch--------------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence            37889999999999999887754222              2334457789999999999999999999999999999873


Q ss_pred             cccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceecc-CCCCChhHH-HHH
Q 007612          188 AKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHF-KPSGNPLAR-FCQ  265 (596)
Q Consensus       188 ~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~  265 (596)
                      +   ..|.++|+++|++.|+|+.+++.+.+++.+.+||.+.|.++.+..+++++.++..+++++++ +|.+.+..+ ...
T Consensus        67 ~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~  143 (372)
T PF00854_consen   67 D---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKL  143 (372)
T ss_dssp             T---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHH
T ss_pred             h---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHH
Confidence            1   11889999999999999999999999999999999999999999999999999988888887 566666665 444


Q ss_pred             HHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCc-ccCccchhhhh
Q 007612          266 VIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWR-LCPVTQVEEVK  344 (596)
Q Consensus       266 ~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  344 (596)
                      +.....+++....|....++.......+......      ..... ........+.        ..|. .+..++++..+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~k  208 (372)
T PF00854_consen  144 VLVAAFKKRKLAVPKGSSWLDWALFQYSERSIFG------IIVFI-RAAVIFFPEI--------FFWALFCQVQRVEELK  208 (372)
T ss_dssp             HHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCC------CCCHH-HHHHHHCCCH--------HHHTTTSSTTTHHHCC
T ss_pred             HHHHHHHHhhcccccchHHHHHhhhhhhhhhhhh------hhhhc-cchhhhhhhh--------hhcccCCccceeeeee
Confidence            5555555555554433333322211110000000      00000 0111111100        0010 02233445666


Q ss_pred             hhhhhHHHHHHhHhHhhhhccccceeEeeeccccccccc-cccCCccccccchhhHHHHHHhhhhhhhcccccccccCCC
Q 007612          345 CILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSN-FRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSK  423 (596)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~  423 (596)
                      .+.+.++.+...+.+.+...+.+.+...+...++..+.+ +..+++.++.++.+..+++.|+.+++++|+.++ +    .
T Consensus       209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~----~  283 (372)
T PF00854_consen  209 ALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-G----I  283 (372)
T ss_dssp             HHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT-------
T ss_pred             eeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-c----c
Confidence            777777777777888888888777777777777767777 889999999999999999999999999998873 2    2


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCch
Q 007612          424 GLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDG  503 (596)
Q Consensus       424 ~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~  503 (596)
                      ..+...++.+|++++.++++..+.++..+.......       ...+.+|.++.+++..++|-+..+...+...|.+|++
T Consensus       284 ~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~  356 (372)
T PF00854_consen  284 QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPC-------GKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSR  356 (372)
T ss_dssp             ----HHHHHHH-HHHHHHHHTTTHHHH---HH-----------TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc-------CCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHh
Confidence            345888999999999999988887765433333221       1234477789999999999999998888777777777


Q ss_pred             hHHHHHHHHHHHH
Q 007612          504 LKSFGSALCMTSI  516 (596)
Q Consensus       504 ~rg~~~gl~~~~~  516 (596)
                      ..+..+|+++...
T Consensus       357 ~p~~m~~~~~~~~  369 (372)
T PF00854_consen  357 APSSMMGIWFALS  369 (372)
T ss_dssp             -SSSSTHHHHHHH
T ss_pred             hhHHHHHHHHHHh
Confidence            7777777665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.85  E-value=1.1e-19  Score=191.11  Aligned_cols=160  Identities=13%  Similarity=0.129  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      ..++.++..+......+...+++|.++++++|+|+.+.+++.+.+.++..++.++.|+++||+ |||+.++++.++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            456777777777888888888888789999999999999999999999999999999999997 9999999999999999


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      .++++++   +                   .+.+.++++|+++|++.+.. +...++++|++|+++      |+++.+++
T Consensus        81 ~~~~~~~---~-------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~  131 (366)
T TIGR00886        81 CLWAGLA---V-------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLA  131 (366)
T ss_pred             HHHHHHH---h-------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHH
Confidence            8888877   2                   03788889999999986654 667889999999988      99999998


Q ss_pred             HHHHhHHHHHHhhhhhhhcc----------cccchHHHHH
Q 007612          202 YLALNLGSLFSNTILGYFED----------EGMWALGFWV  231 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g~l~~----------~~~~~~~f~~  231 (596)
                      ....++|..+++.+++.+..          ..+|++.|++
T Consensus       132 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       132 AGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            87778888877777665543          3489999944

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.85  E-value=1.2e-24  Score=235.68  Aligned_cols=399  Identities=15%  Similarity=0.113  Sum_probs=241.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHH
Q 007612           77 AEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICL  156 (596)
Q Consensus        77 ~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (596)
                      .+.++..+...++..++++++|+++||+ |||++++++.++..++.++..++...                    .+.+.
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~--------------------~~~~~  104 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY--------------------NNFWM  104 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc--------------------ccccc
Confidence            3468899999999999999999999997 99999999999999999999888210                    13788


Q ss_pred             HHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc---ccchHHHHHHH
Q 007612          157 FYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE---GMWALGFWVST  233 (596)
Q Consensus       157 l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~---~~~~~~f~~~~  233 (596)
                      +.++|++.|++.|+..+....++.|..|++.      |+...++.+....+|..++..++-.+.+.   .+||+.+.+..
T Consensus       105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~  178 (451)
T PF00083_consen  105 LLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGA  178 (451)
T ss_pred             ccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999      99999999999999998887665444333   34998888776


Q ss_pred             HHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhh
Q 007612          234 GSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRA  313 (596)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (596)
                      +..++.++...                                .+||+|+|+..+++.|++.+..+++.+.+..+. +..
T Consensus       179 ~~~l~~~~~~~--------------------------------~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~-~~~  225 (451)
T PF00083_consen  179 IPSLLVLLLRF--------------------------------FLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDE-EIE  225 (451)
T ss_pred             ccccccccccc--------------------------------ccccccceecccccccccccccccccccccccc-ccc
Confidence            55443322211                                189999999999999999988888544321110 000


Q ss_pred             hhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHh-hhhccccceeEeeeccccccccccccCCc-cc
Q 007612          314 AYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYS-VVFTQMASLFVEQGAAMKTTVSNFRIPPA-SM  391 (596)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  391 (596)
                      .....++   ..+..+..|+...... ..+++++..+.+........ .....+.+..... .         +.... ..
T Consensus       226 ~~~~~~~---~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~---------~~~~~~~~  291 (451)
T PF00083_consen  226 EIKAEKK---ESQESKASWRDLFRNK-KYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-A---------GISNSFLA  291 (451)
T ss_pred             ccccccc---cccccceeeeeccccc-cccccccccccccccccccccccccccccccccc-c---------cccccccc
Confidence            0000000   0001112232221111 11223222222211111111 0111111111111 1         11111 11


Q ss_pred             cccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhcccCCCCCCCceee
Q 007612          392 SSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGI-VECYRLKYAKTECKHCEGASSLS  470 (596)
Q Consensus       392 ~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  470 (596)
                      +....+...+...+..    .+.+|.+ ||+       .+..+..+++++.+.++. ....     ..      .....+
T Consensus       292 ~~~~~~~~~~~~~~~~----~~~~~~G-Rr~-------~~i~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~  348 (451)
T PF00083_consen  292 TLILGLVNFLGTLLAI----FLIDRFG-RRK-------LLIIGLLLMAICSLILGIIFFLG-----VS------SSSWWS  348 (451)
T ss_pred             cccccccccccccccc----ccccccc-ccc-------ccccccccccccccccccccccc-----cc------cccccc
Confidence            1111111111211222    3344554 332       366677766666655541 1000     00      000011


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCc
Q 007612          471 IFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKG  550 (596)
Q Consensus       471 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~  550 (596)
                      ...+...............+..+.+..|.+|.+.|+++.|+....+++++.+++.+.+.+.+..                
T Consensus       349 ~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~----------------  412 (451)
T PF00083_consen  349 ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL----------------  412 (451)
T ss_pred             cccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence            2222222122222222345677788899999999999999999999999988887766544311                


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhcccccccchhhhhhh
Q 007612          551 HLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAE  588 (596)
Q Consensus       551 ~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~~~~~~~~~  588 (596)
                      +....|+..++++++..++.+++.+|+|++++||.++.
T Consensus       413 ~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  413 GGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             cccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            11235677788888988999999999999999987653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.85  E-value=2.8e-19  Score=182.73  Aligned_cols=392  Identities=14%  Similarity=0.011  Sum_probs=255.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHH
Q 007612           37 SGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG  116 (596)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~  116 (596)
                      +.++|.++.... .+...+....+.+.+.+++++++|+|+.|.+++.++..+...+..++-|++.||+ |.|++..++.+
T Consensus        10 ~~~~~~L~~S~~-af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~   87 (417)
T COG2223          10 RIARRNLWLSTL-AFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML   87 (417)
T ss_pred             cchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence            345555554433 3334444445556677788899999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      +.++-.+.++++.+.|+                    .+.+++.+.+.|++ |+.+....+.++.+||+|+      +|.
T Consensus        88 l~~IP~~~~~~a~~~~~--------------------~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~------qG~  140 (417)
T COG2223          88 LLLIPCLGLAFAVTYPS--------------------TWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK------QGL  140 (417)
T ss_pred             HHHHHHHHHHHHccCCc--------------------hHHHHHHHHHHhcc-cceehcccccccccCChhh------hhH
Confidence            99999999999865444                    57888899999988 5567888999999999999      999


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhccccc---chHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHh
Q 007612          197 FFSYFYLALNLGSLFSNTILGYFEDEGM---WALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKK  273 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i~g~l~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (596)
                      +++++. ..|+|..+...++..+....+   |+.+..+..+..++..+..++..+..++.++..++..            
T Consensus       141 AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~------------  207 (417)
T COG2223         141 ALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL------------  207 (417)
T ss_pred             HHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc------------
Confidence            999999 899999999999998888888   9988888887777777777666554333222111100            


Q ss_pred             hccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHH
Q 007612          274 WRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIW  353 (596)
Q Consensus       274 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (596)
                           |                            .++                           +.+..++..+.+..+-
T Consensus       208 -----~----------------------------~~~---------------------------~~v~~~~~~W~lsllY  227 (417)
T COG2223         208 -----P----------------------------AQL---------------------------KAVFSNKDTWLLSLLY  227 (417)
T ss_pred             -----h----------------------------hHH---------------------------HHHhcCcchHHHHHHH
Confidence                 0                            000                           0011112222222222


Q ss_pred             HHhHhHhhhhc-cccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHH
Q 007612          354 LCTILYSVVFT-QMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMG  432 (596)
Q Consensus       354 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~  432 (596)
                      ..+..-++.+. +++.++..+ ...+      ....+......+....+.=|+.+++    .||++        ..+.+.
T Consensus       228 ~~tFG~Fvgfs~~l~~~~~~~-fg~~------~~~Ag~~a~~f~~~g~l~Rp~GG~L----sDR~G--------g~rv~~  288 (417)
T COG2223         228 FATFGGFVGFSAYLPMYLVTQ-FGLS------PVTAGLIAFLFPLIGALARPLGGWL----SDRIG--------GRRVTL  288 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCCC------hhhHHHHHHHHHHHHHHHHhccchh----hhhcc--------chhHHH
Confidence            22222222221 111111111 1111      1112233333344444444555543    44544        444566


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHH
Q 007612          433 IGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALC  512 (596)
Q Consensus       433 ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~  512 (596)
                      +.+..++++..........            + ....+....+..++.+++..+..+-..+-++..++|+ +.|.+.|+.
T Consensus       289 ~~f~~~~~~~~~l~~~~~~------------~-~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~v  354 (417)
T COG2223         289 AVFVGMALAAALLSLFLTG------------F-GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIV  354 (417)
T ss_pred             HHHHHHHHHHHHHHccccc------------c-ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHH
Confidence            6777777776666543210            0 0012333334444445555555555556666667764 689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 007612          513 MTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYK  578 (596)
Q Consensus       513 ~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~  578 (596)
                      ...+.+|+++-|...+...+.+               +.++..|+.+..+.+++.+..+..+.+.+
T Consensus       355 ga~G~lGGf~lp~~~g~~~~~t---------------g~~~~~f~~~~~~~~~a~v~~~~~y~r~~  405 (417)
T COG2223         355 GAIGGLGGFFLPLAFGVSLDLT---------------GSYTGAFMLLLAFYLVALVLTWALYARRR  405 (417)
T ss_pred             HHhccccccchhHHHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999776643               34577899999999999988887766543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.84  E-value=2.2e-18  Score=182.90  Aligned_cols=336  Identities=11%  Similarity=0.048  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCch----HHHHHHHHHHHHHHHHH
Q 007612           50 QGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRF----KTCAIFQGIFVIGLVLL  125 (596)
Q Consensus        50 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~----~~l~~~~~~~~~~~~~~  125 (596)
                      .++...++..+.+++|.|++ ++|.|..+.|++.+.+.+...+++++.|+++||+ ||+    +.+.+...+.   ...+
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHH
Confidence            44444556677788999985 5899999999999999999999999999999997 984    3332221111   1111


Q ss_pred             HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHH
Q 007612          126 SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLAL  205 (596)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  205 (596)
                      ...                      .++.+.+++.|++.|++.+...|...++..++  +++      |++.++..+...
T Consensus        88 ~~~----------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~  137 (382)
T PRK11128         88 WFG----------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWG  137 (382)
T ss_pred             HHh----------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHH
Confidence            111                      13478888899999999998999888887776  334      667777778888


Q ss_pred             hHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccc
Q 007612          206 NLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDL  285 (596)
Q Consensus       206 ~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l  285 (596)
                      ++|.++||.+++++.+++||+..|++.++..++..+... ..++.   +|++++.                    ++   
T Consensus       138 ~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~~~~--------------------~~---  190 (382)
T PRK11128        138 SIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQGESR--------------------QQ---  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCccccc--------------------cc---
Confidence            999999999999999999999999877654443333222 22211   1100000                    00   


Q ss_pred             hhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHH-HHHHhHhHhhhhc
Q 007612          286 YVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLP-IWLCTILYSVVFT  364 (596)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  364 (596)
                           .       +    ...                       ..+     .++.+.|..+.... .++....+.....
T Consensus       191 -----~-------~----~~~-----------------------~~~-----~~i~~~~~~~~~~~~~~l~~~~~~~~~~  226 (382)
T PRK11128        191 -----E-------S----AGW-----------------------PAW-----KALLKEPTVWRFLLCVSLLQGSHAAYYG  226 (382)
T ss_pred             -----c-------c----ccc-----------------------chH-----HHHHcChhHHHHHHHHHHHHHHhHhHHH
Confidence                 0       0    000                       000     00111122222211 1122222222222


Q ss_pred             cccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 007612          365 QMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLA  444 (596)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~  444 (596)
                      ..+. +..+ .+.+..      ..+.+..+..+..++...+.+    ++.||++        .++.+..+.++.+++++.
T Consensus       227 ~~~~-~~~~-~g~s~~------~~g~~~~~~~~~~~~~~~~~g----~l~~r~~--------~~~~l~~~~~~~~~~~~~  286 (382)
T PRK11128        227 FSAI-YWQA-AGYSAS------TIGYLWSLGVVAEVLIFAFSN----RLFRRWS--------ARDLLLLSAICGVVRWGL  286 (382)
T ss_pred             HHHH-HHHH-CCCCHh------HHHHHHHHHHHHHHHHHHHHH----HHHHHCC--------HHHHHHHHHHHHHHHHHH
Confidence            1111 1111 111111      111222222233333333333    4455554        555677787777777666


Q ss_pred             HHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHH-HHHHHHHHHH
Q 007612          445 AGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCM-TSISLGNYVS  523 (596)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~lg  523 (596)
                      .+..                    .+.+.+++..++.|++.+...+....+..+. |++.+++.+++.+ ....+|..+|
T Consensus       287 ~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig  345 (382)
T PRK11128        287 MGST--------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIM  345 (382)
T ss_pred             HHhh--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHH
Confidence            5542                    2455666778888999999889988888887 5566789999887 4467788999


Q ss_pred             HHHHHHHHh
Q 007612          524 SLLLTMVMK  532 (596)
Q Consensus       524 ~~l~~~i~~  532 (596)
                      +.+.|.+.+
T Consensus       346 ~~i~G~l~~  354 (382)
T PRK11128        346 TVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHH
Confidence            999998876

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.83  E-value=1.5e-17  Score=177.61  Aligned_cols=167  Identities=17%  Similarity=0.116  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhcc----CchH-HHHHHHHHHHH
Q 007612           46 ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYW----GRFK-TCAIFQGIFVI  120 (596)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~----Gr~~-~l~~~~~~~~~  120 (596)
                      .+..++.+.+.+.....-+|.|+++ .|+|..+.|++......  .+..++.|+++||+.    |||| .++++.++.++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            4566777788888888889999974 69999999999776665  689999999999951    6665 68888888877


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +...+.+...                    ..+.+.+++..++.++..+...++..+++.|++|+++      |+++.++
T Consensus        81 ~~~~l~~~~~--------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~  134 (402)
T PRK11902         81 SIAAMAFCPP--------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAV  134 (402)
T ss_pred             HHHHHHhcCc--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHH
Confidence            7777666511                    1235666667677788888889999999999999998      9999999


Q ss_pred             HHHHHhHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHHHH
Q 007612          201 FYLALNLGSLFSNTILGYFEDE-GMWALGFWVSTGSAFAALV  241 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~-~~~~~~f~~~~~~~~~~~~  241 (596)
                      ...+.++|..+++.+++++.+. .||+..|++.++..++..+
T Consensus       135 ~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        135 KVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL  176 (402)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888875 5999999987766554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.83  E-value=9.3e-18  Score=179.58  Aligned_cols=170  Identities=11%  Similarity=0.048  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGL  122 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~  122 (596)
                      +++++...+...+.+....+.+ +.+++++|+++.+.+++.+.+.++..+++++.|++.||+ |||++++++.++++++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            4555555555555543333444 566889999999999999999999999999999999997 99999999999999998


Q ss_pred             HHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHH
Q 007612          123 VLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFY  202 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  202 (596)
                      +++..+...                    .+++.+++.|++.|+|.|...+..++++.+..|+++      |++..++.+
T Consensus        83 ~l~~~~~~~--------------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~  136 (410)
T TIGR00885        83 FLFWPAAEI--------------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQ  136 (410)
T ss_pred             HHHHHHHhh--------------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHH
Confidence            776554221                    237888999999999999999999999999998888      888899999


Q ss_pred             HHHhHHHHHHhhhhhhhcc--------------------------cccchHHHHHHHHHHHHHH
Q 007612          203 LALNLGSLFSNTILGYFED--------------------------EGMWALGFWVSTGSAFAAL  240 (596)
Q Consensus       203 ~~~~lg~~~~~~i~g~l~~--------------------------~~~~~~~f~~~~~~~~~~~  240 (596)
                      ...++|..++|.+++.+..                          ..+|+++|++.++..++..
T Consensus       137 ~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~  200 (410)
T TIGR00885       137 SFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA  200 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887642                          1369999987766544443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00896 CynX cyanate transporter

Probab=99.82  E-value=1.1e-18  Score=183.09  Aligned_cols=327  Identities=12%  Similarity=0.112  Sum_probs=203.7

Q ss_pred             HHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q 007612           61 GVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCG  140 (596)
Q Consensus        61 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (596)
                      .+.+ +.+.+++|++..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+.. .+   +        
T Consensus        20 ~~~l-p~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~---~--------   85 (355)
T TIGR00896        20 GPLL-PQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA---P--------   85 (355)
T ss_pred             cccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh---c--------
Confidence            3444 456779999999999999999999999999999999997 99999999988777776655 33   2        


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhc
Q 007612          141 NELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFE  220 (596)
Q Consensus       141 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~  220 (596)
                                  +...+++.|++.|++.+...+.....+.|.+| ++      |++++++++...++|..+++.+++.+.
T Consensus        86 ------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~  146 (355)
T TIGR00896        86 ------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLA  146 (355)
T ss_pred             ------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        26778899999999999888888888888886 46      899999999999999999999988887


Q ss_pred             ccc--cchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCC
Q 007612          221 DEG--MWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGN  298 (596)
Q Consensus       221 ~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~  298 (596)
                      +..  +|++.|.+.++..++.... +.  ++.+++++++++                       .               
T Consensus       147 ~~~~~~w~~~f~~~~~~~~~~~~~-~~--~~~~~~~~~~~~-----------------------~---------------  185 (355)
T TIGR00896       147 QHSGGHWQQALAWWALPALLALLA-WI--PQVRRRVAANQT-----------------------T---------------  185 (355)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHH-Hh--hhhccccCCCCC-----------------------C---------------
Confidence            654  3888887665443332221 11  111110000000                       0               


Q ss_pred             CccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccceeEeeecccc
Q 007612          299 RNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMK  378 (596)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (596)
                      .                            ...+++     ..++++.+...+...+....+.....+.+.++..  .+.+
T Consensus       186 ~----------------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~g~~  230 (355)
T TIGR00896       186 T----------------------------RLTPVR-----IWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS--HGAS  230 (355)
T ss_pred             C----------------------------CCCCch-----hhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC
Confidence            0                            000000     0011111111111122222233322223222211  1111


Q ss_pred             ccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 007612          379 TTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKT  458 (596)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~  458 (596)
                      ..      ..+.......++.++..++.+++    .||.+ +      +++.+.++..+.+++.+......         
T Consensus       231 ~~------~~g~~~~~~~~~~i~~~~~~g~l----~dr~~-~------~~~~~~~~~~~~~~~~~~~~~~~---------  284 (355)
T TIGR00896       231 AA------TAGSLLALMQLAQAASALLIPAL----ARRVK-D------QRGIVAVLAVLQLVGLCGLLFAP---------  284 (355)
T ss_pred             HH------HHHHHHHHHHHHHHHHHHhHHHH----Hhhhc-c------chHHHHHHHHHHHHHHHHHHHhh---------
Confidence            11      12233333445555666666654    34442 1      22345566666666665554421         


Q ss_pred             cCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007612          459 ECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAP-DGLKSFGSALCMTSISLGNYVSSLLLTMVMKIS  534 (596)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~  534 (596)
                                .+..+  ...++.|++.+...+...+.+.+..+ ++.++..+++.+....+++.++|.+.+.+.+.+
T Consensus       285 ----------~~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       285 ----------MHGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             ----------hhHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      01111  13467788988888887777765554 577899999999999999999999999887644

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.82  E-value=3.4e-18  Score=180.63  Aligned_cols=154  Identities=18%  Similarity=0.118  Sum_probs=113.4

Q ss_pred             HHHHHHHhhC--CChHHHHHHHHHH-----HHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccC
Q 007612           64 LVLFLTRVLQ--QNNAEAANNVSKW-----TGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRP  136 (596)
Q Consensus        64 l~~yl~~~lg--~~~~~~~~~~~~~-----~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  136 (596)
                      ...++.++..  .++++.+...+..     .+...+++++.|+++||+ ||||+++++.++..++.++++++.+.+..  
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--   91 (394)
T TIGR00883        15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI--   91 (394)
T ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh--
Confidence            4445555443  4445555544432     223346789999999997 99999999999999998888877221110  


Q ss_pred             CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhh
Q 007612          137 RGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTIL  216 (596)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~  216 (596)
                                   .......++++|+++|++.+...+...+++.|.+|+++      |++..++.+.+..+|..+++.++
T Consensus        92 -------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~  152 (394)
T TIGR00883        92 -------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTV  152 (394)
T ss_pred             -------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHH
Confidence                         00112468889999999999999999999999999988      99999999999999999998876


Q ss_pred             hhhc--------ccccchHHHHHHHHHHHHH
Q 007612          217 GYFE--------DEGMWALGFWVSTGSAFAA  239 (596)
Q Consensus       217 g~l~--------~~~~~~~~f~~~~~~~~~~  239 (596)
                      +.+.        +..+|++.|++..+..++.
T Consensus       153 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  183 (394)
T TIGR00883       153 LLLSYLLGDDALLEWGWRIPFLVSAVLVLIG  183 (394)
T ss_pred             HHHHHhcCHHHhhccchHHHHHHHHHHHHHH
Confidence            6543        3568999998766554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.81  E-value=1.1e-17  Score=175.64  Aligned_cols=153  Identities=13%  Similarity=0.143  Sum_probs=117.0

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhc----cCchHHH-HHHHHHHHHHHHHHHhhhccccccCCC
Q 007612           64 LVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSY----WGRFKTC-AIFQGIFVIGLVLLSLSSYLFLIRPRG  138 (596)
Q Consensus        64 l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~----~Gr~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (596)
                      ..+.+.++.|+|.++.++.... .+...+ .++.|.++||+    +||||.+ +.+.++.++....+++...        
T Consensus        10 ~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~--------   79 (356)
T TIGR00901        10 TLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP--------   79 (356)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc--------
Confidence            3344456789999999998655 343444 88999999996    3898874 5666666666666655411        


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhh
Q 007612          139 CGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGY  218 (596)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~  218 (596)
                                  ..+.+.+.+..++.+++.+...++..+++.|++|+++      |+++.++...+.++|.++++.++++
T Consensus        80 ------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~  141 (356)
T TIGR00901        80 ------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALV  141 (356)
T ss_pred             ------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHH
Confidence                        1235556666677788888888999999999999988      9999999999999999999999998


Q ss_pred             hccccc--------chHHHHHHHHHHHHHHHHHH
Q 007612          219 FEDEGM--------WALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       219 l~~~~~--------~~~~f~~~~~~~~~~~~~~~  244 (596)
                      +.+..+        ||..|++.++..++..+..+
T Consensus       142 l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       142 LASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            888777        99999988876665554433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.81  E-value=5.8e-17  Score=174.21  Aligned_cols=446  Identities=10%  Similarity=0.013  Sum_probs=255.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhh----hccCchHHHHHH-H
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSD----SYWGRFKTCAIF-Q  115 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laD----r~~Gr~~~l~~~-~  115 (596)
                      ++++.++...++..+.+-...++++.|+ +++|.+....+.+..+..+...+.+|+.|+++|    |+ ||||.++++ .
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~   81 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGA   81 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHH
Confidence            4566777777788888777778888876 589999999999999999999999999999999    46 999998775 5


Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          116 GIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      +..+++.++++++.+...+.     -|+.. +..........+++..+..++....++...++++|.+|+++++    ++
T Consensus        82 ~~~~~~l~ll~~~~~~~~~~-----~~~~~-~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~  151 (477)
T TIGR01301        82 ALVAFAVILIGFAADIGHLF-----GDNLD-KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TR  151 (477)
T ss_pred             HHHHHHHHHHHhCchhhhhc-----ccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HH
Confidence            56666666666652211000     00000 0000111133444444556677888888999999999988721    35


Q ss_pred             hHHHHHHHHHhHHHHHHhhhhhhh--ccc-------------ccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChh
Q 007612          196 AFFSYFYLALNLGSLFSNTILGYF--EDE-------------GMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPL  260 (596)
Q Consensus       196 ~~~~~~~~~~~lg~~~~~~i~g~l--~~~-------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (596)
                      .+.++.+...++|.++|+.++++.  .+.             .+.+..|++.++..++..++..+..+|.+..++++.. 
T Consensus       152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~-  230 (477)
T TIGR01301       152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI-  230 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch-
Confidence            789999999999999999888764  111             1578889988877777766666555543221110000 


Q ss_pred             HHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccch
Q 007612          261 ARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQV  340 (596)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (596)
                                            ++.++.+ +           ..+..                      ..++.+. +.+
T Consensus       231 ----------------------~~~~~~~-~-----------~~~~~----------------------~~~~~i~-~~~  253 (477)
T TIGR01301       231 ----------------------NSEAAPP-S-----------KHGEE----------------------AFFGELF-GAF  253 (477)
T ss_pred             ----------------------hhhcccc-c-----------ccchh----------------------hhHHHHH-HHH
Confidence                                  0000000 0           00000                      0000000 000


Q ss_pred             h-hhhhhhhhHHHHHHhHhHhhhhccccceeEeee-ccccccccccccCCc-cccccchhhHHHHHHhhhhhhhcccccc
Q 007612          341 E-EVKCILRLLPIWLCTILYSVVFTQMASLFVEQG-AAMKTTVSNFRIPPA-SMSSFDILSVAAFIFLYRRVIEPLAGGI  417 (596)
Q Consensus       341 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~r~  417 (596)
                      + .-|...+.+...++...-+..+..+.+.++-+. .+-+.+- +-....+ -+.........+...+.+.++.++.+|.
T Consensus       254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~-~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~  332 (477)
T TIGR01301       254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQ-GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW  332 (477)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1 112233333333333333334444444333211 1101000 0000000 0011111111122223333444555555


Q ss_pred             cccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC-CCCceeehhHHHHHHHHHHHHHHhhhhhHHHHH
Q 007612          418 RKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHC-EGASSLSIFWQVPQYALIGASEVFMYVAQLEFF  496 (596)
Q Consensus       418 ~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  496 (596)
                      + +      ++....++.++.++++....++....-+..+.++.+. -.++....+..+..+.+.|+..+..+..-++++
T Consensus       333 g-~------~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~  405 (477)
T TIGR01301       333 G-A------GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALA  405 (477)
T ss_pred             c-c------chhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence            4 1      1234477878888888777654310000000000000 001111146677788999999999999999999


Q ss_pred             HhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhc
Q 007612          497 NAQAPD--GLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACA  574 (596)
Q Consensus       497 ~~~~P~--~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~  574 (596)
                      ++..|+  +..|..+|+.|++.-+...+..+..+.+.+..++              +...++.+.++.++++.++.++..
T Consensus       406 s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~  471 (477)
T TIGR01301       406 SIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILL  471 (477)
T ss_pred             HHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhC
Confidence            999995  4559999999999999999998888875543322              123467888888888888888888


Q ss_pred             cccc
Q 007612          575 KWYK  578 (596)
Q Consensus       575 ~~~~  578 (596)
                      |+.+
T Consensus       472 ~~~~  475 (477)
T TIGR01301       472 PRPR  475 (477)
T ss_pred             CCCC
Confidence            7754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.80  E-value=2.8e-17  Score=179.10  Aligned_cols=388  Identities=13%  Similarity=0.045  Sum_probs=216.1

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCC
Q 007612           63 NLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNE  142 (596)
Q Consensus        63 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (596)
                      ....++..++|-+ ....|+.+...++..+..++.|+++|.+ |||..++++.++..+|.++++-+              
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA--------------  128 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA--------------  128 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC--------------
Confidence            4456788888876 4457899999999999999999999997 99999999999999999999877              


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc
Q 007612          143 LTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE  222 (596)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~  222 (596)
                               ++...++.+..+.|+|.|... .....++|..|.+.      |..+..+......+....+|.++..+..+
T Consensus       129 ---------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~  192 (599)
T PF06609_consen  129 ---------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAH  192 (599)
T ss_pred             ---------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccC
Confidence                     347789999999999976654 55666899999888      87777766665555566777777777667


Q ss_pred             ccchHHHHHHHHHHHHHHHH-HHhcCcceecc-CCCCCh----h--HHHHHHHHHHHHhhccccCCCc-cc-chhcccCC
Q 007612          223 GMWALGFWVSTGSAFAALVL-FLAGTTRYRHF-KPSGNP----L--ARFCQVIVAATKKWRVHLSAEG-ED-LYVIDAND  292 (596)
Q Consensus       223 ~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~----~--~~~~~~~~~~~~~~~~~~p~~~-~~-l~~~~~~~  292 (596)
                      .+|||.|++..+...++++. +++.++..+.+ +.++.+    .  .|....+.....---...|-+- .. -+.|.   
T Consensus       193 ~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~---  269 (599)
T PF06609_consen  193 SGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWK---  269 (599)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCC---
Confidence            89999999988765555433 33333322211 111111    1  1222222221111111111110 00 01111   


Q ss_pred             CCCCCCCccccccccchhhh--hhhhccccccccccCCCCCCcccCccchhhhhhhhhhH-HHHHHhHhHhhhhccccce
Q 007612          293 SSTNGNRNMLHTHGFKFLDR--AAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLL-PIWLCTILYSVVFTQMASL  369 (596)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  369 (596)
                                ..+...-+-.  ..++...-+ |.....+.|.-  +...+++.|.+...+ ..+.....|+.....++  
T Consensus       270 ----------Sa~VIa~lviG~~~Lv~F~~w-E~~~~~~~Pl~--P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p--  334 (599)
T PF06609_consen  270 ----------SAHVIAPLVIGFVLLVAFVVW-EWFGAPKDPLF--PHRLFKDRRGFAALLVISFISGMNFFSVNILWP--  334 (599)
T ss_pred             ----------CccchhhHHHHHHHHHHHHHh-hhhccCCCCcC--CHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence                      1111100000  001100000 11111123321  111122223322221 12222222322222222  


Q ss_pred             eEeeeccc-cccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 007612          370 FVEQGAAM-KTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIV  448 (596)
Q Consensus       370 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~  448 (596)
                        ++..++ +....+. ...........++..+.+.+.+.+..+. ||          .+..++++.+++.+.+..++..
T Consensus       335 --~~~~~vf~~d~~~~-~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~----------~Kw~li~~~~~~ta~~Gama~~  400 (599)
T PF06609_consen  335 --QQVVNVFGSDPISI-TEIGWISSPVGFGSCAGAVILGLLFSKI-RH----------IKWQLIFGSVLMTAFCGAMAAV  400 (599)
T ss_pred             --HHHhhhccCCCccc-ceeehhhhhHHHHHHHHHHHHHHHHHHc-cc----------hhHHHHHHHHHHHHHHHHHHHc
Confidence              211111 1100000 0122334444555555555555443322 22          2344667777766665555543


Q ss_pred             HhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007612          449 ECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLT  528 (596)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~  528 (596)
                      ..+                  +....+...++.+++.+...........-..|++..|+++|+..+.+.+|+.+|..+..
T Consensus       401 ~~~------------------n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  401 RPD------------------NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             cCC------------------CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            211                  22222344567777877777777777888899999999999999999999999999887


Q ss_pred             HHHh
Q 007612          529 MVMK  532 (596)
Q Consensus       529 ~i~~  532 (596)
                      .+..
T Consensus       463 ~I~~  466 (599)
T PF06609_consen  463 AIFT  466 (599)
T ss_pred             HHHH
Confidence            6553

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09848 glucuronide transporter; Provisional

Probab=99.80  E-value=2.4e-16  Score=170.89  Aligned_cols=360  Identities=13%  Similarity=0.072  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhc---cCchHHH-HHHHHHHHHH
Q 007612           46 ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSY---WGRFKTC-AIFQGIFVIG  121 (596)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Gr~~~l-~~~~~~~~~~  121 (596)
                      -....+..+..+..+.++++.|+++.+|+++.++|.+.+...+...+..++.|+++||.   +||||.. +++.+...+.
T Consensus        13 yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~   92 (448)
T PRK09848         13 YSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF   92 (448)
T ss_pred             hccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence            33455666777777778889999999999999999999999999999999999999994   2666654 5555544444


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      .+++...   |.             ...........++...+.+++.+...+...++..++.++.++     |.+..++.
T Consensus        93 ~~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~r  151 (448)
T PRK09848         93 SVLVFWV---PT-------------DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAAR  151 (448)
T ss_pred             HHHHHhC---cC-------------CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHHH
Confidence            4443222   10             000112233444455667788888888888887777655332     77776665


Q ss_pred             HHH-----HhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhcc
Q 007612          202 YLA-----LNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRV  276 (596)
Q Consensus       202 ~~~-----~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (596)
                      .++     .+++..++|.+.+.........+..+.. +..+++.++.+......++..+++.+..               
T Consensus       152 ~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~e~~~~~~~~~---------------  215 (448)
T PRK09848        152 GIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTI-VLAIAGMVLYFICFKSTRENVVRIVAQP---------------  215 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH-HHHHHHHHHHHHHHcCcEeccCCCccCC---------------
Confidence            433     3456666676655432211111111111 1111222222111111111000000000               


Q ss_pred             ccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHH-HHHH
Q 007612          277 HLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLP-IWLC  355 (596)
Q Consensus       277 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  355 (596)
                                                     ...+.                   +     +.+.+.|.+..... .++.
T Consensus       216 -------------------------------~~~~~-------------------~-----~~l~~n~~f~~~~~~~~~~  240 (448)
T PRK09848        216 -------------------------------SLKIS-------------------L-----QTLKRNRPLFMLCIGALCV  240 (448)
T ss_pred             -------------------------------CHHHH-------------------H-----HHHhCCchHHHHHHHHHHH
Confidence                                           00000                   0     00011122222211 1122


Q ss_pred             hHhHhhhhccccceeEeeeccccccccccccCCccccccc-hhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHH
Q 007612          356 TILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFD-ILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIG  434 (596)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig  434 (596)
                      ...+.. +....+++.....+.+..       ...+...+ .+..++..++.++    +.+|.+        .++.+.+|
T Consensus       241 ~~~~~~-~~~~~~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~l~~~----l~~r~g--------~~~~~~~g  300 (448)
T PRK09848        241 LISTFA-VSASSLFYVRYVLNDTGL-------FTVLVLVQNLVGTVASAPLVPG----MVARIG--------KKNTFLIG  300 (448)
T ss_pred             HHHHHH-HhhhheeeEeeecCChHH-------HHHHHHHHHHHHHHHHHHHHHH----HHHHhC--------cHHHHHHH
Confidence            222222 222223333322221111       01111111 2223334444443    344443        44567778


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCch-------hHHH
Q 007612          435 LVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDG-------LKSF  507 (596)
Q Consensus       435 ~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~-------~rg~  507 (596)
                      .++.+++.+.+.+..                  ..+.+.+++.+++.++|++...+..+++..+..|.+       .+|.
T Consensus       301 ~~~~~i~~~~~~~~~------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~  362 (448)
T PRK09848        301 ALLGTCGYLLFFWVS------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGL  362 (448)
T ss_pred             HHHHHHHHHHHHHcC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhH
Confidence            887777766655421                  124455566678889999999999999999988754       4699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007612          508 GSALCMTSISLGNYVSSLLLTMVMKIST  535 (596)
Q Consensus       508 ~~gl~~~~~~lg~~lg~~l~~~i~~~~~  535 (596)
                      .+|+.++.+.+|..+|+.+.+.+.+..+
T Consensus       363 ~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        363 TYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999998876553

>PRK09669 putative symporter YagG; Provisional

Probab=99.78  E-value=1.9e-16  Score=171.45  Aligned_cols=170  Identities=14%  Similarity=0.062  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhh----ccCch-HHHHHHHHHHHHHH
Q 007612           48 LNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDS----YWGRF-KTCAIFQGIFVIGL  122 (596)
Q Consensus        48 ~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr----~~Gr~-~~l~~~~~~~~~~~  122 (596)
                      +..+..+..+..+..+++.|+++.+|+++..++.+.++..+...+..|+.|+++||    + ||| +.++.+.+..+++.
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~   94 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVC   94 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHH
Confidence            44455666666777889999999999999999999999999999999999999999    5 764 55556766666666


Q ss_pred             HHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCc-cccccccchhhHHHHH
Q 007612          123 VLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDE-EDAKEGHSKVAFFSYF  201 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~  201 (596)
                      +++...   |+.              ........+++...+.+.+..+......++.+|+.++ ++      |.+..++.
T Consensus        95 ~l~f~~---p~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------R~~l~~~r  151 (444)
T PRK09669         95 LLTFYT---PDF--------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------RHSLQSWR  151 (444)
T ss_pred             HHHHhC---CCC--------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------HHHHHHHH
Confidence            555443   220              0112345555555566666667777788999998854 44      88888888


Q ss_pred             HHHHhHHHHHHhhhhhhhcc-------cccchHHHHHHHHHHHHHHH
Q 007612          202 YLALNLGSLFSNTILGYFED-------EGMWALGFWVSTGSAFAALV  241 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g~l~~-------~~~~~~~f~~~~~~~~~~~~  241 (596)
                      ....++|+.+++.+...+..       ..+|+..+.+.+++.++..+
T Consensus       152 ~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~  198 (444)
T PRK09669        152 FALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF  198 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence            88888888777654433322       24677666666555444433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=2.7e-17  Score=181.77  Aligned_cols=387  Identities=14%  Similarity=0.051  Sum_probs=229.0

Q ss_pred             HhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCC
Q 007612           70 RVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTH  149 (596)
Q Consensus        70 ~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (596)
                      +..+.+.....+..+++.++..+++++.|.++||+ |||+++++++++.+++.++.+++   +                 
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a---~-----------------  169 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA---P-----------------  169 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh---C-----------------
Confidence            45667788889999999999999999999999995 99999999999999999999888   3                 


Q ss_pred             CchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHH
Q 007612          150 SSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGF  229 (596)
Q Consensus       150 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f  229 (596)
                         ++..+++.|++.|++.++...+...+++|+++++.      |+.+.++ ......++.+++.+++++..  +||+.+
T Consensus       170 ---~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~  237 (521)
T KOG0255|consen  170 ---NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLF  237 (521)
T ss_pred             ---cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHH
Confidence               38999999999999999999999999999999999      9999999 77778888888888888877  799999


Q ss_pred             HHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCcccccc----
Q 007612          230 WVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTH----  305 (596)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~----  305 (596)
                      ++..+..++.++. ++.                               .||+|+|+...++.+++.+..+++...+    
T Consensus       238 ~~~~~~~~~~~~~-~~l-------------------------------~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~  285 (521)
T KOG0255|consen  238 WIISIPSGLFLLL-WFL-------------------------------PPESPRWLLSKGRIDEAIKILKKIAKLNGRKL  285 (521)
T ss_pred             HHHHHHHHHHHHH-HHc-------------------------------cCcChHHHHHcCchHHHHHHHHHHHhhcCCCC
Confidence            9877665555444 222                               3355555555544444333333321110    


Q ss_pred             -ccchhhhhhhhccccccccccCCC-CCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccceeEeeeccccccccc
Q 007612          306 -GFKFLDRAAYISSRDLDEQKQGCS-NPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSN  383 (596)
Q Consensus       306 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (596)
                       .....+.......+   .....++ ..+....... +.++.++.....+   ..+...+...           ..+..+
T Consensus       286 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~-~l~~~~~~~~~~~---~~~~~~y~gl-----------~~~~~~  347 (521)
T KOG0255|consen  286 SVKELLRLELLLRPL---KLLFTEPKISFLDLFRTP-RLRYRTLYLLFIW---FVFSLVYYGL-----------SLNVSG  347 (521)
T ss_pred             CcHHHHHHHHHhhHh---hhhccCCCCchhhhhcCH-HHHHHHHHHHHHH---HHHhHHHHhh-----------hhhhhh
Confidence             00000000000000   0000000 1111000000 0111111111111   1111111110           101000


Q ss_pred             cccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC
Q 007612          384 FRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHC  463 (596)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~  463 (596)
                      .+............ .-.......   ....++.+        ++.....+.++..+++++.++....            
T Consensus       348 lg~~~~~~~~~~~~-~~~p~~~~~---~~~~~~~g--------R~~~~~~~~~~~~~~~~~~~~~~~~------------  403 (521)
T KOG0255|consen  348 LGGNIYLNFTLSGL-VELPAYFRN---GLLLPEFG--------RRPPLFLSLFLAGIGLLLFGWLPDD------------  403 (521)
T ss_pred             cCchHHHHHHHHHH-HHhhHHHHH---HHHHHHhC--------cHHHHHHHHHHHHHHHHHHHHhhcc------------
Confidence            01100000001111 111111111   11222322        4455788888888888887765321            


Q ss_pred             CCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 007612          464 EGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWV  543 (596)
Q Consensus       464 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~  543 (596)
                           ...+.......+..++....+...+.+..|..|+..|+.+.|.......+|+.+++.+......         +.
T Consensus       404 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~---------~~  469 (521)
T KOG0255|consen  404 -----LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ---------MF  469 (521)
T ss_pred             -----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hc
Confidence                 1111222233334444445555558899999999999999999999999999999888754322         10


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccchhhh
Q 007612          544 PGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAK  585 (596)
Q Consensus       544 ~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~~~~~~  585 (596)
                            ...  .+..++..+.+..++..+..++++...+.+.
T Consensus       470 ------~~~--~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t  503 (521)
T KOG0255|consen  470 ------PLL--GLILFGWLALLLGLLSLLLLPETKGKPLPGT  503 (521)
T ss_pred             ------ccc--hHHHHHHHHHHHHHHHHhcCcccCCCCCchh
Confidence                  001  1222466777777777788889888766543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=9.1e-18  Score=172.03  Aligned_cols=440  Identities=13%  Similarity=0.059  Sum_probs=239.1

Q ss_pred             CchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh-------CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCch
Q 007612           39 GWVAGIIILLN---QGLATLAFFGVGVNLVLFLTRVL-------QQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRF  108 (596)
Q Consensus        39 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~yl~~~l-------g~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~  108 (596)
                      .|+.+-.+.++   .+......+.+-...+.+-.-+.       |+++...+.+..+..++.++++++.|+++||+ |||
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK  114 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRK  114 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cch
Confidence            44444444444   44444444444443333322222       25667788899999999999999999999997 999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHhccccccchhhhhhccCCccc
Q 007612          109 KTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSS-LEICLFYLSIYFVALGNGGYQPNIATFGADQYDEED  187 (596)
Q Consensus       109 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  187 (596)
                      +++-..+++++++++.++++..                 .+++ .-..++...|+++|+|.|+-.|...+..+|..-++.
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~-----------------~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~  177 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVG-----------------TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT  177 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCC-----------------CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc
Confidence            9999999999999987766522                 2223 346788899999999999999999999999988777


Q ss_pred             cccccchhhHHH----HHHHHHhHHHHHHhhhhhhhccc-----------ccchHHHHHHHHHHHHHHHHHHhcCcceec
Q 007612          188 AKEGHSKVAFFS----YFYLALNLGSLFSNTILGYFEDE-----------GMWALGFWVSTGSAFAALVLFLAGTTRYRH  252 (596)
Q Consensus       188 ~~~~~~r~~~~~----~~~~~~~lg~~~~~~i~g~l~~~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  252 (596)
                            |++..+    +..++.-.|++++-++.+.+...           .-||..|.+.++..++.+   .+       
T Consensus       178 ------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l---y~-------  241 (538)
T KOG0252|consen  178 ------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL---YF-------  241 (538)
T ss_pred             ------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH---Hh-------
Confidence                  665544    45555666666665555444322           127777666554432222   11       


Q ss_pred             cCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcc-cCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCC
Q 007612          253 FKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVID-ANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNP  331 (596)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (596)
                                            +.+|||++++..-.+ +.+++.++.++....    .++...   ..+   .....+..
T Consensus       242 ----------------------Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~----~~~~~~---~~~---~~~~~~~~  289 (538)
T KOG0252|consen  242 ----------------------RLKMPETARYTALVSKKLKQAAGDMKKVLSV----DIEAES---TAE---SDVPPPSN  289 (538)
T ss_pred             ----------------------hhcCCcchhHHHHhhcCHhhhhhcccccccc----ccchhh---ccc---cCCCCccc
Confidence                                  112555554431111 111111111111100    000000   000   00000111


Q ss_pred             CcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccceeEeeeccccccccccccCCc--ccccc--chhhHHHHH---H
Q 007612          332 WRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPA--SMSSF--DILSVAAFI---F  404 (596)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~---~  404 (596)
                      +..+   ......++ ....++.....|+....-.++.-..|    +.-+...+..++  .+...  ...+..+.+   -
T Consensus       290 ~~~~---F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~----s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~  361 (538)
T KOG0252|consen  290 SFGL---FSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQ----SVIFSAIGVIPSANTYHELFKVAEGNLIIAVCST  361 (538)
T ss_pred             ccch---HHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHH----HHHHHhhccCCCcchHHHHHHHHHHHHHHHHHcc
Confidence            1100   11111122 11223333444433332222211111    111111111111  11000  111111111   1


Q ss_pred             h-hhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHH-HH
Q 007612          405 L-YRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYAL-IG  482 (596)
Q Consensus       405 l-~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~g  482 (596)
                      + .-++..-+.++++        +...-+.|++++++.++.++..-++                ..+..-.++.+.+ .-
T Consensus       362 vPGyw~tv~~id~iG--------Rk~iq~~GF~~~~i~~~~~~~~y~~----------------~~~~~Gf~v~y~l~~f  417 (538)
T KOG0252|consen  362 VPGYWFTVYFIDIIG--------RKYIQLMGFFIMTIFFFVIAGPYNQ----------------LENTIGFVVLYSLTFF  417 (538)
T ss_pred             CCceeEEEEEeehhh--------hHHHHHhhHHHHHHHHHHHcCCccc----------------ccccCceeehHHHHHH
Confidence            1 1122223455554        4456788999999988888763221                0111112223322 23


Q ss_pred             HHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHH
Q 007612          483 ASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGL  562 (596)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i  562 (596)
                      ++.-.-+.....+.+|.+|.+.||+.-|+....+-.|+.+|........+.       .+    ....+..+.|+.+++.
T Consensus       418 f~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~-------~y----p~~~g~~~v~~i~~~~  486 (538)
T KOG0252|consen  418 FGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH-------NY----PPNIGVRNVFIILAGC  486 (538)
T ss_pred             HHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc-------cC----CccccchHHHHHHHHH
Confidence            333334455667888999999999999999999999999998887765431       11    1134557789999999


Q ss_pred             HHHHHHHHHhhcccccccchhhhhhh
Q 007612          563 TTVDFVVYIACAKWYKCIELEAKCAE  588 (596)
Q Consensus       563 ~~i~~~~~~~~~~~~~~~~~~~~~~~  588 (596)
                      +.++.++.+++- |+|++++|+.+.+
T Consensus       487 ~~~gi~~T~l~p-Etk~~~leei~~e  511 (538)
T KOG0252|consen  487 MLLGILFTLLIP-ETKGKSLEEISNE  511 (538)
T ss_pred             HHHhHheeEEee-cccccCHHHhcCh
Confidence            988877766655 9999999876544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.78  E-value=4.1e-16  Score=170.26  Aligned_cols=364  Identities=9%  Similarity=0.010  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhh----hccCc-hHHHHHHHHHHHHH
Q 007612           47 LLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSD----SYWGR-FKTCAIFQGIFVIG  121 (596)
Q Consensus        47 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laD----r~~Gr-~~~l~~~~~~~~~~  121 (596)
                      .+..+..++.+..+..+++.|+++.+|+++..+|.+..+..+...+..|+.|+++|    |+ || |+.++++.+..+++
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~   90 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVV   90 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHH
Confidence            35556667777778899999999999999999999999999999999999999999    65 87 55666677777776


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCC-ccccccccchhhHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYD-EEDAKEGHSKVAFFSY  200 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~  200 (596)
                      .+++...   |+.              ........+++...+.+++..+......++..|+.+ +++      |.+..++
T Consensus        91 ~~llf~~---p~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l~~~  147 (473)
T PRK10429         91 LFLLFSA---HLF--------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQLVPY  147 (473)
T ss_pred             HHHHHcC---CCC--------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHHHHH
Confidence            6655433   210              011223445555556677888888889999999985 555      8898888


Q ss_pred             HHHHHhHHHHHHhhhhhhhcc-------cccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHh
Q 007612          201 FYLALNLGSLFSNTILGYFED-------EGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKK  273 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~-------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (596)
                      .....++|+.+.+.+...+.+       ..+|+....+.+++.++..++.+...++.. +++..++.             
T Consensus       148 ~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~-~~~~~~~~-------------  213 (473)
T PRK10429        148 PRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY-SSDNQVSA-------------  213 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC-Cccccccc-------------
Confidence            777777776666554443221       124555555444443333333333222211 00000000             


Q ss_pred             hccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHH
Q 007612          274 WRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIW  353 (596)
Q Consensus       274 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (596)
                            +                       .+..++.+.-                        +.+.+.|.++..+...
T Consensus       214 ------~-----------------------~~~~~~~~~~------------------------~~~~~n~~~~~ll~~~  240 (473)
T PRK10429        214 ------E-----------------------GSHLTLKDIV------------------------ALIYKNDQLSCLLGMA  240 (473)
T ss_pred             ------c-----------------------ccCCCHHHHH------------------------HHHhcCHHHHHHHHHH
Confidence                  0                       0000000000                        0011113333322222


Q ss_pred             HHhHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHH
Q 007612          354 LCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGI  433 (596)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~i  433 (596)
                      +...........+..++.....+ +..      ....+..+..+..++..++.+++    .+|++        +++.+.+
T Consensus       241 ~~~~~~~~~~~~~~~y~~~y~~~-~~~------~~~~~~~~~~i~~ii~~~~~~~l----~~r~g--------kk~~~~~  301 (473)
T PRK10429        241 LAYNIASNIINGFAIYYFTYVIG-DAD------LFPYYLSYAGAANLVTLILFPRL----VKSLS--------RRILWAG  301 (473)
T ss_pred             HHHHHHHHHHhhheeeEEEEECC-CHH------HHHHHHHHHHHHHHHHHHHHHHH----HHHcC--------cHHHHHH
Confidence            22222222222222333332211 111      01122223334445555555543    44544        3334555


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCC-------chhHH
Q 007612          434 GLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAP-------DGLKS  506 (596)
Q Consensus       434 g~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg  506 (596)
                      +..+.+++.+.......               ..+.+.+.+++..++.+++.+...+..++++.|..+       ++..|
T Consensus       302 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G  366 (473)
T PRK10429        302 ASIFPVLSCGVLLLMGL---------------AAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCES  366 (473)
T ss_pred             HHHHHHHHHHHHHHHhc---------------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchh
Confidence            65555544443322100               001234455556677889999989888899999966       45567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007612          507 FGSALCMTSISLGNYVSSLLLTMVMKIST  535 (596)
Q Consensus       507 ~~~gl~~~~~~lg~~lg~~l~~~i~~~~~  535 (596)
                      ...|+..+...+|..+++.+.+.+.+..+
T Consensus       367 ~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        367 IAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            79999999999999999999998887653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.78  E-value=1.8e-17  Score=185.96  Aligned_cols=205  Identities=17%  Similarity=0.186  Sum_probs=151.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHH
Q 007612           37 SGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG  116 (596)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~  116 (596)
                      ...++.+++.+....+......++.......+.++++++..+.|++.+.+.++..++.++.|+++||+ ||||.+.++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l  106 (633)
T TIGR00805        28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA  106 (633)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence            34455555555545555555556666667778899999999999999999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHhhhcccc----------------ccCCCCCCCCC----------CCCCCC--chhHHHHHHHHHHHHHhc
Q 007612          117 IFVIGLVLLSLSSYLFL----------------IRPRGCGNELT----------PCGTHS--SLEICLFYLSIYFVALGN  168 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~----------~~~~~~--~~~~~~l~~~~~l~g~g~  168 (596)
                      +++++.+++++......                ..+.-|.+..+          .|...+  ...+..++++|+++|+|.
T Consensus       107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~  186 (633)
T TIGR00805       107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA  186 (633)
T ss_pred             HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence            99999999887631000                00112210000          011111  113567889999999999


Q ss_pred             cccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccc----------------------cch
Q 007612          169 GGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEG----------------------MWA  226 (596)
Q Consensus       169 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~----------------------~~~  226 (596)
                      +...+...+++.|++|+++      |+..+++++....+|.++|+.+++++.+.+                      +|+
T Consensus       187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw  260 (633)
T TIGR00805       187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW  260 (633)
T ss_pred             CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence            9999999999999999999      999999999999999999999999877532                      266


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCc
Q 007612          227 LGFWVSTGSAFAALVLFLAGTT  248 (596)
Q Consensus       227 ~~f~~~~~~~~~~~~~~~~~~~  248 (596)
                      ..|++.+++.++..+.++..++
T Consensus       261 l~Fli~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       261 IGFLICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcc
Confidence            6777766655554444444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.78  E-value=3.1e-16  Score=166.24  Aligned_cols=380  Identities=13%  Similarity=0.091  Sum_probs=217.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 007612           47 LLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLS  126 (596)
Q Consensus        47 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~  126 (596)
                      ....+.....+-...++++.|++ +.|+|..|.|.+.+...+...+++++.|.++||+..+||.+.+..++.++...+..
T Consensus         8 s~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    8 SLMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445556788899997 57899999999999999999999999999999974578888777776666555554


Q ss_pred             hhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHh
Q 007612          127 LSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALN  206 (596)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  206 (596)
                      ..                       ++++.+++...+..+......|...++..+...++.        .-++-..+.+.
T Consensus        87 ~~-----------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~--------~~YG~iRlwGS  135 (400)
T PF03825_consen   87 FS-----------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG--------KDYGRIRLWGS  135 (400)
T ss_pred             Hh-----------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc--------CCCCcchhhhh
Confidence            44                       225666666677777777778888888877765322        22333444455


Q ss_pred             HHHHHHhhh-hhhhcccc---cchHHHHHHHHHHHHHHHHHHhcCccee-ccCCCCChhHHHHHHHHHHHHhhccccCCC
Q 007612          207 LGSLFSNTI-LGYFEDEG---MWALGFWVSTGSAFAALVLFLAGTTRYR-HFKPSGNPLARFCQVIVAATKKWRVHLSAE  281 (596)
Q Consensus       207 lg~~~~~~i-~g~l~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  281 (596)
                      +|.+++... ++++....   +....+++.++..++.....+. .++.+ +++.+.+...                    
T Consensus       136 iGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~~--------------------  194 (400)
T PF03825_consen  136 IGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVKK--------------------  194 (400)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCccc--------------------
Confidence            555555332 22222222   2234455544333222222222 22211 0000000000                    


Q ss_pred             cccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhH-HHHHHhHhHh
Q 007612          282 GEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLL-PIWLCTILYS  360 (596)
Q Consensus       282 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  360 (596)
                                               ....                   +.+     +-+++ |+.+.++ ..+..+....
T Consensus       195 -------------------------~~~~-------------------~~~-----~llk~-~~~~~Fll~~~l~~~~~~  224 (400)
T PF03825_consen  195 -------------------------LLGL-------------------DAL-----KLLKN-PRFLVFLLAAFLIGISHA  224 (400)
T ss_pred             -------------------------ccch-------------------HHH-----HHhcC-ccHHHHHHHHHHHHHHHH
Confidence                                     0000                   000     00111 2222222 2222222222


Q ss_pred             hhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHH
Q 007612          361 VVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIV  440 (596)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v  440 (596)
                      ..+. +.+.+..+..+....      .......+..+.-+......+    ++.+|++        ..+.+.++.+..++
T Consensus       225 ~~~~-f~~~yl~~~gg~~~~------~~g~~~~l~~~aEi~~f~~~~----~~~~r~g--------~~~ll~~a~~~~~v  285 (400)
T PF03825_consen  225 AYYT-FFSIYLQELGGYSGS------TIGILWALGVVAEIPFFFFSG----RFLKRFG--------IKWLLLLALVAYAV  285 (400)
T ss_pred             HHHH-HHHHHHHHcccchhh------HHHHHHHHHHHHHHHHHHHHH----HHHHhcC--------HHHHHHHHHHHHHH
Confidence            2222 222222211100000      011111222222223333333    4455554        77889999999999


Q ss_pred             HHHHHHHHHhhhhhhhcccCCCCCCCceeehhH----HHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHH-
Q 007612          441 AMLAAGIVECYRLKYAKTECKHCEGASSLSIFW----QVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTS-  515 (596)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~-  515 (596)
                      -..+++...                   .+.++    ......++|+..+....+...|+.+.+|++.|++++|+++.. 
T Consensus       286 R~~l~a~~~-------------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~  346 (400)
T PF03825_consen  286 RWLLYAYFS-------------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALS  346 (400)
T ss_pred             HHHHHHHhc-------------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence            998888742                   12222    222346799999999999999999999999999999998876 


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 007612          516 ISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWY  577 (596)
Q Consensus       516 ~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~  577 (596)
                      ..+|+.+|..+.|.+.+..+.++          ...+..+|.+.+++.++..+++++..|++
T Consensus       347 ~Glg~~iG~~igG~l~~~~g~~~----------~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  347 FGLGGAIGSLIGGWLYDAFGARG----------MFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhcchh----------hhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            67999999999999887543322          12244567777777777777777776654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.78  E-value=3.2e-17  Score=164.39  Aligned_cols=117  Identities=22%  Similarity=0.189  Sum_probs=104.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchh
Q 007612           74 QNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLE  153 (596)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (596)
                      .+..-+|.+.+.+.+..++.++..|.++||+ |||+++++|.+..++...+.+.+                       .+
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S-----------------------~~  120 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS-----------------------RN  120 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH-----------------------HH
Confidence            3456679999999999999999999999998 99999999999888887777776                       34


Q ss_pred             HHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcc
Q 007612          154 ICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFED  221 (596)
Q Consensus       154 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~  221 (596)
                      +..+.++|++.|+..|-. ..+.++++|.+++++      |+.+++..+.+..+|.++||.|+|++.+
T Consensus       121 F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  121 FAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence            766777799999998875 778899999999998      9999999999999999999999999987

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.77  E-value=4e-16  Score=165.90  Aligned_cols=177  Identities=11%  Similarity=-0.092  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHH--HHHHHHHHHHHhhhH-HHHhhhccCchHHHHHHHHHH-
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANN--VSKWTGTVYIFSLVG-AFLSDSYWGRFKTCAIFQGIF-  118 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~--~~~~~~~~~i~~~~~-G~laDr~~Gr~~~l~~~~~~~-  118 (596)
                      ...++..++.+.+.+..+.+.+|.|++ +.|.|..+.|..  .+...+...+..|+. ++.+||+ ||||..++...+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            566777888899998888899999986 569999999997  456677777777777 5579996 9999876665332 


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .+....+.+..  +.                 ......++....+.++..+...+...++..|..++++      ++...
T Consensus        81 ~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~  135 (390)
T TIGR02718        81 SACLASLALVG--PD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGN  135 (390)
T ss_pred             HHHHHHHHcCC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHH
Confidence            22222222110  11                 0112233344444556666666666777777776666      77777


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhc
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAG  246 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  246 (596)
                      +....+..+|..+|+.+.+++.+..||+..|++.++..++..+..+..
T Consensus       136 ~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       136 AVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            888888899999999888899999999999998887665555444443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.75  E-value=1.9e-16  Score=165.49  Aligned_cols=391  Identities=14%  Similarity=0.086  Sum_probs=222.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +..|......+....+.-...++.+.+++++.|+|..+.|.+.++..+...+.+|+.|.++||. |.||-++....+..+
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence            3556566666666666667789999999999999999999999999999999999999999997 877765544332222


Q ss_pred             --HHHHH-HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh-
Q 007612          121 --GLVLL-SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA-  196 (596)
Q Consensus       121 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~-  196 (596)
                        +.+.. .+.   |.+.                .|   .+++..+.++..+....+..+.. |.+-++..     |.. 
T Consensus        86 l~~pff~~v~~---pll~----------------~n---~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~s-----r~~~  137 (412)
T PF01306_consen   86 LFGPFFIYVFG---PLLQ----------------SN---FWLGAIIGGIYLGLVFNAGVPLS-EAYAERVS-----RRNG  137 (412)
T ss_dssp             TCHHHHHHTHH---HHHH----------------TT----HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHH-----HHHS
T ss_pred             HHHHHHHHHHH---HHHH----------------HH---HHHHHHHHHHHHHHHHcccchHH-HHHHHHHH-----HHhc
Confidence              22221 121   2100                01   22233333333333333332222 22222111     222 


Q ss_pred             -HHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhc
Q 007612          197 -FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWR  275 (596)
Q Consensus       197 -~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (596)
                       =+|-..+.+.+|.+++..++|.+.+ .+-+..||+..+..++..++.+..++..+++.+..+.                
T Consensus       138 feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~----------------  200 (412)
T PF01306_consen  138 FEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA----------------  200 (412)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT----------------
T ss_pred             CCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc----------------
Confidence             2334566788999999999998876 4567788877655444444433333221111000000                


Q ss_pred             cccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHH-HHH
Q 007612          276 VHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLP-IWL  354 (596)
Q Consensus       276 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  354 (596)
                                                                       .+.++++.+.....++.+.|+.+.+.. +..
T Consensus       201 -------------------------------------------------~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g  231 (412)
T PF01306_consen  201 -------------------------------------------------LGAKKDKVSLKDVLSLFKMRNFWFFVLFVIG  231 (412)
T ss_dssp             -------------------------------------------------SSS------HHHHHHHTTSHHHHHHHHHHHH
T ss_pred             -------------------------------------------------cccCCCCCcHHHHHHHhcchhHHHHHHHHHH
Confidence                                                             000000000000001112233333332 223


Q ss_pred             HhHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHH
Q 007612          355 CTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIG  434 (596)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig  434 (596)
                      ....|.+...|++.++.....  +...+  +...+..+++..+.-.+...+..    ++.+|++        .++.++++
T Consensus       232 ~~~~Y~vfdqqf~~y~~~~f~--~~~~g--~~~~G~l~s~~v~~E~~~m~~~p----~li~rig--------~k~~Llla  295 (412)
T PF01306_consen  232 VAAIYDVFDQQFPIYFASFFQ--SAGQG--NQMYGYLWSVQVFLEALMMFFSP----WLINRIG--------AKNLLLLA  295 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSS--SHHHH--HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--ccccC--hhHHhHHHHHHHHHHHHHHHHHH----HHHHhcC--------hHhHHHHH
Confidence            334555555554433322111  11000  00012222222333333333333    4456665        77778899


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHH-H
Q 007612          435 LVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALC-M  513 (596)
Q Consensus       435 ~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~  513 (596)
                      ..++++-.+..++.                    .+++++.+.-.++++-..+...+..-|+.+.+|++..++...+. +
T Consensus       296 g~i~~iRi~~~~~~--------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~  355 (412)
T PF01306_consen  296 GVIMAIRIIGSGFA--------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQ  355 (412)
T ss_dssp             HHHHHHHHHHHHT----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhh--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence            99999998888764                    36778888889999999999999999999999999999999985 6


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 007612          514 TSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYK  578 (596)
Q Consensus       514 ~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~  578 (596)
                      +..++|..+.+.+.|.+.+                .-+++..|++++.+.++..++.++..++.+
T Consensus       356 ~~~~~~~~i~s~~~G~lyd----------------~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  356 FAKQIGIIILSPLAGYLYD----------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             TTHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHHHHHHhhhHHhhHh----------------hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            7789999999999998776                345677899999998888877777665543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.75  E-value=2.3e-15  Score=163.74  Aligned_cols=380  Identities=14%  Similarity=0.080  Sum_probs=217.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccC-----chHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWG-----RFKTCAIFQG  116 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~G-----r~~~l~~~~~  116 (596)
                      .+.++...++.+.+. +.+...++.++++++|+|+++.+...+...+...+-.+ .|.++||+ +     ||+.++++.+
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence            445566678888888 77888888999999999999999998888888877555 99999997 7     6666777765


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      +.. ......++.. +                   +......+.+++.+++.+....+.-++..|..+ ++.+   .++.
T Consensus       104 l~~-~~~~~~l~~~-~-------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~  158 (468)
T TIGR00788       104 LGS-AILYGLLPGK-V-------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPS  158 (468)
T ss_pred             HHH-HHHHHhcccc-c-------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCC
Confidence            542 1222222200 1                   123334446778899999999999999999998 4411   1344


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhcc
Q 007612          197 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRV  276 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (596)
                      ..++.+...++|..+|+.++|.+.+..+|+..|++.++..++..+...+.+++.....|+.......     .+.     
T Consensus       159 ~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~-----~~~-----  228 (468)
T TIGR00788       159 LVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM-----NMA-----  228 (468)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchh-----hhh-----
Confidence            5566666678999999999999999899999999887666655433333322110011110000000     000     


Q ss_pred             ccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHh
Q 007612          277 HLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCT  356 (596)
Q Consensus       277 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (596)
                                             ..  .  ....+... ...+          .-|      .....+.+...+.+.+..
T Consensus       229 -----------------------~~--~--~~~~~~~~-~~~~----------~l~------~~l~~~~i~~~l~fifl~  264 (468)
T TIGR00788       229 -----------------------LL--T--LGVLANVK-VQIL----------GLR------GAIQLLEIAKPLIFIFLS  264 (468)
T ss_pred             -----------------------hh--h--hhHHHHHH-HHHH----------HHH------HHHhcHHHHHHHHHHHHH
Confidence                                   00  0  00000000 0000          000      000112222211111110


Q ss_pred             HhHhhhhccccceeEeeeccccccccccccCCccc---cccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHH
Q 007612          357 ILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASM---SSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGI  433 (596)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~i  433 (596)
                        +..........+..+..  .  +   +.++...   .....++.++...+.+    ++.+|++        .++.+.+
T Consensus       265 --~~~~~~~~~~~f~~~~~--~--l---G~s~~~~G~~~~~~~v~~i~g~~~~~----~~~~~~~--------~r~~l~~  323 (468)
T TIGR00788       265 --YANLPGASGSVFCATTQ--C--L---PGGPSFSGMSKVVGNLGSLCGVGGYD----RFLKTFP--------YRLLFGV  323 (468)
T ss_pred             --HhhcCCCCceeEEEEcc--c--C---CCCcchhhhHHHHHHHHHHHHHHHHH----HHHhhCC--------HHHHHHH
Confidence              22222222122222111  1  1   2222222   2223333444444444    3344443        6667777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHH
Q 007612          434 GLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCM  513 (596)
Q Consensus       434 g~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~  513 (596)
                      +.++.+++.......... .+.        . ....+.+++....++.+++.++...+...++.+..|++.+|+..|+.+
T Consensus       324 ~~~l~~~~~~~~~~l~~~-~~~--------~-~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~  393 (468)
T TIGR00788       324 TTLLYTLSSLFDLILVKR-WNL--------A-FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLA  393 (468)
T ss_pred             HHHHHHHHHhCceeeeec-ccc--------c-cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHH
Confidence            777777766443211100 000        0 000122344445677888888889888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 007612          514 TSISLGNYVSSLLLTMVMKIS  534 (596)
Q Consensus       514 ~~~~lg~~lg~~l~~~i~~~~  534 (596)
                      ...++|..+++.+.+.+.+..
T Consensus       394 s~~~lg~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       394 SILHLGSSVSGFLGVLLMETI  414 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            999999999998888887654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.74  E-value=2.7e-16  Score=169.41  Aligned_cols=397  Identities=12%  Similarity=0.049  Sum_probs=239.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhh----hccCchHH-HHHHHHHHHHHHHH
Q 007612           50 QGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSD----SYWGRFKT-CAIFQGIFVIGLVL  124 (596)
Q Consensus        50 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laD----r~~Gr~~~-l~~~~~~~~~~~~~  124 (596)
                      .+..+........++..|+++.+|+++..++.+..+..+...+..|+.|+++|    |+ ||||. ++++.+...++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            35555555666678899999999999999999999999999999999999999    76 76665 55677777777666


Q ss_pred             HHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHH
Q 007612          125 LSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLA  204 (596)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  204 (596)
                      +....  |             .+.........+.+..++..++.........++..|..+++++     |.+..++....
T Consensus        89 lf~~~--p-------------~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~  148 (428)
T PF13347_consen   89 LFSPP--P-------------AGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIF  148 (428)
T ss_pred             hhccc--c-------------chhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHH
Confidence            66430  1             0111112234456666667888899999999999999985432     88999998888


Q ss_pred             HhHHHHHHhhhhhhhcccc-------cchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccc
Q 007612          205 LNLGSLFSNTILGYFEDEG-------MWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVH  277 (596)
Q Consensus       205 ~~lg~~~~~~i~g~l~~~~-------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (596)
                      ..+|..+...+.+.+.+..       +|++..++.+++.++..++.....|+.+.+.+.+++                  
T Consensus       149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~------------------  210 (428)
T PF13347_consen  149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK------------------  210 (428)
T ss_pred             HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc------------------
Confidence            8888876666665554321       577777776666555555444443431000000000                  


Q ss_pred             cCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhH
Q 007612          278 LSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTI  357 (596)
Q Consensus       278 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (596)
                                                                         +.+++... ....+.|.....+.......
T Consensus       211 ---------------------------------------------------~~~~~~~~-~~~~~nr~~~~l~~~~~~~~  238 (428)
T PF13347_consen  211 ---------------------------------------------------KISLRDSL-RSLFRNRPFRILLLAFFLQW  238 (428)
T ss_pred             ---------------------------------------------------ccccccch-hhhcccchHHHHHHHHHHHH
Confidence                                                               00000000 00011122222221111111


Q ss_pred             hHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHH
Q 007612          358 LYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVI  437 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l  437 (596)
                      ..+........++.....+.+      . ..+.+.....+..++..++..++.    +|.+        +++.+..+.++
T Consensus       239 ~~~~~~~~~~~y~~~~vl~~~------~-~~~~~~~~~~~~~~v~~~~~~~l~----~r~g--------k~~~~~~~~~~  299 (428)
T PF13347_consen  239 LAFALMNTFLPYYFTYVLGNE------G-LISIFMLIFFVASIVGSPLWGRLS----KRFG--------KKKVYIIGLLL  299 (428)
T ss_pred             hhhhhhhhHHHHHHHHHhcCc------h-hhHHHHHHHHHHHHHHHHHHHHHH----HHcc--------ceeehhhhHHH
Confidence            111111111112221111111      1 122233344555666667776554    4444        22347788888


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCc-------hhHHHHHH
Q 007612          438 AIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPD-------GLKSFGSA  510 (596)
Q Consensus       438 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~-------~~rg~~~g  510 (596)
                      .+++.++..+..                  ..+.++..+..++.|++.+..+...+++..|..+.       +..|...|
T Consensus       300 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s  361 (428)
T PF13347_consen  300 AALGFLLLFFLG------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS  361 (428)
T ss_pred             HHHHHHHHHHHH------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence            888887776642                  13677788888999999999998889999988873       45699999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 007612          511 LCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYK  578 (596)
Q Consensus       511 l~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~  578 (596)
                      +.++...++..+++.+.+.+.+..+-+...    .................+.++..++.+.+..+++
T Consensus       362 ~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~----~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~  425 (428)
T PF13347_consen  362 VNSFFIKIGQGLAGAIVGLLLALVGYDANA----AVQSASALSGIRILFSIVPAIFLLLAIIFMRFYP  425 (428)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhCcCCCc----CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999887765332211    1122334444455555555555555545444443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.73  E-value=1.2e-15  Score=160.27  Aligned_cols=156  Identities=13%  Similarity=0.009  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHhhCCChHH-HHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 007612           60 VGVNLVLFLTRVLQQNNAE-AANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRG  138 (596)
Q Consensus        60 ~~~~l~~yl~~~lg~~~~~-~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (596)
                      ..++..+|+.+++|++..+ .+.+.+.+..++.++.+++|+++||+ |-|+++.++.+..++..++++++.         
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~---------  113 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT---------  113 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH---------
Confidence            3456677899999999999 99999999999999999999999997 999999999999999999999883         


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhh
Q 007612          139 CGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGY  218 (596)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~  218 (596)
                                    +...+.+.|++.|++.|... +...++..++|+++      |+++.++.+.+..+|.+++++++++
T Consensus       114 --------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~ql  172 (511)
T TIGR00806       114 --------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQL  172 (511)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          37789999999999999999 99999999999999      9999999999999999999999998


Q ss_pred             hcccccchHHHH---HHHHHHHHHHHHHHhcC
Q 007612          219 FEDEGMWALGFW---VSTGSAFAALVLFLAGT  247 (596)
Q Consensus       219 l~~~~~~~~~f~---~~~~~~~~~~~~~~~~~  247 (596)
                      + ..+||++-+.   +......+++++.++++
T Consensus       173 l-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       173 L-VTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             H-HhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4 4578886543   44455556666655554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.72  E-value=1.2e-15  Score=152.04  Aligned_cols=416  Identities=12%  Similarity=0.051  Sum_probs=238.2

Q ss_pred             HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccC
Q 007612           57 FFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRP  136 (596)
Q Consensus        57 ~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  136 (596)
                      .......+.+-+....|.+.-+...+......+..+++...|.++|++ |||+.+.+..+...+..++-+.+   |+   
T Consensus        93 ~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s---pn---  165 (528)
T KOG0253|consen   93 EMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS---PN---  165 (528)
T ss_pred             HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC---CC---
Confidence            344455555566677788888899999999999999999999999997 99999888766655555554444   44   


Q ss_pred             CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhh
Q 007612          137 RGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTIL  216 (596)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~  216 (596)
                                       +..+.+.|.+.|+|.|+ .|...++..|..|...      |....-+. ....+|.++...+.
T Consensus       166 -----------------f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~la  220 (528)
T KOG0253|consen  166 -----------------FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLA  220 (528)
T ss_pred             -----------------eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHH
Confidence                             78899999999999999 7999999999999887      77776666 67788998888776


Q ss_pred             hhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCC
Q 007612          217 GYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTN  296 (596)
Q Consensus       217 g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~  296 (596)
                      =.+....||||-.........+.....++.....+..-.++++.+ ....+....+..+.++|......+..++.++...
T Consensus       221 w~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k-AletL~kiArmNg~qlplgvl~~s~~~~~e~e~~  299 (528)
T KOG0253|consen  221 WGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK-ALETLHKIARMNGKQLPLGVLESSAIDRQEQEES  299 (528)
T ss_pred             HHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH-HHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhh
Confidence            666677899987766554333333333333322222222333332 2234455566666778877666666655554333


Q ss_pred             CCCccccccccchhhhhhhhccccccccccCCCCCCcccCccch-hhhhhhhhhHHHHH-HhHhHhhhhccccceeEe--
Q 007612          297 GNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQV-EEVKCILRLLPIWL-CTILYSVVFTQMASLFVE--  372 (596)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--  372 (596)
                      ++.+......            +          .+-........ .-+|+.+..+.+++ ....|+.........+..  
T Consensus       300 ~~~~~~~~a~------------k----------e~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd  357 (528)
T KOG0253|consen  300 DLDDSKSSAA------------K----------EVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGD  357 (528)
T ss_pred             chhhhhhccc------------c----------ccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC
Confidence            3322211110            1          01000000111 12233332222222 122222211110000000  


Q ss_pred             --------eeccccccccccccC--Cccccc----cchh-hHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHH
Q 007612          373 --------QGAAMKTTVSNFRIP--PASMSS----FDIL-SVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVI  437 (596)
Q Consensus       373 --------~~~~~~~~~~~~~~~--~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l  437 (596)
                              .....+... +...+  ......    ...+ +.++.+.+    ++++.||.            .|...+++
T Consensus       358 ~c~~~~r~~p~e~e~~~-~c~~s~~~dYrdllitslaefPGlLIt~~i----verlGRKk------------TMal~l~~  420 (528)
T KOG0253|consen  358 ACPLYNRFLPTELETRA-NCPLSVAKDYRDLLITSLAEFPGLLITGVI----VERLGRKK------------TMALSLIL  420 (528)
T ss_pred             ccccchhcchhHHHhhh-cCCccchhHHHHHHHHHHhhCCchhHHHHH----HHHhcchh------------HHHHHHHH
Confidence                    000001000 00000  000100    0011 12222223    33333332            37777777


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007612          438 AIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSIS  517 (596)
Q Consensus       438 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~  517 (596)
                      +++..+......                    .........+..-+.....+.+.|.|.-|.+|...|+++.|.+..++.
T Consensus       421 f~iflfll~~c~--------------------~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaR  480 (528)
T KOG0253|consen  421 FGIFLFLLTTCK--------------------TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMAR  480 (528)
T ss_pred             HHHHHHHHHHhc--------------------CcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHh
Confidence            666655443321                    111122222333344455677888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 007612          518 LGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIEL  582 (596)
Q Consensus       518 lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~~~  582 (596)
                      +|+++.|++.. ....+                 ....-.+.++.++++.+...++-.|+|+|..
T Consensus       481 IggI~~p~iA~-~~e~s-----------------~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  481 IGGIFSPVIAM-RAELS-----------------TSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             hhhhhhhHHHH-Hhccc-----------------eeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            99999998883 22111                 0113456678888888888888888887754

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.71  E-value=9.1e-15  Score=148.82  Aligned_cols=150  Identities=15%  Similarity=0.109  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007612           44 IIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLV  123 (596)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~  123 (596)
                      .++....+...+..- ....+.+.+++.++++..|++++...+..++.+++++.|++.+|+ |+|+.+++++.+++++..
T Consensus        16 v~~t~lFfl~G~~~~-l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          16 VLLTSLFFLWGFITC-LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHhh-cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            333333344433333 345566778899999999999999999999999999999999997 999999999999999998


Q ss_pred             HHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHH
Q 007612          124 LLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYL  203 (596)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  203 (596)
                      ++.-++.                    ..++..++++.++.+.|.+....+.+++++...|++.      ...-+++.+.
T Consensus        94 lF~pAa~--------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~  147 (422)
T COG0738          94 LFWPAAS--------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQA  147 (422)
T ss_pred             HHhhhhh--------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHH
Confidence            8875522                    2458899999999999999999999999999999876      4555777888


Q ss_pred             HHhHHHHHHhhhhhhhcc
Q 007612          204 ALNLGSLFSNTILGYFED  221 (596)
Q Consensus       204 ~~~lg~~~~~~i~g~l~~  221 (596)
                      ...+|+.++|++++++..
T Consensus       148 fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         148 FNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            889999999999998776

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.70  E-value=9.4e-15  Score=157.51  Aligned_cols=150  Identities=11%  Similarity=0.071  Sum_probs=123.7

Q ss_pred             HhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCC
Q 007612           70 RVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTH  149 (596)
Q Consensus        70 ~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (596)
                      +++++...+.+++.+++.++++++.+++|.+.||+ .-.+.+....+...+..++....                     
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~---------------------  131 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV---------------------  131 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            56778888999999999999999999999999997 86666666655554444444434                     


Q ss_pred             CchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhh------cccc
Q 007612          150 SSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYF------EDEG  223 (596)
Q Consensus       150 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l------~~~~  223 (596)
                        ++.+.+++.|++.|+..++..|....+++.+|.+++      |+.-+++++....+|.++|.+++..+      ....
T Consensus       132 --~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~  203 (495)
T KOG2533|consen  132 --HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA  203 (495)
T ss_pred             --hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence              458889999999999999999999999999999999      99999999999999999999988775      2357


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCcc
Q 007612          224 MWALGFWVSTGSAFAALVLFLAGTTR  249 (596)
Q Consensus       224 ~~~~~f~~~~~~~~~~~~~~~~~~~~  249 (596)
                      ||||.|++.+++.++..++.++..|.
T Consensus       204 gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  204 GWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             CceeehhHHHHHHHHHHheEEEEecC
Confidence            89999999987766665555554443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.69  E-value=1.2e-15  Score=165.86  Aligned_cols=424  Identities=14%  Similarity=0.087  Sum_probs=251.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVN---LVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      -|+++++.+..+...+++..-   +-..+.++++.+..+.+|+.++......+..|+.+.+.||+ |.|++.++|.++..
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence            366666676676666665533   23456788999999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHH-HHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSI-YFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      +|.++..++++                       .+.+++.. ++.|+|.|+........+..+|+ ++      |+.+.
T Consensus       123 ~g~~lssF~~~-----------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kk------R~lA~  172 (509)
T KOG2504|consen  123 LGLLLSSFATS-----------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KK------RALAT  172 (509)
T ss_pred             HHHHHHHHHhh-----------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HH------HHHHH
Confidence            99999999832                       65555555 56789999998888888887775 44      88999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhcccc
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHL  278 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (596)
                      ++-..+..+|..+=|.+..++.+.+|||+.+++...+.+-.+......++.....++.+  ..+..+             
T Consensus       173 Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~--~~~~~~-------------  237 (509)
T KOG2504|consen  173 GIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNE--EKDLRN-------------  237 (509)
T ss_pred             hhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchh--hhhhcc-------------
Confidence            99888999999999999999999999999999877766555555555554332222220  000000             


Q ss_pred             CCCcccchhcccCCCCCCC-CCccccccccchhhhhhhhccccccccccCCCCCCccc-C--c-cchhhhhhhhhhHHHH
Q 007612          279 SAEGEDLYVIDANDSSTNG-NRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLC-P--V-TQVEEVKCILRLLPIW  353 (596)
Q Consensus       279 p~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~~~  353 (596)
                      +..   ..+....+..... .++....+ ....+........     .+....+-+.. .  + ..++++..+...+...
T Consensus       238 ~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~  308 (509)
T KOG2504|consen  238 SAA---SVESTPKPVELRISERDSGLKK-LSLSNLATLKRGP-----DKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNL  308 (509)
T ss_pred             ccc---cccccccccccccccCCCCCCc-ccccchhhhhhCC-----ccccccchhhhhhhhhHHHHcCchHHHHHHHHH
Confidence            000   0000000000000 00000000 0000000000000     00000010000 0  0 1111111111112222


Q ss_pred             HHhHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHH
Q 007612          354 LCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGI  433 (596)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~i  433 (596)
                      +....+...+..++.+...  ...+..      ..+...++.++..++.-++.+.+.++-.          ........+
T Consensus       309 ~~~~g~~~p~~~l~~~~~~--~g~~~~------~aa~l~Siigi~~i~gRi~~G~laD~~~----------~~~~~~~~~  370 (509)
T KOG2504|consen  309 FAYLGFNVPFVYLPSYAKS--LGLSSN------DAAFLLSIIGVSDIIGRIILGLLADKPG----------IRALVLFLL  370 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhh--cCCChh------hhHHHHHHHHHhhhhhhhhhhhhcCccc----------cchHHHHHH
Confidence            2223333332222221111  111111      1222223333334444444443322211          114455667


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHH
Q 007612          434 GLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCM  513 (596)
Q Consensus       434 g~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~  513 (596)
                      ++++.+++.+.....                    .+.+.++...+++|+..+.........+.+..+.+.-..+.|+..
T Consensus       371 ~ll~~gl~~~~~p~~--------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l  430 (509)
T KOG2504|consen  371 TLLIAGLARLFLPFA--------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLL  430 (509)
T ss_pred             HHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHH
Confidence            777777776555543                    245667777788899888888777789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhc
Q 007612          514 TSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACA  574 (596)
Q Consensus       514 ~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~  574 (596)
                      +++.++..+||.+.+.+.+.+               ++|+..|++.++..+++.+.+++..
T Consensus       431 ~~~gi~~l~gpPiag~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  431 LFQGIGALVGPPIAGLLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHhHHHHHcCcccceeeeecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence            999999999999999554422               3356678877777777776666655

>PTZ00207 hypothetical protein; Provisional

Probab=99.69  E-value=3e-13  Score=148.55  Aligned_cols=172  Identities=12%  Similarity=0.106  Sum_probs=126.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      ++|..+...++.+.+. ...|++.. ....+++++|+|..+.+++.+... ...++.+++|+++||+ |+|++++++.++
T Consensus        25 ~Rw~~lva~~~~~~~~-g~~y~fsv-~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll  100 (591)
T PTZ00207         25 RRFALLVLGAFCSICT-SFMYAFNL-ISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTV  100 (591)
T ss_pred             chHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            4444444444444433 33455544 344678999999999999887743 3446777899999997 999999999999


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      +.++.++++++.. ..+                ..+.+.+++.|++.|+|.+...+.+...+.++|| ++      |+++
T Consensus       101 ~~iG~ll~ala~~-~~i----------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a  156 (591)
T PTZ00207        101 FCLGTLLFALTFQ-EVI----------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAV  156 (591)
T ss_pred             HHHHHHHHHHHhc-ccc----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHH
Confidence            9999999888622 000                1348889999999999999888888999999997 56      9999


Q ss_pred             HHHHHHHHhHHHHH-HhhhhhhhcccccchHHHHHHHHHHHHH
Q 007612          198 FSYFYLALNLGSLF-SNTILGYFEDEGMWALGFWVSTGSAFAA  239 (596)
Q Consensus       198 ~~~~~~~~~lg~~~-~~~i~g~l~~~~~~~~~f~~~~~~~~~~  239 (596)
                      .++.....++|+.+ +++..+++.  .+|+..|++.++..++.
T Consensus       157 ~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        157 VAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVV  197 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence            99999999999975 555555554  35777777665544433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=9.3e-16  Score=154.86  Aligned_cols=147  Identities=12%  Similarity=0.062  Sum_probs=132.8

Q ss_pred             hhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCC
Q 007612           71 VLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHS  150 (596)
Q Consensus        71 ~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (596)
                      .++-++.+.|++.+...+.+.+..++.|.+.||+ |+|-.+++|..++..+.+++++..                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            4566778899999999999999999999999996 999999999999999999999983                     


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHH
Q 007612          151 SLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFW  230 (596)
Q Consensus       151 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~  230 (596)
                        ++..++++|.++|+|.++...+..++++|.||++.+     |++++|+.-....+|-.+||.++|.+.+..|++.+|.
T Consensus       158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFl  230 (464)
T KOG3764|consen  158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFL  230 (464)
T ss_pred             --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHH
Confidence              377899999999999999999999999999998874     8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 007612          231 VSTGSAFAALVLFLAG  246 (596)
Q Consensus       231 ~~~~~~~~~~~~~~~~  246 (596)
                      +.++.+++-..+-++.
T Consensus       231 VL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  231 VLAIVLLLDGALQLLV  246 (464)
T ss_pred             HHHHHHHHHHHHHHhe
Confidence            9987777666554443

>PRK11462 putative transporter; Provisional

Probab=99.68  E-value=7e-14  Score=151.91  Aligned_cols=152  Identities=13%  Similarity=0.122  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhc---cCchHH-HHHHHHHHHHHH
Q 007612           47 LLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSY---WGRFKT-CAIFQGIFVIGL  122 (596)
Q Consensus        47 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Gr~~~-l~~~~~~~~~~~  122 (596)
                      .+..+..+..+..+..++..|+++.+|+++..+|.+..+.-+.-.+.-|+.|+++||.   +||||. ++++.+.++++.
T Consensus        15 g~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~   94 (460)
T PRK11462         15 GMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC   94 (460)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence            3455566677777778899999999999999999999999999999999999999972   377655 556667777776


Q ss_pred             HHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHH
Q 007612          123 VLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFY  202 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  202 (596)
                      +++...   |..              ........+++.-.+..++..+......++.+++.+..++     |.+..++..
T Consensus        95 ~llf~~---p~~--------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s~r~  152 (460)
T PRK11462         95 VLAYST---PDL--------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQSWRF  152 (460)
T ss_pred             HHHHhC---CCC--------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHHHHH
Confidence            666544   220              0112234455555566788888888889999999875432     999999999


Q ss_pred             HHHhHHHHHHhhhhhhhc
Q 007612          203 LALNLGSLFSNTILGYFE  220 (596)
Q Consensus       203 ~~~~lg~~~~~~i~g~l~  220 (596)
                      .+.++|..+++.+...+.
T Consensus       153 ~~~~iG~~~~~~~~~plv  170 (460)
T PRK11462        153 VLATAGGMLSTVLMMPLV  170 (460)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999998888876654443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.67  E-value=7e-14  Score=140.35  Aligned_cols=368  Identities=15%  Similarity=0.163  Sum_probs=243.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007612           46 ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLL  125 (596)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~  125 (596)
                      +.++.+--+...-++.+.+ .-+++++|+|.+.+|.+++...++..+.++++.+++.|+ |.++.+..++++..+|..+=
T Consensus        17 Ivlia~NLR~~itsvgPLL-~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR   94 (395)
T COG2807          17 IVLIAFNLRPAITSVGPLL-DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIR   94 (395)
T ss_pred             HHHHHhccchhhhhhhhhH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHH
Confidence            3333344444444454433 457889999999999999999999999999999999997 99999999999888888765


Q ss_pred             HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHH
Q 007612          126 SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLAL  205 (596)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  205 (596)
                      ...                        +...++.+-.+.|.|.+..+...++++.+.||++.       +..+++|....
T Consensus        95 ~~~------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mtglYs~sl  143 (395)
T COG2807          95 SLG------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMTGLYSTSL  143 (395)
T ss_pred             hcc------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHHhHHHHHH
Confidence            543                        25668888899999999999999999999998764       68899999999


Q ss_pred             hHHHHHHhhhhhhhcccc-cchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCccc
Q 007612          206 NLGSLFSNTILGYFEDEG-MWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGED  284 (596)
Q Consensus       206 ~lg~~~~~~i~g~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  284 (596)
                      ++|+.+++.+.-.+.++. +|+....+-+...++++++.+--..|.+  .+..+.                         
T Consensus       144 ~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~-------------------------  196 (395)
T COG2807         144 GAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ--AASIAT-------------------------  196 (395)
T ss_pred             HHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc--cccccc-------------------------
Confidence            999999998888888776 7999888877776666654432211111  000000                         


Q ss_pred             chhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhc
Q 007612          285 LYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFT  364 (596)
Q Consensus       285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (596)
                                                             ..+....-|+        +...+...+-.-..+..+++.+.
T Consensus       197 ---------------------------------------~~~~~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~  229 (395)
T COG2807         197 ---------------------------------------KLVSVRKVWR--------SPLAWQVTLFMGLQSLLYYIVIG  229 (395)
T ss_pred             ---------------------------------------cccccccccc--------CchhHHHHHHHHhhHHHHHHHHH
Confidence                                                   0000011121        22233333334456778888889


Q ss_pred             cccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 007612          365 QMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLA  444 (596)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~  444 (596)
                      +++.++.++..  +..      ..+.+-.+.....+..+.+...+..    |..|       .+........++.+++.-
T Consensus       230 WLP~ili~~G~--sa~------~aG~llsl~~l~~~~~~ll~P~la~----R~~n-------~r~~~~~~~~~~l~G~~G  290 (395)
T COG2807         230 WLPAILIDRGL--SAA------EAGSLLSLMQLAQLPTALLIPLLAR----RSKN-------QRPLVVLALLLMLVGLVG  290 (395)
T ss_pred             HHHHHHHHcCC--CHH------HhhhHHHHHHHHHHHHHHHHHHHHH----Hhcc-------cchHHHHHHHHHHHHHHH
Confidence            99888776432  222      1233333333333333333333322    2221       223344455555555544


Q ss_pred             HHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHH
Q 007612          445 AGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPD-GLKSFGSALCMTSISLGNYVS  523 (596)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~-~~rg~~~gl~~~~~~lg~~lg  523 (596)
                      +.+...                 +..++|    .+++|+|.+..+|...+++...+++ +..+.-+|+.+..+.+-..+|
T Consensus       291 ~~~~P~-----------------~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~G  349 (395)
T COG2807         291 LLLAPG-----------------QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFG  349 (395)
T ss_pred             HHHhhh-----------------hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhh
Confidence            443211                 122333    4889999999999999999888774 566777888888889999999


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcc
Q 007612          524 SLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAK  575 (596)
Q Consensus       524 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~  575 (596)
                      |.++|.+.|.+               ++++..+..++...++..++-+...|
T Consensus       350 P~l~G~lhDa~---------------gsw~~~~~~l~~~~i~m~i~Gl~a~r  386 (395)
T COG2807         350 PWLFGFLHDAT---------------GSWSAPLVLLALATLLMLIFGLRAGR  386 (395)
T ss_pred             hhhHhHHHHhc---------------CChHHHHHHHHHHHHHHHHHHhhcch
Confidence            99999887754               33345666666666666555554443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.64  E-value=3.9e-13  Score=141.99  Aligned_cols=367  Identities=14%  Similarity=0.067  Sum_probs=227.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhc---cCchH-HHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSY---WGRFK-TCAIFQG  116 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Gr~~-~l~~~~~  116 (596)
                      |.-+.-....+..+..+-.+..++..|.++..|+++..+|.+..+.-+.-++.-|+.|.++||.   +||+| -++.+.+
T Consensus        12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i   91 (467)
T COG2211          12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI   91 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence            3344555667777778888889999999999999999999999999999999999999999983   26554 5666777


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      .+++..+++..+   |..             . ........++.-.+.+++.........++..++.+..++     |.+
T Consensus        92 p~~i~~~l~F~~---p~~-------------~-~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R~~  149 (467)
T COG2211          92 PFAIVAVLLFIT---PDF-------------S-MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----RAS  149 (467)
T ss_pred             HHHHHHHHHHcC---CCc-------------c-cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----HHH
Confidence            888888877766   210             0 012344455556678899999999999999999875443     999


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhcc-------cccchHHHHHHHHHHHHHHHHHHhcCc-ceeccCCCCChhHHHHHHHH
Q 007612          197 FFSYFYLALNLGSLFSNTILGYFED-------EGMWALGFWVSTGSAFAALVLFLAGTT-RYRHFKPSGNPLARFCQVIV  268 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i~g~l~~-------~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  268 (596)
                      ..++-....++|..+...+.+.+..       ..||+..-++..++..+.+++.+...+ |..+..+.++.         
T Consensus       150 l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~---------  220 (467)
T COG2211         150 LTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG---------  220 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccc---------
Confidence            9999999999997776655554432       235666555555444444433333222 22111111000         


Q ss_pred             HHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhh
Q 007612          269 AATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILR  348 (596)
Q Consensus       269 ~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (596)
                                                          ....+.+.-                        ....+.|.++.
T Consensus       221 ------------------------------------~~~~~~~~~------------------------~~~~~Nrp~~~  240 (467)
T COG2211         221 ------------------------------------VKLKLKDSF------------------------LLIFKNRPLLL  240 (467)
T ss_pred             ------------------------------------ccccHHHHH------------------------HHHHccchHHH
Confidence                                                000000000                        00112233332


Q ss_pred             hHHHHHHhHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChH
Q 007612          349 LLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTEL  428 (596)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~  428 (596)
                      .+...+...+..........+|+....+.++.      .+...........++..++..    ++.+|++        ++
T Consensus       241 ~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l------~~~~~~~~~~~~~l~~~~~~p----~L~~~~g--------kk  302 (467)
T COG2211         241 LLLMNLLLFIAFNIRGSIMVYYVTYVLGDPEL------FAYLLLLASGAGLLIGLILWP----RLVKKFG--------KK  302 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeEEEEcCChHH------HHHHHHHHHHHHHHHHHHhHH----HHHHHhc--------hH
Confidence            22222222222222222223444433222221      111111112222222233443    3344554        45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCC-------
Q 007612          429 QRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAP-------  501 (596)
Q Consensus       429 ~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P-------  501 (596)
                      +...+|.++.+++.+...+..                  ..+.+.+++..++.+++.+...+..++++.|...       
T Consensus       303 ~~~~~~~~~~~i~~~~~~f~~------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG  364 (467)
T COG2211         303 KLFLIGLLLLAVGYLLLYFTP------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTG  364 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhC
Confidence            568888888888887777642                  2355666667788899999999999998888743       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007612          502 DGLKSFGSALCMTSISLGNYVSSLLLTMVMKIS  534 (596)
Q Consensus       502 ~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~  534 (596)
                      .+..|...|...+++-+|.+++..+.+.+....
T Consensus       365 ~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         365 VRREGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            456788999999999999999999999888765

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.63  E-value=7e-15  Score=161.27  Aligned_cols=179  Identities=10%  Similarity=0.055  Sum_probs=129.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF  118 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~  118 (596)
                      +++.....+...++....+|++..++|.|+++.+|++..+.+...+...++..++.+++|+++||+ |||+.++++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            445555455555667788999999999999988999998888888888888999999999999997 9999988877654


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .++.+.+.....                    ..+...+++++++.+++.+...+....++.+.+|++.      |+++.
T Consensus       327 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~  380 (490)
T PRK10642        327 FVLAIPAFILIN--------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSAL  380 (490)
T ss_pred             HHHHHHHHHHHh--------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHH
Confidence            443332222101                    0125566778888887777666777888889999999      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcccc-cchHHHHHHHHHHHHHHHHHH
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEG-MWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~-~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      ++.+....+++.++|.+.+++.+.. +|+.++++..+..++.++..+
T Consensus       381 g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~  427 (490)
T PRK10642        381 AAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV  427 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            9854546667788999999887654 466666554444444444333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.55  E-value=1.2e-11  Score=133.89  Aligned_cols=92  Identities=14%  Similarity=0.077  Sum_probs=74.8

Q ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC
Q 007612          470 SIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNK  549 (596)
Q Consensus       470 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~  549 (596)
                      +.+.+.+.-++.|+..+...+..-++..++.|++..+...|++.+.....+++||++.+.+.+.++              
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--------------  444 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--------------  444 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------
Confidence            334445555788999999999999999999999999999999999999999999999999887552              


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhccc
Q 007612          550 GHLDRFYFLLAGLTTVDFVVYIACAKW  576 (596)
Q Consensus       550 ~~~~~~f~~~a~i~~i~~~~~~~~~~~  576 (596)
                       +.+..++.+.++.++++++.+.+..+
T Consensus       445 -~~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  445 -SQRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             -CchhHHHHHHHHHHHHHHHHhhccch
Confidence             23456777788888887777555443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.52  E-value=2.9e-11  Score=124.59  Aligned_cols=378  Identities=13%  Similarity=0.038  Sum_probs=222.8

Q ss_pred             HHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccC-----chH-HHHHHHHHHHHHHHHHHhhhccccccCCCCCC
Q 007612           68 LTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWG-----RFK-TCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGN  141 (596)
Q Consensus        68 l~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~G-----r~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (596)
                      +..+++++..-.+..++...+... ..+..|+.||+. +     ||. -+..+.+++..+..++.++...-.       .
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~-------~   76 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA-------E   76 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc-------c
Confidence            456889998888888888877665 578899999996 6     444 456677777777766665422111       0


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcc
Q 007612          142 ELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFED  221 (596)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~  221 (596)
                      +....+.+.........+.-.+.|+|.+...++..++++|..|+++      |++..++.+...-+|.+++.++.|.+.+
T Consensus        77 ~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~  150 (403)
T PF03209_consen   77 SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLD  150 (403)
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            0000001111122344445556888888999999999999999999      9999999988889999999999998887


Q ss_pred             cccchHHHHHH----HHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCC
Q 007612          222 EGMWALGFWVS----TGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNG  297 (596)
Q Consensus       222 ~~~~~~~f~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~  297 (596)
                      .++..-..-+.    .+..++.++..+-..++.++..+..                                        
T Consensus       151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~----------------------------------------  190 (403)
T PF03209_consen  151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAA----------------------------------------  190 (403)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCC----------------------------------------
Confidence            76533222221    1222222222222222221111000                                        


Q ss_pred             CCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhh-HHHHHHhHhHhhhhccccceeEeeecc
Q 007612          298 NRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRL-LPIWLCTILYSVVFTQMASLFVEQGAA  376 (596)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (596)
                           ..+..++.+....                        +...++..++ ..++.....++.....+-++       
T Consensus       191 -----~~~~~~f~~a~~~------------------------~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPy-------  234 (403)
T PF03209_consen  191 -----ERPRPPFREAWRQ------------------------VWASPQARRFFVFLFLGTLAFFMQDVILEPY-------  234 (403)
T ss_pred             -----CCCCccHHHHHHH------------------------HHhCCChhHHHHHHHHHHHHHHhhHHHcCCc-------
Confidence                 0000011111000                        0001111111 22233334444333222111       


Q ss_pred             cccccccccc-CCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007612          377 MKTTVSNFRI-PPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKY  455 (596)
Q Consensus       377 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~  455 (596)
                       .-++.|++. .+..++.+...+.++...+.+++..|   |.+        +.+...+|..+.++++.......      
T Consensus       235 -gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~---~~~--------~~~~a~~G~~~~~~~f~lii~a~------  296 (403)
T PF03209_consen  235 -GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR---RLG--------KKRTAALGCLLGALAFALIILAG------  296 (403)
T ss_pred             -hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCC--------chHHHHHHHHHHHHHHHHHHHHH------
Confidence             111111211 23445666677777777777765443   322        33445567777777766554432      


Q ss_pred             hcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007612          456 AKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKIST  535 (596)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~  535 (596)
                                 ...+.+.+.+..+++|++.++......+.+.+..+++..|..+|.+...+.++..++.++.+.+.|...
T Consensus       297 -----------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~  365 (403)
T PF03209_consen  297 -----------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR  365 (403)
T ss_pred             -----------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       112466677888999999999999999999999999999999999999999999999999988776542


Q ss_pred             cCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 007612          536 EDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYI  571 (596)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~  571 (596)
                            +..++....+|..+|..=++..++++++..
T Consensus       366 ------~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  366 ------ALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             ------HhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence                  221111234566677666666666555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.49  E-value=3.5e-13  Score=138.03  Aligned_cols=180  Identities=22%  Similarity=0.190  Sum_probs=149.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhcc-CchHHH-HHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYW-GRFKTC-AIFQGIF  118 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~-Gr~~~l-~~~~~~~  118 (596)
                      |.+|.+++..++.-+.-|++..|.|.|+.+..|+|..++++..+.+-.+...++++.|++|||++ |||... +++++..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999976 666544 4455555


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .++.+...++   |+                  .+..+..+..+..|+..-+.+-.+.....|..|++-      -|++.
T Consensus       332 ~~~~~~~w~~---~~------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~  384 (448)
T COG2271         332 TASLVLYWLA---PN------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTAT  384 (448)
T ss_pred             HHHHHHHHcC---CC------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchh
Confidence            6666666655   33                  346777788888888887777777788889998887      78899


Q ss_pred             HHHHHHHhH-HHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcC
Q 007612          199 SYFYLALNL-GSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       199 ~~~~~~~~l-g~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  247 (596)
                      |+......+ |..++....|++.|.+||...|.+..+..+++.+++....
T Consensus       385 Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         385 GFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             chhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            998888877 9999999999999999999999887766666655544433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.49  E-value=2.7e-13  Score=143.50  Aligned_cols=195  Identities=18%  Similarity=0.165  Sum_probs=148.2

Q ss_pred             CccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCc-
Q 007612           30 RPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTR-VLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGR-  107 (596)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr-  107 (596)
                      +...+..+.+||.+++..+..++....++.+.+..-+|+++ +.+.+.+..|++++...++..++++..|+.+.|. |+ 
T Consensus        23 ~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~  101 (488)
T KOG2325|consen   23 LSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSV  101 (488)
T ss_pred             cccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCc
Confidence            34556667899999999999999999888888878889864 4777888899999999999999999999999996 75 


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccc
Q 007612          108 FKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEED  187 (596)
Q Consensus       108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  187 (596)
                      |+.++.+.++.++|.++.......|+                  ...++++++|++.|+|.|.. ...-+++++....++
T Consensus       102 k~Pli~s~ii~~~g~llY~~l~~~~~------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d  162 (488)
T KOG2325|consen  102 KKPLIVSFLIAIIGNLLYLALAYVPN------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED  162 (488)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhccc------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc
Confidence            78888899999999888744323233                  25788999999999997764 677788888877778


Q ss_pred             cccccchhhHHHHHHHHHhHHHHHHhhhhhhhc----cc---------ccchHHHHHHHHHHHHHHHHHHhcCcce
Q 007612          188 AKEGHSKVAFFSYFYLALNLGSLFSNTILGYFE----DE---------GMWALGFWVSTGSAFAALVLFLAGTTRY  250 (596)
Q Consensus       188 ~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~----~~---------~~~~~~f~~~~~~~~~~~~~~~~~~~~~  250 (596)
                            |.++++....+..+|..+||.+...+.    ..         ..|..+-|+.+++.++.++++....++.
T Consensus       163 ------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  163 ------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             ------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence                  888888877766677777766544332    11         1245566666666666666555555543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.48  E-value=1.9e-12  Score=137.96  Aligned_cols=174  Identities=11%  Similarity=0.037  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +..+..+.........++....++|.|+++++|+++.+.+.+.+...++..++.++.|+++||+ |||+.+..+.+...+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~  294 (393)
T PRK15011        216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVC  294 (393)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            3334444444444455556667899999999999999999988887788888999999999997 999988777655544


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      ....+.+.                       ++...+++.+++.+++.|...+....+..|.+| ++      |+++.++
T Consensus       295 ~~~~~~~~-----------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~------~g~~~~~  344 (393)
T PRK15011        295 FYAGMLMA-----------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQ------AGSATTL  344 (393)
T ss_pred             HHHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CC------cchHHHH
Confidence            44333333                       225556667777777777666667777888887 45      7789999


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      ++...++|..++|.++|++.+..+|+..|++..+..+++++..+.
T Consensus       345 ~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        345 YTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            888899999999999999999889999998877766666655543

>PRK09952 shikimate transporter; Provisional

Probab=99.48  E-value=1.5e-12  Score=140.70  Aligned_cols=184  Identities=12%  Similarity=-0.021  Sum_probs=133.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHH
Q 007612           37 SGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG  116 (596)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~  116 (596)
                      +++++.........++....+|.+.++.+.|+++.+|++......+.....+...++.++.|+++||+ ||||++..+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~  324 (438)
T PRK09952        246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGAL  324 (438)
T ss_pred             HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence            34444444445566777788898999999999999999988766666666777788899999999997 99999888766


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      +.+++.+.+.......                   .....+++..++.+++.+...+..++++.|.+|++.      |++
T Consensus       325 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~t  379 (438)
T PRK09952        325 IGTLSAFPFFMALEAQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYS  379 (438)
T ss_pred             HHHHHHHHHHHHHHcC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHH
Confidence            5555443333221000                   123344445566678878878888999999999988      988


Q ss_pred             HHHH-HHHHHhHHHHHHhhhhhhhcccc--cchHHHHHHHHHHHHHHHHHHhc
Q 007612          197 FFSY-FYLALNLGSLFSNTILGYFEDEG--MWALGFWVSTGSAFAALVLFLAG  246 (596)
Q Consensus       197 ~~~~-~~~~~~lg~~~~~~i~g~l~~~~--~~~~~f~~~~~~~~~~~~~~~~~  246 (596)
                      +.++ ++.+..+|+.++|.+.+++.+..  +|..++.+.++..+++.+..+..
T Consensus       380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            9998 55556699999999999997743  48888877766666665555444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.47  E-value=1.3e-12  Score=142.41  Aligned_cols=177  Identities=15%  Similarity=0.067  Sum_probs=134.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.+|..++..++....++++..++|.|+++.+|+|..++++..+...++..++.+++|+++||+ |||+.+.+...+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            5688888888888888889999999999999999999999999999999999999999999997 998877665444443


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +..++.+...                     .+....++.+++.|++.............|.+|++.      |+++.|+
T Consensus       337 ~~~~~~~~~~---------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi  389 (467)
T PRK09556        337 IFTLGVYQHA---------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGI  389 (467)
T ss_pred             HHHHHHHHhc---------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHH
Confidence            3322222200                     124445566666665433333333456679999998      9999999


Q ss_pred             HHHHHhH-HHHHHhhhhhhhcc------------cccchHHHHHHHHHHHHHHHHHHh
Q 007612          201 FYLALNL-GSLFSNTILGYFED------------EGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       201 ~~~~~~l-g~~~~~~i~g~l~~------------~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      .+...++ |+.++|.+.|++.+            ..+|+..|++..+..+++.+..+.
T Consensus       390 ~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        390 KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            9998886 77999999999998            578999998877666666555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.45  E-value=2.1e-12  Score=135.51  Aligned_cols=169  Identities=19%  Similarity=0.133  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      ..+......++..........+.+.|. +++|.++.+.+...+...++..++.++.|+++||+ |||+.+.++.++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  283 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG  283 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence            444455455555555555556666665 56899999999999999999999999999999997 9999999988888887


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      .+++.+.   ++                  .+...++...++.+++.+...+..++++.|.+|+++      |++.++++
T Consensus       284 ~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~  336 (377)
T TIGR00890       284 MAAMLFI---PM------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFL  336 (377)
T ss_pred             HHHHHHc---cc------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHH
Confidence            7766655   11                  113334455677788888888888899999999998      99999999


Q ss_pred             HHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHH
Q 007612          202 YLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAA  239 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~  239 (596)
                      +...++|..++|.+.|++.+..||++.|++.++..+++
T Consensus       337 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       337 YTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            99999999999999999999999999998877655544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.43  E-value=1.3e-12  Score=137.82  Aligned_cols=173  Identities=19%  Similarity=0.090  Sum_probs=133.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHH
Q 007612           37 SGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG  116 (596)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~  116 (596)
                      +++++.++......++....++.+..+++.|+++++|.+..+.+...+...++..++.++.|+++||+ |||+.++++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~  293 (394)
T TIGR00883       215 TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTV  293 (394)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHH
Confidence            34444567777777888888888889999999889999999999999999999999999999999997 99998776554


Q ss_pred             HHHHHH-HHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          117 IFVIGL-VLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       117 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      +..+.. ........  .                  .+...++...++.+++.+...+...+++.|.+|++.      |+
T Consensus       294 ~~~~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~  347 (394)
T TIGR00883       294 LAALLAVPLLMALLD--S------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RY  347 (394)
T ss_pred             HHHHHHHHHHHHHhc--C------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------ee
Confidence            443332 22221100  0                  124556666778888888888999999999999988      88


Q ss_pred             hHHHH-HHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHH
Q 007612          196 AFFSY-FYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSA  236 (596)
Q Consensus       196 ~~~~~-~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~  236 (596)
                      ++.++ ++....+|..++|.++|++.+..| |+..++...+..
T Consensus       348 ~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       348 TGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             eEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            88887 556677899999999999998887 887766655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.43  E-value=6.3e-13  Score=128.26  Aligned_cols=366  Identities=12%  Similarity=0.127  Sum_probs=211.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      .++.+.|+..++..+.| ---.-+..+++.+.+++.++..++.+.+..-..+.+.++|++.||.+|-|..-++-+....+
T Consensus        44 m~lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~  122 (459)
T KOG4686|consen   44 MALVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFL  122 (459)
T ss_pred             HHHHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHH
Confidence            34555555555444433 23344667778888888888899999999999999999999999987877665555555566


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      |.++++.-.-                    .+..+++..+|++.|+|.-....+.+.+...+|..++      .+..+|+
T Consensus       123 GqliFa~Ggi--------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGl  176 (459)
T KOG4686|consen  123 GQLIFAAGGI--------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGL  176 (459)
T ss_pred             HHHHHHhchH--------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhH
Confidence            6665553211                    1458999999999999988888899999999999888      8899999


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCC
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSA  280 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  280 (596)
                      ......+|...-..+.+++.+..+--.+   ...-..+++.+.+-. +.             ....+.-+...       
T Consensus       177 qlSvAR~GstvNf~lm~~ly~~~~~~~~---~~ghT~LG~~l~~~~-~t-------------c~~slical~l-------  232 (459)
T KOG4686|consen  177 QLSVARLGSTVNFLLMPFLYDTMGRMFP---GVGHTLLGLWLCFEV-KT-------------CKQSLICALSL-------  232 (459)
T ss_pred             HHHHHHhhceeeeeecHHHHHHHHHhcc---cchHHHHHHHHHHHH-HH-------------HHHHHHHHHHh-------
Confidence            8888889988777777777664331110   000011111000000 00             00000000000       


Q ss_pred             CcccchhcccCCCCCCCCCccccccccchhhhhh-hhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhH
Q 007612          281 EGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAA-YISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILY  359 (596)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (596)
                                                 .+.|+.+ -+.+++  +...+ ..|    +.+.++..+.  .+..+.+.+++|
T Consensus       233 ---------------------------g~~D~rAerilh~e--~g~~G-e~p----kLtdv~~f~p--pfw~~~iicv~y  276 (459)
T KOG4686|consen  233 ---------------------------GLSDDRAERILHLE--EGFLG-EEP----KLTDVNTFYP--PFWVLVIICVLY  276 (459)
T ss_pred             ---------------------------hhhhhHHHHHHhhh--cCccc-CCc----ccccccccCc--cHHHHHHHHHHH
Confidence                                       0000000 000000  00000 001    0011111111  112233334444


Q ss_pred             hhhhcc---ccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHH
Q 007612          360 SVVFTQ---MASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLV  436 (596)
Q Consensus       360 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~  436 (596)
                      ++...-   ....+.+      ..++-.....+.+.+..-+...+..|+.+.+++++.++.           +.+..+.+
T Consensus       277 yva~fPFi~lg~~fF~------~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~-----------~wv~~a~~  339 (459)
T KOG4686|consen  277 YVAWFPFITLGPMFFQ------KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL-----------WWVASACI  339 (459)
T ss_pred             HHHHHHHhhhhHHHHH------HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee-----------hhHHHHHH
Confidence            443322   1122222      111111222333433334445566677777766655443           34455555


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHH
Q 007612          437 IAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSI  516 (596)
Q Consensus       437 l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~  516 (596)
                      ...++...+.+..                   +++   ...+.++|++..+..-..|-.+....|.++-|++.|..+..+
T Consensus       340 ~tl~~H~~l~Ft~-------------------lsP---y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIq  397 (459)
T KOG4686|consen  340 LTLLGHSGLFFTF-------------------LSP---YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQ  397 (459)
T ss_pred             HHHHHhhhHHhhh-------------------ccH---HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHH
Confidence            5555555444422                   222   346778899988888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 007612          517 SLGNYVSSLLLTMVMK  532 (596)
Q Consensus       517 ~lg~~lg~~l~~~i~~  532 (596)
                      ++|-++.+.+.+++.+
T Consensus       398 NLgla~i~Iiag~i~d  413 (459)
T KOG4686|consen  398 NLGLAFIPIIAGFIAD  413 (459)
T ss_pred             hhhhhHHhhhhheeec
Confidence            9999999999997754

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.42  E-value=5.6e-12  Score=134.35  Aligned_cols=170  Identities=15%  Similarity=0.124  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhc
Q 007612           51 GLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSY  130 (596)
Q Consensus        51 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~  130 (596)
                      .+....++....+++.|+.+ .|.+  +.++..+.+.++..++.++.|+++||+ ||||.+.++..+..++..++.+.  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~--  299 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA--  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh--
Confidence            33455566677788888764 4653  345666778888889999999999997 99999988888777777666654  


Q ss_pred             cccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHH
Q 007612          131 LFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSL  210 (596)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  210 (596)
                       +                    +...+++.+++.|++.+...+.......+.+|++.      |+++.++++...++|..
T Consensus       300 -~--------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~  352 (399)
T PRK05122        300 -P--------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLG  352 (399)
T ss_pred             -c--------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHH
Confidence             2                    25556777888999998888888888889999888      99999999999999999


Q ss_pred             HHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceecc
Q 007612          211 FSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHF  253 (596)
Q Consensus       211 ~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  253 (596)
                      ++|.+.|++.+..||++.|++.++..++++++.+...++.+++
T Consensus       353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (399)
T PRK05122        353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA  395 (399)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            9999999999989999999988877777666666555554443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.41  E-value=2.3e-11  Score=125.66  Aligned_cols=382  Identities=11%  Similarity=0.007  Sum_probs=211.0

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCC
Q 007612           64 LVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNEL  143 (596)
Q Consensus        64 l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (596)
                      +.+|..+.+| +...+-|...++.+.+....+.+-|+.||+ |-|...+++..+-.+|..+=.++.. |.+.        
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~-p~v~--------  135 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSL-PFVP--------  135 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccC-cccc--------
Confidence            3456677778 666778999999999999999999999997 9999999999999999888776632 4321        


Q ss_pred             CCCCCCCchhHH--HHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcc
Q 007612          144 TPCGTHSSLEIC--LFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFED  221 (596)
Q Consensus       144 ~~~~~~~~~~~~--~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~  221 (596)
                              +...  +.+.+..+.+...-.+.....-+..-||++++      |.++..+-.++..+|..+|..+...+..
T Consensus       136 --------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  136 --------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             --------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence                    2233  67777777777777766666677788999999      8888888777766776666655555543


Q ss_pred             c------ccchHH--HHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCC
Q 007612          222 E------GMWALG--FWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDS  293 (596)
Q Consensus       222 ~------~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~  293 (596)
                      +      ..|...  |+...+...+.+.+..+.+++.++.+|.......                               
T Consensus       202 ~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~-------------------------------  250 (480)
T KOG2563|consen  202 SSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL-------------------------------  250 (480)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh-------------------------------
Confidence            3      334432  3322233333333333444433333332111000                               


Q ss_pred             CCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccceeEee
Q 007612          294 STNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQ  373 (596)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (596)
                           .      +.++....                       ....+++..++..+...+....++.....+...    
T Consensus       251 -----~------~~~f~~si-----------------------~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~----  292 (480)
T KOG2563|consen  251 -----Q------DASFPKSI-----------------------KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLA----  292 (480)
T ss_pred             -----h------cCcHHHHH-----------------------HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhc----
Confidence                 0      00000000                       000111121211111111122222222211100    


Q ss_pred             ecccccccccc-ccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHhh
Q 007612          374 GAAMKTTVSNF-RIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVA-MLAAGIVECY  451 (596)
Q Consensus       374 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~-~~~~~~~~~~  451 (596)
                         +...  ++ +...+.+.....+..++.+.+.+.    +.||.+  +     .+..+.+-.....++ +.+..+..  
T Consensus       293 ---l~~s--gY~~~~aG~ig~l~iv~Gmlga~~~gi----i~Dktk--~-----fk~~~~v~~~~~~v~~~~l~~~t~--  354 (480)
T KOG2563|consen  293 ---LCPS--GYEGVFAGYIGALMIVAGMLGALASGI----IADKTK--K-----FKLTTLVLYLFALVGTLMLLTCTL--  354 (480)
T ss_pred             ---cccc--cCCccccchhHHHHHHHHHHHHHHHHh----hhhhhh--h-----HHHHHHHHHHHHHHHHHHHHHhhc--
Confidence               1111  11 111233333334444444444444    445532  0     222333333333333 22222211  


Q ss_pred             hhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007612          452 RLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVM  531 (596)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~  531 (596)
                                     ..-..+++.....++|+......|...++..|..=+..-|+..|+.++.+++=+.+-.++.+...
T Consensus       355 ---------------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~  419 (480)
T KOG2563|consen  355 ---------------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILA  419 (480)
T ss_pred             ---------------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHh
Confidence                           11234455566677888888888999999999988899999999988887776666666666443


Q ss_pred             hhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccchhh
Q 007612          532 KISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEA  584 (596)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~~~~~  584 (596)
                      +....   .+|         ....-+.+...+++.+++.+++.+++++++.|.
T Consensus       420 ~~~~~---~~~---------~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~  460 (480)
T KOG2563|consen  420 EDLGP---PGN---------TFPANIFLTVSALLGAILVAFFRPDYRRLRAEA  460 (480)
T ss_pred             hccCC---CCC---------CccchhHhHHHHHHHHHHHhhhhhhHHhHhhhh
Confidence            31110   011         111224567777777777788888887766654

>PRK03699 putative transporter; Provisional

Probab=99.41  E-value=6.9e-12  Score=133.61  Aligned_cols=171  Identities=11%  Similarity=0.096  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.++...+..++....++++..++|.|+++.+|+|..+++...+.+.++..++.+++|+++||+ |||+.+.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            4556666667777777888899999999999999999999999999999999999999999997 999998877766555


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      ...++...   ++                    ...+.+..++.|++.+...+...+...+..|. .      +++..++
T Consensus       284 ~~~~~~~~---~~--------------------~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~  333 (394)
T PRK03699        284 LMYLFVNT---DD--------------------PSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-A------SPKLVNF  333 (394)
T ss_pred             HHHHHHHc---CC--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C------CHHHHHH
Confidence            54444433   11                    33444556677887777777777777776653 3      4566788


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHH
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVL  242 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~  242 (596)
                      .....++|..++|.+.|++.+..|++..|++..+..+++.+.
T Consensus       334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            788889999999999999999999999998777665555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.41  E-value=1e-11  Score=130.70  Aligned_cols=176  Identities=15%  Similarity=-0.010  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHH-HHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKT-CAIFQGIFV  119 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~-l~~~~~~~~  119 (596)
                      +.++..++..++.....+.+..+++.|+++.+|.+..+.+++.+...++..++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            5677778888888888888999999999999999999999999999999999999999999997 88862 111111111


Q ss_pred             HH---HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          120 IG---LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       120 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      ++   ..+..+...  .                 ..+.........+.+.+.+ ..+...+++.|.+|++.      |++
T Consensus       294 ~~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~  347 (399)
T TIGR00893       294 IAGLVLSLLMFATN--Y-----------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGL  347 (399)
T ss_pred             HHHHHHHHHHHHhc--c-----------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHH
Confidence            11   111111100  0                 0123333333333444444 78999999999999998      999


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHHHHHH
Q 007612          197 FFSYFYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAALVLF  243 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~~~~~  243 (596)
                      ++++.+...++|..++|.+.|++.+..| |+..|++.++..+++.+..
T Consensus       348 ~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888 9999888776666555444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.40  E-value=5.9e-12  Score=135.23  Aligned_cols=178  Identities=15%  Similarity=0.111  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------hHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHH
Q 007612           44 IIILLNQGLATLAFFGVGVNLVLFLTRVLQQN--------NAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQ  115 (596)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~--------~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~  115 (596)
                      +..++..++..........+++.|+.+ .|.+        ....+...+...+...++.++.|+++||+ |||+++.++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~  288 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL  288 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence            334444444444444455677788754 4544        35668888888999999999999999997 9999999999


Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          116 GIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      ++..++..++.....  +                 ..+...+++.+++.|++.+...+....++.|.+|++.      |+
T Consensus       289 ~~~~v~~~l~~~~~~--~-----------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g  343 (418)
T TIGR00889       289 VAWALRFGFFAYGDP--E-----------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RA  343 (418)
T ss_pred             HHHHHHHHHHHHcCc--c-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HH
Confidence            888887666655311  0                 0124566778889999998888999999999999999      99


Q ss_pred             hHHHHHH-HHHhHHHHHHhhhhhhhccc------ccchHHHHHHHHHHHHHHHHHHhcCc
Q 007612          196 AFFSYFY-LALNLGSLFSNTILGYFEDE------GMWALGFWVSTGSAFAALVLFLAGTT  248 (596)
Q Consensus       196 ~~~~~~~-~~~~lg~~~~~~i~g~l~~~------~~~~~~f~~~~~~~~~~~~~~~~~~~  248 (596)
                      +++++.+ ....+|..+||.++|++.+.      +||+.+|.+.++..++..++.++..+
T Consensus       344 ~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       344 SAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999987 57789999999999999876      46999998877665555544444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.39  E-value=9.8e-12  Score=132.76  Aligned_cols=171  Identities=13%  Similarity=-0.004  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGL  122 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~  122 (596)
                      .+......++....++.+..++|.|+.+ .|++..+.+...+...++..++.++.|+++||+ |||+.+.++.+...++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  299 (406)
T PRK11551        222 TLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASL  299 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            3344444455556677778888988865 799999999999999999999999999999997 99999888766655555


Q ss_pred             HHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHH
Q 007612          123 VLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFY  202 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  202 (596)
                      +++.+.   +                    +...+++..++.|++.++..+...++..|.+|++.      |+++.++.+
T Consensus       300 ~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~  350 (406)
T PRK11551        300 AALAAA---P--------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAV  350 (406)
T ss_pred             HHHHhc---C--------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHH
Confidence            544443   1                    24445566667788777778888999999999998      999999999


Q ss_pred             HHHhHHHHHHhhhhhhhcccc-cchHHHHHHHHHHHHHHHHHH
Q 007612          203 LALNLGSLFSNTILGYFEDEG-MWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       203 ~~~~lg~~~~~~i~g~l~~~~-~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      ....+|..++|.++|++.++. +|...++......+++.++.+
T Consensus       351 ~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        351 AVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998764 455555555544444444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.39  E-value=1.6e-11  Score=127.13  Aligned_cols=173  Identities=24%  Similarity=0.305  Sum_probs=149.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchH-HHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFK-TCAIFQGIFV  119 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~-~l~~~~~~~~  119 (596)
                      |.++...+..++..........+.+.++.+.+|.++.+.++..+...++..++.++.|+++||+ |||+ .+.++..+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~  253 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA  253 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence            4445555666677777777888888898887899999999999999999999999999999997 9999 9999988888


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ++.+.+...                       ++....++..++.|++.+...+...+++.|.+|+++      |++.++
T Consensus       254 i~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  304 (352)
T cd06174         254 LGLLLLALA-----------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASG  304 (352)
T ss_pred             HHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHH
Confidence            888877765                       226677888899999999999999999999999988      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHH
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLF  243 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~  243 (596)
                      +.+...++|..++|.+.+.+.+..+|+..|++..+..+++.+..
T Consensus       305 ~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         305 LFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988999999998887766665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.39  E-value=1.6e-11  Score=129.21  Aligned_cols=158  Identities=13%  Similarity=0.083  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007612           56 AFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIR  135 (596)
Q Consensus        56 ~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~  135 (596)
                      .......+++.|+.+++|.++.+.+++.+.......++.+++|+++||+ |||+.+.++.++..+....+...       
T Consensus       214 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~-------  285 (375)
T TIGR00899       214 CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD-------  285 (375)
T ss_pred             HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH-------
Confidence            3444556788899889999999999888887777788889999999997 99999888766555444433333       


Q ss_pred             CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhh
Q 007612          136 PRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTI  215 (596)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i  215 (596)
                                      ++.+.+++.+++.|++.+...+....+..|..|+ +      +++++++++...++|..++|.+
T Consensus       286 ----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~g~~~  342 (375)
T TIGR00899       286 ----------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWIIAGSV  342 (375)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHH
Confidence                            2255566677788888888788888888888875 4      5688999999999999999999


Q ss_pred             hhhhcccccchHHHHHHHHHHHHHHHHHH
Q 007612          216 LGYFEDEGMWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       216 ~g~l~~~~~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      .|++.+..||+..|++.++..+++.++..
T Consensus       343 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       343 GGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            99999988999999988777666655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.39  E-value=5.9e-12  Score=136.71  Aligned_cols=178  Identities=16%  Similarity=0.103  Sum_probs=124.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhcc-CchHHH-HHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYW-GRFKTC-AIFQGI  117 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~-Gr~~~l-~~~~~~  117 (596)
                      .+.+|..++..++.....+++..++|.|++++.|++..++++....+.++..++.+++|+++||+. |||+.. ++...+
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l  331 (452)
T PRK11273        252 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  331 (452)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHH
Confidence            356777788888888888888999999999989999999999988888999999999999999961 334332 222223


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      ..++.+.+.+.   +.                  .+....++..++.|.+..........+..|.+|++.      |+++
T Consensus       332 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~  384 (452)
T PRK11273        332 VTIATIVYWLN---PA------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA  384 (452)
T ss_pred             HHHHHHHHHHh---cc------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhH
Confidence            33333322221   11                  113333344444444433322334456679999988      9999


Q ss_pred             HHHHHHHHhHHHHH-HhhhhhhhcccccchHHHHHHHHHHHHHHHHHH
Q 007612          198 FSYFYLALNLGSLF-SNTILGYFEDEGMWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       198 ~~~~~~~~~lg~~~-~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      +|+.+...++|+.+ +|.+.|++.+..||+..|++..+..+++++...
T Consensus       385 ~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        385 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            99999888888655 799999999999999999887766555544443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.39  E-value=1.1e-11  Score=133.81  Aligned_cols=178  Identities=19%  Similarity=0.086  Sum_probs=123.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccC--chHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWG--RFKTCAIFQGIF  118 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~G--r~~~l~~~~~~~  118 (596)
                      +.+|.+.+..++....++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+  |++......+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence            456777777777777778888999999988899999999999999999999999999999999622  223222221111


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .+....+...   +.                  .+.....+..+..|++............+|.+|++.      |+++.
T Consensus       323 ~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  375 (434)
T PRK11663        323 LLSVGSLWLM---PF------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAAT  375 (434)
T ss_pred             HHHHHHHHHc---cc------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHH
Confidence            1121111111   11                  112222233333443322222233456688888888      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      ++.+...++|..++|.+.|++.+..||+..|++.+++.+++.+..+.
T Consensus       376 g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        376 GFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998887776665554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.37  E-value=3.6e-11  Score=128.14  Aligned_cols=178  Identities=10%  Similarity=0.009  Sum_probs=137.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +..+.+.+..++....++++..++|.|+.+ +|.+..+++...+.+.++..++.++.|+++||+ |||+.++++..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            345666666677778888999999999976 799999999999999999999999999999996 999999888777666


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCC-ccccccccchhhHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYD-EEDAKEGHSKVAFFS  199 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~  199 (596)
                      +..++...   +.                   +...+  ..++.|++.+...|.......+.++ ++.      |++.++
T Consensus       283 ~~~~~~~~---~~-------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g  332 (393)
T PRK09705        283 GFCGFIWL---PL-------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVA  332 (393)
T ss_pred             HHHHHHHc---cc-------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHH
Confidence            66554432   11                   11112  1245677888888887777778875 455      899999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHHHHHHHhcCcce
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAALVLFLAGTTRY  250 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~  250 (596)
                      +.+...++++.++|.+.|++.+..| |...|++.++..++...+.....++.
T Consensus       333 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        333 FMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999998765 78888887766666655555555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.36  E-value=1.9e-11  Score=138.38  Aligned_cols=135  Identities=15%  Similarity=0.067  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHH
Q 007612           81 NNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLS  160 (596)
Q Consensus        81 ~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  160 (596)
                      ....+..++..++.+++|+++||+ |||++++++.++.+++.++++++   ++                    ...+++.
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~---~s--------------------~~~ll~~  654 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG---NS--------------------ESAMIAL  654 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH---cc--------------------HHHHHHH
Confidence            334556688889999999999997 99999999998888888877776   22                    4445666


Q ss_pred             HHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHH
Q 007612          161 IYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAAL  240 (596)
Q Consensus       161 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~  240 (596)
                      +++.+++.++..+...++++|++|++.      |++++|+.+...++|+++||++++++.+. +...+|++.++..+++.
T Consensus       655 ~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~  727 (742)
T TIGR01299       655 LCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGG  727 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence            777777777788889999999999999      99999999999999999999999988664 45667777766655555


Q ss_pred             HHHHhc
Q 007612          241 VLFLAG  246 (596)
Q Consensus       241 ~~~~~~  246 (596)
                      ++.+..
T Consensus       728 ll~~~L  733 (742)
T TIGR01299       728 LLALKL  733 (742)
T ss_pred             HHHHhC
Confidence            544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.36  E-value=1.9e-11  Score=130.41  Aligned_cols=166  Identities=13%  Similarity=0.050  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhh
Q 007612           53 ATLAFFGVGVNLVLFLTRVLQQNNA---EAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSS  129 (596)
Q Consensus        53 ~~~~~~~~~~~l~~yl~~~lg~~~~---~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~  129 (596)
                      .......+.++++.|+.+..+....   ..+.+.+...++..++.++.|+++||+ |||+.+.++..+..++.+.+.+. 
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~-  308 (408)
T PRK09874        231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFV-  308 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHh-
Confidence            3344445567778887765443221   234555666777888899999999997 99999998887777666655544 


Q ss_pred             ccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHH
Q 007612          130 YLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGS  209 (596)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~  209 (596)
                                            .+.+.+++.+++.|++.+...|...+++.+..|++.      |++.+++++...++|.
T Consensus       309 ----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~  360 (408)
T PRK09874        309 ----------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGN  360 (408)
T ss_pred             ----------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHH
Confidence                                  125667778889999999999999999999888888      8999999999999999


Q ss_pred             HHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCc
Q 007612          210 LFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTT  248 (596)
Q Consensus       210 ~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  248 (596)
                      .+||.++|++.+..||+..|++.+++.+++.+..+...+
T Consensus       361 ~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        361 VTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888777666655544333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.36  E-value=7.2e-12  Score=134.65  Aligned_cols=163  Identities=10%  Similarity=0.066  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhh
Q 007612           53 ATLAFFGVGVNLVLFLTRVL---QQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSS  129 (596)
Q Consensus        53 ~~~~~~~~~~~l~~yl~~~l---g~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~  129 (596)
                      ....+.....+++.|+.+.+   +.+..+.+.+.+...++..++.+++|+++||+ |||+.+.++.++..++.++++++ 
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~-  312 (420)
T PRK09528        235 VACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA-  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc-
Confidence            33334444456777776543   56667788999999999999999999999997 99999998888888887777765 


Q ss_pred             ccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH-HHHHHhHH
Q 007612          130 YLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY-FYLALNLG  208 (596)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg  208 (596)
                        +                    +.+.+++.+++.+++.+...+....++.+.+|++.      |++..+. ++...++|
T Consensus       313 --~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg  364 (420)
T PRK09528        313 --T--------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLG  364 (420)
T ss_pred             --c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHH
Confidence              2                    26667778888888888877788888999999887      7777665 67788999


Q ss_pred             HHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          209 SLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       209 ~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      .+++|.+.|++.+..||+..|.+.++..++..++.+.
T Consensus       365 ~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        365 AVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999877665555444433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.36  E-value=4.1e-11  Score=127.13  Aligned_cols=169  Identities=11%  Similarity=-0.089  Sum_probs=142.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.++..+...++.........++.+.|+++ +|.++.+.+.+.+...++..++.++.|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            556666677777777777888899999965 899999999999998999999999999999997 999999999999999


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      ...+++++                       ++.+.+++...+.|++.|...+....++.+. |+++      |+++.++
T Consensus       283 ~~~~~~~~-----------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~  332 (382)
T TIGR00902       283 RWAIIGAI-----------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQAL  332 (382)
T ss_pred             HHHHHHhH-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHH
Confidence            88887766                       3377788889999999999999999999988 8777      8899999


Q ss_pred             HH-HHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHH
Q 007612          201 FY-LALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVL  242 (596)
Q Consensus       201 ~~-~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~  242 (596)
                      ++ ....+|..++|.++|++.++.|+ ..|++.+++.++++++
T Consensus       333 ~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       333 YNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            76 46789999999999999999886 5676666665555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00897 2A0118 polyol permease family

Probab=99.35  E-value=3.4e-11  Score=128.71  Aligned_cols=177  Identities=16%  Similarity=0.102  Sum_probs=131.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHH-HHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCA-IFQGIFV  119 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~-~~~~~~~  119 (596)
                      |.++...+..++....+++..+++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            45666777777888888999999999885 5899999999999999999999999999999997 9888764 3333333


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ++.+.+.+.....                  .++....++..++.|++.+...+ ......+.. +++      |++++|
T Consensus       300 ~~~~~l~~~~~~~------------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~------~g~~~g  353 (402)
T TIGR00897       300 IFTLALYYIPQHF------------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKH------KGAAMS  353 (402)
T ss_pred             HHHHHHHHHHHcc------------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cch------hHHHHH
Confidence            3333332220000                  02245556667777777776544 345556654 456      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      +.+...++|..++|.++|++.+..||...|++.+++.+++.++..+
T Consensus       354 ~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       354 VLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888776666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.33  E-value=2.1e-11  Score=129.60  Aligned_cols=160  Identities=15%  Similarity=0.067  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGL  122 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~  122 (596)
                      +........+.+...+.+..+++.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  318 (405)
T TIGR00891       240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLI  318 (405)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHH
Confidence            33344444445555566778889999999999999999999999999999999999999997 99999888776543332


Q ss_pred             HHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHH
Q 007612          123 VLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFY  202 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  202 (596)
                      ...... .                     .+...+.++.++.+++.+...+..++++.|.+|++.      |++++|+.+
T Consensus       319 ~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~  370 (405)
T TIGR00891       319 IPVFAI-G---------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTY  370 (405)
T ss_pred             HHHHHh-C---------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHH
Confidence            222111 0                     124455555566666666777888899999999998      999999999


Q ss_pred             HHHhHHHHHHhhhhhhhccccc-chHHHHH
Q 007612          203 LALNLGSLFSNTILGYFEDEGM-WALGFWV  231 (596)
Q Consensus       203 ~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~  231 (596)
                      ...++|+.++|.+.|++.+..| |+..+..
T Consensus       371 ~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       371 QLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            9999999999999999999888 8766654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.32  E-value=1.1e-10  Score=124.27  Aligned_cols=174  Identities=14%  Similarity=-0.034  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGL  122 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~  122 (596)
                      ++..+...++.....+....+++.|+.+..|.+..+.+++.+...++..++.++.|+++||+ |||+.+ ++..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            34444444555555666667888898888999999999999999999999999999999997 887654 4444433433


Q ss_pred             HHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHH
Q 007612          123 VLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFY  202 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  202 (596)
                      .++...   +                   .+...+++..++.|++.+...+...+.+.+..| +.      |++++++++
T Consensus       285 ~~l~~~---~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~  335 (390)
T PRK03545        285 LLLLPA---A-------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFS  335 (390)
T ss_pred             HHHHHH---h-------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHH
Confidence            332221   0                   225566667778888887777777788888765 46      889999999


Q ss_pred             HHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcC
Q 007612          203 LALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       203 ~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  247 (596)
                      ...++|..+||.++|++.+..|++..|++.+.+.+++++..+...
T Consensus       336 ~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        336 GIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            899999999999999999999999999988877777666554433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.32  E-value=2.9e-11  Score=129.78  Aligned_cols=162  Identities=14%  Similarity=-0.088  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccC
Q 007612           57 FFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRP  136 (596)
Q Consensus        57 ~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  136 (596)
                      ..++..++|.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++.+.++.++..++.+++.+.   +    
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~---~----  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM---P----  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc---c----
Confidence            345667889999888999999999999999999999999999999995 88888888877777776666544   2    


Q ss_pred             CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhh
Q 007612          137 RGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTIL  216 (596)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~  216 (596)
                                      +.....++.++.|++.+...+...+++.+.+|++.      |++++++++...++|..+||.+.
T Consensus       311 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~  368 (417)
T PRK10489        311 ----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALL  368 (417)
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHH
Confidence                            25556667778888888777777889999999988      99999999999999999999999


Q ss_pred             hhhcccccchHHHHHHHHHHHHHHHHHHhcCc
Q 007612          217 GYFEDEGMWALGFWVSTGSAFAALVLFLAGTT  248 (596)
Q Consensus       217 g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  248 (596)
                      |++.+..|++..+++.++..++..++.....+
T Consensus       369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        369 GGLGAMMTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999889888887766554444444433333

>PRK12382 putative transporter; Provisional

Probab=99.31  E-value=4.3e-11  Score=127.27  Aligned_cols=162  Identities=13%  Similarity=0.163  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhc
Q 007612           51 GLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSY  130 (596)
Q Consensus        51 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~  130 (596)
                      +.....+..+..+++.|+++ .|++.  .+...+.+.++..++.++.|++.||+ |+||.+.++..+..++.+++.+.  
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--  299 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA--  299 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc--
Confidence            33445555666778888764 46653  45566667777888999999999997 99999998888888877766554  


Q ss_pred             cccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHH
Q 007612          131 LFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSL  210 (596)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  210 (596)
                       +                    +....+++.++.|++.+...+...+.+.+.+|+++      |++++++++...++|..
T Consensus       300 -~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~  352 (392)
T PRK12382        300 -P--------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYG  352 (392)
T ss_pred             -c--------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHH
Confidence             2                    25566777888899988888888889999999888      99999999999999999


Q ss_pred             HHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          211 FSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       211 ~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      ++|.+.|++.++.||+..|.+.++..+++.+..+.
T Consensus       353 ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        353 VSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999888777666655543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.31  E-value=9.7e-11  Score=128.59  Aligned_cols=149  Identities=15%  Similarity=0.072  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 007612           59 GVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRG  138 (596)
Q Consensus        59 ~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (596)
                      .+..++|.|+++++|++..+.+++.+...++..++.+++|+++||+ |||+++.++..+..++.+++...   +.     
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~---~~-----  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAI---GG-----  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhc---cc-----
Confidence            4567899999889999999999999999999999999999999997 99999888776655554433322   11     


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhh
Q 007612          139 CGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGY  218 (596)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~  218 (596)
                                   .+.....+..++.+....+..+..++++.|.+|++.      |++.+++++...++|+.+||.++|+
T Consensus       364 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~  424 (496)
T PRK03893        364 -------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGAL  424 (496)
T ss_pred             -------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHH
Confidence                         123333344444433333345677788999999988      9999999999999999999999999


Q ss_pred             hcccccchHHHHHHHHH
Q 007612          219 FEDEGMWALGFWVSTGS  235 (596)
Q Consensus       219 l~~~~~~~~~f~~~~~~  235 (596)
                      +.+..||+..+.+....
T Consensus       425 l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        425 IAQRLDLGTALASLSFS  441 (496)
T ss_pred             HhccCChHHHHHHHHHH
Confidence            99999999887655433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.31  E-value=4.4e-11  Score=129.16  Aligned_cols=159  Identities=18%  Similarity=0.118  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.....+...++....++.+..++|.|+++.+|++..+.++......++..++.+++|+++||+ |||+.++++..+..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~  316 (434)
T PRK15075        238 RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAIL  316 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            3333334445556677888889999999988999999999888888899999999999999997 999988776544332


Q ss_pred             HHH-HHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          121 GLV-LLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       121 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ... .......  .                  .+.....+..++.+++.+...+....+..|.+|++.      |+++++
T Consensus       317 ~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g  370 (434)
T PRK15075        317 TAYPALSWLVA--A------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFS  370 (434)
T ss_pred             HHHHHHHHHHc--C------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchhee
Confidence            221 1111101  0                  112233333445556666666777788999999998      999999


Q ss_pred             HH-HHHHhHHHHHHhhhhhhhcccccch
Q 007612          200 YF-YLALNLGSLFSNTILGYFEDEGMWA  226 (596)
Q Consensus       200 ~~-~~~~~lg~~~~~~i~g~l~~~~~~~  226 (596)
                      +. +.+..+++.++|.+.|++.+..|+.
T Consensus       371 ~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        371 LAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            85 4444456788999999999887854

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.31  E-value=1.1e-11  Score=110.34  Aligned_cols=133  Identities=21%  Similarity=0.292  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 007612           83 VSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIY  162 (596)
Q Consensus        83 ~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  162 (596)
                      .+.+.++..++.++.|+++||+ |||+.+.++..+..++.+++...                       .+.+.+.+.++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~   59 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS-----------------------SNITVLIIARF   59 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHH
Confidence            3455677888999999999997 99999999988888887777665                       22667788899


Q ss_pred             HHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHH
Q 007612          163 FVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVL  242 (596)
Q Consensus       163 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~  242 (596)
                      +.|++.+...+...+++.|.+|+++      |++..++.+...++|..++|.+.+++.+..+|++.|++.....++..+.
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (141)
T TIGR00880        60 LQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL  133 (141)
T ss_pred             HHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998      9999999999999999999999999998889999988877665555544


Q ss_pred             HHh
Q 007612          243 FLA  245 (596)
Q Consensus       243 ~~~  245 (596)
                      ...
T Consensus       134 ~~~  136 (141)
T TIGR00880       134 LAF  136 (141)
T ss_pred             Hhh
Confidence            443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.31  E-value=8.1e-11  Score=127.03  Aligned_cols=178  Identities=15%  Similarity=0.103  Sum_probs=114.8

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           42 AGIIILLN-QGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        42 ~~~~~~~~-~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      ..+..+.. .++....+|++..++|.|+.+.+|.+..+.+...+...++..++.++.|+++||+ |||+.++++.++..+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~  321 (432)
T PRK10406        243 RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAAL  321 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            33433333 3344778889999999999988999999988888888888888899999999997 999988776554433


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      ..+....... ..                  .+....+....+..++.+...+....+..|.+|++.      |++++|+
T Consensus       322 ~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~  376 (432)
T PRK10406        322 FTVPILSALQ-NV------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGL  376 (432)
T ss_pred             HHHHHHHHHH-cC------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhH
Confidence            3322221100 00                  012222222222223333444566788899999999      9999999


Q ss_pred             HHHHHh-HHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          201 FYLALN-LGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       201 ~~~~~~-lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      .+...+ +++..+|.+.+++.....|...+++.++..+++.+..++
T Consensus       377 ~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        377 SYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            665544 445568888886644333655666655555555554444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.29  E-value=1.1e-10  Score=123.68  Aligned_cols=156  Identities=13%  Similarity=0.174  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccc
Q 007612           55 LAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLI  134 (596)
Q Consensus        55 ~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~  134 (596)
                      ..+.....++|.|+++ .|.++.+.+...+...++..++.++.|+++||+ |+|+.+.++..+..++..... .      
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------  284 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------  284 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence            3344455678888865 699999999999999999999999999999997 999998888777666554332 1      


Q ss_pred             cCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhh
Q 007612          135 RPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNT  214 (596)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~  214 (596)
                                         ........++.|++.+...|...+.+.|..|+++      ++...+.++...++|..+||.
T Consensus       285 -------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~  339 (381)
T PRK03633        285 -------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPS  339 (381)
T ss_pred             -------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                               1122345566677666778999999999998877      777788888889999999999


Q ss_pred             hhhhhcccccchHHHHHHHHHHHHHHHHHH
Q 007612          215 ILGYFEDEGMWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       215 i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      ++|++.++++|++.|.+.+...++..+..+
T Consensus       340 ~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        340 FTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987766655544433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.29  E-value=3.8e-11  Score=129.81  Aligned_cols=179  Identities=15%  Similarity=0.046  Sum_probs=123.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.+|...+..++.....+++..++|.|+++..|+++.++++..+...++..++.+++|+++||+ |+++....+.....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            4567777777777777888999999999988999999999999999999999999999999996 654432233222221


Q ss_pred             H---HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          121 G---LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       121 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      .   ...+...   +.                  .+.....+..++.|++..+..........|.+|++.      |+++
T Consensus       330 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  382 (438)
T TIGR00712       330 VTIAVIVYWMN---PA------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA  382 (438)
T ss_pred             HHHHHHHHHhc---CC------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeee
Confidence            1   1111111   10                  112323333344444433222222346678899888      9999


Q ss_pred             HHHHHHHHhHHH-HHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcC
Q 007612          198 FSYFYLALNLGS-LFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       198 ~~~~~~~~~lg~-~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  247 (596)
                      .|+.+...++|+ .++|.+.|++.+..||...|++..+..+++.+..++..
T Consensus       383 ~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
T TIGR00712       383 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  433 (438)
T ss_pred             hhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999988888875 68999999999989999999887766655555544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.27  E-value=4.5e-11  Score=125.42  Aligned_cols=162  Identities=15%  Similarity=0.124  Sum_probs=120.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHH--HH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG--IF  118 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~--~~  118 (596)
                      +.++.+.+..++.....+.+..+++.|+.+.+|++..+.+...+...++..++.++.|+++||+.+||+..+....  ..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            4667777777788888888889999999999999999999999999999999999999999985234443322211  11


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .++.......   +.                  .+.....+..++.|+......+....+..|.+|++.      |+++.
T Consensus       296 ~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  348 (379)
T TIGR00881       296 IVSLLVYWLN---PA------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAA  348 (379)
T ss_pred             HHHHHHHhcC---cc------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHH
Confidence            1222211111   11                  123444455566666555556666788899999998      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcccccchHHH
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGMWALGF  229 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f  229 (596)
                      ++++...++|..++|.+.|.+.+..||++.|
T Consensus       349 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       349 GFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            9999999999999999999999999998754

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.27  E-value=2.3e-10  Score=118.74  Aligned_cols=179  Identities=18%  Similarity=0.134  Sum_probs=146.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.++..+...++...+.|+..+|+.+++++..|+|....+++...+.++..++.+++|+++||  +.|+.+.....+.++
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            467778888888889999999999999999999999999999999999999999999999999  788888888777777


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      ..+.+.+..                      .+.+..++..++.|+..+........-+++. -++.      +..+.++
T Consensus       289 ~~l~l~~~~----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~-~p~~------~~~a~sl  339 (394)
T COG2814         289 ALLALTFTG----------------------ASPALALALLFLWGFAFSPALQGLQTRLARL-APDA------ADLAGSL  339 (394)
T ss_pred             HHHHHHHhc----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhccc-CCCc------hHHHHHH
Confidence            776666551                      2355566666667777666555555555552 2445      7799999


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcce
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRY  250 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  250 (596)
                      +....|+|..+|..++|.+.+++|+....++.++..++++++.+...++.
T Consensus       340 ~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~  389 (394)
T COG2814         340 NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD  389 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999988888887776655543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.27  E-value=1e-10  Score=113.19  Aligned_cols=172  Identities=19%  Similarity=0.167  Sum_probs=134.6

Q ss_pred             ccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHH
Q 007612           31 PAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKT  110 (596)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~  110 (596)
                      |...-.+.....+|.+.++.++..+.-+=+...-+.++++++|+|+.+++.+.+.......+.+++.|.++||+ |++-.
T Consensus       254 pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~  332 (459)
T KOG4686|consen  254 PKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLW  332 (459)
T ss_pred             cccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceeh
Confidence            33333445556777777777776666555556667899999999999999999999999999999999999998 99887


Q ss_pred             HHHHHH-HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccc
Q 007612          111 CAIFQG-IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAK  189 (596)
Q Consensus       111 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  189 (596)
                      .+.+.. ...++...+.+.                         ...-+++..+.|+......-+.++.++...|+++  
T Consensus       333 wv~~a~~~tl~~H~~l~Ft-------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q--  385 (459)
T KOG4686|consen  333 WVASACILTLLGHSGLFFT-------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ--  385 (459)
T ss_pred             hHHHHHHHHHHHhhhHHhh-------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH--
Confidence            766544 555566666655                         3335566778888888887778999999999999  


Q ss_pred             cccchhhHHHHHHHHHhHHHHHHhhhhhhhccccc---chHHHHHHHH
Q 007612          190 EGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGM---WALGFWVSTG  234 (596)
Q Consensus       190 ~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~---~~~~f~~~~~  234 (596)
                          .|++++..+...|+|-.+.|+++|.+.+.-|   |--+|++...
T Consensus       386 ----LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~  429 (459)
T KOG4686|consen  386 ----LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG  429 (459)
T ss_pred             ----hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence                9999999999999999999999999987644   4445554443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.26  E-value=2.7e-10  Score=123.44  Aligned_cols=185  Identities=15%  Similarity=0.073  Sum_probs=152.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCch--HHHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRF--KTCAIFQG  116 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~--~~l~~~~~  116 (596)
                      +.|.+...+++.++.+-+...+......|.++++|++..+...+.....+...+++++.|++.||+ |.|  ++++++++
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            456777888888988888899999999999999999999999999999999999999999999997 988  88888776


Q ss_pred             HHHHHHHHHHh--hhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccch
Q 007612          117 IFVIGLVLLSL--SSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSK  194 (596)
Q Consensus       117 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  194 (596)
                      +..+..+...+  .   ++              ....++.+.+++.-++.|+..|..++..-+++++..|+++      .
T Consensus       358 ~~~~i~~~g~~G~~---~~--------------~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e  414 (477)
T PF11700_consen  358 LWIIIPLYGLFGFW---PS--------------FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------E  414 (477)
T ss_pred             HHHHHHHHHHHHhh---hc--------------ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------h
Confidence            65443332222  1   11              0011346668888889999999999999999999999999      8


Q ss_pred             hhHHHHHHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHHHHHHHhcC
Q 007612          195 VAFFSYFYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       195 ~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~  247 (596)
                      +..||++....-..+.+||.+.|.+.+.+| .|+.+....+..+++++++....
T Consensus       415 ~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  415 AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999988776 88888877777777776665543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.24  E-value=2.3e-10  Score=125.42  Aligned_cols=177  Identities=17%  Similarity=0.136  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH-HHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 007612           44 IIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVS-KWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGL  122 (596)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~-~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~  122 (596)
                      +......++.....+....+.++|+.+++|++..+.++... ...++..++.+++|+++||+ |+||.++++.++.+++.
T Consensus       225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            33333344555555566677888988889999999999875 55678999999999999997 99998877665544443


Q ss_pred             HHHHh-hhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          123 VLLSL-SSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       123 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      +.+.. +.. +                   .+...+.+..++..++.|...+...++..+..+++.      +++.+++.
T Consensus       304 l~~~~l~~~-~-------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~  357 (491)
T PRK11010        304 AGYWLLSIT-D-------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALL  357 (491)
T ss_pred             HHHHHHHhc-c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHH
Confidence            33221 111 0                   123334444555555555555667888889998888      88899999


Q ss_pred             HHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcC
Q 007612          202 YLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  247 (596)
                      +...++|..+++.+.|++.+..||+..|.+..++.+.++++....+
T Consensus       358 ~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        358 SALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888999999999999999888877777666555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.24  E-value=1.4e-10  Score=119.22  Aligned_cols=187  Identities=17%  Similarity=0.060  Sum_probs=143.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF  118 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~  118 (596)
                      +.+..|.++..++...-++-++-.+++.|+++++|.++.+++.....+.+...+..+++|+|+||+ |.+|++++....+
T Consensus       216 ~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~  294 (417)
T COG2223         216 SNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGM  294 (417)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999999999999999999999997 8888888887777


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      +++..++.+..+..                .+..+....+.....+++..|.-...+..++..++|++       -+...
T Consensus       295 ~~~~~~l~~~~~~~----------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~  351 (417)
T COG2223         295 ALAAALLSLFLTGF----------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVT  351 (417)
T ss_pred             HHHHHHHHcccccc----------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHH
Confidence            77777777652100                00122333333333344444444455567777777653       56888


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHHHHHHHhcCcc
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAALVLFLAGTTR  249 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~  249 (596)
                      ++.....++|+..-|...|...+.+| +...|++.....+++..+.+....|
T Consensus       352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998888777 8889998888777777666554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.23  E-value=1.9e-09  Score=111.14  Aligned_cols=107  Identities=14%  Similarity=0.041  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhhCC---Ch----HHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccc
Q 007612           61 GVNLVLFLTRVLQQ---NN----AEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFL  133 (596)
Q Consensus        61 ~~~l~~yl~~~lg~---~~----~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~  133 (596)
                      ..++|+|+++..+.   ++    +-.+...++..+...+.+|+-|.++|...-|||.+-+...+.+++...+.++   |+
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i---~~  111 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI---PP  111 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh---CC
Confidence            45678899887665   43    3346667777888888999999999997335556666666777777777776   22


Q ss_pred             ccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccc
Q 007612          134 IRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEED  187 (596)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  187 (596)
                                       ..+....++...+..++..+......+++.|..++++
T Consensus       112 -----------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~  148 (438)
T COG2270         112 -----------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN  148 (438)
T ss_pred             -----------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc
Confidence                             1235556666667788888888999999999998877

>TIGR01272 gluP glucose/galactose transporter

Probab=99.23  E-value=6.6e-10  Score=114.35  Aligned_cols=80  Identities=13%  Similarity=0.015  Sum_probs=68.3

Q ss_pred             hhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc---------
Q 007612          152 LEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE---------  222 (596)
Q Consensus       152 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~---------  222 (596)
                      .++..++++.++.|.|.+..+++.++++++..|+++      +.+.+++.+....+|..++|.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            458889999999999999999999999999999888      88999999999999999999999977631         


Q ss_pred             -------ccchHHHHHHHHHHH
Q 007612          223 -------GMWALGFWVSTGSAF  237 (596)
Q Consensus       223 -------~~~~~~f~~~~~~~~  237 (596)
                             ..|+++|++.++..+
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~  103 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALA  103 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Confidence                   368888875554433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.22  E-value=2.5e-10  Score=124.03  Aligned_cols=171  Identities=13%  Similarity=0.019  Sum_probs=134.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhc-cCchHHHHHHH--HH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSY-WGRFKTCAIFQ--GI  117 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~-~Gr~~~l~~~~--~~  117 (596)
                      +.++..++..++....++....+++.|+++ +|++..+++.+.+...++..++.+++|+++||. .++|+...++.  +.
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            456667777777778888888899999864 799999999999999999999999999999983 13344333332  22


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      ..++.+++.+.                       .+.+.+++.+++.|++.+...+...+++.|.+|+++      +++.
T Consensus       320 ~~l~~ll~~~~-----------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~  370 (455)
T TIGR00892       320 NGLTHLLCALA-----------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSA  370 (455)
T ss_pred             HHHHHHHHHHh-----------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhH
Confidence            23333333333                       236667788899999999999999999999999988      9999


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhhcccc-cchHHHHHHHHHHHHHHH
Q 007612          198 FSYFYLALNLGSLFSNTILGYFEDEG-MWALGFWVSTGSAFAALV  241 (596)
Q Consensus       198 ~~~~~~~~~lg~~~~~~i~g~l~~~~-~~~~~f~~~~~~~~~~~~  241 (596)
                      +++++...++|..+||.++|++.+.. +|++.|++.++..+++.+
T Consensus       371 ~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       371 VGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            99999999999999999999998876 599999988766555544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.22  E-value=7.7e-09  Score=111.35  Aligned_cols=162  Identities=17%  Similarity=0.100  Sum_probs=114.5

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhc--cC--chHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 007612           63 NLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSY--WG--RFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRG  138 (596)
Q Consensus        63 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~--~G--r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (596)
                      ....|+++++|+++++.....+...+-. ..-++.|.++|-+  .|  ||+-++++.++.+++...++..   +.     
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~---~~-----   81 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL---PA-----   81 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc---cc-----
Confidence            3456789999999999877666555543 4567789999985  23  4445566666665555555543   11     


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhh
Q 007612          139 CGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGY  218 (596)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~  218 (596)
                                 ...+.....+..++..+|....-..+-+++.|....+...    |+...+..+....+|++++..+.|.
T Consensus        82 -----------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~  146 (433)
T PF03092_consen   82 -----------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGP  146 (433)
T ss_pred             -----------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                       0122444555667778888888889999999987655422    7788888888999999999999999


Q ss_pred             hcccccchHHHHHHHHHHHHHHHHHHhcCc
Q 007612          219 FEDEGMWALGFWVSTGSAFAALVLFLAGTT  248 (596)
Q Consensus       219 l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  248 (596)
                      +.+..+++..|.+..+..++..+..+...+
T Consensus       147 l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  147 LLDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             hhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            999999999998887665555444444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.22  E-value=3.1e-10  Score=122.98  Aligned_cols=186  Identities=14%  Similarity=0.037  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGL  122 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~  122 (596)
                      ++..++..+........+..+.+. +.+++|++..+.++......++..++.+++|+++||+ |||+.+.++.++..++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       286 FLGVVLQWFQQFTGINAIMYYSPT-IFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHhCCeehHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence            333333333333333344444444 4467899998888888889999999999999999997 99999999888777777


Q ss_pred             HHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHH
Q 007612          123 VLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFY  202 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  202 (596)
                      +++.+......            .+.+...+...+....++.+....+..+....++.|.+|++.      |+++.++.+
T Consensus       364 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~  425 (481)
T TIGR00879       364 FVLGILGASFV------------TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAV  425 (481)
T ss_pred             HHHHHHhhccc------------CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHH
Confidence            66663211000            000000122222222222222223345677778899999998      999999999


Q ss_pred             HHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCc
Q 007612          203 LALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTT  248 (596)
Q Consensus       203 ~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  248 (596)
                      ...++|++++|.+.+++.+..+|++.|++.+++.+++.++..+..+
T Consensus       426 ~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       426 AANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence            9999999999999999988889999998877776666655554444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.21  E-value=2.1e-09  Score=115.37  Aligned_cols=359  Identities=15%  Similarity=0.102  Sum_probs=207.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHH-HHHHHH----HHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           46 ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEA-ANNVSK----WTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~-~~~~~~----~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      ..+...+.....+........+.....+.+..+. +.....    ..+...+.+++.|.++||+ |||..+.+......+
T Consensus        26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l  104 (463)
T KOG2816|consen   26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTIL  104 (463)
T ss_pred             HHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHH
Confidence            3333444433334444555566655544433222 222222    2567788899999999997 999999999888888


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHH--HhccccccchhhhhhccCCccccccccchhhHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVA--LGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g--~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      ..+.+.+.                         .+.+++   +.+  -+.+.......++++|....+.      |...+
T Consensus       105 ~~~~~~~~-------------------------~~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~  150 (463)
T KOG2816|consen  105 PALCLLFQ-------------------------GYWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSI  150 (463)
T ss_pred             hHHHHHHH-------------------------HHHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHH
Confidence            87777765                         122222   322  3345667888899999999888      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCC-hhHHHHHHHHHHHHhhccc
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGN-PLARFCQVIVAATKKWRVH  277 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  277 (596)
                      ++.+.....+..++|.+++++.+..|...+|++..+..++..+-.....++..+++.... ..                 
T Consensus       151 gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~-----------------  213 (463)
T KOG2816|consen  151 GLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL-----------------  213 (463)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc-----------------
Confidence            999999999999999999999999999999999988877777666655554333222110 00                 


Q ss_pred             cCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhH
Q 007612          278 LSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTI  357 (596)
Q Consensus       278 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (596)
                      ....++....+                                      ...++++....  .+..|..+.....  ...
T Consensus       214 ~~~~~~~~~~~--------------------------------------~~~~~~~~~~~--~~~~r~~l~l~l~--~~~  251 (463)
T KOG2816|consen  214 RELTPGSLDSS--------------------------------------HVADAFQSLTK--VGPDRLLLLLLLV--AFL  251 (463)
T ss_pred             cccCCCcccch--------------------------------------hhhhhhhhhcc--cCCCccchHHHHH--HHH
Confidence            00000000000                                      00011110000  1112222211111  111


Q ss_pred             hHhhhhcccc---ceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHH
Q 007612          358 LYSVVFTQMA---SLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIG  434 (596)
Q Consensus       358 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig  434 (596)
                      .+.-......   .++.......+.+-  +..-....+.......++..+...       +..+        ..+.+..|
T Consensus       252 ~~~~~~~~~~~~~~~yl~~~f~w~~~~--~s~~~~~~~~~~~i~~l~~~~~l~-------~~l~--------~~~~i~lG  314 (463)
T KOG2816|consen  252 SSLPEAGGASDVLLLYLKAKFGWNKKE--FSDLLSLVSILGIISQLLLLPLLS-------SILG--------EKRLISLG  314 (463)
T ss_pred             HHHHHhcCceeEEEEEEeeecCcCHHH--HHHHHHHHHHHHHHHHHHHHHHHH-------HHHh--------hhhHhhHH
Confidence            1111111111   12222111222110  000001111111222222222222       1122        23368889


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHH
Q 007612          435 LVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMT  514 (596)
Q Consensus       435 ~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~  514 (596)
                      +....+...++++.+                    .. |......+.........|...+++.....++.+|.++++...
T Consensus       315 l~~~~~~~~~~af~~--------------------~~-w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~  373 (463)
T KOG2816|consen  315 LLSEFLQLLLFAFAT--------------------ET-WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISG  373 (463)
T ss_pred             HHHHHHHHHHHHHhc--------------------cc-hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHH
Confidence            988888888888753                    22 333344555555667789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccc
Q 007612          515 SISLGNYVSSLLLTMVMKISTE  536 (596)
Q Consensus       515 ~~~lg~~lg~~l~~~i~~~~~~  536 (596)
                      ...+.+.+++.+.+.+...+.+
T Consensus       374 i~~l~~~~~~~~~~~i~~~t~~  395 (463)
T KOG2816|consen  374 IEGLSGVVSPALYGNIFALTLD  395 (463)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHH
Confidence            9999999999999988766644

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.21  E-value=3e-10  Score=123.79  Aligned_cols=179  Identities=15%  Similarity=0.068  Sum_probs=123.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHH-------
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTC-------  111 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l-------  111 (596)
                      ..+.+|...+..++....++.+.+++|.|+.+.+|.+..+.++..+...++..++.+++|+++||+ ++|+..       
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~  337 (465)
T TIGR00894       259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARK  337 (465)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHH
Confidence            346788889999999999999999999999999999999999999999999999999999999996 544211       


Q ss_pred             -HHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccccc
Q 007612          112 -AIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKE  190 (596)
Q Consensus       112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  190 (596)
                       ..+......+..++..... .                   .+....++...+.+.+.++..+.......|..|. .   
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~---  393 (465)
T TIGR00894       338 IFNGIGGLGPGIFAYALPYL-S-------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F---  393 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-C-------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H---
Confidence             1111111111111111100 0                   1133333344444555555555555555566554 5   


Q ss_pred             ccchhhHHHHHHHHHhHHHHHHhhhhhhhccc---ccchHHHHHHHHHHHHHHHHHHh
Q 007612          191 GHSKVAFFSYFYLALNLGSLFSNTILGYFEDE---GMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       191 ~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~---~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                         ++...++.+...++|+.++|.+.|++.+.   .+|..+|.+.++..+++.++...
T Consensus       394 ---~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       394 ---LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence               88999999999999999999999998764   34888888877666666554433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.20  E-value=3.7e-10  Score=120.36  Aligned_cols=171  Identities=12%  Similarity=0.050  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVL---QQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF  118 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~  118 (596)
                      .++..+...++....+.....+.+.|+.+.+   +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++.
T Consensus       216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~  294 (396)
T TIGR00882       216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIM  294 (396)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence            3444444455555555555567788887765   55666778888888888899999999999997 9999999988877


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .++..+..++   +                    +.+.+++..++.|++.+........+..+..+++.      +++..
T Consensus       295 ~l~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~  345 (396)
T TIGR00882       295 SVRIIGSSFA---T--------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIY  345 (396)
T ss_pred             HHHHHHHHhc---C--------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEee
Confidence            7776665554   2                    25556777888888866555555556666666666      66766


Q ss_pred             HH-HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHH
Q 007612          199 SY-FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVL  242 (596)
Q Consensus       199 ~~-~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~  242 (596)
                      +. ++....+|.+++|.++|++.+..||+.+|.+.++..++..++
T Consensus       346 ~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       346 LIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            66 677889999999999999999999999999877766555544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.19  E-value=5.1e-10  Score=122.36  Aligned_cols=174  Identities=9%  Similarity=-0.069  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchH-------HHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFK-------TCAIF  114 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~-------~l~~~  114 (596)
                      ..|.+.+..++.....+.+..++|.|+.+.+|++..+++.+.+...++..++.+++|+++||+ |||+       .+.+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~  331 (476)
T PLN00028        253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV  331 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence            345555555555666667778899999888999999999999999999999999999999996 8652       22222


Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccch
Q 007612          115 QGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSK  194 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  194 (596)
                      .++..+..+++...                       .+.....+..++.+++.+...+...+++.+..| +.      |
T Consensus       332 ~~l~~i~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~  381 (476)
T PLN00028        332 QTLGGVFCIWLGRA-----------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------L  381 (476)
T ss_pred             HHHHHHHHHHhccc-----------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------c
Confidence            22222222222222                       123334444455555544444555555555543 45      8


Q ss_pred             hhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcC
Q 007612          195 VAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       195 ~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  247 (596)
                      ++..++.+.+.++|+.++|.+.+ ..+..+|+..|++.+++.+++.++.++.+
T Consensus       382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        382 GVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            89999988877888888876654 22345799999988777766666655543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.18  E-value=7.6e-10  Score=118.97  Aligned_cols=152  Identities=13%  Similarity=-0.056  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcc
Q 007612           52 LATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYL  131 (596)
Q Consensus        52 ~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~  131 (596)
                      ......+.+..++|.|+++ .|.++.+.+...+...++..++.++.|+++||+ |||+.+..+.++..+..+++...   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~---  316 (426)
T PRK12307        242 SIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI---  316 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH---
Confidence            3333444567788888875 699999999999999999999999999999997 99999988877665554444332   


Q ss_pred             ccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHH
Q 007612          132 FLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLF  211 (596)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~  211 (596)
                      +.                  .....+....+..+++..+..+..+.++.|.+|++.      |++++|+.+...++|+.+
T Consensus       317 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~  372 (426)
T PRK12307        317 PQ------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTF  372 (426)
T ss_pred             cc------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHH
Confidence            11                  112212122222223333445666788899999998      999999999999999999


Q ss_pred             HhhhhhhhcccccchHHHHHH
Q 007612          212 SNTILGYFEDEGMWALGFWVS  232 (596)
Q Consensus       212 ~~~i~g~l~~~~~~~~~f~~~  232 (596)
                      +|.+.|++.+..|+....++.
T Consensus       373 gp~~~g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        373 NSMAATWLGITMGLGAALTFI  393 (426)
T ss_pred             HHHHHHHHHHcccHHHHHHHH
Confidence            999999999888876544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.17  E-value=1.6e-09  Score=115.76  Aligned_cols=169  Identities=14%  Similarity=-0.053  Sum_probs=125.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.++...+..++....++....+.|.|+.+.+|+++.+.++......++..++.++.|+++||+ |+|+.+.++.++..+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~  293 (406)
T PRK15402        215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVA  293 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            3455555555555566666667788888888999999998888877788889999999999997 999999998887777


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +..++.+.....                  ..+...++++.++.|+|.+...+......... ++++      |++..+.
T Consensus       294 g~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~  348 (406)
T PRK15402        294 GLLLAALATVIS------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAA  348 (406)
T ss_pred             HHHHHHHHHHcc------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHH
Confidence            777766541100                  12355566777888888887776666555433 3456      8999999


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHH
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGS  235 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~  235 (596)
                      +++...+|..+|+.+.+++.+..++....+...+.
T Consensus       349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~  383 (406)
T PRK15402        349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLAN  383 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHH
Confidence            99999999999999999998877766544444433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.16  E-value=1.5e-09  Score=115.20  Aligned_cols=166  Identities=10%  Similarity=-0.050  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.++..++..++....+....++++.|+. +.|.+..+.+...+...++..+..++.|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            45555556566666666667778888985 5899999999999988888889999999999997 999999988888777


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +.+++...                       ++.+.+++..++.|++.+...+....++.+. ++++      +++..++
T Consensus       283 ~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~  332 (382)
T PRK11128        283 RWGLMGST-----------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQAL  332 (382)
T ss_pred             HHHHHHhh-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHH
Confidence            77666655                       2367778888899999888888888887776 5555      6777887


Q ss_pred             HH-HHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHH
Q 007612          201 FY-LALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAA  239 (596)
Q Consensus       201 ~~-~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~  239 (596)
                      ++ ....+|..+||.++|++.+..|+ ..|+..++..+++
T Consensus       333 ~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        333 YSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            65 55678889999999999998887 4555555444433

>PRK10504 putative transporter; Provisional

Probab=99.16  E-value=9.7e-10  Score=119.92  Aligned_cols=158  Identities=11%  Similarity=-0.045  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.+...+...++....+.....+.|.|++..+|.++.+.++......++..++.++.|+++||+ |||+++.++..+..+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3445555555666666555556677788878999999999999888888888889999999997 999999988887777


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +..++.+...  .                  .+...+.+..++.|++.+...+....+..+.+|++.      ++.++++
T Consensus       340 ~~~~~~~~~~--~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~  393 (471)
T PRK10504        340 VSLLFMLVAL--L------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSL  393 (471)
T ss_pred             HHHHHHhccc--c------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHH
Confidence            7665554311  0                  123334455667788888888888999999999888      9999999


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccccc
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGMW  225 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~~  225 (596)
                      .+....+|..+|+.++|.+.+..++
T Consensus       394 ~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        394 LSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999988766555

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.15  E-value=4.1e-10  Score=117.65  Aligned_cols=155  Identities=12%  Similarity=0.059  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVG-VNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      +.++..+...+.....++... .+.|.|.++.+|.+..+.+...+...++..++.++.|++.||+ |||+.+..+..+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            345555555566666666565 6778888777999999999999999999999999999999996 99999888876666


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ++..++.+..                      .+.+.+++..++.|++.+...+...+++.|.+|++.      |++..+
T Consensus       289 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~  340 (365)
T TIGR00900       289 LAILVVGLTP----------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFG  340 (365)
T ss_pred             HHHHHHHhhc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence            6666555541                      025667778888999999999999999999999998      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhccccc
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGM  224 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~  224 (596)
                      +++...++|..++|.++|++.+..|
T Consensus       341 ~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       341 AQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999887543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.14  E-value=8.6e-10  Score=118.31  Aligned_cols=165  Identities=15%  Similarity=0.039  Sum_probs=117.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHH-HHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTR-VLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKT-CAIFQGIF  118 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~-l~~~~~~~  118 (596)
                      +.+|......++....++++.+++|.|+++ ..|.+..+++...+...++..++.+++|+++||+ |||+. +.+..++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            457778888888888999999999999976 3477888899999999999999999999999997 87764 33333333


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .++..+....   ++                    ....+.+..+.++|.....+.......+.+|++.      |++++
T Consensus       321 ~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~  371 (412)
T TIGR02332       321 AAGWLLASAT---DH--------------------NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAI  371 (412)
T ss_pred             HHHHHHHHhc---CC--------------------HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHH
Confidence            3332221111   11                    1112222223333333333444455567788888      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcccc-cchHHHHHHHHH
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEG-MWALGFWVSTGS  235 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~-~~~~~f~~~~~~  235 (596)
                      ++.+...++|+.++|.+.|.+.+.. +|++.|++.++.
T Consensus       372 g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       372 AVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            9999999999999999999999876 499998876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.14  E-value=4e-10  Score=121.47  Aligned_cols=214  Identities=14%  Similarity=0.043  Sum_probs=139.8

Q ss_pred             hhhhhhcccCCCCCccccCcccc-CC--CccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH
Q 007612            5 EICKEEKFKDDGEEHTLDGSVDY-YG--RPAIRAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAAN   81 (596)
Q Consensus         5 ~~~~~~~~~~e~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~   81 (596)
                      +|.+|+.+.++|.++.++++.+. .+  .+..+..--..+.+|.+.+..++.+++++.+..++|.|+.+.+|+|..+.|+
T Consensus       219 ~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~  298 (466)
T KOG2532|consen  219 SPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGF  298 (466)
T ss_pred             CcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhH
Confidence            57778888888776654332221 11  1222222233468999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHhhhccC-------chHHH-HHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchh
Q 007612           82 NVSKWTGTVYIFSLVGAFLSDSYWG-------RFKTC-AIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLE  153 (596)
Q Consensus        82 ~~~~~~~~~~i~~~~~G~laDr~~G-------r~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (596)
                      ..++..+...+..+++|.++||...       +||++ .++....++.++.+++.   +.                  .+
T Consensus       299 ~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~---~~------------------~~  357 (466)
T KOG2532|consen  299 LSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT---SD------------------EH  357 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec---CC------------------Cc
Confidence            9999999999999999999999622       12222 22333333334444433   11                  11


Q ss_pred             HHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc---ccchHHHH
Q 007612          154 ICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE---GMWALGFW  230 (596)
Q Consensus       154 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~---~~~~~~f~  230 (596)
                      ....++...+.-...|...+....-..|..| +.      -+..+++.+...++.+.++|.+.|.+...   ..|+.+|+
T Consensus       358 ~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~------a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~  430 (466)
T KOG2532|consen  358 RLLAVILLTIAIGLSGFNISGFYKNHQDIAP-QH------AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFL  430 (466)
T ss_pred             chHHHHHHHHHHHHcccchhhhHhhhhhccc-hH------HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHH
Confidence            1111111111111112222222233333333 33      56889999999999999999999999843   37999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 007612          231 VSTGSAFAALVLFLAG  246 (596)
Q Consensus       231 ~~~~~~~~~~~~~~~~  246 (596)
                      +.+++.+++.+.+.+.
T Consensus       431 i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  431 IAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHhchheeEe
Confidence            9988877776555443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.14  E-value=1.6e-09  Score=111.46  Aligned_cols=163  Identities=15%  Similarity=0.031  Sum_probs=125.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRV--LQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      .+.+++..+..++.....-++..|++.|+.+.  +|+++.+.+...+.+..+..++.+++++++||+ |+||.+.++..+
T Consensus       139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l  217 (310)
T TIGR01272       139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFL  217 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence            34556666666666656677889999999864  699999999999999999999999999999997 999998888777


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      .+++.++....   +.                    .. ...+.++.|++.+...|...+...+.+|++.       +++
T Consensus       218 ~~~~~~l~~~~---~~--------------------~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~a  266 (310)
T TIGR01272       218 AVLLSIGAALT---HG--------------------YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQG  266 (310)
T ss_pred             HHHHHHHHHHc---CC--------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhh
Confidence            76665444433   11                    21 2234557889999999999999999887653       233


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHH
Q 007612          198 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGS  235 (596)
Q Consensus       198 ~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~  235 (596)
                      .++. ....+|+.+.|.+.|.+.|..|.+.+|++..+.
T Consensus       267 sai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       267 SGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            3444 456799999999999999988988888755543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00895 2A0115 benzoate transport

Probab=99.13  E-value=8.7e-10  Score=116.61  Aligned_cols=148  Identities=16%  Similarity=0.064  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +..+...+..++....++.+..++| ++.+++|.+..+.+...+...++..++.+++|+++||+ |||+.+....+ ..+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-~~~  326 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLL-GAV  326 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHH-HHH
Confidence            4445555566677777777878887 66678999999999999999999999999999999997 98854443333 333


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      ...++... .                     .+....++..++.|++.+...+...+++.|.+|++.      |++++++
T Consensus       327 ~~~~~~~~-~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~  378 (398)
T TIGR00895       327 FAVLVGST-L---------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGW  378 (398)
T ss_pred             HHHHHHHH-h---------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHH
Confidence            32322221 0                     124556677788899999999999999999999998      9999999


Q ss_pred             HHHHHhHHHHHHhhhhhhh
Q 007612          201 FYLALNLGSLFSNTILGYF  219 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l  219 (596)
                      .+....+|..+||.++|++
T Consensus       379 ~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       379 AIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999876

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.13  E-value=2.3e-09  Score=113.72  Aligned_cols=172  Identities=14%  Similarity=0.041  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGL  122 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~  122 (596)
                      .+..++..+......+....++++|+.+.+|+++.+.+...+...++..++.++.|+++||+ |+|+.+.++..+.+++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            44444444555555566667788888888999999999999999999999999999999997 99999988887777776


Q ss_pred             HHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhh-ccCCccccccccchhhHHHHH
Q 007612          123 VLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGA-DQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      +++.....                      +....++..++.+++.+...+....... +..+++.      ++.+  ..
T Consensus       280 ~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~  329 (382)
T PRK10091        280 LMLFFFGG----------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GG  329 (382)
T ss_pred             HHHHHHHh----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HH
Confidence            55543211                      1233444444555555444444343333 3333333      4433  34


Q ss_pred             HHHHhHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHHHHHHHh
Q 007612          202 YLALNLGSLFSNTILGYFEDE-GMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g~l~~~-~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      +...++|..+||.++|++.+. .+|++.+.+.++..++...++..
T Consensus       330 ~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        330 QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            567789999999999998884 68999998887666555544433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.13  E-value=1.6e-09  Score=115.17  Aligned_cols=174  Identities=19%  Similarity=0.063  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH-HHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTG-TVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      ++..+...++..........+.+.|+.+ .|+++.+.+++...... ...++.+++|++.||+ |+|+.+.++.++..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            4444444455555556666778888875 79999999998888764 5667789999999997 9999998877655333


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCc-cccccccchhhHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDE-EDAKEGHSKVAFFSY  200 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~  200 (596)
                      ......... ..                ...+...++....+.+++.|...+...+...+..++ +.      +++.+++
T Consensus       288 ~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~  344 (390)
T TIGR02718       288 ALLWFAQAA-FW----------------LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTA  344 (390)
T ss_pred             HHHHHHHHH-cc----------------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHH
Confidence            222221101 00                001133344444555667777777888887777765 56      8999999


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHH
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALV  241 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~  241 (596)
                      .+...++|..++|.++|++.+..||+..|++.+++.+++.+
T Consensus       345 ~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       345 VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999989999998887765555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.13  E-value=5.2e-09  Score=115.63  Aligned_cols=203  Identities=14%  Similarity=0.200  Sum_probs=146.0

Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           41 VAGIII-LLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        41 ~~~~~~-~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      +.+.++ .+..+.+.+. .+......+-+.+.++++..+.|++.+.+-++..+...+..+.+-|. -|-|.+-++.++++
T Consensus        96 k~fl~~l~~~~~~q~l~-~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLY-VGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG  173 (735)
T ss_pred             chHHHHHHHHHHHHHhh-hhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence            444444 4444444444 47777777888899999999999999999999999999999999995 66677888899999


Q ss_pred             HHHHHHHhhhcc--c---cc--------cC-----CC-CC---CCCCC----CC---CCCchhHHHHHHHHHHHHHhccc
Q 007612          120 IGLVLLSLSSYL--F---LI--------RP-----RG-CG---NELTP----CG---THSSLEICLFYLSIYFVALGNGG  170 (596)
Q Consensus       120 ~~~~~~~~~~~~--~---~~--------~~-----~~-~~---~~~~~----~~---~~~~~~~~~l~~~~~l~g~g~g~  170 (596)
                      ++.+++.+-...  |   +.        .+     +- ||   ++.++    +.   ..+..-..+++++.++.|+|...
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            998887764110  0   00        00     00 11   11111    21   11112344788888999999999


Q ss_pred             cccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc-------------------ccchHHHHH
Q 007612          171 YQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE-------------------GMWALGFWV  231 (596)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~-------------------~~~~~~f~~  231 (596)
                      +++...+++=|...++.      -...+|+.+....+|.++|..+++++.+.                   ..|+..|++
T Consensus       254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi  327 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI  327 (735)
T ss_pred             CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence            99999999999988777      67889999999999999999988876532                   127778888


Q ss_pred             HHHHHHHHHHHHHhcCccee
Q 007612          232 STGSAFAALVLFLAGTTRYR  251 (596)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~  251 (596)
                      .+.+.++..+.+++++++.+
T Consensus       328 ~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  328 CGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHHhCcccCc
Confidence            87777777776777666554

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.11  E-value=9.8e-12  Score=136.52  Aligned_cols=197  Identities=13%  Similarity=0.146  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 007612           45 IILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVL  124 (596)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~  124 (596)
                      .+++..+.+ ....+......+-+.++++++.++.|++.+.+.++..+..++..+.++|. .|=|.+-++.+++++|.++
T Consensus         7 ~~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    7 FLCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHH
Confidence            344444555 55566666666778899999999999999999999999999999999994 6777888888899999888


Q ss_pred             HHhhhccccccCCCC----------CC--CCCCC-------------------CCCCchhHHHHHHHHHHHHHhcccccc
Q 007612          125 LSLSSYLFLIRPRGC----------GN--ELTPC-------------------GTHSSLEICLFYLSIYFVALGNGGYQP  173 (596)
Q Consensus       125 ~~~~~~~~~~~~~~~----------~~--~~~~~-------------------~~~~~~~~~~l~~~~~l~g~g~g~~~~  173 (596)
                      +++-    .+..+..          ++  +...|                   +.........++++.++.|+|...+++
T Consensus        85 ~~lP----hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t  160 (539)
T PF03137_consen   85 FALP----HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT  160 (539)
T ss_dssp             -----------------------------------------------------------------------SSS------
T ss_pred             Hhcc----HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence            7753    2221111          10  11112                   111122356788999999999999999


Q ss_pred             chhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc----------------------ccchHHHHH
Q 007612          174 NIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE----------------------GMWALGFWV  231 (596)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~----------------------~~~~~~f~~  231 (596)
                      ...+++=|..+++.      -+...|+++....+|.++|..+++.+.+.                      ..|+..|++
T Consensus       161 LG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli  234 (539)
T PF03137_consen  161 LGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLI  234 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHH
Confidence            99999999999888      77889999999999999999888866531                      127777777


Q ss_pred             HHHHHHHHHHHHHhcCcceecc
Q 007612          232 STGSAFAALVLFLAGTTRYRHF  253 (596)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~  253 (596)
                      .+.+.++..+-++.++|+.++.
T Consensus       235 ~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  235 CGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHcCCccCCCc
Confidence            7766666666666666665443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.09  E-value=2.9e-09  Score=113.77  Aligned_cols=156  Identities=12%  Similarity=0.142  Sum_probs=104.2

Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHHHH-HHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q 007612           62 VNLVLFLTRVLQQNNAEAANNVSKWT-GTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCG  140 (596)
Q Consensus        62 ~~l~~yl~~~lg~~~~~~~~~~~~~~-~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (596)
                      .+.+.|+.+++|+++.+.+++.+... ++..++.+++|++.||+ |||+.+.++.++..+..+.+......+        
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~--------  300 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP--------  300 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence            34455777889999999999886654 45788999999999997 999988777666555543332211101        


Q ss_pred             CCCCCCCCCCchhHHHHHHHHH----HHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhh
Q 007612          141 NELTPCGTHSSLEICLFYLSIY----FVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTIL  216 (596)
Q Consensus       141 ~~~~~~~~~~~~~~~~l~~~~~----l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~  216 (596)
                                 .+.+.+++..+    ..|++.+...+....++.+.+|.++      +    ++++...++|..+++.++
T Consensus       301 -----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~~~~~  359 (402)
T PRK11902        301 -----------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYVGPTS  359 (402)
T ss_pred             -----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHHHHHH
Confidence                       11333443333    3455555666666667777666544      3    444445567776666789


Q ss_pred             hhhcccccchHHHHHHHHHHHHHHHHHHhcC
Q 007612          217 GYFEDEGMWALGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       217 g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  247 (596)
                      |++.+..||+..|.+.+++.+++.++.+...
T Consensus       360 G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~  390 (402)
T PRK11902        360 GYLVEAYGWPGFYLMTVVIALPGLALLWLMR  390 (402)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999988877766665554433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.09  E-value=9.8e-10  Score=118.49  Aligned_cols=162  Identities=17%  Similarity=0.065  Sum_probs=121.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.++..++..++....++....+.+.|.+..++ ++.+.++..+...++..++.++.|+++||+ |||+++.++.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            455666666677766666655555555555555 566677788888899999999999999997 999999999888877


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccc-ccccchhhHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDA-KEGHSKVAFFS  199 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~  199 (596)
                      +.+++.+.   +                   .+...+++..++.|++.+...+...++++|..|.++. ...+.++..++
T Consensus       300 ~~~~~~~~---~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  357 (437)
T TIGR00792       300 GYLIFFFA---G-------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS  357 (437)
T ss_pred             HHHHHHHc---c-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence            77666554   1                   1245566677788899998889999999998764321 01112688999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccch
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWA  226 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~  226 (596)
                      +++....+|..+++.+.|++.+..||.
T Consensus       358 ~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       358 VRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999988766663

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00896 CynX cyanate transporter

Probab=99.09  E-value=2.7e-09  Score=111.84  Aligned_cols=153  Identities=15%  Similarity=0.067  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.++...+..++....++.+..++|.|+++ .|.+..+.+...+...++..++.++.|+++||+.+||+.+.++.++.++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            445666666667777888888999999975 7999999999999999999999999999999963466677777777777


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCc-cccccccchhhHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDE-EDAKEGHSKVAFFS  199 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~  199 (596)
                      +.+.+.+.   ++                    .... ....+.|++.|...|...+.+.+..++ +.      ++..++
T Consensus       276 ~~~~~~~~---~~--------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~  325 (355)
T TIGR00896       276 GLCGLLFA---PM--------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ------AAALSA  325 (355)
T ss_pred             HHHHHHHh---hh--------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH------HHHHHH
Confidence            76666554   11                    1111 134678899999888887877766554 44      778888


Q ss_pred             HHHHHHhHHHHHHhhhhhhhccccc
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGM  224 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~  224 (596)
                      +.+...++|..++|.+.|++.++.|
T Consensus       326 ~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       326 MAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888889999999999999988765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.08  E-value=4.7e-09  Score=110.82  Aligned_cols=162  Identities=11%  Similarity=0.102  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      .++...+........++....+.|.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ |||+.+.++..+..++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~  285 (385)
T TIGR00710       207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS  285 (385)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            344445555555666677777888888889999999999999999999999999999999997 9999998887777777


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      .+++......+.                  .....+++..++.|++.+...+.......|..| +.      |+++.+++
T Consensus       286 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~  340 (385)
T TIGR00710       286 AVLLEITAILGL------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALF  340 (385)
T ss_pred             HHHHHHHHHhcc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHH
Confidence            666655421110                  123445555667888888888888888888876 45      78889987


Q ss_pred             HHHHhH-HHHHHhhhhhhhcccccchHHHH
Q 007612          202 YLALNL-GSLFSNTILGYFEDEGMWALGFW  230 (596)
Q Consensus       202 ~~~~~l-g~~~~~~i~g~l~~~~~~~~~f~  230 (596)
                      +..... |++.+| +.+.+.+..+|...+.
T Consensus       341 ~~~~~~~g~i~~~-~~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       341 GTLRLVLGAIVGY-LVSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHH-HHHhccccChHHHHHH
Confidence            776654 555555 4555555444544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.06  E-value=4.2e-09  Score=115.44  Aligned_cols=167  Identities=15%  Similarity=0.122  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 007612           48 LNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSL  127 (596)
Q Consensus        48 ~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~  127 (596)
                      ...+..++....+...+|.+.++.+|.++...|++.+.+.++..++.++.+++.+|+ ++++.+..+.++++++.+.+++
T Consensus       225 ~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal  303 (524)
T PF05977_consen  225 LRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLAL  303 (524)
T ss_pred             HHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhc
Confidence            333344444445556688888899999999999999999999999999999999996 9999988888888888887777


Q ss_pred             hhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhH
Q 007612          128 SSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNL  207 (596)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  207 (596)
                      +                       .+.+..++..++.|++.........+.+.+..|++.      ||+.++++++....
T Consensus       304 ~-----------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~g  354 (524)
T PF05977_consen  304 S-----------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFFG  354 (524)
T ss_pred             c-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHHH
Confidence            6                       236777778888999988888888999999999999      99999999999999


Q ss_pred             HHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHH
Q 007612          208 GSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       208 g~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      +..+|.++.|.+.+..|-+.++.+.++..++..++..
T Consensus       355 ~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  355 GMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888877765555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.06  E-value=2.9e-09  Score=117.03  Aligned_cols=154  Identities=11%  Similarity=-0.009  Sum_probs=128.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.+...+...++....+++...++|.|+++.+|.++.+++.......++..++.+++|++.||+ |+|+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            4555666677777777888888999999999999999999999999999999999999999997 999999888888777


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +..++.....                    ..+.+...+..++.|+|.|...+.....+.+..|+++      ++.+.++
T Consensus       338 ~~~~l~~~~~--------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~  391 (495)
T PRK14995        338 SFYGLAMTDF--------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAI  391 (495)
T ss_pred             HHHHHHHhcC--------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHH
Confidence            7766554311                    0124445667788899999998888999999999998      9999999


Q ss_pred             HHHHHhHHHHHHhhhhhhhcc
Q 007612          201 FYLALNLGSLFSNTILGYFED  221 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~  221 (596)
                      ++...++|+.+|+.+.|.+.+
T Consensus       392 ~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        392 ETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998754

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.04  E-value=2.6e-09  Score=116.78  Aligned_cols=156  Identities=14%  Similarity=0.088  Sum_probs=128.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.++..++..+.....+++...++|.|+++.+|.++.++++......++..++.++.|++.||+ |||+.+.++..+..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            4455666777777788888888999999999999999999999999999999999999999997 999999998888877


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +..++.+... ++                  .+...++...++.|+|.+...+.......+.+|+++      |+++.++
T Consensus       334 ~~~~~~~~~~-~~------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~  388 (485)
T TIGR00711       334 GFYWRAFTFT-PD------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSL  388 (485)
T ss_pred             HHHHHhccCC-CC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHH
Confidence            7776653211 11                  224555666778899998888777788888889888      9999999


Q ss_pred             HHHHHhHHHHHHhhhhhhhccc
Q 007612          201 FYLALNLGSLFSNTILGYFEDE  222 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~  222 (596)
                      ++...++|+.+|+.+.+.+.++
T Consensus       389 ~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       389 SNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.02  E-value=1.5e-08  Score=110.67  Aligned_cols=164  Identities=13%  Similarity=0.065  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 007612           59 GVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRG  138 (596)
Q Consensus        59 ~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (596)
                      .+..+.|.+ .+..|.+..+..+......+...++.+++|+++||+ |||+.++++.++.+++.+++......+.     
T Consensus       289 ~~~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~-----  361 (479)
T PRK10077        289 VVLYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA-----  361 (479)
T ss_pred             HHHHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc-----
Confidence            334444444 456888877777777777888899999999999997 9999999999888888777664411010     


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHHHhccc-cccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhh
Q 007612          139 CGNELTPCGTHSSLEICLFYLSIYFVALGNGG-YQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILG  217 (596)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g  217 (596)
                                   ... ....+.++.+.+.+. ..|...++++|.+|++.      |++++++.+...++|.++++.+.+
T Consensus       362 -------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p  421 (479)
T PRK10077        362 -------------PGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFP  421 (479)
T ss_pred             -------------ccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhH
Confidence                         111 222333344443332 34778899999999998      999999998888888888755544


Q ss_pred             ------hhcccccchHHHHHHHHHHHHHHHHHHhcCcc
Q 007612          218 ------YFEDEGMWALGFWVSTGSAFAALVLFLAGTTR  249 (596)
Q Consensus       218 ------~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  249 (596)
                            ++.+..+|++.|++.++..+++.++.+...++
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  459 (479)
T PRK10077        422 MMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  459 (479)
T ss_pred             HHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcccc
Confidence                  44467788888888776655555554444443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.00  E-value=6.3e-09  Score=114.63  Aligned_cols=170  Identities=14%  Similarity=0.068  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH------------HHHHHHHHHHHHhhhHHHHhhhccCchHHHHH
Q 007612           46 ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAAN------------NVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAI  113 (596)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~------------~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~  113 (596)
                      .....++..+.+|++..+.|.+++ .+|++..+.+.            ......++..++.++.++++||+ |||+++++
T Consensus       293 ~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~  370 (502)
T TIGR00887       293 TAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLM  370 (502)
T ss_pred             HHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHH
Confidence            334445566778888888888885 67876543221            12233445556778899999997 99999988


Q ss_pred             HHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccc
Q 007612          114 FQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHS  193 (596)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  193 (596)
                      +..+.+++..++++.....+                  . ...+....+...++..+..+..+.+.+|.+|++.      
T Consensus       371 ~~~~~~~~~~~l~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------  425 (502)
T TIGR00887       371 GFFILTVLFFVLGFAYNHLS------------------T-HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------  425 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhcc------------------h-hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------
Confidence            88777777666655411000                  0 1111111112222223345667788899999999      


Q ss_pred             hhhHHHHHHHHHhHHHHHHhhhhhhhccc----------ccchHHHHHHHHHHHHHHHH
Q 007612          194 KVAFFSYFYLALNLGSLFSNTILGYFEDE----------GMWALGFWVSTGSAFAALVL  242 (596)
Q Consensus       194 r~~~~~~~~~~~~lg~~~~~~i~g~l~~~----------~~~~~~f~~~~~~~~~~~~~  242 (596)
                      |+++.++.+....+|++++|.+.+++.+.          .++...|++.++..+++.+.
T Consensus       426 R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       426 RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988773          23445666665555544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.99  E-value=3.1e-08  Score=105.61  Aligned_cols=166  Identities=9%  Similarity=-0.045  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.++...+..++....+++...++++++.+++|++..+.+.+.....++..++.++.|++.||. +|+ .++.+..+..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~  293 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHH
Confidence            4455555555565566666667765555567899999999999999999999999999999994 544 44444333333


Q ss_pred             H-HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          121 G-LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       121 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      . .++....                       .+.+.+.+..++.|++.+...+...+++.+..|+ +      +++..+
T Consensus       294 ~~~~l~~~~-----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~  343 (394)
T PRK10213        294 SALVLTLWG-----------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGS  343 (394)
T ss_pred             HHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHH
Confidence            3 3333332                       1255666777888999999999899899888873 3      446667


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHH
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFA  238 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~  238 (596)
                      ++....++|..+||.++|++.+..|++..++..+++.++
T Consensus       344 ~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        344 IQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence            777778899999999999999989998888877654433

>PRK10133 L-fucose transporter; Provisional

Probab=98.98  E-value=1.5e-08  Score=109.62  Aligned_cols=163  Identities=12%  Similarity=0.058  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 007612           44 IIILLNQGLATLAFFGVGVNLVLFL-TRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGL  122 (596)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~  122 (596)
                      +...+..++.....++...+++.|+ ++.+|+++.++++....+.++..++.+++|++.||+ |||+++..+.++.+++.
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence            3344444555566666777888886 567899999999999999999999999999999997 99999988877666555


Q ss_pred             HHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHH
Q 007612          123 VLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFY  202 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  202 (596)
                      .+..+.   +.                    . ..+....+.|++.+...|...+...+.+|++.       +.+.++..
T Consensus       340 ~~~~~~---~~--------------------~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~  388 (438)
T PRK10133        340 LISAFA---GG--------------------H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIV  388 (438)
T ss_pred             HHHHHc---CC--------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHh
Confidence            444433   11                    1 12445667899999999999999999987643       24444443


Q ss_pred             HHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHH
Q 007612          203 LALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAA  239 (596)
Q Consensus       203 ~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~  239 (596)
                      . ..+|+.++|.+.|++.+..| -+..|++..+..+..
T Consensus       389 ~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        389 M-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             H-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            3 33678888889999988877 678887665544433

>PRK10054 putative transporter; Provisional

Probab=98.98  E-value=8e-09  Score=110.19  Aligned_cols=173  Identities=17%  Similarity=0.021  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRV--LQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      .++......++....+.....+++.|+...  .+.+....++..+...+......++.|++.||+ ++|+.+.++.++..
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~  285 (395)
T PRK10054        207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV  285 (395)
T ss_pred             eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence            444444555555555555555666776533  455566667777777777777778889999997 99999988887777


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ++...+.+..                      ++.+.+.+..++.++|.+...|...+++.+..|++.      |++.++
T Consensus       286 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~  337 (395)
T PRK10054        286 IGLVGFIFSG----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFS  337 (395)
T ss_pred             HHHHHHHHcc----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHh
Confidence            7776665431                      124556667788899988888888899999999888      888887


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHH
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      ..+ ...+|..+||.++|++.++.|....|++.+...+++.++.+
T Consensus       338 ~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        338 AQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            654 56689999999999999999988888776655555544443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.97  E-value=1.4e-08  Score=108.42  Aligned_cols=151  Identities=13%  Similarity=0.076  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCC
Q 007612           60 VGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGC  139 (596)
Q Consensus        60 ~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (596)
                      ...++|.|+++..+ ++.+.+++.+...++...+..+.+++.||..+.++.+..+..+..++..++++.   +       
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---~-------  295 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---S-------  295 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---h-------
Confidence            45677888876655 667788887777766665555556666653366777777777777776666655   1       


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhh
Q 007612          140 GNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYF  219 (596)
Q Consensus       140 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l  219 (596)
                                   +...+.+...+.+++.+...|...+++.+..|++.      |++.+++++...++|..+||.++|++
T Consensus       296 -------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        296 -------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWL  356 (400)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHH
Confidence                         24445556677788888888999999999999998      99999999999999999999999999


Q ss_pred             cccc---c-chHHHHHHHHHHHHHH
Q 007612          220 EDEG---M-WALGFWVSTGSAFAAL  240 (596)
Q Consensus       220 ~~~~---~-~~~~f~~~~~~~~~~~  240 (596)
                      .+..   + ....|+...+..++..
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~  381 (400)
T PRK11646        357 FDLGKALNQPELPWMMLGIIGLITL  381 (400)
T ss_pred             HHHHhhcCCcchHHHHHHHHHHHHH
Confidence            8764   2 2445554444433333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.96  E-value=3.3e-09  Score=110.23  Aligned_cols=144  Identities=22%  Similarity=0.249  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQN-NAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~-~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      +|......++....++....+++.|+.+.+|.+ ..+.+...+...+...++.++.|+++||+ |+|+...+......++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILG  286 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence            344455555555667778889999988999999 79999999999999999999999999997 9888888777776766


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      .+.+.+....                    .+....+...++.|++.+...+...+++.+.+|++.      |+++.++.
T Consensus       287 ~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~  340 (352)
T PF07690_consen  287 ALGLLLLPFS--------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLF  340 (352)
T ss_dssp             HHHHCCSHHH--------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHH
T ss_pred             HHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHH
Confidence            6666554221                    135566667778899999999999999999999998      99999999


Q ss_pred             HHHHhHHHHHHh
Q 007612          202 YLALNLGSLFSN  213 (596)
Q Consensus       202 ~~~~~lg~~~~~  213 (596)
                      +...++|+.+||
T Consensus       341 ~~~~~~~~~igP  352 (352)
T PF07690_consen  341 NSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC
Confidence            999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.94  E-value=3.7e-08  Score=105.77  Aligned_cols=185  Identities=15%  Similarity=0.026  Sum_probs=123.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +..|++++..++....|.+...++|.|+++.+  +.........+..+...+..|++|+++||+ |++|++.++.+...+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            35788999898888888888889999988755  333333334455677889999999999997 999999988877666


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccc-------------
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEED-------------  187 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-------------  187 (596)
                      +...+.+..  |.               ....+...+.+..+...++.|.-..++..++.+.+|++.             
T Consensus       329 ~~~~~~l~l--p~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~  391 (462)
T PRK15034        329 FSALLFLTL--PG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ  391 (462)
T ss_pred             HHHHHHHHh--cc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence            654433331  11               001234555554444445555555666677777776410             


Q ss_pred             --cccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHHHHHHHh
Q 007612          188 --AKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE-GMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       188 --~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~-~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                        +..++.-+...|+......+|+.+-|.+.|...+. .++...|+...+..+++..+.+.
T Consensus       392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence              00111256778888888899999999887777655 45788888777666655555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.94  E-value=1.9e-08  Score=121.99  Aligned_cols=164  Identities=12%  Similarity=0.035  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNA-EAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~-~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      +.++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++.+.++.++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~  310 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA  310 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence            4455555555555556666778899999999999998 999999999999999999999999997 99998888887777


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ++.+++.+.                       .+...++++.++.|++.++..+...+++.+.+|++.      |+++++
T Consensus       311 ~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~  361 (1146)
T PRK08633        311 LSLFLLPTA-----------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLA  361 (1146)
T ss_pred             HHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhH
Confidence            777666655                       125666777788899999888899999999999998      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcc-cccchHHHHHHHH
Q 007612          200 YFYLALNLGSLFSNTILGYFED-EGMWALGFWVSTG  234 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~-~~~~~~~f~~~~~  234 (596)
                      +.++..++|.++++.+++.+.. .+++...|++.+.
T Consensus       362 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        362 ANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999888877776543 2344445554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.93  E-value=1.5e-08  Score=104.50  Aligned_cols=172  Identities=14%  Similarity=0.078  Sum_probs=137.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.+...+++.+..+=+.-++......|....+|++..+...+.....+...++++++|+|.||+ |.|+++++++++..+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence            3666677777777666667778888899999999999999999999999999999999999997 999999999887777


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      ..+...+..                       ....+.+.-.+.|+..|+.++..-++.++.+|+++      -++.||+
T Consensus       331 ~~~~~~~~~-----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFgl  381 (438)
T COG2270         331 AALYLIFLE-----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGL  381 (438)
T ss_pred             HHHHHHHcc-----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeeh
Confidence            665555441                       13335555578899999999999999999999998      7899999


Q ss_pred             HHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHHHHH
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAALVL  242 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~~~~  242 (596)
                      |++.......+||+..+.+.+.+| -|..+....+..++++++
T Consensus       382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            999999999999999998887654 455544444444444443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.92  E-value=4e-08  Score=103.68  Aligned_cols=167  Identities=14%  Similarity=-0.063  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCch---HHHHH-HHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRF---KTCAI-FQG  116 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~---~~l~~-~~~  116 (596)
                      +.+|.+....++....+|++..|+|.|+++ .|++.. .+...+...+...+   ..++++||. .||   +.... ...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~---g~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLI---GVAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHH---HHHHhhHHh-hhhhhHHHHHHHHHH
Confidence            567888899999999999999999999964 678764 45554444444444   457888885 543   33232 333


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      +.++....+.+.   .                    +....++...+.+++.....+...++.+|.+|++.      |++
T Consensus       266 ~~a~~~~~~~~~---~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt  316 (368)
T TIGR00903       266 LIAAFFLALAFE---L--------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGK  316 (368)
T ss_pred             HHHHHHHHHHHc---c--------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCc
Confidence            333333333322   1                    12233444455667677777778899999999999      999


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHH
Q 007612          197 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFL  244 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~  244 (596)
                      +.++.+...++|+.++|++.+.+..  +....|.+.++..+++.+..+
T Consensus       317 ~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       317 AAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887763  666777766666555555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.92  E-value=6.5e-07  Score=91.34  Aligned_cols=155  Identities=13%  Similarity=0.044  Sum_probs=104.3

Q ss_pred             HHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCC
Q 007612           69 TRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGT  148 (596)
Q Consensus        69 ~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (596)
                      .+++|++..+.+.+.........+..++.|.++||+ |||+.+++.+++.+++.+..-.                     
T Consensus        61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~---------------------  118 (354)
T PF05631_consen   61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS---------------------  118 (354)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc---------------------
Confidence            357899999999999999999999999999999997 9999999999888887754322                     


Q ss_pred             CCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHH-HHHhHHHHHHhhhhhhhccccc--c
Q 007612          149 HSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFY-LALNLGSLFSNTILGYFEDEGM--W  225 (596)
Q Consensus       149 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lg~~~~~~i~g~l~~~~~--~  225 (596)
                         .++..++++|++.|++.....++--+.+.....++.- +..-.+.-++... ....+-++++..++-++.+..+  .
T Consensus       119 ---~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~-~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~  194 (354)
T PF05631_consen  119 ---SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGF-PQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP  194 (354)
T ss_pred             ---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC
Confidence               2488899999999999999888777765332221110 0000233333222 1222223444444445555444  4


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCcc
Q 007612          226 ALGFWVSTGSAFAALVLFLAGTTR  249 (596)
Q Consensus       226 ~~~f~~~~~~~~~~~~~~~~~~~~  249 (596)
                      ..+|....+..+++.+++....++
T Consensus       195 vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  195 VAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             cchHHHHHHHHHHHHHHHHhcccc
Confidence            778888877766666655444443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.90  E-value=1.2e-08  Score=106.85  Aligned_cols=145  Identities=13%  Similarity=0.042  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH-HHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWT-GTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~-~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      .++...+..++....++...++++.|+++ +|+++.+.+.+.+... ++..++.+++|+++||+ |||+.+.++.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            46666666777788888888999999987 9999999998887765 56789999999999997 999999888877777


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +..+..+..+...          | .+ .+..+.+.+..+.++.+++.+...+...+++.+.+|++.      |++.+++
T Consensus       288 ~~~~~~~~~~~~~----------~-~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~  349 (356)
T TIGR00901       288 TNAGFVWLASNGH----------H-DG-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMAL  349 (356)
T ss_pred             HHHHHHHHHhcCc----------c-cc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHH
Confidence            6655544311000          0 00 011235667777788899999999999999999999999      9999999


Q ss_pred             HHHHHh
Q 007612          201 FYLALN  206 (596)
Q Consensus       201 ~~~~~~  206 (596)
                      ++...+
T Consensus       350 ~~~~~~  355 (356)
T TIGR00901       350 LSSLSA  355 (356)
T ss_pred             HHHHHh
Confidence            877655

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.89  E-value=2.5e-08  Score=120.79  Aligned_cols=184  Identities=11%  Similarity=-0.073  Sum_probs=132.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      .+.++..++..++....++++..++|.|+++.+|.++.+.+++.+.+.++..++.++.|+++|+. ++++.+.++.++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~  302 (1140)
T PRK06814        224 DKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMG  302 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHH
Confidence            35667777777777777778888999999999999999999999999999999999999999986 76666665555544


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCC-CCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTP-CGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      ++.+.+.+... ....+   +...-. .......+.+.++++.++.|++.+...+...+++.+.+|++.      |++++
T Consensus       303 ~~~~~l~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~  372 (1140)
T PRK06814        303 LFGLDLAFASS-SVPAE---PAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVI  372 (1140)
T ss_pred             HHHHHHHhccc-ccccc---cccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeee
Confidence            44443333200 00000   000000 000001234566677788899999999999999999999999      99999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhcc-cccchHHHHHHHH
Q 007612          199 SYFYLALNLGSLFSNTILGYFED-EGMWALGFWVSTG  234 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~-~~~~~~~f~~~~~  234 (596)
                      |..+....+|..+++++++.+.+ ..++...|++.++
T Consensus       373 g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        373 AANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            99999999999999999988863 4566666655443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.88  E-value=9.3e-08  Score=100.89  Aligned_cols=150  Identities=9%  Similarity=0.002  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      ..+..++..++.....+....+.+.++.+.+|+++.+.+...+...++..++.++.|+++||+ |||+++.++..+..+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        195 RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIM  273 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence            344445555555566666667777888888999999999999999999999999999999997 9999998887654443


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      .+.+..... .+                  .+.+...++..+.+.+.+...+.....+.|..| +.      +++..++.
T Consensus       274 ~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~  327 (377)
T PRK11102        274 GIWLVVSAL-LD------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLA  327 (377)
T ss_pred             HHHHHHHHH-Hh------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHH
Confidence            332222200 00                  123334444444455555555666667777766 55      77888875


Q ss_pred             HHH-HhHHHHHHhhhhhh
Q 007612          202 YLA-LNLGSLFSNTILGY  218 (596)
Q Consensus       202 ~~~-~~lg~~~~~~i~g~  218 (596)
                      +.. ..+|..+++++++.
T Consensus       328 ~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        328 GTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            543 45777777766543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.87  E-value=7.7e-08  Score=103.72  Aligned_cols=163  Identities=20%  Similarity=0.140  Sum_probs=131.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.++..+...++............+.|.+..+|.+ ...+.......+...++.++.++++||+ |+|+++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            45566666777777777767777777788888877 4567778888999999999999999997 999999999999999


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccc-cccchhhHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAK-EGHSKVAFFS  199 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~  199 (596)
                      +.+++.+...                     .+.+.+++..++.|++.+...+...++++|..+.++.+ .++..+..+|
T Consensus       303 ~~~~~~~~~~---------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s  361 (428)
T PF13347_consen  303 GFLLLFFLGP---------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS  361 (428)
T ss_pred             HHHHHHHHHh---------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence            9888887721                     34788888899999999999999999999999854321 1222578888


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccch
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWA  226 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~  226 (596)
                      .+.....+|..+++.+.+.+.+..||.
T Consensus       362 ~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  362 VNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            899999999999999998886655543

>PRK09848 glucuronide transporter; Provisional

Probab=98.84  E-value=3.7e-08  Score=106.82  Aligned_cols=163  Identities=10%  Similarity=0.075  Sum_probs=120.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.++..++..++....++......+.|+++.+|.++...++......++..++.++.++++||+ |+|+++.++.++.++
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4455566666666666666666677777878887766555544444667788899999999997 999999999888888


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccccc-ccchhhHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKE-GHSKVAFFS  199 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~  199 (596)
                      +.+++.+.   +.                  .+.+.+++..++.|+|.+...+...++.+|..|+++.++ ++.++..++
T Consensus       307 ~~~~~~~~---~~------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~  365 (448)
T PRK09848        307 GYLLFFWV---SV------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS  365 (448)
T ss_pred             HHHHHHHc---Cc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence            77766654   21                  235556677778899999999999999999987643111 111578889


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccc
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMW  225 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~  225 (596)
                      ++++...+|..+|+.+.+.+.+..||
T Consensus       366 ~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        366 LFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999998887665554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.84  E-value=1.6e-07  Score=100.12  Aligned_cols=156  Identities=9%  Similarity=-0.091  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccc
Q 007612           55 LAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLI  134 (596)
Q Consensus        55 ~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~  134 (596)
                      .........++.|+++.+|.++.+.+.+.+...++..++.++.|++.||+ ++++.+..+.+. .+..+.+.+.      
T Consensus       219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~------  290 (393)
T PRK11195        219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ------  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH------
Confidence            33444555667788889999999999999999999999999999999996 888888777533 3333333332      


Q ss_pred             cCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhh
Q 007612          135 RPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNT  214 (596)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~  214 (596)
                                       ++.+...+..++.|++.+...+...+.+.+..|++..     +++++++.+...++|..++..
T Consensus       291 -----------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~-----~g~~~a~~~~~~~~~~~~~~~  348 (393)
T PRK11195        291 -----------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVG-----AGHSIAVQNFNENLAMLLMLG  348 (393)
T ss_pred             -----------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCccccc-----chhHHHHHhHHHHHHHHHHHH
Confidence                             2245555667788899888888888888876544321     688999999999999999998


Q ss_pred             hhhhhcccccchHHHHHHHHHHHHHHH
Q 007612          215 ILGYFEDEGMWALGFWVSTGSAFAALV  241 (596)
Q Consensus       215 i~g~l~~~~~~~~~f~~~~~~~~~~~~  241 (596)
                      +.+.+ +..|-+..+++.....++.+.
T Consensus       349 ~~~~~-~~~~~~~~~~~~~~~~~~~~~  374 (393)
T PRK11195        349 LYSLL-VKLGVPVVAVIVGFGLLVALA  374 (393)
T ss_pred             HHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence            88866 456767777665544444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.83  E-value=7.1e-08  Score=103.33  Aligned_cols=186  Identities=15%  Similarity=0.057  Sum_probs=124.0

Q ss_pred             hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLA-FFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~-~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      +..++.+...+.+... ...+..+. ..+-+..|++..++.+..........++.+++.++.||+ |||+.++++...+.
T Consensus       269 ~~~~i~~~v~~~qq~sGi~ai~~Ys-t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  269 RPLLIGIVVSFAQQFSGINAIFFYS-TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMA  346 (485)
T ss_pred             HHHHHHHHHHHHHHhcCcceeHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHH
Confidence            4445555555554443 33444443 444457899999999999999999999999999999997 99999999999888


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHH---HHHHHHHHHHHhcc-ccccchhhhhhccCCccccccccchh
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEIC---LFYLSIYFVALGNG-GYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      +..+++.......+                 ....+   ..+++.++..++.+ +..|..+-+.+|.+|+..      |.
T Consensus       347 ~~~~~~~~~~~l~~-----------------~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~  403 (485)
T KOG0569|consen  347 VALLLMSIALFLSN-----------------SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RS  403 (485)
T ss_pred             HHHHHHHHHHHHHH-----------------HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hH
Confidence            88777766533222                 00011   12333333332222 346888999999999999      99


Q ss_pred             hHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceec
Q 007612          196 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRH  252 (596)
Q Consensus       196 ~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  252 (596)
                      .++++......+...+-......+.+..|- +.|++.++..++..+..+...|+.+.
T Consensus       404 aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  404 AAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence            999987776666666655555566665554 55555555555555555555555443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.83  E-value=9.3e-08  Score=100.49  Aligned_cols=181  Identities=10%  Similarity=0.050  Sum_probs=144.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQ---QNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQ  115 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~  115 (596)
                      +-|.+|.+.+...+....|+..-+..+.|.+..++   .++...|.+.+...+.-.+...+..++.+|+ |.|+.++++.
T Consensus       218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag  296 (412)
T PF01306_consen  218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAG  296 (412)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHH
Confidence            44678887777777777777777778889876543   3445567888888888888899999999996 9999999999


Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          116 GIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      .+.++=..+++++                       ++++.+.+...+.++-.+....+..-++.+.+|++.      .+
T Consensus       297 ~i~~iRi~~~~~~-----------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sA  347 (412)
T PF01306_consen  297 VIMAIRIIGSGFA-----------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SA  347 (412)
T ss_dssp             HHHHHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HH
T ss_pred             HHHHHHHHHHhhh-----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HH
Confidence            9988888888887                       237889999999999999999999999999999888      77


Q ss_pred             hHHHH-HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcc
Q 007612          196 AFFSY-FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTR  249 (596)
Q Consensus       196 ~~~~~-~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  249 (596)
                      +...+ ++....+|..+.+.++|++.|..|++..|++.+.++++..++..+..++
T Consensus       348 t~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  348 TLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence            88887 5778899999999999999999999999988777666555555554443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.82  E-value=4.7e-08  Score=106.76  Aligned_cols=176  Identities=16%  Similarity=0.114  Sum_probs=147.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCc--hHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGR--FKTCAIFQGIF  118 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr--~~~l~~~~~~~  118 (596)
                      +.++...+...+..++++.-..+++.|.+ ..|++..+++.+.++..+...++.++.|+++|+. ..  +.+..++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            67788888888888888888888998887 8999999999999999999999999999999995 63  33455555556


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .++.+.+.+.                       .++..++..-.+.|++.|.+.......+.|..+.++      ...++
T Consensus       376 gl~~~~~p~~-----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~  426 (509)
T KOG2504|consen  376 GLARLFLPFA-----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAY  426 (509)
T ss_pred             HHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHH
Confidence            6666556655                       237778888889999999998888899999999998      88999


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHHHHHHHhcC
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~  247 (596)
                      |+......++.++||.++|++.+..+ |...|+.+.+..+++..+.++.+
T Consensus       427 Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  427 GLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999999999999999998877 99999998877777765555444

>PRK11043 putative transporter; Provisional

Probab=98.82  E-value=3.4e-07  Score=97.62  Aligned_cols=153  Identities=10%  Similarity=0.061  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 007612           49 NQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLS  128 (596)
Q Consensus        49 ~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~  128 (596)
                      ........++....+.|.|++ +.|+++.+.++......++..++.++++++.||+ |+|+.+....+..+++.+.+.+.
T Consensus       211 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~  288 (401)
T PRK11043        211 IFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLA  288 (401)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555666677887775 5799999999888888888889999999999997 99987766655555544433322


Q ss_pred             hccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHH
Q 007612          129 SYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLG  208 (596)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  208 (596)
                      ...+.                  .+....++...+.+++.+...|...+...+..| +.      ++++.++++.....+
T Consensus       289 ~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~  343 (401)
T PRK11043        289 SLLSH------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGL  343 (401)
T ss_pred             HHhcc------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHH
Confidence            11011                  124445555667788888888888888777765 46      889999998888888


Q ss_pred             HHHHhhhhhhhcccccchHH
Q 007612          209 SLFSNTILGYFEDEGMWALG  228 (596)
Q Consensus       209 ~~~~~~i~g~l~~~~~~~~~  228 (596)
                      +.+++.+.|.+.+.......
T Consensus       344 ~~~~~~~~g~l~~~~~~~~~  363 (401)
T PRK11043        344 CFLASLLVSALISTPLLTTG  363 (401)
T ss_pred             HHHHHHHHHHccCCChhHHH
Confidence            88888888888765444433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.80  E-value=3.6e-07  Score=92.51  Aligned_cols=166  Identities=19%  Similarity=0.107  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +..|.+.....+++..+|.++.|+|.++. +.|+|..++|++.+...+......+.+-.+++|...+|+..+.....+.+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            45688888888999999999999999986 67999999999999999999999999999999876888888888889999


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      |.+.+.+.   |.                  .+.+.   ..++.|+|.|..+|....++.+..++.+.     -++..++
T Consensus       287 G~~G~~~~---P~------------------~~~~l---w~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgm  337 (395)
T COG2807         287 GLVGLLLA---PG------------------QLPIL---WALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGM  337 (395)
T ss_pred             HHHHHHHh---hh------------------hHHHH---HHHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHH
Confidence            98888877   33                  11222   24789999999999999999999865441     4555666


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccc-cchHHHHHHHHHH
Q 007612          201 FYLALNLGSLFSNTILGYFEDEG-MWALGFWVSTGSA  236 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~-~~~~~f~~~~~~~  236 (596)
                      -+-...+=+.+||++.|++.|.. +|+..++..+...
T Consensus       338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~  374 (395)
T COG2807         338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT  374 (395)
T ss_pred             hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence            66666677888999999998864 5777666554443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.80  E-value=2.8e-07  Score=98.02  Aligned_cols=177  Identities=14%  Similarity=0.060  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007612           46 ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLL  125 (596)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~  125 (596)
                      .++..++...+.-....+...|+++.-|.+....+.+.+...+.-...-.+.+++-.|+ |.|++++++.+..++=..+.
T Consensus       212 Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~  290 (400)
T PF03825_consen  212 FLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLY  290 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444556778898755447777777777777788888888999999997 99999999998888777777


Q ss_pred             HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHH-H
Q 007612          126 SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYL-A  204 (596)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~  204 (596)
                      +.... |.                 .......+....+.|+..|....+...++.+..|++.      |+++.+++.. .
T Consensus       291 a~~~~-~~-----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~  346 (400)
T PF03825_consen  291 AYFSD-PW-----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALS  346 (400)
T ss_pred             HHhcC-Cc-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHH
Confidence            66522 11                 0012223344567999999999999999999999999      9999999776 5


Q ss_pred             HhHHHHHHhhhhhhhcccccch------HHHHHHHHHHHHHHHHHHhcC
Q 007612          205 LNLGSLFSNTILGYFEDEGMWA------LGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       205 ~~lg~~~~~~i~g~l~~~~~~~------~~f~~~~~~~~~~~~~~~~~~  247 (596)
                      ..+|..+|..++|++.+.+|-+      ..+.+.++..++..+++++..
T Consensus       347 ~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~f  395 (400)
T PF03825_consen  347 FGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILF  395 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6899999999999999877644      344444444444444444433

>TIGR00898 2A0119 cation transport protein

Probab=98.79  E-value=4.8e-08  Score=107.59  Aligned_cols=142  Identities=18%  Similarity=0.024  Sum_probs=101.8

Q ss_pred             hhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCC
Q 007612           71 VLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHS  150 (596)
Q Consensus        71 ~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (596)
                      .++.+..   .......+....+.++.++++||+ |||+.+.++.++..++.+++.+.   ++                 
T Consensus       352 ~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~---~~-----------------  407 (505)
T TIGR00898       352 NLGGNIY---LDLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFV---PV-----------------  407 (505)
T ss_pred             ccCCChH---HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHc---CC-----------------
Confidence            4555533   333344566778888999999997 99999999988888877766655   21                 


Q ss_pred             chhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHH
Q 007612          151 SLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFW  230 (596)
Q Consensus       151 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~  230 (596)
                       .......+..++.+++.+...+....+.+|.+|++.      |++++++.+....+|++++|.+.+ +. ..++..+++
T Consensus       408 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~  478 (505)
T TIGR00898       408 -DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLV  478 (505)
T ss_pred             -CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHH
Confidence             112334444455566666777888899999999999      999999999999999999999988 43 355666777


Q ss_pred             HHHHHHHHHHHHHHh
Q 007612          231 VSTGSAFAALVLFLA  245 (596)
Q Consensus       231 ~~~~~~~~~~~~~~~  245 (596)
                      +.++..+++.++.++
T Consensus       479 ~~~~~~~~~~~~~~~  493 (505)
T TIGR00898       479 LFGGLALLAGILTLF  493 (505)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            666555555444433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.74  E-value=3.6e-07  Score=97.10  Aligned_cols=70  Identities=16%  Similarity=0.083  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 007612           58 FGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLS  128 (596)
Q Consensus        58 ~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~  128 (596)
                      .....+.+.|+.+++|+++.+.+...+...++..++.++.|++.||+ |||+.+.++..+..++.+.+.+.
T Consensus       220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445567788888999999999999999999999999999999997 99999999988888777776665

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.74  E-value=1.3e-07  Score=103.36  Aligned_cols=165  Identities=13%  Similarity=-0.033  Sum_probs=116.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.++..+...++.+...+....+.+.|.+ +...+....+.+.+...++..++.++.++++||+ |+|+.++++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~-y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFT-YVIGDADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEE-EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            56666667777777766666555554444 3333556666777777788889999999999997 999999988877666


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccc-ccccchhhHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDA-KEGHSKVAFFS  199 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~  199 (596)
                      +.+.+.+....+                  ..+.+.+++..++.|++.+...+...++++|..|.++. ..++..+..+|
T Consensus       309 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s  370 (473)
T PRK10429        309 SCGVLLLMGLAA------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS  370 (473)
T ss_pred             HHHHHHHHhccC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence            655544321001                  12355666667788899999899999999999874321 11111456788


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccc
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMW  225 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~  225 (596)
                      +..+...+|..+++.+.|++.+..||
T Consensus       371 ~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        371 VQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            89999999999999999988766655

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.73  E-value=1.7e-07  Score=94.60  Aligned_cols=173  Identities=13%  Similarity=0.048  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--C-----------------CChHHHHHHHHHHHHHHHHHhhhHHHHh
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVL--Q-----------------QNNAEAANNVSKWTGTVYIFSLVGAFLS  101 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g-----------------~~~~~~~~~~~~~~~~~~i~~~~~G~la  101 (596)
                      |.-+++....+.....||+.+-......+...  |                 .+...----..+.++.-+-+.++.+++.
T Consensus       326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv  405 (528)
T KOG0253|consen  326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV  405 (528)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence            34455666677788888887654433332211  1                 1111111222334556677889999999


Q ss_pred             hhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhc
Q 007612          102 DSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGAD  181 (596)
Q Consensus       102 Dr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~  181 (596)
                      ||+ |||+++..+.+++.+.++++....+ ++                  ....+++++|++.    .+.+.+.+.+..|
T Consensus       406 erl-GRKkTMal~l~~f~iflfll~~c~~-rn------------------~~tvllf~arafi----sg~fqvaYvYtPE  461 (528)
T KOG0253|consen  406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-RN------------------AYTVLLFTARAFI----SGAFQVAYVYTPE  461 (528)
T ss_pred             HHh-cchhHHHHHHHHHHHHHHHHHHhcC-cc------------------hhHHHHHHHHHHH----hchheEEEEecCc
Confidence            996 9999999999999888877765522 22                  1134556666654    3445677899999


Q ss_pred             cCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 007612          182 QYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       182 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      .+|+..      |+++.|.......+|+++.|.|+ ...+..-.-.+++.. ...+++.++..+
T Consensus       462 VyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~-~~~ilagIavcf  517 (528)
T KOG0253|consen  462 VYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYG-ALFILAGIAVCF  517 (528)
T ss_pred             ccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHH-HHHHHHHHHhee
Confidence            999999      99999999999999999999888 333333333344443 333344444333

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.70  E-value=1.2e-07  Score=99.61  Aligned_cols=141  Identities=16%  Similarity=0.108  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      .++...+..++....++.+..+++.|+++.+|+++.+++...+...+...++.+++|+++||+ |||+.+..+......+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  304 (366)
T TIGR00886       226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG  304 (366)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence            455556666666666778888999999999999999999999999999999999999999997 9988887777666665


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      ..++.+... +                  ..+....++...+.+++.|...+...++..+.+| ++      +++..|+.
T Consensus       305 ~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~~  358 (366)
T TIGR00886       305 AFLVVLGLV-S------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGLV  358 (366)
T ss_pred             HHHHHhcCC-C------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHHH
Confidence            555544311 0                  0024444444555556666666677778888876 45      88999988


Q ss_pred             HHHHhHHH
Q 007612          202 YLALNLGS  209 (596)
Q Consensus       202 ~~~~~lg~  209 (596)
                      +...++|+
T Consensus       359 ~~~~~~g~  366 (366)
T TIGR00886       359 GAIGNLGG  366 (366)
T ss_pred             HHhccCCC
Confidence            87777663

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=1.5e-05  Score=84.88  Aligned_cols=100  Identities=9%  Similarity=0.013  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 007612           83 VSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIY  162 (596)
Q Consensus        83 ~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  162 (596)
                      .++......+.+++++.+.|+. |.|..+.++......-.+.+.+.                        |.+.++.+-+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~------------------------N~y~~yfssa  110 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP------------------------NSYYLYFSSA  110 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc------------------------chHHHHHHHH
Confidence            5666777788999999999996 99999999987766655544442                        3677889999


Q ss_pred             HHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHh
Q 007612          163 FVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSN  213 (596)
Q Consensus       163 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~  213 (596)
                      +.|+|.+.++.....++++..+++.      +.+..++.......+.++|.
T Consensus       111 llG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Gg  155 (461)
T KOG3098|consen  111 LLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGG  155 (461)
T ss_pred             HhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999998887      66666665555555555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.65  E-value=1.8e-06  Score=91.80  Aligned_cols=143  Identities=8%  Similarity=0.027  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccC
Q 007612           57 FFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRP  136 (596)
Q Consensus        57 ~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  136 (596)
                      ........+.|+++.+|.++.+.++.......+..++.++.+++.||+ |++....  .....++.+.+.......    
T Consensus       223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~----  295 (394)
T PRK11652        223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQS--VICCLLAGLLMWIPGWFG----  295 (394)
T ss_pred             HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHhc----
Confidence            333445567788888999999999988888888888999999999996 7433322  222222222211110000    


Q ss_pred             CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhh
Q 007612          137 RGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTIL  216 (596)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~  216 (596)
                                    ..+.+.++.+.++.+++.+...|...+...+.+| +.      +++..++.+...++|+.+++.++
T Consensus       296 --------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~~~~  354 (394)
T PRK11652        296 --------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAALLS  354 (394)
T ss_pred             --------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHHHHH
Confidence                          0124556677788889999999999999999886 45      78888999988999999999999


Q ss_pred             hhhcccccchH
Q 007612          217 GYFEDEGMWAL  227 (596)
Q Consensus       217 g~l~~~~~~~~  227 (596)
                      +++.+...+..
T Consensus       355 ~~~~~~~~~~~  365 (394)
T PRK11652        355 AMLPQTGQFSL  365 (394)
T ss_pred             HHccCCchHHH
Confidence            98876544443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.64  E-value=5.3e-07  Score=95.41  Aligned_cols=142  Identities=18%  Similarity=0.227  Sum_probs=104.5

Q ss_pred             ccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceee
Q 007612          391 MSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLS  470 (596)
Q Consensus       391 ~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (596)
                      +...+-.+-+++-++..    ++.+|.+        +.+.+..|+.+.++-++.+.+++                    +
T Consensus       411 ~~a~~~~gEI~~~ffs~----klI~kiG--------Hv~v~~lgLa~~~~Rf~~~S~L~--------------------n  458 (618)
T KOG3762|consen  411 VSALCHAGEILFYFFSF----KLIEKIG--------HVNVMYLGLACNVGRFLYYSYLQ--------------------N  458 (618)
T ss_pred             hhhhhccchHHHHHHHH----HHHHHhc--------ccceeeehhhHHHHHHHHHHHhc--------------------C
Confidence            33334444444444444    3445554        55678899999999999888764                    7


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC
Q 007612          471 IFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTS-ISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNK  549 (596)
Q Consensus       471 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~-~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~  549 (596)
                      +|..++.-++.|+..+..+.+.-+|+...+|++++.+++|+.... -.+|-.+|.++.|.+....               
T Consensus       459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f---------------  523 (618)
T KOG3762|consen  459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF---------------  523 (618)
T ss_pred             chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee---------------
Confidence            888888889999999999999999999999999999999998766 4678888888877665422               


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 007612          550 GHLDRFYFLLAGLTTVDFVVYIACAKWYKCI  580 (596)
Q Consensus       550 ~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~  580 (596)
                       +-...|+..++.+++.++++..+.+..+++
T Consensus       524 -g~~ttf~~~giAcl~~l~~~~~iq~~l~~~  553 (618)
T KOG3762|consen  524 -GARTTFRIFGIACLVTLALFISIQLLLKRR  553 (618)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence             224578888888888777776665554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.62  E-value=8.9e-07  Score=94.94  Aligned_cols=162  Identities=11%  Similarity=-0.026  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVL-QQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-g~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      ++..++..++......++.++++.|+.+.. +.+...++...+.+..+..++.+++|+++||+ ++||++.++.++..+.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            344444555555555567788999986532 45555556667777788899999999999996 9999998888777777


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      .++..+.   +.                    .. ......+.|++.+..+|+..++..+..+++.      +.....+ 
T Consensus       313 ~ll~~~~---~~--------------------~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~l-  361 (410)
T TIGR00885       313 CLGSIFA---GG--------------------HV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAGL-  361 (410)
T ss_pred             HHHHHHc---CC--------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHHH-
Confidence            6666654   11                    22 2455567788888888999999999998766      3223332 


Q ss_pred             HHHHhHHHHHHhhhhhhhcccc------cchHHHHHHHHHHH
Q 007612          202 YLALNLGSLFSNTILGYFEDEG------MWALGFWVSTGSAF  237 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g~l~~~~------~~~~~f~~~~~~~~  237 (596)
                      .++ .+|+.+.|.+.|++.|..      +.+..|++...+.+
T Consensus       362 ~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       362 VMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             HHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            223 399999999999999853      57888887665543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09669 putative symporter YagG; Provisional

Probab=98.62  E-value=5.6e-07  Score=97.55  Aligned_cols=158  Identities=16%  Similarity=0.071  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFL-TRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      ++.++...++.......... +..|+ +..++ ++...+.+.....+...++.++.++++||+ |||+.+.++.++.++.
T Consensus       231 ~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~  307 (444)
T PRK09669        231 WRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVIL  307 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-hhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence            34444444443333332223 33444 33333 333344555556677778889999999997 9999998887665544


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccc--ccccchhhHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDA--KEGHSKVAFFS  199 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~  199 (596)
                      .+.+.+.   +.                  ++...+++..++.|++.+...+...++++|..+.++.  ++++ .+..++
T Consensus       308 ~~~~~~~---~~------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~-~g~~~s  365 (444)
T PRK09669        308 SALIFFI---PP------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRL-DGLVFS  365 (444)
T ss_pred             HHHHHHh---Cc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCc-chHHHH
Confidence            3333322   11                  2356677777889999999999999999999874332  2221 467788


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccc
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMW  225 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~  225 (596)
                      .+.+...+|..+|+.++|++.+..||
T Consensus       366 ~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        366 TNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            89999999999999999988776666

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.61  E-value=1.4e-06  Score=77.20  Aligned_cols=133  Identities=16%  Similarity=0.129  Sum_probs=95.4

Q ss_pred             chhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHH
Q 007612          395 DILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQ  474 (596)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (596)
                      ..++.++..++.+++.+    |.+        +++.+..+..+..++.+.....                    .+.+..
T Consensus         7 ~~~~~~~~~~~~g~~~d----~~g--------~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~   54 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTD----RFG--------RKPVLLVGLFIFVLSTAMFALS--------------------SNITVL   54 (141)
T ss_pred             ehhHHHHHHhhHHHHHh----hcc--------hhHHHHHHHHHHHHHHHHHHHh--------------------ccHHHH
Confidence            34556666667765544    433        2334666666666666555442                    245566


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhH
Q 007612          475 VPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDR  554 (596)
Q Consensus       475 ~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~  554 (596)
                      ....++.+++.+...+..+.++.|.+|++.|++++|+.++...+|..+++.+.+.+.+                ..+++.
T Consensus        55 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~  118 (141)
T TIGR00880        55 IIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ----------------FLGWRA  118 (141)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------------ccchHH
Confidence            6777889999999999999999999999999999999999999999999999887653                123456


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc
Q 007612          555 FYFLLAGLTTVDFVVYIACAK  575 (596)
Q Consensus       555 ~f~~~a~i~~i~~~~~~~~~~  575 (596)
                      .|++.+.+.++..+..++..+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880       119 PFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             HHHHHHHHHHHHHHHHhhcCC
Confidence            777777777776666655443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.59  E-value=1.1e-06  Score=90.48  Aligned_cols=157  Identities=19%  Similarity=0.160  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIG  121 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~  121 (596)
                      .+++..+.+++.-...-++.++++.|+.+..|.+..+++..++.+..+..++..++-++..|+ ...|.+.+..++..+.
T Consensus       237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill  315 (422)
T COG0738         237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL  315 (422)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence            344444444554444556778999999988999999999999999999999999999999996 8889988887666665


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      ++...++.                       +.. .+.+.++.|+.++..+|++.++..+..|++.        +..|..
T Consensus       316 ~~~~~l~~-----------------------g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s~~  363 (422)
T COG0738         316 LLAVALIG-----------------------GVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGSGL  363 (422)
T ss_pred             HHHHHHhc-----------------------ChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------ccccee
Confidence            55555551                       122 3344567889999999999999999999555        222222


Q ss_pred             HHHHhHHHHHHhhhhhhhcccccchHHHHH
Q 007612          202 YLALNLGSLFSNTILGYFEDEGMWALGFWV  231 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~  231 (596)
                      -....+|+++-|++.|++.|..|-...+..
T Consensus       364 l~maivGGAiiP~l~G~i~d~~g~~~~~~~  393 (422)
T COG0738         364 LVMAIVGGAIIPPLQGVIADMFGIQLTFLI  393 (422)
T ss_pred             eeeheecchHHHHHHHHHHHhhhhHHHHHH
Confidence            234568999999999999999888877763

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.56  E-value=2.6e-06  Score=88.38  Aligned_cols=167  Identities=23%  Similarity=0.247  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhc
Q 007612           51 GLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSY  130 (596)
Q Consensus        51 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~  130 (596)
                      +..+..+++=-..+=+|--+.+|++..|...+...+..+..++..+.|++..|..+++++-.+++.+.+++..+..++..
T Consensus       218 ~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~  297 (403)
T PF03209_consen  218 FLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP  297 (403)
T ss_pred             HHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444333455678888999999999999999999999999999999886568899888999988888887777643


Q ss_pred             cccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHH
Q 007612          131 LFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSL  210 (596)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  210 (596)
                      .                    .+.+.+..+.+++|++.|.+.....+.+.|..++++      .+..+|.+...-.++..
T Consensus       298 ~--------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~G  351 (403)
T PF03209_consen  298 L--------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARG  351 (403)
T ss_pred             c--------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHH
Confidence            2                    237889999999999999999999999999998888      78999999998888888


Q ss_pred             HHhhhhhhhccc----------ccchHHHHHHHHHHHHHHHHH
Q 007612          211 FSNTILGYFEDE----------GMWALGFWVSTGSAFAALVLF  243 (596)
Q Consensus       211 ~~~~i~g~l~~~----------~~~~~~f~~~~~~~~~~~~~~  243 (596)
                      +|..++|.+.|.          .+|..+|.+-++..++++.+.
T Consensus       352 lg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  352 LGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            888888876542          346667776666655555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.48  E-value=4.8e-06  Score=82.11  Aligned_cols=170  Identities=14%  Similarity=0.114  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcc
Q 007612           52 LATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYL  131 (596)
Q Consensus        52 ~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~  131 (596)
                      ..+.+.|.+-.+- +.+++.+|+|..|...+.....++..++ ++.|.+.|++ |.+.++++|.+...+|..++.++-. 
T Consensus        13 ~~~Gt~Y~Fs~yS-~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~-   88 (250)
T PF06813_consen   13 LCSGTTYTFSAYS-PQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVS-   88 (250)
T ss_pred             HhcCcccchhhhh-HHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            3334556565444 4688999999999999999999998875 7889999997 9999999999999999988877622 


Q ss_pred             ccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHH
Q 007612          132 FLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLF  211 (596)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~  211 (596)
                                     +...+...+.+.+..++.+.+.+.+..++.....+.|| ++      ||++.++.-....+++.+
T Consensus        89 ---------------~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~------RG~vvgilk~~~GLSaai  146 (250)
T PF06813_consen   89 ---------------GRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RS------RGTVVGILKGFFGLSAAI  146 (250)
T ss_pred             ---------------CccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cc------cCceehhhhHHHHhHHHH
Confidence                           11222346677777777777766666776677778897 46      889999877777676665


Q ss_pred             HhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcC
Q 007612          212 SNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       212 ~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  247 (596)
                      =..+-..+.+.-.-...+.......++.++...+.+
T Consensus       147 ~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  147 FTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence            544444443332223333333333444444444433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.45  E-value=3.8e-06  Score=91.87  Aligned_cols=186  Identities=12%  Similarity=-0.013  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH----HHHHHHHHHHHHHHHhhhHH----HHhhhccCchHHH--H
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAE----AANNVSKWTGTVYIFSLVGA----FLSDSYWGRFKTC--A  112 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~----~~~~~~~~~~~~~i~~~~~G----~laDr~~Gr~~~l--~  112 (596)
                      ++.+++........+.-..+.++.|..+..+.+...    .+++.+...+...+.+++..    ++.||-.+.+...  .
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            333444444444555455566777776654443222    56777777777777776655    4555411333433  6


Q ss_pred             HHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccccccc
Q 007612          113 IFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGH  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  192 (596)
                      +|.++.+++...++++...              ...+...+.+.+++..++.++|.....|...+++.+..|++.     
T Consensus       354 ~G~~l~~~~~~~~~~~~~~--------------~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~-----  414 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWF--------------ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL-----  414 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhh--------------cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-----
Confidence            7777777777776653110              011123568889999999999999999999999999999999     


Q ss_pred             chhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCc
Q 007612          193 SKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTT  248 (596)
Q Consensus       193 ~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  248 (596)
                       |++.++++.....+|..+++.+.....+..+|...|...++.+++..+++++..|
T Consensus       415 -~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       415 -MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999988887777777888777766655555554444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.40  E-value=1.2e-07  Score=98.87  Aligned_cols=146  Identities=12%  Similarity=0.084  Sum_probs=114.6

Q ss_pred             ccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCce
Q 007612          389 ASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASS  468 (596)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (596)
                      +.++....+...++.|+.+.+.+|+    +        +.+.+.+|..+..++.+..++..                   
T Consensus        71 Gll~~vf~v~~~i~sPl~gyLadry----N--------R~~v~~vG~~iW~~Av~~~~fs~-------------------  119 (493)
T KOG1330|consen   71 GLLQTVFIVVFMIASPLFGYLADRY----N--------RKRVIAVGIFIWTLAVFASGFSN-------------------  119 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhc----C--------cceEEeeHHHHHHHHHHHHHHHH-------------------
Confidence            4455555677778889998775544    3        33458999999999988887642                   


Q ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC
Q 007612          469 LSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLN  548 (596)
Q Consensus       469 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~  548 (596)
                       ..|.+.+.-.+.|+|++...|..+++++|.+|++.|+++.+++++....|..+|......+.+.               
T Consensus       120 -~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~---------------  183 (493)
T KOG1330|consen  120 -HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL---------------  183 (493)
T ss_pred             -HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC---------------
Confidence             4566667779999999999999999999999999999999999999999998887666655432               


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 007612          549 KGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIE  581 (596)
Q Consensus       549 ~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~~  581 (596)
                      .+++++.|+..++++++..++.+++.++..++.
T Consensus       184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga  216 (493)
T KOG1330|consen  184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA  216 (493)
T ss_pred             ccceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence            223577899999999999888888777765443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.39  E-value=2.1e-06  Score=89.42  Aligned_cols=166  Identities=16%  Similarity=0.108  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhc---cCchHHHHH-HHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSY---WGRFKTCAI-FQG  116 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Gr~~~l~~-~~~  116 (596)
                      +.++.+..+.++..++.-.=.+++++|++ .+|.+.+-.+.+-....+...+.+|+.|..+||.   +||||.++. +..
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            56677777777777776666788899985 7899998888888888889999999999999983   377776554 455


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      ..+++.++.+++.   ++...-|.|+.+|   ........++++..+.=+.+-..+..+-++.+|....++      +-+
T Consensus       111 ~i~~~l~Lig~aa---Dig~~lgd~~~~~---~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~------~~~  178 (498)
T KOG0637|consen  111 LIAVSLFLIGYAA---DIGLLLGDNERKP---VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA------KKT  178 (498)
T ss_pred             HHHHHHhhhhhHh---hhhHHhcCCcccc---cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh------hhh
Confidence            6777888887773   3322223333333   233456667777777778887888999999999987666      333


Q ss_pred             -HHHHHHHHHhHHHHHHhhhhhhh
Q 007612          197 -FFSYFYLALNLGSLFSNTILGYF  219 (596)
Q Consensus       197 -~~~~~~~~~~lg~~~~~~i~g~l  219 (596)
                       +.+++...+.+|+.+|..++++.
T Consensus       179 ~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  179 RANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             ccchhHHHHHHhcceeeeeccccc
Confidence             88889999999999998777644

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.37  E-value=1.6e-05  Score=85.41  Aligned_cols=169  Identities=14%  Similarity=-0.011  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.++..++..++....++.+..+.|.++++.+|.+..+.++.......+..++..+.+++.++. ++++.+.....+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            5667777777777778888888889999999999999999988777788888888888776554 454544333333344


Q ss_pred             HHHHHHhhhc-cccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          121 GLVLLSLSSY-LFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       121 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      +..++..... .+                   ++....+++.++.++|.+...|+.....-  .+.+..     ++++.+
T Consensus       297 g~~l~~~~~~~~~-------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~a  350 (413)
T PRK15403        297 GLALLIVGNLLWP-------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVSA  350 (413)
T ss_pred             HHHHHHHHHHHcc-------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHHH
Confidence            4433332210 01                   12333566777888888888777775332  222211     667777


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHH
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAF  237 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~  237 (596)
                      +++.....+..+++...+++.+. +-.++|....++..
T Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~  387 (413)
T PRK15403        351 SLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence            87777777788888888887654 44566655544433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.34  E-value=1.7e-05  Score=85.99  Aligned_cols=208  Identities=15%  Similarity=-0.009  Sum_probs=142.9

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChH------H----HHHHHHHHHHHHHHHhhhHHHHhh
Q 007612           34 RAKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTR-VLQQNNA------E----AANNVSKWTGTVYIFSLVGAFLSD  102 (596)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~------~----~~~~~~~~~~~~~i~~~~~G~laD  102 (596)
                      +..+..|+.++.++..+++..++.+.+..+...|+.+ .++-++.      +    ..+....+.+...+.+++--++.+
T Consensus       251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~  330 (477)
T TIGR01301       251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR  330 (477)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999888888864 3443321      1    223344445555566777788899


Q ss_pred             hccC-chHHHHHHHHHHHHHHHHHHhhhcccc-ccCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHhccccccchhhhh
Q 007612          103 SYWG-RFKTCAIFQGIFVIGLVLLSLSSYLFL-IRPRGCGNELTPCGTHSS-LEICLFYLSIYFVALGNGGYQPNIATFG  179 (596)
Q Consensus       103 r~~G-r~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~g~g~g~~~~~~~~~~  179 (596)
                      |+ | ||++..++.++.++++....+.++.++ ..+    .|.|-.....+ ......++...+.|+..+.......+++
T Consensus       331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~  405 (477)
T TIGR01301       331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRY----YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALA  405 (477)
T ss_pred             Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc----ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence            96 8 467778898888888887776533111 000    00000000111 1135666777789999999999999999


Q ss_pred             hccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccccc--chHHHHHHHHHHHHHHHHHHhcCcce
Q 007612          180 ADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGM--WALGFWVSTGSAFAALVLFLAGTTRY  250 (596)
Q Consensus       180 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~  250 (596)
                      ++..+++.++    .|..+|++|....+...+.....|.+.+..|  -.+.+.+.++.++++.+..+...|+.
T Consensus       406 s~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~  474 (477)
T TIGR01301       406 SIRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP  474 (477)
T ss_pred             HHHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999864411    6899999999999999999887777544333  45677777777777777666666553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.33  E-value=0.00011  Score=77.28  Aligned_cols=156  Identities=17%  Similarity=0.135  Sum_probs=112.4

Q ss_pred             HHHHHHHHHh-hCCChHHHH-HHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCC
Q 007612           62 VNLVLFLTRV-LQQNNAEAA-NNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGC  139 (596)
Q Consensus        62 ~~l~~yl~~~-lg~~~~~~~-~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (596)
                      +++..|+.+. .|++..|.. -+.-..+-......++...+.|.. |-|++++++.+...+...++.+..          
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~----------   92 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT----------   92 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence            5677888876 899888864 344445556667778889999985 999999999888888877777762          


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhh
Q 007612          140 GNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYF  219 (596)
Q Consensus       140 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l  219 (596)
                                   +...+-+.-++.|++.+. -.+..+++-...|+++      --++.++...+.-+|-.++..++-.+
T Consensus        93 -------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQll  152 (412)
T PF01770_consen   93 -------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLL  152 (412)
T ss_pred             -------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         366677778888887766 3566677777777766      55777777777777777777666655


Q ss_pred             cc--cccchHHHHHHHHHHHHHHHHHHhcCc
Q 007612          220 ED--EGMWALGFWVSTGSAFAALVLFLAGTT  248 (596)
Q Consensus       220 ~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~  248 (596)
                      ..  ..++...+++......+++++.+++++
T Consensus       153 vs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  153 VSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            44  445667777777666666666555543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11462 putative transporter; Provisional

Probab=98.32  E-value=2.7e-05  Score=84.77  Aligned_cols=158  Identities=15%  Similarity=0.128  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 007612           45 IILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVL  124 (596)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~  124 (596)
                      .++...+...............|.+..+| ++...+.+...+.++..++.+++++++||+ |+|+.+..+..+.++..++
T Consensus       232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~  309 (460)
T PRK11462        232 IVGLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLA  309 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence            33333334433333333333333333344 334445667777888889999999999997 9988876554443333333


Q ss_pred             HHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccccccc-chhhHHHHHHH
Q 007612          125 LSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGH-SKVAFFSYFYL  203 (596)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~  203 (596)
                      +.+.   +.                  .+...+++..++.|++.+...+...++++|..+.++-++.+ .-+..++....
T Consensus       310 ~~~~---~~------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f  368 (460)
T PRK11462        310 MFFV---PM------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLF  368 (460)
T ss_pred             HHHh---ch------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHH
Confidence            3322   11                  12333444556667777777777788889887743211111 12444566667


Q ss_pred             HHhHHHHHHhhhhhhhcccccc
Q 007612          204 ALNLGSLFSNTILGYFEDEGMW  225 (596)
Q Consensus       204 ~~~lg~~~~~~i~g~l~~~~~~  225 (596)
                      ...+|..+|+.++|++.+..||
T Consensus       369 ~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        369 VLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            8888999998888877655454

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.27  E-value=3.1e-05  Score=77.39  Aligned_cols=145  Identities=23%  Similarity=0.286  Sum_probs=108.6

Q ss_pred             HHHHHHHHHhhCCCh--HHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCC
Q 007612           62 VNLVLFLTRVLQQNN--AEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGC  139 (596)
Q Consensus        62 ~~l~~yl~~~lg~~~--~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (596)
                      ...+.+. ...+.+.  ...++..+.+.+...++.++.|.++||+ |||+.+..+.....++.++..+...         
T Consensus        23 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------   91 (338)
T COG0477          23 PALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------   91 (338)
T ss_pred             HHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence            3444443 3445444  4778999999999999999999999997 9998888887665555555555411         


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCc-cccccccchhhHHHHHHH-HHhHHHHHHhhhhh
Q 007612          140 GNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDE-EDAKEGHSKVAFFSYFYL-ALNLGSLFSNTILG  217 (596)
Q Consensus       140 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~lg~~~~~~i~g  217 (596)
                                  .....+++.|...|++.+...+...+++.+.+|+ +.      |+...+.... ...+|..++|.+++
T Consensus        92 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T COG0477          92 ------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAG  153 (338)
T ss_pred             ------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        2377888899999999999999999999999987 45      8888888777 57888888887777


Q ss_pred             hhccc--ccchHHHHHHHHH
Q 007612          218 YFEDE--GMWALGFWVSTGS  235 (596)
Q Consensus       218 ~l~~~--~~~~~~f~~~~~~  235 (596)
                      .+...  .+|++.|.+....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         154 LLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHhcchHHHHHHHHHH
Confidence            66543  5788855554433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.24  E-value=2.8e-05  Score=82.89  Aligned_cols=159  Identities=19%  Similarity=0.167  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007612           44 IIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLV  123 (596)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~  123 (596)
                      ...++..++....+-...+...-|.+..+|.+.............+..++.++..++++|+ |+|+++.++.++.+++.+
T Consensus       239 ~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~~  317 (467)
T COG2211         239 LLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGYL  317 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHHH
Confidence            3333344444444333334445556667888888888888888888888899999999997 999999999999999999


Q ss_pred             HHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccc--ccccchhhHHHHH
Q 007612          124 LLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDA--KEGHSKVAFFSYF  201 (596)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~  201 (596)
                      ++.+.   +.                  .+..++++..++.++|.+...+..+++++|..+..+-  +.++ -|..++.+
T Consensus       318 ~~~f~---~~------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~-eGi~~s~~  375 (467)
T COG2211         318 LLYFT---PA------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRR-EGIVYSGM  375 (467)
T ss_pred             HHHhh---cC------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCc-hhhHHHHH
Confidence            88887   21                  4578888888999999999999999999999875432  2222 24555666


Q ss_pred             HHHHhHHHHHHhhhhhhhcccccc
Q 007612          202 YLALNLGSLFSNTILGYFEDEGMW  225 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g~l~~~~~~  225 (596)
                      ....=+|.+++..+.|++....||
T Consensus       376 tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         376 TFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            666677777777666666554443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.19  E-value=1.7e-05  Score=86.95  Aligned_cols=147  Identities=10%  Similarity=0.031  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCChH----HHHHHHHHHHHHHHHHhhhHHHHhhhccCchHH-------HHHHHHHHHHH
Q 007612           53 ATLAFFGVGVNLVLFLTRVLQQNNA----EAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKT-------CAIFQGIFVIG  121 (596)
Q Consensus        53 ~~~~~~~~~~~l~~yl~~~lg~~~~----~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~-------l~~~~~~~~~~  121 (596)
                      ....+......++.|.++..+.+..    ...++.+...+...+..++.|++.||. |+|+.       +.+|.++.+++
T Consensus       281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~  359 (489)
T PRK10207        281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLG  359 (489)
T ss_pred             HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHH
Confidence            3344444446677777643332211    124555555566778888899999997 88873       66777777766


Q ss_pred             HHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          122 LVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      .+.++.......        +     .....+.+.+...-++.|+|.++..|...+++.+..|++.      ++.+++++
T Consensus       360 ~~~~~~~~~~~~--------~-----~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g~~  420 (489)
T PRK10207        360 FLTAAAAGMWFA--------D-----AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILGMW  420 (489)
T ss_pred             HHHHHHHHHhhc--------C-----CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHHHH
Confidence            654432100000        0     0011346667777889999999999999999999999999      99999999


Q ss_pred             HHHHhHHHHHHhhhhhhh
Q 007612          202 YLALNLGSLFSNTILGYF  219 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g~l  219 (596)
                      +...++|..+|..++...
T Consensus       421 ~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        421 FLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999988777654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.18  E-value=4.5e-05  Score=84.00  Aligned_cols=177  Identities=12%  Similarity=0.008  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--hhCCCh------HHHHHHHHHHHHHHHHHhhhH----HHHhhhccCchHHHHHHH
Q 007612           48 LNQGLATLAFFGVGVNLVLFLTR--VLQQNN------AEAANNVSKWTGTVYIFSLVG----AFLSDSYWGRFKTCAIFQ  115 (596)
Q Consensus        48 ~~~~~~~~~~~~~~~~l~~yl~~--~lg~~~------~~~~~~~~~~~~~~~i~~~~~----G~laDr~~Gr~~~l~~~~  115 (596)
                      +..+.....+|.+....+.++..  ..+.+.      ...++..+...+...+..++.    +++.||+ +..+.+.++.
T Consensus       279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~  357 (500)
T PRK09584        279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGM  357 (500)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHH
Confidence            33445566677777777766553  111221      124556666666666666666    5666664 6667888899


Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          116 GIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      ++.+++.+.+.+.....+              .+...+.+.+....++.++|.++..|...+++.+..|++.      |+
T Consensus       358 ~l~~l~f~~l~~~~~~~~--------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg  417 (500)
T PRK09584        358 VLCSGAFLVLPLGAKFAN--------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MG  417 (500)
T ss_pred             HHHHHHHHHHHHHHHhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HH
Confidence            999999888777633111              1112345678888999999999999999999999999999      99


Q ss_pred             hHHHHHHHHHhHHHHHHhhhhhhhc----------ccccchHHHHHHHHHHHHHHHHHHh
Q 007612          196 AFFSYFYLALNLGSLFSNTILGYFE----------DEGMWALGFWVSTGSAFAALVLFLA  245 (596)
Q Consensus       196 ~~~~~~~~~~~lg~~~~~~i~g~l~----------~~~~~~~~f~~~~~~~~~~~~~~~~  245 (596)
                      +.+|.+.....+|..++..+.+...          ...++...|...++..++..+++++
T Consensus       418 ~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        418 FIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888788777766654321          0123566776655544433333333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=4.7e-06  Score=85.39  Aligned_cols=145  Identities=14%  Similarity=0.116  Sum_probs=115.7

Q ss_pred             ccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCce
Q 007612          389 ASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASS  468 (596)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (596)
                      +.+.....+..++..|+.+.+.+++..|.            -+.+|++++.++.+++++.+                   
T Consensus       109 G~LFaskA~~qllvnp~~G~l~~~iGy~i------------pm~~Gl~vmf~sTilFafg~-------------------  157 (464)
T KOG3764|consen  109 GLLFASKALVQLLVNPFFGNLIDRIGYKI------------PMVAGLFVMFLSTILFAFGN-------------------  157 (464)
T ss_pred             hHHHHHHHHHHHHhcccchhhHHHhcccc------------HHHHHHHHHHHHHHHHHHcc-------------------
Confidence            44444455666677777775555444443            49999999999999999853                   


Q ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCC
Q 007612          469 LSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGL-KSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNL  547 (596)
Q Consensus       469 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~-rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~  547 (596)
                       +.+.+++.-.+.|+|.++..+...+++++.+|++. ||+++|+...+..+|..+||.+.|.+.+..             
T Consensus       158 -sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-------------  223 (464)
T KOG3764|consen  158 -SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-------------  223 (464)
T ss_pred             -hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-------------
Confidence             56678888999999999999999999999999765 799999999999999999999999887643             


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 007612          548 NKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIE  581 (596)
Q Consensus       548 ~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~~  581 (596)
                         +++..|.+++.++++...+-+++.+.++..+
T Consensus       224 ---Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  224 ---GKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             ---CCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence               3445799999999999988888776655443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.15  E-value=2.1e-08  Score=108.73  Aligned_cols=187  Identities=15%  Similarity=0.066  Sum_probs=111.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.+...+..........+....+...++.+..+.++.  -.......+...++.+++.++.||+ |||++++++..+.++
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~  328 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI  328 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence            3445555555555444433344444445556676666  2333344556667777888999997 999999999888777


Q ss_pred             HHHHHH-hhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          121 GLVLLS-LSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       121 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      +.+.++ .....++              ..+..+...+............+..+....+.+|.+|++.      |.++.+
T Consensus       329 ~~~~~~~~~~~~~~--------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~  388 (451)
T PF00083_consen  329 CSLILGIIFFLGVS--------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIG  388 (451)
T ss_pred             cccccccccccccc--------------cccccccccceeeeeccccccccccccccccccccccccc------cccccc
Confidence            776665 1100011              0000011111111111112222445777788999999999      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcce
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRY  250 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  250 (596)
                      +.+....+++.+++.+...+.+..+-...|.+.++..++..+..++..|+.
T Consensus       389 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET  439 (451)
T PF00083_consen  389 LSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET  439 (451)
T ss_pred             cccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence            988888899999998888887766634455555554444444444444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.13  E-value=9.3e-05  Score=71.87  Aligned_cols=93  Identities=11%  Similarity=0.210  Sum_probs=69.1

Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCC
Q 007612           67 FLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPC  146 (596)
Q Consensus        67 yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (596)
                      |+.+.+|+...+.+.+.........++..+.|-++||- |||+.++..++..+++    ++..-                
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYiLs----CiTKh----------------  120 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYILS----CITKH----------------  120 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHHHH----HHhhc----------------
Confidence            45567888888888888777777888888899999996 9999887765544443    33322                


Q ss_pred             CCCCchhHHHHHHHHHHHHHhccccccchhhh-hhccCC
Q 007612          147 GTHSSLEICLFYLSIYFVALGNGGYQPNIATF-GADQYD  184 (596)
Q Consensus       147 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~-~~~~~~  184 (596)
                          ++++-.++++|++.|+..+..+++--+. ++|+.+
T Consensus       121 ----SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne  155 (454)
T KOG4332|consen  121 ----SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE  155 (454)
T ss_pred             ----CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence                2347789999999999998887776554 455553

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.12  E-value=9.3e-06  Score=88.19  Aligned_cols=165  Identities=13%  Similarity=0.077  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhc---cCchHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSY---WGRFKTCAIFQGI  117 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Gr~~~l~~~~~~  117 (596)
                      ..+|..++..++.....|++..|+|.|+++..|++..+++.+...+.++..++.+++|+++||.   ..+|........+
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~  352 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL  352 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            5789999999999999999999999999986779999999999999999999999999999993   1555555555444


Q ss_pred             HHH-HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          118 FVI-GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       118 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      ..+ +.+.+.....                       ......+.+....+.+...+.......+....+.+     |.+
T Consensus       353 ~~~~g~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k-----~~~  404 (495)
T KOG2533|consen  353 YAIIGAISLLAAAV-----------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK-----ALT  404 (495)
T ss_pred             HHHHHHHHHHhhcc-----------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchHH-----hHH
Confidence            333 3233332211                       22222222333344444455566666666654441     445


Q ss_pred             HHHHHHHHHhHHHHHHhhh-hhhhcccccchHHHHHHH
Q 007612          197 FFSYFYLALNLGSLFSNTI-LGYFEDEGMWALGFWVST  233 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i-~g~l~~~~~~~~~f~~~~  233 (596)
                      ..+.+..+.+.++.++|.+ .+.....++|...|....
T Consensus       405 ~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  405 TVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             HHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence            5555555665555555443 344445578888885444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.05  E-value=2.6e-05  Score=88.20  Aligned_cols=168  Identities=14%  Similarity=0.192  Sum_probs=108.1

Q ss_pred             CccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhcc-------
Q 007612          388 PASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVEC--YRLKYAKT-------  458 (596)
Q Consensus       388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~--~~~~~~~~-------  458 (596)
                      .+.+.+.+.++..+..++.+++.    +|.+        +++.+.+|.++++++.+++++..-  .+|+....       
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~~----~r~~--------r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~  137 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYFG----TKLH--------RPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL  137 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHhh----cccC--------cceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence            45566666777777777777554    4443        233488888888888887765431  12211100       


Q ss_pred             ------cC--------------CCCCCCc--eeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHH
Q 007612          459 ------EC--------------KHCEGAS--SLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSI  516 (596)
Q Consensus       459 ------~~--------------~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~  516 (596)
                            -|              ..|....  ...+..+++.-++.|+|.+...+...+++.|.+|++.|+.+.|+.+...
T Consensus       138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~  217 (633)
T TIGR00805       138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA  217 (633)
T ss_pred             cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence                  00              0000000  1234556678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccc------------CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 007612          517 SLGNYVSSLLLTMVMKISTE------------DHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIAC  573 (596)
Q Consensus       517 ~lg~~lg~~l~~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~  573 (596)
                      .+|..+|+.+.+.+.+...+            +.++.|      .+++...|++.+++.++.++.++++
T Consensus       218 ~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW------iGaWwl~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       218 VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW------IGAWWIGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH------HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999987754311            011111      1234455666677776665554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.04  E-value=0.00076  Score=70.90  Aligned_cols=61  Identities=21%  Similarity=0.140  Sum_probs=51.3

Q ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007612          470 SIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMV  530 (596)
Q Consensus       470 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i  530 (596)
                      +.|.+++..+..|+..+..+...+..+.+..|++.|..++|.....-.+|..++..+.-.+
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4566667778889999999998899999999999999999999988888888877665543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.01  E-value=1.8e-05  Score=86.35  Aligned_cols=136  Identities=7%  Similarity=-0.114  Sum_probs=106.3

Q ss_pred             HHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCC
Q 007612           69 TRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGT  148 (596)
Q Consensus        69 ~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (596)
                      ++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++.....+..+..++.          .+ 
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~----------~g-  347 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLA----------FG-  347 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccc----------cC-
Confidence            457899999999999999999999999999999996 999999999888877765543221111100          00 


Q ss_pred             CCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccccc
Q 007612          149 HSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGM  224 (596)
Q Consensus       149 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~  224 (596)
                      .  .+...++...++.+++.+........++.+..|++.      +++.++++....++|..+++.+++++.++.|
T Consensus       348 i--~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       348 I--SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             C--CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            0  112234445567778888888888999999999999      8999999999999999999999999988776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.99  E-value=5.6e-05  Score=60.28  Aligned_cols=68  Identities=15%  Similarity=0.013  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           48 LNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        48 ~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      ...++...+...+.++++.|++ +.|+|+.+.|.+.++..+...+++++.|+++||+ ||+|.++....+
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            3444455555667899999987 5999999999999999999999999999999997 888877665443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.96  E-value=2.4e-05  Score=83.11  Aligned_cols=173  Identities=10%  Similarity=-0.028  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007612           46 ILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLL  125 (596)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~  125 (596)
                      .++..+....+.-.+.+++--++ ++++..+.-.|........+-++.-++.+++-.|+ |+-+++.+++....+=.+..
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~  453 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYY  453 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHH
Confidence            44444444444445555554444 45565555556555556667777788899999996 99999999988877777766


Q ss_pred             HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHH-H
Q 007612          126 SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYL-A  204 (596)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~  204 (596)
                      .+.                       .|+|+.+..-+++|+..+..+.++.++++...|++.      |.++-++... .
T Consensus       454 S~L-----------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f  504 (618)
T KOG3762|consen  454 SYL-----------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIF  504 (618)
T ss_pred             HHh-----------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHh
Confidence            666                       348888899999999999999999999999999999      8888888544 5


Q ss_pred             HhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcc
Q 007612          205 LNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTR  249 (596)
Q Consensus       205 ~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  249 (596)
                      -.+|-.+|.+|+|.+...++-+-.|.+.++.+++.++....+.+.
T Consensus       505 ~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~  549 (618)
T KOG3762|consen  505 HGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLL  549 (618)
T ss_pred             cccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            589999999999999999998888988887777666665554443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.95  E-value=0.009  Score=64.64  Aligned_cols=161  Identities=15%  Similarity=0.084  Sum_probs=99.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHH-hhhHHHHhhhccCchHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQN-----NAEAANNVSKWTGTVYIF-SLVGAFLSDSYWGRFKTCAIF  114 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~-----~~~~~~~~~~~~~~~~i~-~~~~G~laDr~~Gr~~~l~~~  114 (596)
                      +.++......++....|+.+.     -++|.+..+     .....++.+...+...+. .++-+++++|+ +|++.+-+.
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~   80 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTV   80 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHH
Confidence            445555555555555554443     256777663     245566666655544444 78889999997 999998887


Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCC------ch---------hHHHHHHHHHHHHHhcccccc-chhhh
Q 007612          115 QGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHS------SL---------EICLFYLSIYFVALGNGGYQP-NIATF  178 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------~~~~l~~~~~l~g~g~g~~~~-~~~~~  178 (596)
                      ...+.+...++++... |.      .+..||+....      +.         +.|..-+.-+...+-.....+ .-+++
T Consensus        81 ~~~F~~~f~lF~~vl~-p~------~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~f  153 (472)
T TIGR00769        81 ISPFLGFFALFAFVIY-PL------SDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGF  153 (472)
T ss_pred             HHHHHHHHHHHHHHHh-cc------hhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777776666665522 22      12233321110      00         011111111222233333333 67899


Q ss_pred             hhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhc
Q 007612          179 GADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFE  220 (596)
Q Consensus       179 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~  220 (596)
                      +.|.+..++      -.+.+++++.+.|+|..+++.+..++.
T Consensus       154 andi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       154 ANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888      678999999999999999999888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.92  E-value=4e-05  Score=83.44  Aligned_cols=132  Identities=10%  Similarity=0.034  Sum_probs=87.0

Q ss_pred             hhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHH
Q 007612          397 LSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVP  476 (596)
Q Consensus       397 ~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (596)
                      ....+..++.+++.||+.   +        +++.+.+|.++.+++.+.++...                   .+...+..
T Consensus        56 ~~~~l~~ligG~LaDRil---G--------rrr~iliG~il~~lg~lll~~~~-------------------~~~~~~~l  105 (493)
T PRK15462         56 SLVYVTPILGGFLADKVL---G--------NRMAVMLGALLMAIGHVVLGASE-------------------IHPSFLYL  105 (493)
T ss_pred             HHHHHHHHHHHHHHHHcc---C--------cHHHHHHHHHHHHHHHHHHHHhh-------------------cchhHHHH
Confidence            344445555565544432   3        33457888888888876554311                   11122333


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhH
Q 007612          477 QYALIGASEVFMYVAQLEFFNAQAPDG--LKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDR  554 (596)
Q Consensus       477 ~~~l~g~~~~~~~~~~~~~~~~~~P~~--~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~  554 (596)
                      ...+..++.+...+...+++.|.+|++  .|.++.+++.+..++|+.++|.+.+.+.+                ..+++.
T Consensus       106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~----------------~~Gw~~  169 (493)
T PRK15462        106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE----------------EYSWAM  169 (493)
T ss_pred             HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh----------------hhChHH
Confidence            445555666776777788999999975  79999999999999999999999997754                224567


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 007612          555 FYFLLAGLTTVDFVVYIACA  574 (596)
Q Consensus       555 ~f~~~a~i~~i~~~~~~~~~  574 (596)
                      .|+..++.++++.+.+++..
T Consensus       170 ~F~iaaigm~l~li~~~~~~  189 (493)
T PRK15462        170 GFGLAAVGMIAGLVIFLCGN  189 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            88776665666555554433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.88  E-value=0.00028  Score=78.04  Aligned_cols=193  Identities=15%  Similarity=0.015  Sum_probs=107.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFF-GVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQG  116 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~  116 (596)
                      ..+|.....+....++.++-+ .+..+.+.. -+..|.+... .+...+..+...++..++.++.||+ |||+.++.+..
T Consensus       291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~  367 (513)
T KOG0254|consen  291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA  367 (513)
T ss_pred             chHHHHHHHHHHHHHHHHhCCceEEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence            344555556666666655543 333444444 4566666443 4555556667777888889999997 99999999999


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      .+.++.++++.......         .|.. .........+....+.......+..|..+.+.+|.+|.+.      |++
T Consensus       368 ~m~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~  431 (513)
T KOG0254|consen  368 GMSICLVILAVVGVFAL---------YYPN-SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSK  431 (513)
T ss_pred             HHHHHHHHHHHHHHHhc---------cCCC-cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hhh
Confidence            99999888876632111         0000 0011112222222222333334455777789999999999      888


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHH-HHHhcCcc
Q 007612          197 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALV-LFLAGTTR  249 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~  249 (596)
                      +.++......+...+-......+.+..++...|.+......+... .+++..++
T Consensus       432 ~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pE  485 (513)
T KOG0254|consen  432 GASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPE  485 (513)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEccc
Confidence            888744443333332222222232332234455554444444433 33444444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.77  E-value=3.5e-05  Score=80.53  Aligned_cols=180  Identities=12%  Similarity=0.020  Sum_probs=120.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH----HHHHH----HHHHHH-HhhhHHHHhhhccCchHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAAN----NVSKW----TGTVYI-FSLVGAFLSDSYWGRFKTC  111 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~----~~~~~----~~~~~i-~~~~~G~laDr~~Gr~~~l  111 (596)
                      +.++..+..-|+.-+.+|+...+...-+ +..|+.+.+...    -++..    .....+ +-.++.++.|++ |||++.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            5666666667777777777655444333 455554443222    12222    122222 445567889996 999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHH-HHHHHHhccccccchhhhhhccCCcccccc
Q 007612          112 AIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLS-IYFVALGNGGYQPNIATFGADQYDEEDAKE  190 (596)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  190 (596)
                      +.+..++.+..+.++..   ++          |      ..+...+++. -+.+-+++-+...+...+-+|.||++.   
T Consensus       382 ~~GF~~~~i~~~~~~~~---y~----------~------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv---  439 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGP---YN----------Q------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV---  439 (538)
T ss_pred             HhhHHHHHHHHHHHcCC---cc----------c------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH---
Confidence            99988888877776655   11          0      0111222222 223446666767777788899999999   


Q ss_pred             ccchhhHHHHHHHHHhHHHHHHhhhhhhhcc-----cccchHHHHHHHHHHHHHHHHHHhcC
Q 007612          191 GHSKVAFFSYFYLALNLGSLFSNTILGYFED-----EGMWALGFWVSTGSAFAALVLFLAGT  247 (596)
Q Consensus       191 ~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~-----~~~~~~~f~~~~~~~~~~~~~~~~~~  247 (596)
                         |+++-++...+.-.|+++|.....++.+     ..+.+.+|++.....+++.+..++++
T Consensus       440 ---R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  440 ---RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             ---hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence               9999999999999999999999899988     77889999998887777766555443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.67  E-value=0.08  Score=56.73  Aligned_cols=189  Identities=12%  Similarity=-0.034  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH-
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV-  119 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~-  119 (596)
                      |..+.+...+++.+++--++-.-.+.|+.+-+.-+---.+.....-.+...++.+..|...||. -|.+++..+.+.-- 
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~   80 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL   80 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence            4557788888888888888888888888765443333333333344566777888889999996 89888766654322 


Q ss_pred             ---HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHH-HHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          120 ---IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSI-YFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       120 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                         ++..++......+.            .+..++.....+++.. .+..+..=+......+.=-|+...=..++...+.
T Consensus        81 sv~~s~~~~~~l~~~~~------------~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La  148 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPS------------SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALA  148 (432)
T ss_pred             HHHHHHHHHHHHHhCCc------------cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHH
Confidence               22222221111111            0000011122222222 2222221121222223334443321111111144


Q ss_pred             hHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHH
Q 007612          196 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVL  242 (596)
Q Consensus       196 ~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~  242 (596)
                      +..+...=.=-+--++||++.|.+....+......+.++..++....
T Consensus       149 ~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  149 RMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            44444333335567889999999988778777666666555555543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.65  E-value=0.0011  Score=70.98  Aligned_cols=102  Identities=13%  Similarity=0.063  Sum_probs=81.2

Q ss_pred             hhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHH
Q 007612          396 ILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQV  475 (596)
Q Consensus       396 ~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (596)
                      ..+-.+.....+.+.+    |.+        .++.+.++++...+..++.++..                    +...+.
T Consensus        72 ~ysYal~qIp~GlLaD----rlG--------~K~vL~l~~l~Wsl~t~L~~fa~--------------------Sl~~L~  119 (511)
T TIGR00806        72 PYSHLAVLVPVFLLTD----YLR--------YKPVLVLQALSFVCVWLLLLLGT--------------------SVWHMQ  119 (511)
T ss_pred             HHHHHHHHHHHHHHHH----HhC--------chHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHH
Confidence            3444455555554433    443        44568888888888887777642                    567788


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007612          476 PQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMV  530 (596)
Q Consensus       476 ~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i  530 (596)
                      +.-+++|++++... +.+.++++-+|++.|++++|+.+....+|.++++.+.+.+
T Consensus       120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999 9999999999999999999999999999999999999973

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.61  E-value=0.042  Score=56.62  Aligned_cols=161  Identities=17%  Similarity=0.188  Sum_probs=95.8

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhh-----hccCchHH
Q 007612           36 KSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSD-----SYWGRFKT  110 (596)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laD-----r~~Gr~~~  110 (596)
                      .+...+.+.++++.+..+.+.+-.+. .+|..++ .-|.|-++.+.....+  --+.--++...+.|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            45566788999999999988865554 5665554 5667666554333222  11233466777888     86 99887


Q ss_pred             HHH-HHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccc
Q 007612          111 CAI-FQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAK  189 (596)
Q Consensus       111 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  189 (596)
                      -++ +..+  +|.++..++..    .|+..+      +....++...+....++.-+..+.--.++-...-.+..+++  
T Consensus       101 Wvvp~q~l--lG~~mllLs~~----v~~~~g------~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~--  166 (510)
T KOG3574|consen  101 WVVPCQYL--LGLFMLLLSYL----VDRGLG------GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN--  166 (510)
T ss_pred             eeeehHHH--HHHHHHHHhhC----CCcccc------cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh--
Confidence            544 3333  33344433311    111221      12222334434334445556666666677777777888887  


Q ss_pred             cccchhhHHHHHHHHHhHHHHHHhhhhhhh
Q 007612          190 EGHSKVAFFSYFYLALNLGSLFSNTILGYF  219 (596)
Q Consensus       190 ~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l  219 (596)
                          .+-+......+.+.|.++|..+.-.+
T Consensus       167 ----lgyaST~q~Vg~~~GyfL~~~ifLaL  192 (510)
T KOG3574|consen  167 ----LGYASTCQSVGQTAGYFLGNVVFLAL  192 (510)
T ss_pred             ----cCchhHHHHHHHhhhHHhhcceeeEe
Confidence                77777777888888888887654433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.58  E-value=0.0029  Score=70.12  Aligned_cols=153  Identities=10%  Similarity=-0.054  Sum_probs=107.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHH-H
Q 007612           37 SGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNA---EAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTC-A  112 (596)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~---~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l-~  112 (596)
                      .+.+|.+...+++.+.....+|.+..+-|......++-|+.   +.++......++..++.++.|.+.-++ +|-|.. +
T Consensus       306 f~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li  384 (599)
T PF06609_consen  306 FKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLI  384 (599)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHH
Confidence            34457777777888888888888887777776666665553   567787888888889999999999886 776665 4


Q ss_pred             HHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccccccc
Q 007612          113 IFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGH  192 (596)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  192 (596)
                      ++.+++.++.-.++.. . ++                   |....+...++.|+|.|...........-..|++.     
T Consensus       385 ~~~~~~ta~~Gama~~-~-~~-------------------n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~-----  438 (599)
T PF06609_consen  385 FGSVLMTAFCGAMAAV-R-PD-------------------NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED-----  438 (599)
T ss_pred             HHHHHHHHHHHHHHHc-c-CC-------------------CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH-----
Confidence            5555555444444433 1 11                   22334556678888888877676666666677777     


Q ss_pred             chhhHHHHHHHHHhHHHHHHhhhhh
Q 007612          193 SKVAFFSYFYLALNLGSLFSNTILG  217 (596)
Q Consensus       193 ~r~~~~~~~~~~~~lg~~~~~~i~g  217 (596)
                       .+.+.++....-.+|+.+|..+-.
T Consensus       439 -ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  439 -IGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             -HHHHHHHHHHHHHHhhHHHHHHHH
Confidence             888888888888888888776543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=97.47  E-value=0.0023  Score=71.11  Aligned_cols=119  Identities=10%  Similarity=0.062  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHH
Q 007612          427 ELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKS  506 (596)
Q Consensus       427 ~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg  506 (596)
                      ++..+.+|.++..++.++.++....              .-..+.+.+.+..++.|+|.+..++.....+.+.+| +.||
T Consensus        90 ~R~vllig~ll~~iG~ll~ala~~~--------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG  154 (591)
T PTZ00207         90 PRPIFVLSMTVFCLGTLLFALTFQE--------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG  154 (591)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcc--------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH
Confidence            5567899999999999888764210              001256667778889999999998888888899997 6799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 007612          507 FGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWY  577 (596)
Q Consensus       507 ~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~  577 (596)
                      .+.|+......+|+++.+.+...+..                 .++..+|++++++.++..++.+.+.+..
T Consensus       155 ~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        155 AVVAIMKTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            99999999999999865555443322                 1234577778888877776666655443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.34  E-value=0.0007  Score=70.97  Aligned_cols=185  Identities=15%  Similarity=0.058  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      +.+.++++...+....++++.+.+..-+ ..-|.+...+|.+.....++..+++.++|.++||...-|++.++......+
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v  344 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV  344 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            4566667666666666666665554333 245777788899999999999999999999999973334455555444444


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +...+...+. ..                  ...+.++....+.|++..+..|...-+..|..-|..+      ++..|+
T Consensus       345 ~~~~l~~~t~-~~------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------~tSsGl  399 (480)
T KOG2563|consen  345 GTLMLLTCTL-FL------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------GTSSGL  399 (480)
T ss_pred             HHHHHHHhhc-cC------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC------ccccee
Confidence            4322222111 11                  1244555666677877778888888888887544442      244556


Q ss_pred             HHHHHhHHHHHHhhhhhhhccccc----chHHHHHHHHHHHHHHHHHHhcCccee
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGM----WALGFWVSTGSAFAALVLFLAGTTRYR  251 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~----~~~~f~~~~~~~~~~~~~~~~~~~~~~  251 (596)
                      .+...++.+++-.++-+...+..+    +...-+.....+.+..++..+.++.++
T Consensus       400 l~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~  454 (480)
T KOG2563|consen  400 LNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR  454 (480)
T ss_pred             EEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence            666666767666667777766555    333333444444555555555555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.23  E-value=0.0046  Score=66.47  Aligned_cols=157  Identities=13%  Similarity=0.042  Sum_probs=104.0

Q ss_pred             chhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHH
Q 007612          395 DILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQ  474 (596)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (596)
                      ..++..++.+..+..-.|..           +.++-++.|.++++++.+++..++..               ++...+++
T Consensus        80 ~slg~~i~~liF~~Ws~k~~-----------~~k~Pli~s~ii~~~g~llY~~l~~~---------------~~~~~y~m  133 (488)
T KOG2325|consen   80 SSLGHAIFSLIFGIWSNKTG-----------SVKKPLIVSFLIAIIGNLLYLALAYV---------------PNGVKYLM  133 (488)
T ss_pred             HHHHHHhcchhhcccccccC-----------CcccCHHHHHHHHHHHHHHHHHHHhc---------------ccchHHHH
Confidence            45556666666664422211           12334899999999998887554422               11256778


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhH
Q 007612          475 VPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDR  554 (596)
Q Consensus       475 ~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~  554 (596)
                      .+..++.|+|.+..... =.|+++..-.++|.++++..+....+|..+||.+...+.......  ..+.+. ..-..|..
T Consensus       134 L~~R~l~Gvg~~n~a~l-R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G--~~i~~~-~~~n~YTa  209 (488)
T KOG2325|consen  134 LVARILTGVGVGNFAVL-RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG--FMILPG-LIFNMYTA  209 (488)
T ss_pred             HHHHHHcCcCcccHHHH-HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc--eEEcCc-ceEEecch
Confidence            88999999986654443 368888777788888888888877888888888777655432211  123332 33345666


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccc
Q 007612          555 FYFLLAGLTTVDFVVYIACAKWYKCIE  581 (596)
Q Consensus       555 ~f~~~a~i~~i~~~~~~~~~~~~~~~~  581 (596)
                      .=|+.+++.++..++..++.+|..+..
T Consensus       210 p~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  210 PAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhheeecccCc
Confidence            778899999999988888888765543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.19  E-value=0.0018  Score=71.70  Aligned_cols=131  Identities=8%  Similarity=0.076  Sum_probs=97.9

Q ss_pred             chhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHH
Q 007612          395 DILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQ  474 (596)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (596)
                      ..++.++...+.+    ++.+|.+        ++..+.+++++..++-+..++.                    .+.+..
T Consensus       127 ~~~G~~vG~~i~g----~lsD~~G--------Rk~~~~~~~~~~~i~~~~~a~a--------------------~~~~~~  174 (521)
T KOG0255|consen  127 FFLGVLVGSLIFG----PLSDRFG--------RKPVLLVSLLLFIIFGILTAFA--------------------PNYWMF  174 (521)
T ss_pred             HHHHHHHHHhhhe----ehHhhcc--------cHHHHHHHHHHHHHHHHHHHHh--------------------CcHHHH
Confidence            3444444444444    4455554        3445788888888777666664                    477888


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhH
Q 007612          475 VPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDR  554 (596)
Q Consensus       475 ~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~  554 (596)
                      ++.-++.|++.+......+.+..|..+++.|+.+..+ ....+.++.+++...+++..        +|          ++
T Consensus       175 ~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~  235 (521)
T KOG0255|consen  175 LIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RW  235 (521)
T ss_pred             HHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HH
Confidence            8889999999999999999999999999999999999 88888899898888887654        34          67


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc
Q 007612          555 FYFLLAGLTTVDFVVYIACAKWY  577 (596)
Q Consensus       555 ~f~~~a~i~~i~~~~~~~~~~~~  577 (596)
                      .+|+..+...+.+++ +++.+|.
T Consensus       236 ~~~~~~~~~~~~~~~-~~l~~Es  257 (521)
T KOG0255|consen  236 LFWIISIPSGLFLLL-WFLPPES  257 (521)
T ss_pred             HHHHHHHHHHHHHHH-HHccCcC
Confidence            788877777776665 4444343

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.15  E-value=0.014  Score=53.33  Aligned_cols=111  Identities=13%  Similarity=0.078  Sum_probs=82.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhH
Q 007612           75 NNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEI  154 (596)
Q Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (596)
                      ++..-..-.++......+.+++++.+.+++ |.|+.++++.+...+-......    |                    +.
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~----~--------------------~~   89 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY----P--------------------NS   89 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh----h--------------------hH
Confidence            333334445555666778888888999996 9999999998776654443322    2                    36


Q ss_pred             HHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhh
Q 007612          155 CLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTIL  216 (596)
Q Consensus       155 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~  216 (596)
                      +.++.+-++.|++.+..+.+...++.+..+++.      |++-.+++....+.+.++|.++.
T Consensus        90 ~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen   90 YTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence            778889999999999999999999999887777      77777777666666666665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.07  E-value=0.0037  Score=64.26  Aligned_cols=129  Identities=14%  Similarity=0.115  Sum_probs=99.5

Q ss_pred             HHHHH-HHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCc-hHHHHHHHHHHHHHHHHHHhhhccccccCCCCCC
Q 007612           64 LVLFL-TRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGR-FKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGN  141 (596)
Q Consensus        64 l~~yl-~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (596)
                      -..++ ...+|+++.+.|-+.+...+...+.+..-.+..||..|- +-.+..++..+.-..++...+.            
T Consensus       283 t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~------------  350 (451)
T KOG2615|consen  283 TVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR------------  350 (451)
T ss_pred             hHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc------------
Confidence            33344 457899999999999999998888888888889986333 3334444444444444444441            


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcc
Q 007612          142 ELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFED  221 (596)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~  221 (596)
                                 ....++.+..+-.+..+...+....++....|+.+      ||+..|+....+.++-++||.++|.+..
T Consensus       351 -----------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  351 -----------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             -----------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence                       24567888888888888888999999999999999      9999999999999999999999987754

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.98  E-value=0.0026  Score=68.81  Aligned_cols=152  Identities=21%  Similarity=0.178  Sum_probs=116.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHH-HHhhhccCchHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGV-NLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGA-FLSDSYWGRFKTCAIFQ  115 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G-~laDr~~Gr~~~l~~~~  115 (596)
                      ++.|..+.++...+.....-.+-.. .+..|+...++++..+.+...+.......+++++.. .+.-. +|-|+++.+|+
T Consensus       237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl  315 (463)
T KOG2816|consen  237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGL  315 (463)
T ss_pred             CCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHH
Confidence            3445555555555554443322111 335677788999999999999999999999988887 66666 49999999999


Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          116 GIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      ....+.....+++.                       +.++.+....+.++. +...|+..++++.+.++++      ++
T Consensus       316 ~~~~~~~~~~af~~-----------------------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g  365 (463)
T KOG2816|consen  316 LSEFLQLLLFAFAT-----------------------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QG  365 (463)
T ss_pred             HHHHHHHHHHHHhc-----------------------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------cc
Confidence            99999999999982                       266666666555444 6677999999999999999      99


Q ss_pred             hHHHHHHHHHhHHHHHHhhhhhhhc
Q 007612          196 AFFSYFYLALNLGSLFSNTILGYFE  220 (596)
Q Consensus       196 ~~~~~~~~~~~lg~~~~~~i~g~l~  220 (596)
                      +.+++....-.+.++++|.+-+.+.
T Consensus       366 ~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  366 KVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             chhhHHHHHHHHhhhhhHHHHHHHH
Confidence            9999999999999999998877653

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.85  E-value=0.011  Score=47.78  Aligned_cols=72  Identities=11%  Similarity=-0.064  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 007612           55 LAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLS  128 (596)
Q Consensus        55 ~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~  128 (596)
                      ++-+..++.+| .+.++.++|..+++++.+...+++.++.+...++.++. .+++.+..++++..+..+.+++.
T Consensus         6 igRFayTplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    6 IGRFAYTPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             hHHHHHHhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566555 57789999999999999999999999999999999985 88899999999999999888887

Note that many members are hypothetical proteins.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.77  E-value=0.33  Score=52.12  Aligned_cols=62  Identities=16%  Similarity=0.145  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007612          472 FWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKI  533 (596)
Q Consensus       472 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~  533 (596)
                      ..++..+++..+..-..+.+..++-.+++.+..-|+.|-+.|+..++|+-.-..++-.+.+.
T Consensus       406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            34455678888888888899999999999999999999999999999887766665544444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.69  E-value=0.00042  Score=76.63  Aligned_cols=176  Identities=12%  Similarity=0.109  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH-HHHHHhhhHHHHhhhc-cCchHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTG-TVYIFSLVGAFLSDSY-WGRFKTCAIFQGIF  118 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~-~Gr~~~l~~~~~~~  118 (596)
                      +.+....+....+....-++.+++|-|++.++++++.+++.+.+...+ +..++.+++|++..|+ .+.|+.+....+..
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            456677778888888888999999999999999999999988877755 6779999999999996 23455544444433


Q ss_pred             HHHHHH---H-Hhhhccc---cccC---------------CCCCCCC---------CCCCCCCchhHHHHHHHHHHHHHh
Q 007612          119 VIGLVL---L-SLSSYLF---LIRP---------------RGCGNEL---------TPCGTHSSLEICLFYLSIYFVALG  167 (596)
Q Consensus       119 ~~~~~~---~-~~~~~~~---~~~~---------------~~~~~~~---------~~~~~~~~~~~~~l~~~~~l~g~g  167 (596)
                      .++.+.   + .+....+   .+..               ..||++.         -.|...=..+...+++..++..+.
T Consensus       385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~  464 (539)
T PF03137_consen  385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF  464 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence            333322   1 1110000   0000               2233211         112222112344555555555555


Q ss_pred             ccccccchhhhhhccCCccccccccchhhHHHHHHH-HHhHHHHHHhhhhhhhccc
Q 007612          168 NGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYL-ALNLGSLFSNTILGYFEDE  222 (596)
Q Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~lg~~~~~~i~g~l~~~  222 (596)
                      .+..........-+.+|+++      |..+.|+... .--+|.+-||++.|++.|.
T Consensus       465 ~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  465 TFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             --------------------------------------------------------
T ss_pred             HHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            55556666667778999999      9999999555 4477889999999998875

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.67  E-value=0.011  Score=66.43  Aligned_cols=178  Identities=11%  Similarity=0.089  Sum_probs=109.5

Q ss_pred             CccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHH--hhhhhhhccc------
Q 007612          388 PASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVE--CYRLKYAKTE------  459 (596)
Q Consensus       388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~--~~~~~~~~~~------  459 (596)
                      ++.+...+-++..+...++.+.    ..|..        +.+.+.+|.++++++.++.++-.  .+.|......      
T Consensus       134 sG~I~s~~dig~~l~i~fVsYf----G~r~H--------rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~  201 (735)
T KOG3626|consen  134 SGLIASSYDIGNLLLIIFVSYF----GSRGH--------RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVE  201 (735)
T ss_pred             ceeEeeecccchhhhhHhHHHh----ccccC--------ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcccc
Confidence            4555555566666666666543    33332        44568899999999988776532  1122211100      


Q ss_pred             -C--------------------CCCC--CCcee-ehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHH
Q 007612          460 -C--------------------KHCE--GASSL-SIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTS  515 (596)
Q Consensus       460 -~--------------------~~~~--~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~  515 (596)
                       +                    .++.  ...+. .+..++.+.++.|+|....++...+|+.|-+.++.-+...|+.+++
T Consensus       202 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~  281 (735)
T KOG3626|consen  202 NPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM  281 (735)
T ss_pred             CCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH
Confidence             0                    0111  12222 2335666889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHH----HHHHHHHHHHHHHHHHhhccccc
Q 007612          516 ISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRF----YFLLAGLTTVDFVVYIACAKWYK  578 (596)
Q Consensus       516 ~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----f~~~a~i~~i~~~~~~~~~~~~~  578 (596)
                      ..+|.++|-++.+...+...+-+.. -..-+..+..+-.+    |++.+++.++..+.++++-++..
T Consensus       282 ~~lGPaiGfllgS~~l~lYvD~~~~-~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  282 AILGPAIGFLLGSFCLKLYVDFGLS-PIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHhhhHHHHHHHHHHHHeeeccccC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence            9999999988888776654332100 00001122333334    44556666666666666655544

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.62  E-value=1.2  Score=47.83  Aligned_cols=164  Identities=15%  Similarity=0.081  Sum_probs=97.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHH-HHHHHhhhHHHHhhhccCchHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQN---NAEAANNVSKWTG-TVYIFSLVGAFLSDSYWGRFKTCAIF  114 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~---~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~Gr~~~l~~~  114 (596)
                      .++.+..+.+..++..+.+....     -++|.+..+   +....++-+..-+ +..+..++-+++.++. -|.+++-+.
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~   98 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence            34555556665555555443332     245665443   4445666666655 6778888999999996 999999888


Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCCCCCCCC---C------CC-C------chhHHHHHHHHHHHHHhcccccc-chhh
Q 007612          115 QGIFVIGLVLLSLSSYLFLIRPRGCGNELTPC---G------TH-S------SLEICLFYLSIYFVALGNGGYQP-NIAT  177 (596)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~-~------~~~~~~l~~~~~l~g~g~g~~~~-~~~~  177 (596)
                      ...++...+++++... |.      ..-.|+.   .      .+ +      --+.|..-+.-...=+-.....+ .-+.
T Consensus        99 ~~~F~~fF~LFa~Vi~-P~------~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~  171 (509)
T COG3202          99 LGFFLGFFALFAFVIY-PY------KDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQ  171 (509)
T ss_pred             HHHHHHHHHHHHHHHh-cc------ccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888777632 22      1112221   0      00 0      00111111111111111111111 3456


Q ss_pred             hhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcc
Q 007612          178 FGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFED  221 (596)
Q Consensus       178 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~  221 (596)
                      +..|+...++      -.+.+++++.+.|++..++..+..++..
T Consensus       172 faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         172 FANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6778877777      6789999999999999999988888865

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.50  E-value=0.0034  Score=66.97  Aligned_cols=138  Identities=13%  Similarity=0.103  Sum_probs=103.2

Q ss_pred             HHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHH
Q 007612          399 VAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQY  478 (596)
Q Consensus       399 ~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (596)
                      +-+...+.+++.||+.+           .++.+..|.++.+++.+.++...                  ......+.+.+
T Consensus        74 VY~t~i~GG~laDr~LG-----------~~~tI~lGail~~iGh~~L~~~~------------------~~~~~gl~i~L  124 (498)
T COG3104          74 VYLTPIIGGWLADRVLG-----------TRRTIVLGAILMAIGHLVLAISS------------------VSGPGGLYIGL  124 (498)
T ss_pred             HHHHHHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHHHHHhccc------------------cccccHHHHHH
Confidence            33444455555444443           34469999999999999887631                  12455677788


Q ss_pred             HHHHHHHHhhhhhHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHH
Q 007612          479 ALIGASEVFMYVAQLEFFNAQAPDG--LKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFY  556 (596)
Q Consensus       479 ~l~g~~~~~~~~~~~~~~~~~~P~~--~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f  556 (596)
                      +++++|.+..=+...++..|+.|++  .|-.+.+++.+..++|+.++|.+.+++.+                ..+++..|
T Consensus       125 ~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~----------------~~g~~~gF  188 (498)
T COG3104         125 ALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI----------------NYGWHVGF  188 (498)
T ss_pred             HHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH----------------hhCHHHHH
Confidence            8888999999999999999999954  35557777888889999999999998765                34567889


Q ss_pred             HHHHHHHHHHHHHHHhhcccccccc
Q 007612          557 FLLAGLTTVDFVVYIACAKWYKCIE  581 (596)
Q Consensus       557 ~~~a~i~~i~~~~~~~~~~~~~~~~  581 (596)
                      ...++-+.++++.+++..+..+...
T Consensus       189 ~~aavGm~~gl~~f~~~~r~~~~~~  213 (498)
T COG3104         189 GLAAVGMIIGLVIFLLGRRHVKGIG  213 (498)
T ss_pred             HHHHHHHHHHHHHHHHccchhcCCC
Confidence            8888888888888888877766543

>PRK03612 spermidine synthase; Provisional

Probab=96.41  E-value=0.14  Score=56.59  Aligned_cols=174  Identities=13%  Similarity=0.043  Sum_probs=93.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH-
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI-  117 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~-  117 (596)
                      +.+.+....+...+..+.+-.+..   -.+...+|-+....+.+++.+.++..+|+.++|+++++- -| +...+-..+ 
T Consensus        15 ~~~~l~~~~f~sg~~~L~yEv~~~---r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~-~~~~~e~~i~   89 (521)
T PRK03612         15 DRALLLAAVFVCAACGLVYELLLG---TLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AA-GFVAVELLLA   89 (521)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HH-HHHHHHHHHH
Confidence            334455555555555555544433   334456788888889999999999999999999887542 22 222221111 


Q ss_pred             -HH-HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          118 -FV-IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       118 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                       .. ++..++..... ..                 ......++...++.++..|+..|....+..+... ++      -+
T Consensus        90 l~~~~~~~ll~~~~~-~~-----------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g  144 (521)
T PRK03612         90 LLGGLSALILYAAFA-FQ-----------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LG  144 (521)
T ss_pred             HHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hh
Confidence             11 11111111100 00                 0011223344455667777777766666544322 12      23


Q ss_pred             hHHHHHHHHHhHHHHHHhhhhhhhc-ccccchHH-HHHHHHHHHHHHHH
Q 007612          196 AFFSYFYLALNLGSLFSNTILGYFE-DEGMWALG-FWVSTGSAFAALVL  242 (596)
Q Consensus       196 ~~~~~~~~~~~lg~~~~~~i~g~l~-~~~~~~~~-f~~~~~~~~~~~~~  242 (596)
                      +..|-.|....+|+++|.++.+++. ...|-... +.++.+-.+++++.
T Consensus       145 ~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        145 HNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             hhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            4566777788889999988888654 34554433 33333333344333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.21  E-value=0.062  Score=53.17  Aligned_cols=91  Identities=15%  Similarity=0.097  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHH
Q 007612          427 ELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKS  506 (596)
Q Consensus       427 ~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg  506 (596)
                      +...+.+|.+...+++..+.....++             .+..+.|.+.....+.+.+....+.+...-..+.+|+ .||
T Consensus        65 p~~~l~iG~~~~~~GY~~~~l~~~~~-------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG  130 (250)
T PF06813_consen   65 PWVVLLIGAVLGFVGYGLLWLAVSGR-------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRG  130 (250)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCc-------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccC
Confidence            66678899999999988776543221             1123556666666677777777777777777789985 699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007612          507 FGSALCMTSISLGNYVSSLLLTMVM  531 (596)
Q Consensus       507 ~~~gl~~~~~~lg~~lg~~l~~~i~  531 (596)
                      ++.|+.-....+++++-..+...+.
T Consensus       131 ~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  131 TVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             ceehhhhHHHHhHHHHHHHHHHHHc
Confidence            9999999999998877766665443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.11  E-value=0.048  Score=57.55  Aligned_cols=125  Identities=12%  Similarity=0.044  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCch---hH
Q 007612          429 QRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDG---LK  505 (596)
Q Consensus       429 ~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~---~r  505 (596)
                      +.+.+|.++..++++++.+.....           ...+......+.+++.++++|.+..=|...++..|+++++   .|
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~-----------~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~   70 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPP-----------SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR   70 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSS-----------SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcc-----------hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence            457788888888888755433110           0011223456777888999999999999999999999976   45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 007612          506 SFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCI  580 (596)
Q Consensus       506 g~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~  580 (596)
                      ..+-..+.+..++|..++..+.+++.+                +.++...|++.++.++++.+.++.-.+.++..
T Consensus        71 ~~~F~~fY~~in~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   71 DSFFNWFYWGINIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhHHHHHHHHhhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            556666777888899888877776654                34567788888888888888777776666554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.99  E-value=2.6  Score=44.45  Aligned_cols=57  Identities=21%  Similarity=0.185  Sum_probs=47.8

Q ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 007612          470 SIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLL  526 (596)
Q Consensus       470 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l  526 (596)
                      +-+|.+....++|+..+-.....+.+..+..|++++-.+..+..+.-..|-..|..+
T Consensus       342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            457778888999999999999999999999999999988888888777777766544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.95  E-value=3.1  Score=44.92  Aligned_cols=59  Identities=14%  Similarity=0.091  Sum_probs=50.4

Q ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007612          470 SIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLT  528 (596)
Q Consensus       470 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~  528 (596)
                      +-++.++.++++|+..|........+..+..++++|..+..+..++-.+|-.+|..+.-
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667899999999999999999999999999999999999998888888876644

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.92  E-value=0.18  Score=54.06  Aligned_cols=153  Identities=12%  Similarity=0.001  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHH
Q 007612           43 GIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGL  122 (596)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~  122 (596)
                      +++..++..+-.++--+.-..+..|+..+ |+++...|..-+...+....+.....++.+|+ |..|.=+++.......+
T Consensus       260 vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L  337 (432)
T PF06963_consen  260 VFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCL  337 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHH
Confidence            33333333333333334455567788755 99999999999999999999999999999997 99888777776555444


Q ss_pred             HHHHhhhccccccCCCCCCCCCCCCCC-CchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH
Q 007612          123 VLLSLSSYLFLIRPRGCGNELTPCGTH-SSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF  201 (596)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  201 (596)
                      .+...+-..|.              .. +..+...++.+.++.=+|.=++--+..-++.|..|+++      |+...+..
T Consensus       338 ~~~v~~~~~~~--------------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq  397 (432)
T PF06963_consen  338 ALCVVSFWAPG--------------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQ  397 (432)
T ss_pred             HHHHHHHhcCC--------------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHH
Confidence            44333211111              00 12345566666666556665777888899999999998      99999999


Q ss_pred             HHHHhHHHHHHhhhhh
Q 007612          202 YLALNLGSLFSNTILG  217 (596)
Q Consensus       202 ~~~~~lg~~~~~~i~g  217 (596)
                      +...++.-.+...++-
T Consensus       398 ~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  398 NSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9888888888765443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.24  E-value=0.2  Score=54.08  Aligned_cols=118  Identities=18%  Similarity=0.104  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCc--hh
Q 007612          427 ELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPD--GL  504 (596)
Q Consensus       427 ~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~--~~  504 (596)
                      ++..+.+|.++.+++...++.....                ..+.......+++..+|.++.....-++..|...+  +.
T Consensus        58 r~~Y~~i~~~~~~~~~~~~~~~~~~----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~  121 (433)
T PF03092_consen   58 RKPYMIIGWLLGAVSALVLALLPAS----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES  121 (433)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccc----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence            4456777877776666666554311                12344455566777888888887777777777632  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccc
Q 007612          505 KSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKW  576 (596)
Q Consensus       505 rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~  576 (596)
                      +|..++.......+|+.++..+.|.+.+..                +++..|++.+++..+..+..+++..|
T Consensus       122 ~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~----------------~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  122 RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF----------------GPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            788899999999999999998988766522                22335666677777766666666665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.08  E-value=1  Score=49.12  Aligned_cols=163  Identities=18%  Similarity=0.118  Sum_probs=89.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHH-HHHHHhhhHHHHhhhccCchHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVL---QQNNAEAANNVSKWTG-TVYIFSLVGAFLSDSYWGRFKTCAIFQ  115 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~Gr~~~l~~~~  115 (596)
                      ++.++.+.+..++....|-     +.--++|.+   ..++.....+-....+ +..+...+-.+++|++ +|.+++-+..
T Consensus        23 ~~k~~~l~~m~f~i~f~y~-----~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~   96 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYT-----ILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIII   96 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence            3455555555555444322     112234433   1233334444443333 4566677789999997 9999888777


Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCCCCCCCC------Cch---------hHHHHHHHHHHHHHhcccccc-chhhhh
Q 007612          116 GIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTH------SSL---------EICLFYLSIYFVALGNGGYQP-NIATFG  179 (596)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---------~~~~l~~~~~l~g~g~g~~~~-~~~~~~  179 (596)
                      ..+.....+.++... |+      .+=.||+...      .+.         +.|...+.-+..-+-.....+ .-+.+.
T Consensus        97 ~~F~~fF~~f~~vly-P~------~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fA  169 (491)
T PF03219_consen   97 IPFLGFFALFAFVLY-PN------RDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFA  169 (491)
T ss_pred             HHHHHHHHHHHHHHh-hc------hhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766666666665422 32      1112331100      000         111111111111111112122 347888


Q ss_pred             hccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcc
Q 007612          180 ADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFED  221 (596)
Q Consensus       180 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~  221 (596)
                      .|.++.++      -.+.++++..+.|+|.+++..+..++.+
T Consensus       170 N~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  170 NEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888      6689999999999999999888887766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.07  E-value=0.084  Score=55.72  Aligned_cols=61  Identities=16%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhh
Q 007612          153 EICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYF  219 (596)
Q Consensus       153 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l  219 (596)
                      +.+.+++..+..|+..|....+....+.+..|+++      |.-+++...++-++|..++..++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            37777788888999989999999999999988888      88889888888888888887665544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.51  E-value=0.52  Score=53.52  Aligned_cols=132  Identities=14%  Similarity=0.072  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchh--
Q 007612          427 ELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGL--  504 (596)
Q Consensus       427 ~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~--  504 (596)
                      +.+.+.++.++..++++++++....     .      . ...........++++.++|.+..-|...++..++++++.  
T Consensus        53 ~~~tIl~~~ii~~lG~~llai~a~~-----~------~-~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~  120 (654)
T TIGR00926        53 KFKTILYLSIVYVVGHALLSFGAIP-----S------S-GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS  120 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccCc-----c------c-ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh
Confidence            4456778888888888776652100     0      0 000112234567788889999989999999999998643  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 007612          505 -KSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKC  579 (596)
Q Consensus       505 -rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~  579 (596)
                       +-..-.++.+..++|+.+++.+.+.+.+....     +    -...++...|.+.++.++++.++++...+.++.
T Consensus       121 ~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~-----f----g~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~  187 (654)
T TIGR00926       121 LRSRFFSFFYFAINAGSLISTIITPILRGDVGC-----F----GCQDCYPLAFGVPAILMILALIVFMAGSKMYKK  187 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----c----ccCcchHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence             55566667777788888888887766431100     0    012245678888888888888877766655543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=94.35  E-value=0.15  Score=53.99  Aligned_cols=130  Identities=12%  Similarity=0.065  Sum_probs=90.3

Q ss_pred             CccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCC-C
Q 007612          388 PASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEG-A  466 (596)
Q Consensus       388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~  466 (596)
                      .+.+....++..++..|+.+...+|...|++.|||       .+..+.....+++.++++........+...    +. .
T Consensus        69 ~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP-------fI~~~s~~i~~~l~Lig~aaDig~~lgd~~----~~~~  137 (498)
T KOG0637|consen   69 SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP-------FILAGSLLIAVSLFLIGYAADIGLLLGDNE----RKPV  137 (498)
T ss_pred             ccccccccccccceecccccccccccccccccccc-------hHHHhhHHHHHHHhhhhhHhhhhHHhcCCc----cccc
Confidence            34455566788889999999999999888883333       477888888888877766543322122111    00 1


Q ss_pred             ceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 007612          467 SSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSF-GSALCMTSISLGNYVSSLLLT  528 (596)
Q Consensus       467 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~-~~gl~~~~~~lg~~lg~~l~~  528 (596)
                      -...+...++.+-++-++......+.=++..+...++.+-+ +.+.+.++..+||.+|..+.+
T Consensus       138 ~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  138 KPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             chHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            11223344556666777777777777789999998888888 999999999999999977655

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.00  E-value=0.88  Score=41.55  Aligned_cols=62  Identities=13%  Similarity=0.240  Sum_probs=53.8

Q ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007612          470 SIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVM  531 (596)
Q Consensus       470 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~  531 (596)
                      +.+.+++.-++.|++.+...++.-.++.+...++.+++-.|++......+..+|..+.-.+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667888899999999999999999999999999999999999999888888876655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=93.34  E-value=1.2  Score=45.76  Aligned_cols=96  Identities=9%  Similarity=0.010  Sum_probs=56.3

Q ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC
Q 007612          469 LSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLN  548 (596)
Q Consensus       469 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~  548 (596)
                      .++|+....+++......+..+....-+++....+.-|..-|++.+..-+-..+-++   .+.+    +. +--++-...
T Consensus       324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~---iVvd----~~-g~~L~ir~Q  395 (433)
T KOG3810|consen  324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTL---IVVD----DR-GLGLDIRTQ  395 (433)
T ss_pred             cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheE---EEEc----cc-ccCCCccee
Confidence            367888888999988888888887777777777788888888766553322211111   1111    10 001110111


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHh
Q 007612          549 KGHLDRFYFLLAGLTTVDFVVYIA  572 (596)
Q Consensus       549 ~~~~~~~f~~~a~i~~i~~~~~~~  572 (596)
                      ---|..+|.+++++.++.....+.
T Consensus       396 ~~~Y~~Yf~v~~~i~~~~~~~~~~  419 (433)
T KOG3810|consen  396 FVVYSSYFIVLGVIFLIGFGIEYL  419 (433)
T ss_pred             EEEEeehHHHHHHHHHHHHHHHHH
Confidence            123455788888888887665443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.27  E-value=2.3  Score=45.92  Aligned_cols=128  Identities=23%  Similarity=0.183  Sum_probs=78.9

Q ss_pred             HHhhCCChHHHHHHHHH-HHHHHHHHhhhHHHHhhhc--cCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCC-
Q 007612           69 TRVLQQNNAEAANNVSK-WTGTVYIFSLVGAFLSDSY--WGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELT-  144 (596)
Q Consensus        69 ~~~lg~~~~~~~~~~~~-~~~~~~i~~~~~G~laDr~--~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  144 (596)
                      +..++.+....-.+.++ ...+..++.++.+.+++|.  .||++++.++..+..++.++.-+..  |        +|.+ 
T Consensus       270 t~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p--------~dap~  339 (461)
T KOG3098|consen  270 TRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--P--------NDAPL  339 (461)
T ss_pred             hhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--c--------ccCCC
Confidence            33445544433222222 2444555566666666542  3889999888887777766655541  2        2332 


Q ss_pred             -C---CCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHh
Q 007612          145 -P---CGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSN  213 (596)
Q Consensus       145 -~---~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~  213 (596)
                       +   .+...+++....++.-++.|++-++.+.....+++..+ +++      |..+++++..--.++..++-
T Consensus       340 ~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~------~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  340 RPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDD------RAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             CCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCc------hHHHHHHHHHHHHHHHHHHh
Confidence             1   11122334556666778899999999999999999999 455      67777776665555554443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.80  E-value=0.93  Score=44.79  Aligned_cols=140  Identities=14%  Similarity=0.037  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhccCch--HHHHHHHHHHHHHHHHHHhhh-ccccccCCCCCCCCCCCCCCCchhHH
Q 007612           79 AANNVSKWTGTVYIFSLVGAFLSDSYWGRF--KTCAIFQGIFVIGLVLLSLSS-YLFLIRPRGCGNELTPCGTHSSLEIC  155 (596)
Q Consensus        79 ~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~--~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (596)
                      -|.+.+.+.++..+++-+..++..|- ..|  ..+.+..++.+..+.+..+.. ..|+                 ..++.
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~-----------------kes~~  345 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSSVSPS-----------------KESPS  345 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhccCCC-----------------cCCch
Confidence            37888888888888888887877762 222  233333333333322222221 1122                 23344


Q ss_pred             HHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHH
Q 007612          156 LFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGS  235 (596)
Q Consensus       156 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~  235 (596)
                      .-+++..++-.+.|.++|...-+=++..|++.      |.+.+.++..-.|+..-++-+..-.-..-.+-|..|-++.+.
T Consensus       346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~  419 (454)
T KOG4332|consen  346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAF  419 (454)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHH
Confidence            44566667778889999999999999999988      999999988887776544321100000113445677777666


Q ss_pred             HHHHHHH
Q 007612          236 AFAALVL  242 (596)
Q Consensus       236 ~~~~~~~  242 (596)
                      ..++.+.
T Consensus       420 ~~~a~i~  426 (454)
T KOG4332|consen  420 LFVASIL  426 (454)
T ss_pred             HHHHHHH
Confidence            5555444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=90.36  E-value=27  Score=38.02  Aligned_cols=56  Identities=13%  Similarity=-0.061  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhhhh-hHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007612          477 QYALIGASEVFMYV-AQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMK  532 (596)
Q Consensus       477 ~~~l~g~~~~~~~~-~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~  532 (596)
                      .|+...+-...+.. ..|.++.|....++..+-.++.....++|..+|+.+...+.+
T Consensus       134 FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       134 FYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444 788999999999999999999999999999999998887764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=89.63  E-value=1.3  Score=47.92  Aligned_cols=155  Identities=10%  Similarity=-0.010  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCChH-HHHHHHHHHHHHHHHHhhhHHHHhhhccCch-HHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRV-LQQNNA-EAANNVSKWTGTVYIFSLVGAFLSDSYWGRF-KTCAIFQGI  117 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~~~~-~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~-~~l~~~~~~  117 (596)
                      |.+|...+..++.......+.+-+....+.. .+.++. -.-.....+.++-.+|..+..+..  +-++| +.+.+..+.
T Consensus       269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~--~p~~~~~~l~i~s~~  346 (437)
T TIGR00939       269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM--WPDEDSRWLPILSFL  346 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE--eeCCCccchHHHHHH
Confidence            5566666655555444443333322222222 123332 344566667777777776554321  11222 244444444


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCC-CchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTH-SSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      -.+...++.+.           |.+.|.+ .+ .=.+-+..++..++.|+.+|-..+.+..+..+..++++      |..
T Consensus       347 R~iFIPlf~lc-----------n~~~~~~-~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~  408 (437)
T TIGR00939       347 RVLFIPLFLLC-----------NYPQRSR-LPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REV  408 (437)
T ss_pred             HHHHHHHHHHh-----------cCCcccc-CCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHH
Confidence            44444443332           1111100 00 01235566667889999999999999998888888766      777


Q ss_pred             HHHHHHHHHhHHHHHHhhh
Q 007612          197 FFSYFYLALNLGSLFSNTI  215 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i  215 (596)
                      +..+...+.++|-.+|..+
T Consensus       409 aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       409 AGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7777777777777776643

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=85.95  E-value=15  Score=37.33  Aligned_cols=59  Identities=19%  Similarity=0.235  Sum_probs=43.4

Q ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007612          470 SIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLT  528 (596)
Q Consensus       470 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~  528 (596)
                      +++.++...++-|+-.+..+...+--+.+..+++.|-.++|...+.-.+|-.+...+.-
T Consensus       341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal  399 (409)
T KOG3880|consen  341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL  399 (409)
T ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence            44555555566687777778777778888889999999999888777777766655443

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=85.81  E-value=0.23  Score=50.99  Aligned_cols=115  Identities=10%  Similarity=-0.018  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCC-CchhHHHHHHH
Q 007612           82 NVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTH-SSLEICLFYLS  160 (596)
Q Consensus        82 ~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~  160 (596)
                      ....+.++-.+|..+.++.-=+. .++|.+.+..+.-.+...++.+....|.         .|  ..+ .-.+-+..++.
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~-~~~~~l~~~s~~R~~fiPlf~~cn~~p~---------~~--~~~~~~~~d~~~~i~  254 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPG-PSPRWLWILSLLRFLFIPLFLLCNVQPR---------PR--YLPVLFNSDAWFIIL  254 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecc-cccccHHHHHHHHHHHHHHHHHHHhhcc---------cc--cCCCcccchHHHHHH
Confidence            45567888888888777642110 1334444443333333333222211111         00  000 01234556677


Q ss_pred             HHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhh
Q 007612          161 IYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNT  214 (596)
Q Consensus       161 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~  214 (596)
                      .++.|+.+|-..+....+..+..++++      |..+-.+.....++|-.+|..
T Consensus       255 ~~l~g~TNGyl~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~  302 (309)
T PF01733_consen  255 MLLFGFTNGYLSTLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSV  302 (309)
T ss_dssp             ------------HHHH--------------------------------------
T ss_pred             HHHHHHccchhhhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999988776      666666666666666666654

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=85.09  E-value=31  Score=35.88  Aligned_cols=97  Identities=9%  Similarity=-0.094  Sum_probs=52.3

Q ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHH-----HhcCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 007612          469 LSIFWQVPQYALIGASEVFMYVAQLEFF-----NAQAPDGLKSFGSALCM-TSISLGNYVSSLLLTMVMKISTEDHMPGW  542 (596)
Q Consensus       469 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~-----~~~~P~~~rg~~~gl~~-~~~~lg~~lg~~l~~~i~~~~~~~~~~~~  542 (596)
                      .+.+.+++.-++.|++..+.+.+.-++.     ...+|++..+..-+... ..+.+-.+.+..+...+.+..+.      
T Consensus       119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~------  192 (354)
T PF05631_consen  119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF------  192 (354)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC------
Confidence            4566677777888888888776544333     34566665555544444 22333333443444333332211      


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 007612          543 VPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKC  579 (596)
Q Consensus       543 ~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~  579 (596)
                              +....|...+.+.+++.++.....+|..+
T Consensus       193 --------g~vaPF~~a~~~l~~~~~~I~~~W~ENyg  221 (354)
T PF05631_consen  193 --------GPVAPFDAAIVLLAVAAVLILKTWPENYG  221 (354)
T ss_pred             --------CCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence                    11335776677777776665555555433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=84.91  E-value=27  Score=37.18  Aligned_cols=62  Identities=15%  Similarity=0.134  Sum_probs=50.2

Q ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007612          470 SIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMK  532 (596)
Q Consensus       470 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~  532 (596)
                      +.+++-+..+++|++.+. -.+.++++....|++.--++++......-+|..+|..++-.+..
T Consensus        93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen   93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777777888887665 67778999999999999999998888888888888777775544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.69  E-value=11  Score=37.25  Aligned_cols=57  Identities=14%  Similarity=0.219  Sum_probs=33.8

Q ss_pred             hhhHHHHHHHHHhHHHHHHhhh--hh-hhcc--cccchHHHHHHHHHHHHHHHHHHhcCcce
Q 007612          194 KVAFFSYFYLALNLGSLFSNTI--LG-YFED--EGMWALGFWVSTGSAFAALVLFLAGTTRY  250 (596)
Q Consensus       194 r~~~~~~~~~~~~lg~~~~~~i--~g-~l~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  250 (596)
                      |+.......++.++|++++...  .+ -..+  ...|++++.+.+++.++-++++.+..++.
T Consensus         4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f   65 (267)
T PF07672_consen    4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF   65 (267)
T ss_pred             cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5555555666778888776432  22 1111  23588888877777666666666655443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=83.69  E-value=15  Score=37.78  Aligned_cols=115  Identities=12%  Similarity=0.021  Sum_probs=66.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      ..-|.++++....+.....+-+. .++......++|    +.+.  +...+.....+++.+.+..++ |-|.++.++...
T Consensus        26 ~~~knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg----~~sl--~~~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~~   97 (390)
T KOG3097|consen   26 GILKNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLG----TVSL--GALYLSLIDSSMFMPLLIRFL-GTKWTMVLAVFP   97 (390)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCcc----cchh--hhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence            34466666666655555554444 334333332222    2111  222344455566666777775 999998877544


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCC
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYD  184 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~  184 (596)
                      ....     .+..   +                ...+..++.+-...|++.+..+.+-.++++++-.
T Consensus        98 Y~ly-----iA~N---l----------------~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   98 YALY-----IAAN---L----------------EPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHH-----HHhh---c----------------chhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            3332     2211   1                1235667777788999999998888888777654

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=82.74  E-value=80  Score=34.65  Aligned_cols=43  Identities=14%  Similarity=-0.032  Sum_probs=38.8

Q ss_pred             hhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007612          490 VAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMK  532 (596)
Q Consensus       490 ~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~  532 (596)
                      ...|.++.|..+.++..+..++.....++|..+++.+...+.+
T Consensus       163 lLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  163 LLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999988887766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	596
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		6e-22
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		7e-04

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 118/493 (23%), Positives = 195/493 (39%), Gaps = 73/493 (14%)
Query: 46  ILLNQGLATLAFFGVGVNLVLFLTRVL------QQNNAEAANNVSKWTGTVYIFSLVGAF 99
           I+ ++     +F+G+   L  FL   L      +   A A +    +   VY F L+G +
Sbjct: 17  IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGW 76
Query: 100 LSDSYWGRFKTCAIFQXXXXXXXXXXXXXXXXXXXRPRGCGNELTPCGTHSSLEICL--- 156
           ++D ++G++ T                                L  C  H+ L I     
Sbjct: 77  IADRFFGKYNTILWL---------------------------SLIYCVGHAFLAIFEHSV 109
Query: 157 --FYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNT 214
             FY  ++ +ALG+GG +P +++F  DQ+D+ +          F  FY  +N GS F++ 
Sbjct: 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA---FDMFYFTINFGSFFASL 166
Query: 215 ILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKW 274
            +         A+ F +     F A V F  G  RY H  P       F  VI +A    
Sbjct: 167 SMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTK 226
Query: 275 RVHLSAEGEDLYVIDANDSS-------TNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQG 327
                  G  L +I    ++       T G    L       +      +S  L+  ++ 
Sbjct: 227 VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKS 286
Query: 328 CSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIP 387
                   P   V+ V+ +LR+L ++     +  +F Q AS ++ Q   M   V      
Sbjct: 287 H-------PDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQWFE 336
Query: 388 PASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGI 447
           PA M + + L V   I     V+ P    I +   K LT L++MG G+ I  ++ +  G 
Sbjct: 337 PAMMQALNPLLVMLLIPFNNFVLYP---AIERMGVK-LTALRKMGAGIAITGLSWIVVGT 392
Query: 448 VECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSF 507
           ++              +G S+LSIFWQ+  YAL+   EV +    LEF  +QAP  +K  
Sbjct: 393 IQL-----------MMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441
Query: 508 GSALCMTSISLGN 520
             +    S+++GN
Sbjct: 442 IMSFWTLSVTVGN 454

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 160 SIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYF 219
           SI  + +G G  +PN++T     YDE D +      A FS F   +NLG+  +  I+G  
Sbjct: 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRD----AGFSIFVFGINLGAFIAPLIVGAA 169
Query: 220 EDEGMWALGFWVSTGSAFAALVLFLAG--TTRYRHFKPSGNPLA 261
           ++   + + F ++    F  L+++  G   T   H+    +PLA
Sbjct: 170 QEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLA 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	596
2xut_A	524	Proton/peptide symporter family protein; transport	1e-152
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	7e-19
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  447 bits (1152), Expect = e-152
 Identities = 121/548 (22%), Positives = 210/548 (38%), Gaps = 56/548 (10%)

Query: 55  LAFFGVGVNLVLFLTRVLQQN------NAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRF 108
            +F+G+   L  FL   L  +       A A +    +   VY F L+G +++D ++G++
Sbjct: 26  FSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY 85

Query: 109 KTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGN 168
            T      I+ +G   L++                          +  FY  ++ +ALG+
Sbjct: 86  NTILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGS 123

Query: 169 GGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALG 228
           GG +P +++F  DQ+D+ +          F  FY  +N GS F++  +         A+ 
Sbjct: 124 GGIKPLVSSFMGDQFDQSNKSL---AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180

Query: 229 FWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVI 288
           F +     F A V F  G  RY H  P       F  VI +A           G  +  +
Sbjct: 181 FGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGL-VLAL 239

Query: 289 DANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQ-GCSNPWRLCPVTQVEEVKCIL 347
               S+     N+        L  A  +    +            +  P   V+ V+ +L
Sbjct: 240 IGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVL 299

Query: 348 RLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYR 407
           R+L ++     +  +F Q AS ++ Q   M   V      PA M + + L V   I    
Sbjct: 300 RILVLFALVTPFWSLFDQKASTWILQANDM---VKPQWFEPAMMQALNPLLVMLLIPFNN 356

Query: 408 RVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGAS 467
            V+ P      ++    LT L++MG G+ I  ++ +  G ++              +G S
Sbjct: 357 FVLYPAI----ERMGVKLTALRKMGAGIAITGLSWIVVGTIQ-----------LMMDGGS 401

Query: 468 SLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLL 527
           +LSIFWQ+  YAL+   EV +    LEF  +QAP  +K    +    S+++GN    L  
Sbjct: 402 ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461

Query: 528 TMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCA 587
             V    +       V   ++        F  AG   +  +V+   A+ Y+  +   +  
Sbjct: 462 VSV---KSPTVTEQIVQTGMSVTAFQ--MFFFAGFAILAAIVFALYARSYQMQDHYRQAT 516

Query: 588 ESNQDNFK 595
            S    F+
Sbjct: 517 GSENLYFQ 524

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 89.0 bits (221), Expect = 7e-19
 Identities = 38/204 (18%), Positives = 82/204 (40%), Gaps = 32/204 (15%)

Query: 54  TLAFFGVGVNLVLFLTRVLQQ-----NNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRF 108
             +++G+   L+ ++  ++         A AA+ ++ +   VY+   +G F++D   G  
Sbjct: 26  RFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR 85

Query: 109 KTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGN 168
                   + ++G ++L+L                              + SI  + +G 
Sbjct: 86  PAVFWGGVLIMLGHIVLALPFGASA-----------------------LFGSIILIIIGT 122

Query: 169 GGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALG 228
           G  +PN++T     YDE D +      A FS F   +NLG+  +  I+G  ++   + + 
Sbjct: 123 GFLKPNVSTLVGTLYDEHDRRRD----AGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA 178

Query: 229 FWVSTGSAFAALVLFLAGTTRYRH 252
           F ++    F  L+++  G  +   
Sbjct: 179 FSLAAIGMFIGLLVYYFGGKKTLD 202

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 33/237 (13%), Positives = 74/237 (31%), Gaps = 46/237 (19%)

Query: 346 ILRLLPIWLCTILYSVVFTQMAS---LFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAF 402
           ++  +P+++  +L+  +  Q +     F  +       V +   P +   S +      F
Sbjct: 282 VVSYIPLFIAAVLFWAIEEQGSVVLATFAAE------RVDSSWFPVSWFQSLN----PLF 331

Query: 403 IFLYRRVIEPLAGGI-RKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECK 461
           I L      P    +         +   +  +GL+ A ++ L   I              
Sbjct: 332 IML----YTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIP-----------GA 376

Query: 462 HCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNY 521
               +  +S  W V  +AL+   E+ +    L      AP    S   ++   S S+G+ 
Sbjct: 377 LYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436

Query: 522 VSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYK 578
           ++                   +    N      ++      + V  +V +  +K  +
Sbjct: 437 LN-----------------AQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	596
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.52
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.42
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.38
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.22
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.11
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.92
2xut_A	524	Proton/peptide symporter family protein; transport	98.35

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=1.1e-30  Score=286.53  Aligned_cols=490  Identities=23%  Similarity=0.347  Sum_probs=287.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQ------QNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTC  111 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l  111 (596)
                      +++|.++.+++..++....+|++.++++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            345667788889999999999999999999999999      99999999999999999999999999999933999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccc
Q 007612          112 AIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEG  191 (596)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  191 (596)
                      +++.++..++.+++.++   +                   .+.+.++++|++.|++.+...+...+++.|++|+++    
T Consensus        89 ~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----  142 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIF---E-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN----  142 (524)
T ss_dssp             HHHHHHHHHHHHHHHHT---S-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT----
T ss_pred             HHHHHHHHHHHHHHHHh---c-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc----
Confidence            99999999998888877   2                   037789999999999999999999999999999988    


Q ss_pred             cchhhH---HHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHH
Q 007612          192 HSKVAF---FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIV  268 (596)
Q Consensus       192 ~~r~~~---~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (596)
                        |++.   +++++...++|..++|.+++++.+..+|+++|++.++..++..++.+...++.+++++++++..+..+.+.
T Consensus       143 --r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (524)
T 2xut_A          143 --KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR  220 (524)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHH
Confidence              7544   45589999999999999999998888999999988877666655555444433332222221111111111


Q ss_pred             HHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCc-------ccCccchh
Q 007612          269 AATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWR-------LCPVTQVE  341 (596)
Q Consensus       269 ~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  341 (596)
                      ...+++... ++...................   .......+..........   .++..+.||+       .......+
T Consensus       221 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  293 (524)
T 2xut_A          221 SALLTKVEG-KGNIGLVLALIGGVSAAYALV---NIPTLGIVAGLCCAMVLV---MGFVGAGASLQLERARKSHPDAAVD  293 (524)
T ss_dssp             ------CTT-HHHHHHHHHHHHHHHHHHTGG---GTTTTCSSHHHHHHHHHH---HHHHHTGGGTHHHHSCCSCCSSSST
T ss_pred             HHHhhhhcc-cCccchhhhhhhhhhhhhhhc---ccchhhhhhhhhhhhhhh---hcccccchhhHHhhhhccccHhHHH
Confidence            111111000 000000000000000000000   000000000000000000   0000001110       00111122


Q ss_pred             hhhhhhhhHHHHHHhHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccC
Q 007612          342 EVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKN  421 (596)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~  421 (596)
                      ++++.+....++.....++..+.+..+.+..+....+...  + .+.+.+...+.+..++..++.+++..+..+|.+ + 
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  368 (524)
T 2xut_A          294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG-V-  368 (524)
T ss_dssp             TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC-C-
Confidence            3344444444445555555555555544433322222210  0 133445566667777888888876555445433 2 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCC
Q 007612          422 SKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAP  501 (596)
Q Consensus       422 ~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P  501 (596)
                        +.+..+.+.+|.++.+++++.++......           +.....+.+++++.+++.+++++...+..++++.|.+|
T Consensus       369 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p  435 (524)
T 2xut_A          369 --KLTALRKMGAGIAITGLSWIVVGTIQLMM-----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAP  435 (524)
T ss_dssp             ----CCHHHHHTHHHHHHHHHHTTTTTTTTT-----------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred             --CCChHHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence              22356677788888888877665432110           00112456777888899999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 007612          502 DGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPG-NLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCI  580 (596)
Q Consensus       502 ~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~  580 (596)
                      ++.||+++|+.++..++|+.+++.+.+.+.+....    +|.+. +.  +.....|++.+++++++.++++++.++++++
T Consensus       436 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (524)
T 2xut_A          436 KAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT----EQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARSYQMQ  509 (524)
T ss_dssp             TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH----HHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccc----cccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999976542100    12100 00  0012237788888888888887777777665


Q ss_pred             chhhhh
Q 007612          581 ELEAKC  586 (596)
Q Consensus       581 ~~~~~~  586 (596)
                      +.++.+
T Consensus       510 ~~~~~~  515 (524)
T 2xut_A          510 DHYRQA  515 (524)
T ss_dssp             ------
T ss_pred             hhhhhh
Confidence            554433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=5.7e-30  Score=278.22  Aligned_cols=445  Identities=17%  Similarity=0.258  Sum_probs=290.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHhhhHHHHhhh-ccCchHH
Q 007612           37 SGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRV-----LQQNNAEAANNVSKWTGTVYIFSLVGAFLSDS-YWGRFKT  110 (596)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr-~~Gr~~~  110 (596)
                      ++++|.++.+++..++....+|++.++++.|+++.     +|++..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            45667889999999999999999999999999988     99999999999999999999999999999999 7 99999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCcccccc
Q 007612          111 CAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKE  190 (596)
Q Consensus       111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  190 (596)
                      ++++.++..++.++++++   +                    +.+.++++|++.|++.+...+...++++|++|+++++ 
T Consensus        88 ~~~~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-  143 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALP---F--------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR-  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSC---C--------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH-
T ss_pred             HHHHHHHHHHHHHHHHHh---h--------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc-
Confidence            999999999999888876   2                    2677899999999999999999999999999987632 


Q ss_pred             ccchhhHHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceecc---CCCC-ChhHHHHHH
Q 007612          191 GHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHF---KPSG-NPLARFCQV  266 (596)
Q Consensus       191 ~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~  266 (596)
                         |++++++++.+.++|..++|.+++++.+..+|+++|++.++..+++.++.+...++..++   ++.. ....+..+.
T Consensus       144 ---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (491)
T 4aps_A          144 ---RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL  220 (491)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHH
T ss_pred             ---ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHH
Confidence               667888899999999999999999999989999999998776666655544433322211   1111 111111110


Q ss_pred             HH--------------HHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCC
Q 007612          267 IV--------------AATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPW  332 (596)
Q Consensus       267 ~~--------------~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (596)
                      ..              ........      +                 ..+...... ........... . .     .|
T Consensus       221 ~~~~g~~l~~~~~~~~~~~~~~~~------~-----------------~~~~~~~~~-~~~~~~~~~~~-~-~-----~~  269 (491)
T 4aps_A          221 LVKVSLAVAGFIAIIVVMNLVGWN------S-----------------LPAYINLLT-IVAIAIPVFYF-A-W-----MI  269 (491)
T ss_dssp             HHHCCCCCHHHHHHHHHHHHHSSC------C-----------------TTHHHHHHH-HHHHHHHHHHH-H-H-----HC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCc------c-----------------cccchhhhh-HHHHHHHHHHH-H-H-----Hh
Confidence            00              00000000      0                 000000000 00000000000 0 0     00


Q ss_pred             cccCccchhhhhhhhhhHHHHHHhHhHhhhhccccceeEeeec-cccccccccccCCccccccchhhHHHHHHhhhhhhh
Q 007612          333 RLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGA-AMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIE  411 (596)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (596)
                      +... .....+++......++.....++..+.+..+.+..... ..+..    ....+.+.....+..++..++.+++.+
T Consensus       270 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~  344 (491)
T 4aps_A          270 SSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWT  344 (491)
T ss_dssp             -------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHH
T ss_pred             hccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHH
Confidence            0000 00012233333334444444444444444332211110 01111    123455666677777788888887766


Q ss_pred             cccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhh
Q 007612          412 PLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVA  491 (596)
Q Consensus       412 ~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  491 (596)
                      |+.+|.       ......+.+|.++.+++++.++......   .        ...+.+.++.++.+++.+++.+...+.
T Consensus       345 r~~~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~l~g~~~~~~~~~  406 (491)
T 4aps_A          345 AWKKNQ-------PSSPTKFAVGLMFAGLSFLLMAIPGALY---G--------TSGKVSPLWLVGSWALVILGEMLISPV  406 (491)
T ss_dssp             HTTTC----------CHHHHHHHHHHHHHHHTTTHHHHHHC---C--------CCTTCCTHHHHHHHHHHHHHHHTTTTH
T ss_pred             HHhccC-------CCchHHHHHHHHHHHHHHHHHHHHHHhc---C--------CCCCccHHHHHHHHHHHHHHHHHHhHH
Confidence            554432       1245667788888888877665543110   0        011246677788889999999999999


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 007612          492 QLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYI  571 (596)
Q Consensus       492 ~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~  571 (596)
                      .++++.|.+|++.||+++|+.++...+|+.+++.+.+.+.+                 .++...|+..+++++++.++.+
T Consensus       407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~  469 (491)
T 4aps_A          407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLV  469 (491)
T ss_dssp             HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988775532                 1234578888888888888777


Q ss_pred             hhccccccc
Q 007612          572 ACAKWYKCI  580 (596)
Q Consensus       572 ~~~~~~~~~  580 (596)
                      +..++.+++
T Consensus       470 ~~~~~~~~~  478 (491)
T 4aps_A          470 FLSKRIQGL  478 (491)
T ss_dssp             HC-------
T ss_pred             HHHHHHHHH
Confidence            777665544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=4.2e-28  Score=259.88  Aligned_cols=403  Identities=9%  Similarity=-0.008  Sum_probs=260.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF  118 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~  118 (596)
                      +++.++..++..+......+.+.+.++.+. +++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~  102 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence            456677777777777777777777776554 566 9999999999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHHh----hhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccch
Q 007612          119 VIGLVLLSL----SSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSK  194 (596)
Q Consensus       119 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  194 (596)
                      +++.+++++    +   +                    +.+.++++|++.|++.+...+...+++.|++|+++      |
T Consensus       103 ~~~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r  153 (451)
T 1pw4_A          103 AAVMLFMGFVPWAT---S--------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R  153 (451)
T ss_dssp             HHHHHHHHHCHHHH---S--------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred             HHHHHHHHhhhhcc---c--------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence            999999888    5   2                    26678999999999999999999999999999988      9


Q ss_pred             hhHHHHHHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHh
Q 007612          195 VAFFSYFYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKK  273 (596)
Q Consensus       195 ~~~~~~~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (596)
                      ++++++.+.+.++|..++|.+++++.+..+ |+++|++.++..++..++.++..++.++.....+.              
T Consensus       154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  219 (451)
T 1pw4_A          154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI--------------  219 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh--------------
Confidence            999999999999999999999999888888 99999988876665554444433332211100000              


Q ss_pred             hccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhh-HHH
Q 007612          274 WRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRL-LPI  352 (596)
Q Consensus       274 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  352 (596)
                             + ++  +.++.+             +     ..         + +..++.+++........+.+.++.. +..
T Consensus       220 -------~-~~--~~~~~~-------------~-----~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (451)
T 1pw4_A          220 -------E-EY--KNDYPD-------------D-----YN---------E-KAEQELTAKQIFMQYVLPNKLLWYIAIAN  261 (451)
T ss_dssp             -------T-TT--CCC-----------------------------------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred             -------h-hh--cccccc-------------c-----ch---------h-hhhcccccccchHHHHHcCHHHHHHHHHH
Confidence                   0 00  000000             0     00         0 0000001100000000111222222 222


Q ss_pred             HHHhHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHH
Q 007612          353 WLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMG  432 (596)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~  432 (596)
                      ++....+.....+.+ .+..+..+.+..      ..+.+.....++.++..++.+++.+|+.+  +        ++..+.
T Consensus       262 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~--------~~~~~~  324 (451)
T 1pw4_A          262 VFVYLLRYGILDWSP-TYLKEVKHFALD------KSSWAYFLYEYAGIPGTLLCGWMSDKVFR--G--------NRGATG  324 (451)
T ss_dssp             HHHHHHHHHHHHHHH-HHBTTBSCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTST--T--------CHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C--------CchhHH
Confidence            222222222222222 122111111111      12233334445555555666655444311  2        223344


Q ss_pred             HHHHHHH-HHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHH
Q 007612          433 IGLVIAI-VAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSAL  511 (596)
Q Consensus       433 ig~~l~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl  511 (596)
                      ++..+.. ++++.+...                  .+.+.+......++.|++.+...+..++++.|.+|++.||+++|+
T Consensus       325 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  386 (451)
T 1pw4_A          325 VFFMTLVTIATIVYWMN------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF  386 (451)
T ss_dssp             HHHHHHHHHHHHHTTSC------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHH
Confidence            4544444 555444331                  112455566677788888888888888999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccc
Q 007612          512 CMTSISL-GNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKW  576 (596)
Q Consensus       512 ~~~~~~l-g~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~  576 (596)
                      .++...+ |+.+++.+.+.+.+.                .+++..|++.+++.+++.++.++..++
T Consensus       387 ~~~~~~~~g~~~~~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          387 TGLFGYLGGSVAASAIVGYTVDF----------------FGWDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS----------------SCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999 999999999988762                235678888888888887777665443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=2.2e-28  Score=265.50  Aligned_cols=416  Identities=13%  Similarity=0.024  Sum_probs=237.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHH
Q 007612           76 NAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEIC  155 (596)
Q Consensus        76 ~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (596)
                      +.+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++.........     ..........+..
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----~~~~~~~~a~~~~  127 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----DNTVPVYLAGYVP  127 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----SSSCCGGGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhHHHHHHhhhHH
Confidence            45678899999999999999999999997 99999999999999999998864110000000     0000000124588


Q ss_pred             HHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHHHHhHHHHHHhhhhhhhccc--------ccchH
Q 007612          156 LFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDE--------GMWAL  227 (596)
Q Consensus       156 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~i~g~l~~~--------~~~~~  227 (596)
                      .++++|+++|+|.|+..+..+++++|..|++.      |++..++.+.+..+|..+++.++..+...        ..|++
T Consensus       128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4gc0_A          128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY  201 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence            99999999999999999999999999999999      99999999999999999998777655432        24555


Q ss_pred             HHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCcccccccc
Q 007612          228 GFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGF  307 (596)
Q Consensus       228 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  307 (596)
                      .+.+..+..++.++..+                                ..||+|+|+..+++.|++.+.+++....+..
T Consensus       202 ~~~~~~~~~~~~~~~~~--------------------------------~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~  249 (491)
T 4gc0_A          202 MFASECIPALLFLMLLY--------------------------------TVPESPRWLMSRGKQEQAEGILRKIMGNTLA  249 (491)
T ss_dssp             HHHTTHHHHHHHHHHGG--------------------------------GSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             Hhhhhhhhhhhhhhhhh--------------------------------cCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence            55544433332222211                                1677777777766555444433332211110


Q ss_pred             chhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHhh-hhccccceeEeeecccccccccccc
Q 007612          308 KFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSV-VFTQMASLFVEQGAAMKTTVSNFRI  386 (596)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  386 (596)
                      ......    .++  .....++...+    ......++................ ....+.+.+... ...+      ..
T Consensus       250 ~~~~~~----~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~  312 (491)
T 4gc0_A          250 TQAVQE----IKH--SLDHGRKTGGR----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGAS------TD  312 (491)
T ss_dssp             HHHHHH----HHH--HHHHHHHHTTH----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCC------HH
T ss_pred             HHHHHH----HHH--HHHhhhhhhhH----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCC------cc
Confidence            000000    000  00000000000    000011111111111111111000 000011111100 0000      00


Q ss_pred             CCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCC
Q 007612          387 PPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGA  466 (596)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (596)
                      ..........+..++...+...+    .+|.+        +++.+..+....+++++.++.....               
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l----~dr~G--------rr~~~~~~~~~~~~~~~~l~~~~~~---------------  365 (491)
T 4gc0_A          313 IALLQTIIVGVINLTFTVLAIMT----VDKFG--------RKPLQIIGALGMAIGMFSLGTAFYT---------------  365 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHC--------SHHHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred             chhhHHHHHHHHHHHHHHHHHHH----HHhhc--------CcchhccchHHHHHHHHHHHHHHhc---------------
Confidence            01111222233333344444444    34444        3334666777777766655543211               


Q ss_pred             ceeehhHHHHHHHHHHHHH-HhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007612          467 SSLSIFWQVPQYALIGASE-VFMYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPG  545 (596)
Q Consensus       467 ~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~  545 (596)
                       ..+.+..+....+...+. ....+..+.+..|.+|.+.|++++|+.++.+++++.+++.+.+.+.+.....        
T Consensus       366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~--------  436 (491)
T 4gc0_A          366 -QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV--------  436 (491)
T ss_dssp             -TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH--------
T ss_pred             -ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence             112222222222222222 2334777899999999999999999999999999999998887664321000        


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhcc
Q 007612          546 NLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIELEAKCAESN  590 (596)
Q Consensus       546 ~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~  590 (596)
                        ...+....|++++++++++.++.+++.||+|++++||.++..+
T Consensus       437 --~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~  479 (491)
T 4gc0_A          437 --AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE  479 (491)
T ss_dssp             --HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred             --hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence              0112234688889999999999999999999999998765544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=2.6e-25  Score=237.36  Aligned_cols=356  Identities=11%  Similarity=0.040  Sum_probs=234.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      ++++.++.++...+........+.+.+| ++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~  100 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL  100 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence            4455666666666666666665555555 56789999999999999999999999999999999997 999999999999


Q ss_pred             HHHHHHHH---HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccch
Q 007612          118 FVIGLVLL---SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSK  194 (596)
Q Consensus       118 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  194 (596)
                      .+++.+++   .++   +                    +.+.++++|++.|++.+...+...++++|++|+++      |
T Consensus       101 ~~~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r  151 (438)
T 3o7q_A          101 YALGAALFWPAAEI---M--------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------G  151 (438)
T ss_dssp             HHHHHHHHHHHHHT---T--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------H
T ss_pred             HHHHHHHHHhcccc---c--------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------H
Confidence            99999888   444   2                    38889999999999999999999999999999999      9


Q ss_pred             hhHHHHHHHHHhHHHHHHhhhhhhhc-cccc-------------------------chHHHHHHHHHHHHHHHHHHhcC-
Q 007612          195 VAFFSYFYLALNLGSLFSNTILGYFE-DEGM-------------------------WALGFWVSTGSAFAALVLFLAGT-  247 (596)
Q Consensus       195 ~~~~~~~~~~~~lg~~~~~~i~g~l~-~~~~-------------------------~~~~f~~~~~~~~~~~~~~~~~~-  247 (596)
                      ++.+++.+...++|..++|.+++++. +..+                         |++.|++.++..++..++.+... 
T Consensus       152 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  231 (438)
T 3o7q_A          152 HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF  231 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999987 5554                         89999876655544444333321 


Q ss_pred             cceeccCCCCChhHHHHHHHHHHHHhhccccCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccC
Q 007612          248 TRYRHFKPSGNPLARFCQVIVAATKKWRVHLSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQG  327 (596)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (596)
                      ++.+++++++++                                              ..+.  ..              
T Consensus       232 p~~~~~~~~~~~----------------------------------------------~~~~--~~--------------  249 (438)
T 3o7q_A          232 PALQSDNHSDAK----------------------------------------------QGSF--SA--------------  249 (438)
T ss_dssp             CCCTTTCCCCSS----------------------------------------------TTSH--HH--------------
T ss_pred             Cccccccccccc----------------------------------------------ccch--hh--------------
Confidence            111000000000                                              0000  00              


Q ss_pred             CCCCCcccCccchhhhhhhhhhHHHHHHhHhHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhh
Q 007612          328 CSNPWRLCPVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYR  407 (596)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  407 (596)
                         +++    ...++++.+...+..++..........+.+.++..+..+.+..      ..+.+.....++.++..++.+
T Consensus       250 ---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~g  316 (438)
T 3o7q_A          250 ---SLS----RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG------FAANYLTGTMVCFFIGRFTGT  316 (438)
T ss_dssp             ---HHH----HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hHH----HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh------HHHHHHHHHHHHHHHHHHHHH
Confidence               000    0001111111112122222222222222222212211122211      122233333444555555555


Q ss_pred             hhhhcccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHh
Q 007612          408 RVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVF  487 (596)
Q Consensus       408 ~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  487 (596)
                      ++.    +|.+        +++.+.++.++.+++++.....                     +..+.+..+++.+++.+.
T Consensus       317 ~l~----~r~~--------~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~  363 (438)
T 3o7q_A          317 WLI----SRFA--------PHKVLAAYALIAMALCLISAFA---------------------GGHVGLIALTLCSAFMSI  363 (438)
T ss_dssp             HHH----HHSC--------HHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHTT
T ss_pred             HHH----HHhc--------chHHHHHHHHHHHHHHHHHHHc---------------------CCcHHHHHHHHHHHHHHH
Confidence            544    4443        4455677777777776655542                     222334455778888888


Q ss_pred             hhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007612          488 MYVAQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLLTMVMKIS  534 (596)
Q Consensus       488 ~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~  534 (596)
                      ..+..+++..|..|++ +++++++.. .+.+|+.+++.+.+.+.+..
T Consensus       364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999977 999999877 67799999999999887744

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=1.4e-23  Score=219.56  Aligned_cols=166  Identities=13%  Similarity=0.121  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007612           44 IIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLV  123 (596)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~  123 (596)
                      ++++...+........+.+.++. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            44556666666666666666665 4578999999999999999999999999999999997 999999999999999998


Q ss_pred             HHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHHHH
Q 007612          124 LLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYFYL  203 (596)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  203 (596)
                      ++.++                       ++.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.+.
T Consensus        81 ~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  131 (375)
T 2gfp_A           81 VAVTT-----------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNM  131 (375)
T ss_dssp             HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHH
T ss_pred             HHHHh-----------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHH
Confidence            88887                       348889999999999999999999999999999988      9999999999


Q ss_pred             HHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHH
Q 007612          204 ALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAAL  240 (596)
Q Consensus       204 ~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~  240 (596)
                      ..++|..++|.+++++.+..+|++.|++.++..++..
T Consensus       132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  168 (375)
T 2gfp_A          132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT  168 (375)
T ss_dssp             HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            9999999999999999988899999988776554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.87  E-value=5.8e-23  Score=218.81  Aligned_cols=393  Identities=12%  Similarity=0.023  Sum_probs=222.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.++......+.....+..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++..+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            4566677767777777777788999999988999999999999999999999999999999997 999999988776654


Q ss_pred             HHHHH---HhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          121 GLVLL---SLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       121 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      +...+   .+.   +.+                   ...++.++.+.+++.|...+...+...+..++..+    .++..
T Consensus        86 ~~~~~~~~~~~---~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~  139 (417)
T 2cfq_A           86 MFAPFFIFIFG---PLL-------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFE  139 (417)
T ss_dssp             CHHHHHHHTHH---HHH-------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCC
T ss_pred             HHHHHHHHHHH---HHH-------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccc
Confidence            32111   121   000                   00123344444444444444444444444433221    15566


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccc
Q 007612          198 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVH  277 (596)
Q Consensus       198 ~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (596)
                      ++..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+..+++    +++..                   
T Consensus       140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~-------------------  195 (417)
T 2cfq_A          140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSA-------------------  195 (417)
T ss_dssp             HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSS-------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----ccccc-------------------
Confidence            777777789999999999998876 579998887654433222221111111    00000                   


Q ss_pred             cCCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHH-HHHh
Q 007612          278 LSAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPI-WLCT  356 (596)
Q Consensus       278 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  356 (596)
                               +.++.++   . +    .+.....+..                        +..+ .+..+..... +...
T Consensus       196 ---------~~~~~~~---~-~----~~~~~~~~~~------------------------~~~~-~~~~~~~~~~~~~~~  233 (417)
T 2cfq_A          196 ---------TVANAVG---A-N----HSAFSLKLAL------------------------ELFR-QPKLWFLSLYVIGVS  233 (417)
T ss_dssp             ---------CSSSSSS---S-C----CCCCCHHHHH------------------------HHTT-CHHHHHHHHHHHHHH
T ss_pred             ---------ccccccc---c-c----cccccHHHHH------------------------HHhc-CCchhhHHHHHHHHH
Confidence                     0000000   0 0    0000000000                        0001 1222222111 1111


Q ss_pred             HhHhhhhccccceeEeeecccccccccccc-CCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHH
Q 007612          357 ILYSVVFTQMASLFVEQGAAMKTTVSNFRI-PPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGL  435 (596)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~  435 (596)
                      ..+.....+++.++...   ....  +.+. ..+....++.+..++...+.+++    .||.+        +++.+.++.
T Consensus       234 ~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g--------~~~~l~~~~  296 (417)
T 2cfq_A          234 CTYDVFDQQFANFFTSF---FATG--EQGTRVFGYVTTMGELLNASIMFFAPLI----INRIG--------GKNALLLAG  296 (417)
T ss_dssp             HHHHHHHHHHHHHHHHT---SSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHH----HHHHC--------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---Hhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHH----HHHhc--------HHHHHHHHH
Confidence            12222111222121110   0000  0000 00122222333334444445544    44444        344566777


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHH-HHH
Q 007612          436 VIAIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSAL-CMT  514 (596)
Q Consensus       436 ~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~  514 (596)
                      .+.+++++..+..                    .+.+.+++..++.+++.....+..+.++.|.+|++.||++.++ +++
T Consensus       297 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  356 (417)
T 2cfq_A          297 TIMSVRIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF  356 (417)
T ss_dssp             HHHHHHHHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            7777766555431                    1344455555666777666677778899999999999999999 488


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 007612          515 SISLGNYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKC  579 (596)
Q Consensus       515 ~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~  579 (596)
                      .+++|+.++|.+.+.+.+                ..++...|.+.+++++++.++.++..++++.
T Consensus       357 ~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          357 FKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             THHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            889999999999997654                1245667888888888887776665655443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.52  E-value=1.3e-13  Score=146.90  Aligned_cols=180  Identities=16%  Similarity=0.096  Sum_probs=150.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhcc--CchHHHHHHHH
Q 007612           39 GWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYW--GRFKTCAIFQG  116 (596)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~--Gr~~~l~~~~~  116 (596)
                      +.+.++..++..++....++++..+++.|+++.+|++..+.+++.+...++..++.++.|+++|| +  |||+.+.++..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~  328 (451)
T 1pw4_A          250 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFM  328 (451)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHH
Confidence            34678888888888999999999999999988899999999999999999999999999999999 6  88888887776


Q ss_pred             HHH-HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchh
Q 007612          117 IFV-IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKV  195 (596)
Q Consensus       117 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  195 (596)
                      +.. ++.+++.+.   +.                  .+...+.+..++.|++.+...+...+++.|.+|++.      |+
T Consensus       329 ~~~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g  381 (451)
T 1pw4_A          329 TLVTIATIVYWMN---PA------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG  381 (451)
T ss_dssp             HHHHHHHHHTTSC---CT------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HH
T ss_pred             HHHHHHHHHHHHh---cc------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hh
Confidence            655 555444433   11                  236667777788889888888888999999999998      99


Q ss_pred             hHHHHHHHHHhH-HHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhc
Q 007612          196 AFFSYFYLALNL-GSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAG  246 (596)
Q Consensus       196 ~~~~~~~~~~~l-g~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  246 (596)
                      +++++++...++ |..++|.+.|++.+..||+..|++.++..+++.++.+..
T Consensus       382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999 999999999999999999999998877766665555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.42  E-value=3.9e-12  Score=134.99  Aligned_cols=168  Identities=12%  Similarity=0.040  Sum_probs=135.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLF-LTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIF  118 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~  118 (596)
                      .+.++..++..++....++++..+++.| +++.+|++..++++..+...++..++.+++|+++||+ |||+.+.++.++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~  335 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA  335 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence            3566777777788888888888999999 8888899999999999999999999999999999997 9999999998888


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHH
Q 007612          119 VIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFF  198 (596)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  198 (596)
                      .++.+++.+.   ++                    ... ++..++.|++.+...|...++..|.+|++       ++.+.
T Consensus       336 ~~~~~~~~~~---~~--------------------~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~  384 (438)
T 3o7q_A          336 MALCLISAFA---GG--------------------HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGS  384 (438)
T ss_dssp             HHHHHHHHHC---CH--------------------HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHH
T ss_pred             HHHHHHHHHc---CC--------------------cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchh
Confidence            8887776665   11                    333 33447788888988999999999998844       44555


Q ss_pred             HHHHHHHhHHHHHHhhhhhhhccccc-chHHHHHHHHHHHHHH
Q 007612          199 SYFYLALNLGSLFSNTILGYFEDEGM-WALGFWVSTGSAFAAL  240 (596)
Q Consensus       199 ~~~~~~~~lg~~~~~~i~g~l~~~~~-~~~~f~~~~~~~~~~~  240 (596)
                      ++.. ...+|+.++|.+.|++.+..| ++..|++.++..++..
T Consensus       385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            5544 567999999999999999888 9999987665544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.38  E-value=2.8e-12  Score=136.07  Aligned_cols=178  Identities=7%  Similarity=-0.013  Sum_probs=131.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQ---NNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      +.++...+..++....++...++++.|+.+.++.   +....+...+...++..++.++.|+++||+ |||+++.++.++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~  298 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence            4455444444444555555667788888776653   234456677777778888999999999997 999999888877


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      .+++.+++.+.   +                    +...+++..++.+++.+...+....+..|.+|++.      |+++
T Consensus       299 ~~~~~~~~~~~---~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~  349 (417)
T 2cfq_A          299 MSVRIIGSSFA---T--------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATI  349 (417)
T ss_dssp             HHHHHHHHTTC---C--------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHH
T ss_pred             HHHHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHH
Confidence            77766555544   1                    24555566666777766666777889999999998      9999


Q ss_pred             HHH-HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCc
Q 007612          198 FSY-FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTT  248 (596)
Q Consensus       198 ~~~-~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  248 (596)
                      .++ ++....+|+.++|.++|++.+..|+...|.+.++..+++.++.+...+
T Consensus       350 ~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          350 YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            998 578888999999999999988888888888877766666555444333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.22  E-value=4.1e-11  Score=129.40  Aligned_cols=186  Identities=12%  Similarity=0.046  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHH-----HHHH
Q 007612           42 AGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCA-----IFQG  116 (596)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~-----~~~~  116 (596)
                      ..+..++..+.....+.....+++.|+.+.++.+..+.+...+...++..++.++.|+++||+ |||+...     ++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence            345555555666666777778888999988888877788888888999999999999999997 9886554     6666


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhh
Q 007612          117 IFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVA  196 (596)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  196 (596)
                      +..++.+++.+......              .....+...+.+..++.|++.+...+...+++.|.+|++.      |++
T Consensus       363 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~  422 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQ  422 (491)
T ss_dssp             HHHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSS
T ss_pred             HHHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHH
Confidence            66666555554311000              0011235667777788999999999999999999999999      999


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcc
Q 007612          197 FFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTR  249 (596)
Q Consensus       197 ~~~~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  249 (596)
                      +.++++...++|..++|.+.+++.+ .++.+.|++.++..+++.++.+...++
T Consensus       423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998866 467777777766666555555555444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.11  E-value=3.8e-10  Score=121.64  Aligned_cols=183  Identities=12%  Similarity=0.063  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           42 AGIIILLNQGLATL-AFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        42 ~~~~~~~~~~~~~~-~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      .........++... ..+.+..+ .+++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          277 VIVIGVMLSIFQQFVGINVVLYY-APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI  354 (491)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHH-HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhc-chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence            33334444444333 33444444 4455667888888888888888889999999999999997 999999999888888


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +.+.++.......                 ......+.+..+..+++ ....|..+.+.+|.+|++.      |+++.++
T Consensus       355 ~~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~  410 (491)
T 4gc0_A          355 GMFSLGTAFYTQA-----------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAI  410 (491)
T ss_dssp             HHHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHH
T ss_pred             HHHHHHHHHhccc-----------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHH
Confidence            7776665422111                 11112222222223333 3345778899999999999      9999999


Q ss_pred             HHHHHhHHHHHHhhhhhhhcc------cccchHHHHHHHHHHHHHHHHHHhcCcce
Q 007612          201 FYLALNLGSLFSNTILGYFED------EGMWALGFWVSTGSAFAALVLFLAGTTRY  250 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  250 (596)
                      .+....+|+.+++.+.+.+.+      ..++.+.|++.+++.+++.+..++..||.
T Consensus       411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            999999999999887776643      23456677777766666666665555554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.92  E-value=3.8e-10  Score=117.23  Aligned_cols=164  Identities=9%  Similarity=-0.013  Sum_probs=127.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH-HH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI-FV  119 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~-~~  119 (596)
                      |.++...+..++.....+.+..+++.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ |++  +.++... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            5677777777888888888889999999988999999999999999999999999999999996 772  2223222 22


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      .+..+...... +                  ..+.+.+++..++.|++.+...+...++..|.+| ++      |+++.+
T Consensus       276 ~~~~~~~~~~~-~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g  329 (375)
T 2gfp_A          276 AGLLMWIPDWF-G------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGA  329 (375)
T ss_dssp             TSSSSSHHHHH-H------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHH
T ss_pred             HHHHHHHHhhh-c------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHH
Confidence            22221111100 0                  0235566677788899999999999999999998 67      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcccccchHHHHHHH
Q 007612          200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWVST  233 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~  233 (596)
                      +.+...++|..++|.+.|.+.+..+|...+.+..
T Consensus       330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            9999999999999999999988777877776644

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.35  E-value=1.3e-06  Score=94.67  Aligned_cols=138  Identities=17%  Similarity=0.073  Sum_probs=99.0

Q ss_pred             ccccchhhHHHHHHhhhhhhhcccccc-cccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCcee
Q 007612          391 MSSFDILSVAAFIFLYRRVIEPLAGGI-RKKNSKGLTELQRMGIGLVIAIVAMLAAGIVECYRLKYAKTECKHCEGASSL  469 (596)
Q Consensus       391 ~~~~~~~~~~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~i~ig~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (596)
                      +.....++..+..++.+++.    ||+ +        +++.+.++.++.+++.+..+...                   .
T Consensus        59 ~~~~~~~~~~~~~~~~G~l~----dr~~g--------~r~~~~~~~~~~~~~~~~~~~~~-------------------~  107 (524)
T 2xut_A           59 VFHSFVIGVYFFPLLGGWIA----DRFFG--------KYNTILWLSLIYCVGHAFLAIFE-------------------H  107 (524)
T ss_dssp             HHHHHHHHHHHTHHHHHHHH----TTSSC--------SHHHHHHHHHHHHHHHHHHHHTS-------------------S
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhc--------chHHHHHHHHHHHHHHHHHHHhc-------------------c
Confidence            33444455556666666554    444 4        34457788888888877766531                   1


Q ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 007612          470 SIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSAL---CMTSISLGNYVSSLLLTMVMKISTEDHMPGWVPGN  546 (596)
Q Consensus       470 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl---~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~  546 (596)
                      +.+.+++..++.|++.+...+...+++.|.+|++.|++++++   .+....+|..+++.+.+.+.+              
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~--------------  173 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK--------------  173 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH--------------
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence            566677788899999999999999999999999999877776   888889999999988887654              


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHhhcc
Q 007612          547 LNKGHLDRFYFLLAGLTTVDFVVYIACAK  575 (596)
Q Consensus       547 ~~~~~~~~~f~~~a~i~~i~~~~~~~~~~  575 (596)
                        ..+++..|++.+++.++..+.+++..+
T Consensus       174 --~~g~~~~f~~~~~~~~~~~~~~~~~~~  200 (524)
T 2xut_A          174 --NFGAAVAFGIPGVLMFVATVFFWLGRK  200 (524)
T ss_dssp             --TSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             --cccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              123567888877777776665554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	596
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.92
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.47
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.36

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4.3e-27  Score=248.32  Aligned_cols=411  Identities=9%  Similarity=-0.018  Sum_probs=244.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHH
Q 007612           40 WVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFV  119 (596)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~  119 (596)
                      |+.+..+++..+........+ +.+.++++ ++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~-~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~  100 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNF-ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  100 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSH-HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHH
Confidence            344444443333333333333 44455765 5899999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHH
Q 007612          120 IGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFS  199 (596)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  199 (596)
                      ++.++++++....                   .+...+++.|++.|++.|...+...++++|++|+++      |+++++
T Consensus       101 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~  155 (447)
T d1pw4a_         101 AVMLFMGFVPWAT-------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS  155 (447)
T ss_dssp             HHHHHHHHCHHHH-------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHH
T ss_pred             HHHhhccccchhh-------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------cccccc
Confidence            9988887762211                   236778999999999999999999999999999999      999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhhcc-cccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhcccc
Q 007612          200 YFYLALNLGSLFSNTILGYFED-EGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHL  278 (596)
Q Consensus       200 ~~~~~~~lg~~~~~~i~g~l~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (596)
                      +.+.+.++|..++|.+++.+.. ..+|++.|++.....++..++.+...++.+++......                   
T Consensus       156 ~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  216 (447)
T d1pw4a_         156 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-------------------  216 (447)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-------------------
T ss_pred             ccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh-------------------
Confidence            9999999999999988887655 35799999887766655555554444432222111000                   


Q ss_pred             CCCcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhh-hhHHHHHHhH
Q 007612          279 SAEGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCIL-RLLPIWLCTI  357 (596)
Q Consensus       279 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  357 (596)
                       ++.+    .+..+                   ..         +++...+...+..........+..+ .....++...
T Consensus       217 -~~~~----~~~~~-------------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (447)
T d1pw4a_         217 -EEYK----NDYPD-------------------DY---------NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL  263 (447)
T ss_dssp             -TTTC----CC-----------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             -hhhh----hhccc-------------------ch---------hhccccccchhhHHHHHHHcCchHHHHHHHhhhhhh
Confidence             0000    00000                   00         0000000000000000001112211 1111122222


Q ss_pred             hHhhhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHH
Q 007612          358 LYSVVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVI  437 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l  437 (596)
                      .......+.+. +..+..+.+..      ..........+..++...+.+++.++..++.         +.........+
T Consensus       264 ~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~  327 (447)
T d1pw4a_         264 LRYGILDWSPT-YLKEVKHFALD------KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN---------RGATGVFFMTL  327 (447)
T ss_dssp             HHHHHHHHHHH-HBTTBSCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC---------HHHHHHHHHHH
T ss_pred             hhhcchhhhhh-hcccccccccc------hhhhhhhcchhhhhhhhhhhhhhhhhccccc---------cccccchhHHH
Confidence            22222222221 11111111111      1222333344455555556665555443332         22222222222


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007612          438 AIVAMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALCMTSIS  517 (596)
Q Consensus       438 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~  517 (596)
                      ..++......                  ....+.+..++.+++.|++.....+..+.+..|.+|++.||+++|+.++..+
T Consensus       328 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  389 (447)
T d1pw4a_         328 VTIATIVYWM------------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY  389 (447)
T ss_dssp             HHHHHHHTTS------------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh------------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            2222222211                  1123455566677778888888888888999999999999999999999888


Q ss_pred             HH-HHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 007612          518 LG-NYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCI  580 (596)
Q Consensus       518 lg-~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~  580 (596)
                      ++ ..+++.+.+.+.+..                +++..|++.++.++++.++..++.++.+++
T Consensus       390 ~~g~~~~~~~~g~~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  437 (447)
T d1pw4a_         390 LGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIGEKRR  437 (447)
T ss_dssp             HHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh----------------ChHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            74 566788888776622                345677777777777776666655544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=8.1e-24  Score=218.44  Aligned_cols=401  Identities=13%  Similarity=0.030  Sum_probs=237.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHH
Q 007612           41 VAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVI  120 (596)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~  120 (596)
                      |.+|.+.+..+........+.++++.|+++++|+|+.+.|++.+.+.++..+++++.|+++||+ ||||+++++..+..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            5788888888888888888889999999999999999999999999999999999999999997 999999999888888


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHH
Q 007612          121 GLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSY  200 (596)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  200 (596)
                      +..++.+....+.                   .....++.+.+.+.+.+...........+..+++..+    +....+.
T Consensus        86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  142 (417)
T d1pv7a_          86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRR----SNFEFGR  142 (417)
T ss_dssp             THHHHHHHTHHHH-------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHH----HSCCHHH
T ss_pred             HHHHHHHhhhhhh-------------------HHHHHHHHHHHhhhcccccccchhhcccccccchhhh----hHHHHHH
Confidence            8777776522111                   1222334444444444444444444443333322211    4455666


Q ss_pred             HHHHHhHHHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHHHhcCcceeccCCCCChhHHHHHHHHHHHHhhccccCC
Q 007612          201 FYLALNLGSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLFLAGTTRYRHFKPSGNPLARFCQVIVAATKKWRVHLSA  280 (596)
Q Consensus       201 ~~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  280 (596)
                      .......+..++|.+++.+.+. +|+..+........+..++.++..++.+..++..++..                .. 
T Consensus       143 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~-  204 (417)
T d1pv7a_         143 ARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG----------------AN-  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH----------------SC-
T ss_pred             Hhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh----------------hh-
Confidence            7777888889999888888764 45555555544444444444443333222111110000                00 


Q ss_pred             CcccchhcccCCCCCCCCCccccccccchhhhhhhhccccccccccCCCCCCcccCccchhhhhhhhhhHHHHHHhHhHh
Q 007612          281 EGEDLYVIDANDSSTNGNRNMLHTHGFKFLDRAAYISSRDLDEQKQGCSNPWRLCPVTQVEEVKCILRLLPIWLCTILYS  360 (596)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (596)
                      .                       ......+..                        ......+................
T Consensus       205 ~-----------------------~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~  237 (417)
T d1pv7a_         205 H-----------------------SAFSLKLAL------------------------ELFRQPKLWFLSLYVIGVSCTYD  237 (417)
T ss_dssp             C-----------------------CCCCHHHHH------------------------HHTTSSHHHHHHHHHHHHHHHHH
T ss_pred             c-----------------------ccccccccc------------------------cccccccccchhhhhHHHHHHHH
Confidence            0                       000000000                        00000000000111111111111


Q ss_pred             hhhccccceeEeeeccccccccccccCCccccccchhhHHHHHHhhhhhhhcccccccccCCCCCChHHHHHHHHHHHHH
Q 007612          361 VVFTQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVAAFIFLYRRVIEPLAGGIRKKNSKGLTELQRMGIGLVIAIV  440 (596)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~i~ig~~l~~v  440 (596)
                      ............   ..... ...............+...+...+    ..++.+|.+        +++.+.++.++.++
T Consensus       238 ~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~r~~--------~~~~~~~~~~~~~~  301 (417)
T d1pv7a_         238 VFDQQFANFFTS---FFATG-EQGTRVFGYVTTMGELLNASIMFF----APLIINRIG--------GKNALLLAGTIMSV  301 (417)
T ss_dssp             HHHHHHHHHHTT---SSSCH-HHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHC--------HHHHHHHHHHHHHH
T ss_pred             hhhccccccccc---ccccc-ccchhhhcccccccccccccchhh----hhhhhcccc--------cccchhhhHHHHHH
Confidence            111100000000   00000 000000111111222223333333    334455544        55667888888887


Q ss_pred             HHHHHHHHHhhhhhhhcccCCCCCCCceeehhHHHHHHHHHHHHHHhhhhhHHHHHHhcCCchhHHHHHHHH-HHHHHHH
Q 007612          441 AMLAAGIVECYRLKYAKTECKHCEGASSLSIFWQVPQYALIGASEVFMYVAQLEFFNAQAPDGLKSFGSALC-MTSISLG  519 (596)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~lg  519 (596)
                      +.+.....                    .+.+.+++..++.+++.+...+..++++.|.+|++.||++.|+. ++...+|
T Consensus       302 ~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  361 (417)
T d1pv7a_         302 RIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA  361 (417)
T ss_dssp             HHHHHHTC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHH
T ss_pred             hhhccccc--------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence            77766652                    35666777888899999999999999999999999999999985 4567899


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 007612          520 NYVSSLLLTMVMKISTEDHMPGWVPGNLNKGHLDRFYFLLAGLTTVDFVVYIACAKWYKCIEL  582 (596)
Q Consensus       520 ~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~i~~~~~~~~~~~~~~~~~  582 (596)
                      ..+++.+.|.+.+.                .+++..|++.++++++..++.++..++.+..+.
T Consensus       362 ~~i~~~~~G~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  408 (417)
T d1pv7a_         362 MIFMSVLAGNMYES----------------IGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHHHHHHHHHHH----------------HCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred             HHHHHHHHHHHHHH----------------HCHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence            99999999988763                245678888888888888887777766655444

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=2e-13  Score=142.23  Aligned_cols=181  Identities=15%  Similarity=0.013  Sum_probs=140.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHH
Q 007612           38 GGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGI  117 (596)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~  117 (596)
                      .+.+.++......++.....+++..+.+.|+.+.++.+..+.++..+...++..++.+++|+++||+ +|++........
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~  324 (447)
T d1pw4a_         246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFF  324 (447)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHH
T ss_pred             HcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchh
Confidence            3456788888888888899999999999999999999999999999999999999999999999997 876654443333


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhH
Q 007612          118 FVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSLEICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAF  197 (596)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  197 (596)
                      ..+...........+                  ..+....++..++.|++.++..+....+..|.+|++.      |+++
T Consensus       325 ~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~  380 (447)
T d1pw4a_         325 MTLVTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA  380 (447)
T ss_dssp             HHHHHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred             HHHHHHHHHHHHhcc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            222222222211101                  1346666777778888888888899999999999998      9999


Q ss_pred             HHHHHHHHhH-HHHHHhhhhhhhcccccchHHHHHHHHHHHHHHHHH
Q 007612          198 FSYFYLALNL-GSLFSNTILGYFEDEGMWALGFWVSTGSAFAALVLF  243 (596)
Q Consensus       198 ~~~~~~~~~l-g~~~~~~i~g~l~~~~~~~~~f~~~~~~~~~~~~~~  243 (596)
                      .++.+...++ |.+++|.+.|++.+.+||+..|++..+..+++.++.
T Consensus       381 ~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         381 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            9998888777 566789999999999999999887766555554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=3.7e-13  Score=137.27  Aligned_cols=146  Identities=7%  Similarity=-0.013  Sum_probs=122.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCch
Q 007612           73 QQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRFKTCAIFQGIFVIGLVLLSLSSYLFLIRPRGCGNELTPCGTHSSL  152 (596)
Q Consensus        73 g~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (596)
                      +.+....+...+...++..++..+.|++.||+ |+|+.+.++.++..++.+++.+.   +                    
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~---~--------------------  310 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA---T--------------------  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC---C--------------------
T ss_pred             ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc---c--------------------
Confidence            44455667777888888899999999999997 99999999998888888877776   2                    


Q ss_pred             hHHHHHHHHHHHHHhccccccchhhhhhccCCccccccccchhhHHHHH-HHHHhHHHHHHhhhhhhhcccccchHHHHH
Q 007612          153 EICLFYLSIYFVALGNGGYQPNIATFGADQYDEEDAKEGHSKVAFFSYF-YLALNLGSLFSNTILGYFEDEGMWALGFWV  231 (596)
Q Consensus       153 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~lg~~~~~~i~g~l~~~~~~~~~f~~  231 (596)
                      +.+.+++..++.|++.+...+...+++.|.+|++.      |++.++.. +....+|..++|.+.|++.+..||+..|++
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~  384 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV  384 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence            26777888889999999999999999999999999      99999984 566789999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhcCc
Q 007612          232 STGSAFAALVLFLAGTT  248 (596)
Q Consensus       232 ~~~~~~~~~~~~~~~~~  248 (596)
                      .+++.++..++.++..+
T Consensus       385 ~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         385 LGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            87776666555555444